Citrus Sinensis ID: 029929

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEccEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEEEccccEcHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASRRRMLLKVIILgdsgvgktSLMNQYVnrkfsnqykatigadfltkevqfEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLiqaspsdpenfpfvvlgnktdvdggnsrvvSEKKAKAWCaskgnipyfetsakegfnvEAAFECIAKNalknepqeee
Flexible Loop (DISEMBL)
MASRRRMLLKviilgdsgvgktSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKnalknepqeee
Low Complexity Region (SEG)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE
Disordered region (IsUnstruct)
******MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS****ENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK***********
Disordered Region (DISOPRED)
***RRRM*LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK***********
Disordered Region (DISEMBL)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE
Disordered Region (DISPRO)
***RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9XER8	207	Ras-related protein Rab7	N/A	no	0.994	0.888	0.967	1e-103
O24461	207	Ras-related protein Rab7	N/A	no	0.994	0.888	0.956	1e-101
Q9C820	206	Ras-related protein RABG3	yes	no	0.994	0.893	0.940	1e-100
Q40787	206	Ras-related protein Rab7	N/A	no	0.994	0.893	0.940	1e-99
Q9LW76	206	Ras-related protein RABG3	no	no	0.994	0.893	0.923	1e-98
P93267	207	Ras-related protein Rab7A	N/A	no	0.994	0.888	0.875	1e-94
Q9LS94	206	Ras-related protein RABG3	no	no	0.994	0.893	0.902	1e-94
P31022	206	Ras-related protein Rab7	N/A	no	0.994	0.893	0.891	2e-94
Q9XI98	206	Ras-related protein RABG3	no	no	0.994	0.893	0.875	5e-92
Q41640	206	Ras-related protein Rab7	N/A	no	0.994	0.893	0.804	1e-86

>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/184 (96%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF+DRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECIA+NALKNE
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Protein transport. Probably involved in vesicular traffic.
Gossypium hirsutum (taxid: 3635)

>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/184 (95%), Positives = 181/184 (98%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLNNWREEFLIQA+PSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+ AF+CIAKNAL NE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Protein transport. Probably involved in vesicular traffic.

Prunus armeniaca (taxid: 36596)

>sp|Q9C820|RAG3D_ARATH Ras-related protein RABG3d OS=Arabidopsis thaliana GN=RABG3D PE=2 SV=1

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/184 (94%), Positives = 180/184 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+SRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNKTDVDGG SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECI KNA KNE
Sbjct: 121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1

 Score =  361 bits (927), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/184 (94%), Positives = 178/184 (96%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NVE AF+CI KNALKNE
Sbjct: 121 VLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Protein transport. Probably involved in vesicular traffic.

Cenchrus ciliaris (taxid: 35872)

>sp|Q9LW76|RAG3C_ARATH Ras-related protein RABG3c OS=Arabidopsis thaliana GN=RABG3C PE=2 SV=1

 Score =  358 bits (918), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/184 (92%), Positives = 180/184 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV DVNVMKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNKTDVDGG SRVV+EKKAK+WCASKGNIPYFETSAK+G NV+AAFECIAKNALKNE
Sbjct: 121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P93267|RAB7_MESCR Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  345 bits (885), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/184 (87%), Positives = 176/184 (95%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR LLK+IILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKE+QFEDRLFTLQ
Sbjct: 1   MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSF++LN WREEFLIQASP+DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK DVDGG+ RVVSEKKAKAWC SKGNIPYFETSAK+G NVE AF+CIAKNA++NE
Sbjct: 121 VLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Protein transport. Probably involved in vesicular traffic.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2 SV=1

 Score =  345 bits (884), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/184 (90%), Positives = 174/184 (94%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V++GNK DVD GNSRVVSEKKAKAWCASKGNIPYFETSAK G NVE AF+CIAK+ALK+ 
Sbjct: 121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query: 181 PQEE 184
            +EE
Sbjct: 181 EEEE 184

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1

 Score =  344 bits (882), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 175/184 (95%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSFDNLNNWREEFLIQA+PSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+GNK D+DGGNSRVVSEKKA+AWCA+KGNIPYFETSAKEG NVE AF+ IAK+ALK+ 
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180

Query: 181 PQEE 184
            +EE
Sbjct: 181 EEEE 184

Protein transport. Probably involved in vesicular traffic.

Pisum sativum (taxid: 3888)

>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2 SV=1

 Score =  336 bits (862), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 161/184 (87%), Positives = 171/184 (92%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN  KSF++LNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+GNK DVDGG+SRVVSEKKA+AWCASKGNIPY+ETSAK G NVE AF CI  NA+K+ 
Sbjct: 121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query: 181 PQEE 184
            +EE
Sbjct: 181 EEEE 184

Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41640|RAB7_VIGAC Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1

 Score =  318 bits (815), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 166/184 (90%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+ RRR LLKVI+LGD+GVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1   MSLRRRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSFD L+NW EEFL QA+P DP +FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++LGNK D+DGGNSRVVSEKKAK WCASKGNIPYFETSAKE FNV+AAF CIAK AL NE
Sbjct: 121 ILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANE 180

Query: 181 PQEE 184
            +++
Sbjct: 181 HEQD 184

Protein transport. Probably involved in vesicular traffic.

Vigna aconitifolia (taxid: 3918)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
147828269	207	hypothetical protein VITISV_010510 [Viti	0.994	0.888	0.983	1e-103
225442589	207	PREDICTED: ras-related protein Rab7 [Vit	0.994	0.888	0.983	1e-102
148466386	207	Rab7 [Prosopis juliflora]	0.994	0.888	0.978	1e-102
351721665	207	uncharacterized protein LOC100305824 [Gl	0.994	0.888	0.972	1e-102
357468399	207	Ras-related protein Rab7 [Medicago trunc	0.994	0.888	0.972	1e-101
255549976	207	protein with unknown function [Ricinus c	0.994	0.888	0.972	1e-101
7388049	207	RecName: Full=Ras-related protein Rab7 g	0.994	0.888	0.967	1e-101
388520895	207	unknown [Lotus japonicus]	0.994	0.888	0.967	1e-101
449448032	206	PREDICTED: ras-related protein RABG3d-li	0.994	0.893	0.956	1e-100
357454943	209	Ras-related protein Rab7 [Medicago trunc	0.983	0.870	0.967	1e-100

>gi|147828269|emb|CAN75406.1| hypothetical protein VITISV_010510 [Vitis vinifera]

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/184 (98%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442589|ref|XP_002284408.1| PREDICTED: ras-related protein Rab7 [Vitis vinifera] gi|297743251|emb|CBI36118.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/184 (98%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148466386|gb|ABQ65168.1| Rab7 [Prosopis juliflora]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/184 (97%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Prosopis juliflora

Species: Prosopis juliflora

Genus: Prosopis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721665|ref|NP_001237217.1| uncharacterized protein LOC100305824 [Glycine max] gi|356521867|ref|XP_003529572.1| PREDICTED: ras-related protein Rab7-like [Glycine max] gi|1370188|emb|CAA98171.1| RAB7D [Lotus japonicus] gi|255626709|gb|ACU13699.1| unknown [Glycine max]

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/184 (97%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468399|ref|XP_003604484.1| Ras-related protein Rab7 [Medicago truncatula] gi|217075638|gb|ACJ86179.1| unknown [Medicago truncatula] gi|355505539|gb|AES86681.1| Ras-related protein Rab7 [Medicago truncatula] gi|388494386|gb|AFK35259.1| unknown [Medicago truncatula]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/184 (97%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549976|ref|XP_002516039.1| protein with unknown function [Ricinus communis] gi|223544944|gb|EEF46459.1| protein with unknown function [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/184 (97%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED+LFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDKLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7388049|sp|Q9XER8.1|RAB7_GOSHI RecName: Full=Ras-related protein Rab7 gi|4545231|gb|AAD22451.1|AF116243_1 RAS-related GTP-binding protein [Gossypium hirsutum]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/184 (96%), Positives = 183/184 (99%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF+DRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECIA+NALKNE
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520895|gb|AFK48509.1| unknown [Lotus japonicus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/184 (96%), Positives = 182/184 (98%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVII GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIIFGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448032|ref|XP_004141770.1| PREDICTED: ras-related protein RABG3d-like isoform 1 [Cucumis sativus]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/184 (95%), Positives = 181/184 (98%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR+LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ +DRLFTLQ
Sbjct: 1   MASRRRILLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQLDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NV+AAF+CIAKNALKNE
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGLNVDAAFQCIAKNALKNE 180

Query: 181 PQEE 184
           P+EE
Sbjct: 181 PEEE 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454943|ref|XP_003597752.1| Ras-related protein Rab7 [Medicago truncatula] gi|355486800|gb|AES68003.1| Ras-related protein Rab7 [Medicago truncatula]

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/182 (96%), Positives = 179/182 (98%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ EDRLFTLQIW
Sbjct: 5   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQVEDRLFTLQIW 64

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLN+WREEFLIQASPSDPENFPFVV
Sbjct: 65  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVV 124

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           LGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI KNALKNEP+
Sbjct: 125 LGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECITKNALKNEPE 184

Query: 183 EE 184
           EE
Sbjct: 185 EE 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2018124	206	RABG3d "RAB GTPase homolog G3D	0.994	0.893	0.940	3e-92
TAIR|locus:2093437	206	RABG3c "RAB GTPase homolog G3C	0.994	0.893	0.923	2.5e-90
TAIR|locus:2094029	206	RAB7B "RAB GTPase homolog G3F"	0.994	0.893	0.902	6e-87
TAIR|locus:2010257	206	RABG3E "RAB GTPase homolog G3E	0.994	0.893	0.875	3.4e-84
TAIR|locus:2199716	203	RABG3B "RAB GTPase homolog G3B	0.994	0.906	0.766	1.2e-74
DICTYBASE|DDB_G0269236	203	rab7A "Rab GTPase" [Dictyostel	0.962	0.876	0.766	1.4e-73
ZFIN|ZDB-GENE-040704-16	204	zgc:91909 "zgc:91909" [Danio r	0.956	0.867	0.783	5.3e-72
ZFIN|ZDB-GENE-040927-2	205	zgc:100918 "zgc:100918" [Danio	0.978	0.882	0.755	5.3e-72
TAIR|locus:2118500	217	RABG3A "RAB GTPase homolog G3A	0.994	0.847	0.728	6.7e-72
ZFIN|ZDB-GENE-040426-1352	207	rab7 "RAB7, member RAS oncogen	0.978	0.874	0.75	1.8e-71

TAIR|locus:2018124 RABG3d "RAB GTPase homolog G3D" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 173/184 (94%), Positives = 180/184 (97%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M+SRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNKTDVDGG SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECI KNA KNE
Sbjct:   121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query:   181 PQEE 184
             P+EE
Sbjct:   181 PEEE 184

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093437 RABG3c "RAB GTPase homolog G3C" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 170/184 (92%), Positives = 180/184 (97%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV DVNVMKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNKTDVDGG SRVV+EKKAK+WCASKGNIPYFETSAK+G NV+AAFECIAKNALKNE
Sbjct:   121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query:   181 PQEE 184
             P+EE
Sbjct:   181 PEEE 184

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2094029 RAB7B "RAB GTPase homolog G3F" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 166/184 (90%), Positives = 174/184 (94%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             V++GNK DVD GNSRVVSEKKAKAWCASKGNIPYFETSAK G NVE AF+CIAK+ALK+ 
Sbjct:   121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query:   181 PQEE 184
              +EE
Sbjct:   181 EEEE 184

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2010257 RABG3E "RAB GTPase homolog G3E" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 161/184 (87%), Positives = 171/184 (92%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN  KSF++LNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VV+GNK DVDGG+SRVVSEKKA+AWCASKGNIPY+ETSAK G NVE AF CI  NA+K+ 
Sbjct:   121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query:   181 PQEE 184
              +EE
Sbjct:   181 EEEE 184

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2199716 RABG3B "RAB GTPase homolog G3B" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 141/184 (76%), Positives = 160/184 (86%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M++RRR LLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct:     1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             ++LGNK D+DGGNSRVVSEKKA+ WCA KGNI YFETSAKE +NV+ +F CI K AL NE
Sbjct:   121 ILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANE 180

Query:   181 PQEE 184
               ++
Sbjct:   181 RDQD 184

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0269236 rab7A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 138/180 (76%), Positives = 162/180 (90%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MA+++++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKE+  +DR+ T+Q
Sbjct:     1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVL YDVNV K+F+NL++WR+EFLIQA P DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++  N RVVS+K+A +WC SKGNIPYFETSAKE  NVE AF+ IA+NA+K E
Sbjct:   121 VVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLE 178

GO:0005615 "extracellular space" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006909 "phagocytosis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040704-16 zgc:91909 "zgc:91909" [Danio rerio (taxid:7955)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 141/180 (78%), Positives = 156/180 (86%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASR+++LLKVIILGDSGVGKTSLMNQYVN KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  L++WR+EFLIQAS SDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPTTFKTLDSWRDEFLIQASTSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D+D   +R VS K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLD---NRQVSTKRAQAWCQSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040927-2 zgc:100918 "zgc:100918" [Danio rerio (taxid:7955)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 139/184 (75%), Positives = 159/184 (86%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  L++WR+EFLIQASP DPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NV+ AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLE---NRQVTTKRAQAWCQSKSNIPYFETSAKEAINVDQAFQTIARNALKQE 177

Query:   181 PQEE 184
              + E
Sbjct:   178 SEVE 181

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2118500 RABG3A "RAB GTPase homolog G3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 142/195 (72%), Positives = 161/195 (82%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MA+RRR LLKVI+LGDSGVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q  ++L TLQ
Sbjct:     1 MATRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIGEKLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA---------- 110
             IWDTAGQERFQSLG AFYRGADCC LVYDVNV++SFDNL  W EEFL QA          
Sbjct:    61 IWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQAWNIGMWTIAE 120

Query:   111 -SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
              SPSDP+ FPF+VLGNK DVDGG+SRVVS+KKA  WCAS GNIPYFETSAK+ FNV+ AF
Sbjct:   121 ASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEAF 180

Query:   170 ECIAKNALKNEPQEE 184
               IAK AL NE +++
Sbjct:   181 LTIAKTALANEHEQD 195

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040426-1352 rab7 "RAB7, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 138/184 (75%), Positives = 158/184 (85%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLE---NRQVTTKRAQAWCQSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query:   181 PQEE 184
              + E
Sbjct:   178 TEVE 181

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51149	RAB7A_HUMAN	No assigned EC number	0.75	0.9783	0.8743	yes	no
O04157	RAG3B_ARATH	No assigned EC number	0.7663	0.9945	0.9064	no	no
P93267	RAB7_MESCR	No assigned EC number	0.875	0.9945	0.8888	N/A	no
Q9C2L8	RAB7_NEUCR	No assigned EC number	0.75	0.9891	0.8926	N/A	no
Q9LW76	RAG3C_ARATH	No assigned EC number	0.9239	0.9945	0.8932	no	no
O97572	RAB7A_RABIT	No assigned EC number	0.7391	0.9783	0.8743	yes	no
Q43463	RAB7_SOYBN	No assigned EC number	0.8043	0.9945	0.8932	no	no
Q40787	RAB7_CENCI	No assigned EC number	0.9402	0.9945	0.8932	N/A	no
Q6DUB4	RAB7B_PAROT	No assigned EC number	0.6521	0.9837	0.8834	N/A	no
Q948K8	RAG3A_ARATH	No assigned EC number	0.7717	0.9945	0.8932	no	no
P09527	RAB7A_RAT	No assigned EC number	0.75	0.9783	0.8743	yes	no
P32939	YPT7_YEAST	No assigned EC number	0.6236	0.9945	0.8846	yes	no
Q9XI98	RAG3E_ARATH	No assigned EC number	0.875	0.9945	0.8932	no	no
P36411	RAB7A_DICDI	No assigned EC number	0.7666	0.9621	0.8768	yes	no
P51150	RAB7A_MOUSE	No assigned EC number	0.75	0.9783	0.8743	yes	no
Q9C820	RAG3D_ARATH	No assigned EC number	0.9402	0.9945	0.8932	yes	no
O94655	YPT7_SCHPO	No assigned EC number	0.7206	0.9621	0.8682	yes	no
Q95UJ0	RAB7A_PAROT	No assigned EC number	0.6576	0.9837	0.8834	N/A	no
Q3T0F5	RAB7A_BOVIN	No assigned EC number	0.7445	0.9783	0.8743	yes	no
Q41640	RAB7_VIGAC	No assigned EC number	0.8043	0.9945	0.8932	N/A	no
P36864	YPTV5_VOLCA	No assigned EC number	0.7445	0.9891	0.8926	N/A	no
P31022	RAB7_PEA	No assigned EC number	0.8913	0.9945	0.8932	N/A	no
Q5R9Y4	RAB7A_PONAB	No assigned EC number	0.75	0.9783	0.8743	yes	no
O24461	RAB7_PRUAR	No assigned EC number	0.9565	0.9945	0.8888	N/A	no
P18067	RAB7A_CANFA	No assigned EC number	0.75	0.9783	0.8743	yes	no
Q9LS94	RAG3F_ARATH	No assigned EC number	0.9021	0.9945	0.8932	no	no
Q39573	YPTC5_CHLRE	No assigned EC number	0.7608	0.9945	0.8932	N/A	no
Q9XER8	RAB7_GOSHI	No assigned EC number	0.9673	0.9945	0.8888	N/A	no
Q9SJ11	RABG2_ARATH	No assigned EC number	0.7166	0.9729	0.8490	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-129
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-87
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-77
pfam00071	162	pfam00071, Ras, Ras family	3e-73
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	9e-70
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-51
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-50
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-49
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-48
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-48
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-47
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-47
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-44
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-42
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-41
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-40
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-39
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-38
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	6e-38
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-38
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	7e-38
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-37
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-37
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-36
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-36
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-35
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-35
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	8e-35
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-34
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-34
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-33
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-33
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-31
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-30
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-29
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-29
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-29
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	9e-29
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-28
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	6e-28
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-28
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-27
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-26
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-26
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	8e-26
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-25
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-25
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	9e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-24
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-23
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-23
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-22
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-19
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	6e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	8e-18
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-17
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-17
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	9e-17
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-16
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	6e-16
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-15
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-13
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-13
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-12
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	8e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-11
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-11
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-11
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	9e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	5e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-06
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	9e-06
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	2e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	4e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	4e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	1e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	1e-04
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	5e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	7e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	9e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.001
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.001
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.002
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.004

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  360 bits (926), Expect = e-129
 Identities = 137/174 (78%), Positives = 151/174 (86%), Gaps = 2/174 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL TLQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RFQSLGVAFYRGADCCVLVYDV   KSF++L++WR+EFLIQASP DPENFPFVVLGNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           ++    R VS KKA+ WC SKGNIPYFETSAKE  NV+ AFE IA+ AL+ E +
Sbjct: 121 LE--EKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  252 bits (645), Expect = 6e-87
 Identities = 82/171 (47%), Positives = 120/171 (70%), Gaps = 7/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+I++GDSGVGK+SL++++ + KFS QYK+TIG DF TK ++ + +   LQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYD+   +SF+NL NW +E    ASP    N   +++GNK+D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           ++    R VS ++A+A+ A +  +P+FETSAK   NVE AFE +A+  LK 
Sbjct: 117 LE--EQRQVSREEAEAF-AEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  228 bits (583), Expect = 2e-77
 Identities = 77/166 (46%), Positives = 116/166 (69%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGKTSL+ ++V+ KFS  YK+TIG DF +K ++ + +   LQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYDV   +SF+NL+ W  E    A    P N P +++GNK+D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILVGNKSD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++  + R VS ++A+ + A +  + +FETSAK G NV+ AFE +A+
Sbjct: 117 LE--DERQVSTEEAQQF-AKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  217 bits (555), Expect = 3e-73
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 7/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK+SL+ ++   KF  +Y  TIG DF TK ++ + +   LQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F++L   +YRGA   +LVYD+    SF+N+  W EE L  A     EN P V++GNK D+
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
              + RVVS ++ +A     G +P+ ETSAK   NVE AFE +A+  LK
Sbjct: 117 --EDQRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  208 bits (532), Expect = 9e-70
 Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 3/166 (1%)

Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +  LLKVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    TLQIWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LG
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           NK D+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE
Sbjct: 122 NKIDIP---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 164

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  164 bits (417), Expect = 2e-52
 Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LGD  VGKTS++ +++   F NQY+ATIG DFL+K +  +D+   LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+   +SFDN + W ++   +   +D      V++GNKTD+
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVI---IVLVGNKTDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
              + R VS ++ +   A + N  + ETSAK G NV+  F+ IA+ 
Sbjct: 118 S--DKRQVSTEEGEKK-AKENNAMFIETSAKAGHNVKQLFKKIAQA 160

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  160 bits (408), Expect = 5e-51
 Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +YV  KF+ ++++T  A F  K V    +   L IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + +LG  +YR AD  +LVYD+    SF  +  W +E  ++    +  N   V++GNK D+
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKE--LKQMRGN--NISLVIVGNKIDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +    RVVS+ +A+ +  S G   +FETSAK G  +E  F  +AK
Sbjct: 118 E--RQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAK 159

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  159 bits (404), Expect = 3e-50
 Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K++++GDSGVGK+ L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  ++YRGA   +LVYD+   KSF+N+ NW       AS    E+   +++GNK
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNK 117

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++    RVVS+++ +A  A +  I + ETSAK   NVE AF  +AK+ LK 
Sbjct: 118 CDME--EKRVVSKEEGEA-LAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  155 bits (395), Expect = 6e-49
 Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 3   LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK+
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADS----NIVIMLVGNKS 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           D+   + R V  ++AKA+ A K  + + ETSA +G NVE AF+ +   
Sbjct: 119 DL--RHLRAVPTEEAKAF-AEKNGLSFIETSALDGTNVEEAFKQLLTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  155 bits (395), Expect = 2e-48
 Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 2/173 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQ 67
            KV+++GD GVGKTS++ +YV+  FS  YKATIG DF  K ++++   +  LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF  +   +Y+GA   ++V+DV    +F+ +  W+ +   + +  + E  P ++L NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           D+         E +   +C   G I +FETSAKE  N+E A   + KN LKN+
Sbjct: 121 DLKKERLAKDPE-QMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKND 172

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  153 bits (388), Expect = 8e-48
 Identities = 68/173 (39%), Positives = 108/173 (62%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNK 116

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+   + +VV   +AK + A +  IP+ ETSAK   NVE AF  +A+   K 
Sbjct: 117 CDLT--DKKVVDYTEAKEF-ADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  152 bits (385), Expect = 2e-47
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GDSGVGK+SL+ ++ +  F     +TIG DF  K V  + +   L IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV    +FDNL+ W  E     + S   +   +++GNK D
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL---DTYSTNPDAVKMLVGNKID 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            +   +R V+ ++ + + A K N+ + ETSAK    V+ AFE + 
Sbjct: 118 KE---NREVTREEGQKF-ARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  151 bits (385), Expect = 2e-47
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGDS VGK+S++ ++V  +FS   ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           ++SL   +YRGA   ++VYD+   +SF+   +W +E      P    N    + GNK D+
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + R VS ++A+ +    G + + ETSAK G NV   F  IA+
Sbjct: 119 E--SKRQVSTEEAQEYADENGLL-FMETSAKTGENVNELFTEIAR 160

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  144 bits (364), Expect = 4e-44
 Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 16/175 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 4   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRV 63

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 64  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD- 122

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              V++GNK D+   + R VSE++A+      G IPYFETSA  G NVE A E +
Sbjct: 123 --IVLIGNKADLP--DQREVSERQARELADKYG-IPYFETSAATGQNVEKAVETL 172

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  138 bits (350), Expect = 4e-42
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  ++V+ +F  +Y  TI  D   K++  +   +TL I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  D  +LVY +   +SF+ + N RE+ L      D E+ P V++GNK D+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV---KDKEDVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +  N R VS ++ +A  A +   P+ ETSAK   N++  F  + +  
Sbjct: 117 E--NERQVSTEEGEAL-AEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  137 bits (347), Expect = 1e-41
 Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 4   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    ++     N   +++GNK 
Sbjct: 64  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKC 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++  + R VS ++ +A+ A +  + + ETSAK   NVE AF   AK     
Sbjct: 120 DLE--SRREVSYEEGEAF-AREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  132 bits (334), Expect = 9e-40
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 7/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K +I+G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYD+   +SF+ L NW  +    ASP    +   +++GNK D
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP----DIVIILVGNKKD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           ++  + R V+  +A  + A +  + + ETSA  G NVE AF
Sbjct: 117 LE--DDREVTFLEASRF-AQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (335), Expect = 2e-39
 Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 19/191 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LGD GVGKT+L+N+ V  +F   Y  TIG     K ++   R   LQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            ++SL   +YRGA+  ++VYD  + +S D L   W EE    A    P++ P +++GNK 
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKI 121

Query: 128 DVDG------------GNSRVVSEKKAKAWCASKGNIPYFETSAK--EGFNVEAAFECIA 173
           D+                  V+     KA      N    ETSAK   G NV   F+ + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 174 KNALKNEPQEE 184
           +  L+   +  
Sbjct: 182 RKLLEEIEKLV 192

Length = 219

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  131 bits (330), Expect = 1e-38
 Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 12/182 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 6   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++   +YRG    ++VYDV   +SF N+  W +E  I+ +  D      V++GNK 
Sbjct: 66  ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQE--IEQNCDDVCK---VLVGNKN 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL----KNEPQE 183
             D    +VV  + A  +      I  FETSAKE  NVE  F CI +  L     N  ++
Sbjct: 121 --DDPERKVVETEDAYKFAGQM-GISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQ 177

Query: 184 EE 185
           ++
Sbjct: 178 QQ 179

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  127 bits (322), Expect = 6e-38
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K+I++GDS VGKT ++ ++ +  FS +   TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 3   LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  ++ YD+    SF+++ +W EE     +     N   +++GNK 
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS----NVVLLLIGNKC 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++    R V  ++A       G +   ETSAKE  NVE AF  +A 
Sbjct: 119 DLE--EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  129 bits (325), Expect = 7e-38
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQ
Sbjct: 12  LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK+
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKS 127

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D++  + R V+E+  +A  A K  + + ETSA E  NVE AF+ I
Sbjct: 128 DLN--HLRSVAEEDGQAL-AEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  128 bits (323), Expect = 7e-38
 Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 8/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + AT+G  F  K V  +     LQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  A+YR A   +L+YDV    SFDN+  W  E L  A      +   ++LGNK D
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ----SDVVIMLLGNKAD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           + G   RVV  +  +   A +  +P+ ETSAK G NVE AF  +AK
Sbjct: 118 MSG--ERVVKREDGER-LAKEYGVPFMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  126 bits (319), Expect = 2e-37
 Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N    ++GNK 
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKA 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK + A +  + + E SAK G NVE AF   AK   +N
Sbjct: 118 DLEA--QRDVTYEEAKQF-ADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  126 bits (317), Expect = 4e-37
 Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 10/167 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAG 66
           +KVI++G+  VGK+S++ ++V   F+  YK TIG DFL K++          L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE F ++  A+YRGA  C+LV+     +SF+ + +W+E        ++  + P V++  K
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKE-----KVEAECGDIPMVLVQTK 115

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            D+   +  V++ ++A+A  A +  +P F TS K+ FNV   FE +A
Sbjct: 116 IDL--LDQAVITNEEAEA-LAKRLQLPLFRTSVKDDFNVTELFEYLA 159

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  125 bits (316), Expect = 5e-37
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KVI +G+SGVGK+ ++ +Y   +F ++Y  TIG D+  K+V   ++   +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQ-ASPSDPENFPFVVLGNKT 127
            +  +   FY+     +LVYDV   +SF+ L++W +E   +     + EN   VV  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            +D    R VSE + + W  SKG   YFETSA  G  V   F+
Sbjct: 120 -IDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNEMFQ 160

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  124 bits (313), Expect = 2e-36
 Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 11/174 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+I++GDS VGKT L  ++   +F  + +ATIG DF  + V+ +     +Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 70  F-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           F +S+   +YR     V VYDV  M SF +L +W EE    + P++    P +++GNK D
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE---VPRILVGNKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAKNALKN 179
           +       V    A+ + A   ++P FETSAK   E  +VEA F  +A + LK+
Sbjct: 121 L--REQIQVPTDLAQRF-ADAHSMPLFETSAKDPSENDHVEAIFMTLA-HKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  123 bits (311), Expect = 9e-36
 Identities = 59/166 (35%), Positives = 105/166 (63%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQE 68
           ++I++GDS VGK+SL+ ++   +F+     T+G DF ++ ++ E  +   LQ+WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YR +   +LV+D+   +SF+++++W EE      P  P    F+++G+K D
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---VFILVGHKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++  + R V+ ++A+      G + Y ETSA+ G NVE AFE + +
Sbjct: 121 LE--SQRQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQ 163

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  121 bits (306), Expect = 4e-35
 Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  +++   LQIWDTAGQ
Sbjct: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A+     N   +++GNK 
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+   + R VS ++ + +    G I + E SAK   NVE AF   A    K 
Sbjct: 122 DL--AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAKIYKK 170

Length = 210

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  120 bits (301), Expect = 8e-35
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 7/163 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F++ + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVILVGNKC 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVVS ++ +      G   +FE SAKE  NV+  FE
Sbjct: 117 DME--DERVVSAERGRQLADQLG-FEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  120 bits (301), Expect = 8e-35
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 7/166 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+ +     LQIWDTAGQ
Sbjct: 7   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A+         +++GNK 
Sbjct: 67  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKI 122

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     R VS+++A+ + +   ++ Y ETSAKE  NVE  F  +A
Sbjct: 123 DL--AERREVSQQRAEEF-SDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  118 bits (298), Expect = 3e-34
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q++   F + Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D ++ P V++GNK D+
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL---RVKDRDDVPIVLVGNKCDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +  + RVVS ++ K   A +   P+ ETSAKE  NV+ AF 
Sbjct: 118 E--SERVVSTEEGKE-LARQWGCPFLETSAKERVNVDEAFY 155

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  119 bits (299), Expect = 4e-34
 Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    E+   +++GNK D
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
            +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK  P +
Sbjct: 117 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD 169

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  116 bits (292), Expect = 2e-33
 Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D ++ P V++GNK D+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQIL---RVKDRDDVPIVLVGNKCDL 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +  N RVVS ++ K   A +   P+ ETSAKE  NV+ AF 
Sbjct: 120 E--NERVVSTEEGKE-LARQWGCPFLETSAKERINVDEAFY 157

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  114 bits (288), Expect = 7e-33
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 13  ILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++G  GVGK+SL+N  +  +    S+    T   D   KE+        L + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTPGLDE 59

Query: 70  FQSLGVA-----FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           F  LG         RGAD  +LV D    +S ++        L +      E  P +++G
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK------EGIPIILVG 113

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           NK D+     R V E       A    +P FE SAK G  V+  FE + +
Sbjct: 114 NKIDLL--EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  111 bits (279), Expect = 2e-31
 Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q++   F   Y  TI  D  TK+ + + +   L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-EDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++   + R  +  +LV+ V    SF+ ++ +  + L      D + FP +++GNK D
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL---RVKDRDEFPMILVGNKAD 118

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           ++  + R VS ++ +   A +  IPY ETSAK+  NV+ AF 
Sbjct: 119 LE--HQRQVSREEGQEL-ARQLKIPYIETSAKDRVNVDKAFH 157

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  111 bits (280), Expect = 4e-31
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           +K+++LGD   GKTSL+ ++    F   YK TIG DF ++ +     L  TLQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GNK 126
           +    +   +  GA    LVYD+   +SF+NL +W    +++    + E  P +VL GNK
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLS--VVKKVNEESETKPKMVLVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           TD++  ++R V+ +K   +         F  SAK G  V   F+ IA
Sbjct: 119 TDLE--HNRQVTAEKHARFAQENDMESIF-VSAKTGDRVFLCFQRIA 162

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  109 bits (274), Expect = 7e-31
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+I+LGDS VGK+ L+ +++   +  Q  +T          +FE +   +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RFQ++  ++Y  A  C+LV+DV    ++ NL+ W EE L +  P      P +V+ NK D
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LREYRPE----IPCIVVANKID 115

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +D      V++KK     A K N+P +  SA +G NV   F+   K A+ 
Sbjct: 116 LDPS----VTQKKFNF--AEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  109 bits (274), Expect = 1e-30
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 30/180 (16%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQIW 62
           K++++GD G GKT+ + +++  +F  +Y AT+G      DF T   +++F        +W
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------VW 54

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           DTAGQE+F  L   +Y    C ++++DV    ++ N+ NW  + +        EN P V+
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVL 109

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            GNK D        + ++K K    +   K N+ Y+E SAK  +N E  F  +A+  L N
Sbjct: 110 CGNKVD--------IKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  106 bits (267), Expect = 1e-29
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 8/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK---RVKDSDDVPMVLVGNKCD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +    +R VS ++ +    S G IPY ETSAK    VE AF
Sbjct: 118 LA---ARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  107 bits (268), Expect = 2e-29
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 9/170 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +KV++LG   VGKTSL+ +YV+ +F    Y+ TIGA F+ K +   +R+ TL IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++   +YRGA   ++ YD+    SF+    W +E       +  E+    + G K+
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-----QNLEEHCKIYLCGTKS 115

Query: 128 DV--DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           D+     + R V     + + A +    +FETS+K G NV+  F+ +A++
Sbjct: 116 DLIEQDRSLRQVDFHDVQDF-ADEIKAQHFETSSKTGQNVDELFQKVAED 164

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  105 bits (265), Expect = 3e-29
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++GD  VGKT L+  Y   KF  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  +L + V+   SF+N+   W  E +    P    N P +++G K 
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE-IKHYCP----NVPIILVGTKI 114

Query: 128 DV-DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAK 174
           D+ D GN+    EKK K     +G         + Y E SA     ++  F+   +
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  105 bits (264), Expect = 9e-29
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGK+SL+  +++    +    TIG DF  K++    +   L IWDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
           RF++L  ++YR A   +LVYDV   ++F NL++ W +E  + ++  D      +++GNK 
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLVGNKV 130

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D +    R VS ++  A  A +    + E SAK   NVE  FE +A
Sbjct: 131 DRESE--RDVSREEGMA-LAKEHGCLFLECSAKTRENVEQCFEELA 173

Length = 211

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  104 bits (262), Expect = 2e-28
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 45/197 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV++LGD  VGKTSL+++Y+ R+F     +T+G  F  K+       + + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW----GPYNISIWDTAGRE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  LG  + RGA   +L YDV+ ++S + L    E+  +  + +  E+  F V+GNK D
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEEL----EDRFLGLTDTANEDCLFAVVGNKLD 111

Query: 129 VDGGNS-----------------RVVSEKKAKAW----------------CASKGNIPYF 155
           +    +                 R V+ + AKA+                 A K     F
Sbjct: 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEK---MCF 168

Query: 156 ETSAKEGFNVEAAFECI 172
           ETSAK G+NV+  FE +
Sbjct: 169 ETSAKTGYNVDELFEYL 185

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  102 bits (256), Expect = 6e-28
 Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++GD  VGKT L+N++    F   YKATIG DF  +  +     F+LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+ +   +YRGA   ++V+D+  + S ++   W E+ L +  PS      F+V G K D+
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV--LLFLV-GTKKDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
                  + E+ A    A +    Y+  SA  G NV   F  +A
Sbjct: 119 SSPAQYALMEQDA-IKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  102 bits (255), Expect = 7e-28
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F   Y  TI  D   K+V+ + R   L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-EDSYRKQVEIDGRQCDLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +     +LVY V    S + L   RE+ L      D +N P V++GNK D+
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL---RIKDSDNVPMVLVGNKADL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + R VS +   +     GN+P++ETSA++  NV+  F
Sbjct: 119 E--DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  103 bits (258), Expect = 9e-28
 Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 33/184 (17%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQIW 62
           K+I++GD GVGKT+ + +++  +F  +Y  T+G +     F T    + F        +W
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN-------VW 63

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNW-REEFLIQASPSDPENFPFV 121
           DTAGQE+F  L   +Y    C ++++DV    ++ N+ NW R+   +       EN P V
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV------CENIPIV 117

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           ++GNK D        V +++ KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 118 LVGNKVD--------VKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR-LT 168

Query: 179 NEPQ 182
           N+P 
Sbjct: 169 NDPN 172

Length = 215

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  100 bits (251), Expect = 2e-27
 Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 13/174 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +++++GDSGVGKT L+ ++ + +F + + +TIG DF  K ++ +     +QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD---PENFPFVVLGN 125
           R+Q++   +YR A    LVYD++  +S+ ++  W        S  D   PE    +++GN
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW-------VSDVDEYAPEGVQKILIGN 113

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           K   D    R V +++        G + +FETSA    N++ +F  + +  L+ 
Sbjct: 114 KA--DEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 98.8 bits (246), Expect = 1e-26
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 6/160 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-EDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +   +SF++L + RE+ L      D E+ P +++GNK D+
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVVS+++ +      GN P+ ETSAK   NV+  F
Sbjct: 119 E--DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 98.5 bits (246), Expect = 2e-26
 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG   VGK+SL  Q+V   F   Y  TI   F +K + ++ + + L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L   +  G    +LVY V   KSF+ +    ++ L        E+ P V++GNK+D+
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG---KESVPIVLVGNKSDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC----IAKNALKNEPQEEE 185
                R VS ++ K   A      + E+SAKE  NVE AFE     I K      P ++ 
Sbjct: 119 H--MERQVSAEEGKK-LAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKS 175

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 97.5 bits (243), Expect = 4e-26
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   ++R  +  +LV+ +  M+SF  L  +RE+ L      + +N P +++GNK D+
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +      V E       A +  + Y ETSAK   NV+  F
Sbjct: 118 EDKRQVSVEEAANL---AEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 97.6 bits (243), Expect = 8e-26
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q++   F ++Y  TI  D   K+   ++    L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-EDSYRKQCVIDEETCLLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R     + VY +    SF+ + ++RE+ L      D +  P +++GNK D+
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL---RVKDKDRVPMILVGNKCDL 122

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D  + R VS  + +   A    IP+ ETSAK+  NV+ AF
Sbjct: 123 D--SERQVSTGEGQE-LAKSFGIPFLETSAKQRVNVDEAF 159

Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 96.4 bits (240), Expect = 1e-25
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFTLQ--IWDT 64
            +  ++GD  VGK++L+  + +    F   Y  T G D + K V   D   +++  I+D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQE F  +    +       +VYDV    SF+N + W       +      + P V++G
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL---HTPGVLVG 117

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           NK D+     R V   +A+A  A    + ++ETSAKEG   EA F  +A+
Sbjct: 118 NKCDLTD--RREVDAAQAQAL-AQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 96.1 bits (240), Expect = 2e-25
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GD  VGKT L+  Y    F   Y  T+  +  + +V+ + +   L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
             L    Y   D  ++ + V+   SF+N    W  E +    P    N P +++G K D+
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPE-VKHFCP----NVPIILVGTKLDL 114

Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D      +S+KK +     +G         + Y E SA     V   FE   + AL 
Sbjct: 115 RNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 96.6 bits (241), Expect = 2e-25
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ 67
           +K++++GD G GKT L+  Y    F  +Y  T+  +++T  +Q  +  +  L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVT-TLQVPNGKIIELALWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREE---FLIQASPSDPENFPFVVL 123
           E +  L    Y   D  ++ Y V+   S DN  + W  E   F            P V++
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC--------PGTPIVLV 114

Query: 124 GNKTDVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           G KTD+    + V          V+ ++ ++   S G + Y E SAK   NV+  F+   
Sbjct: 115 GLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Query: 174 KNALKNE 180
             AL   
Sbjct: 175 NVALSKS 181

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 96.1 bits (239), Expect = 3e-25
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD GVGKT+L  Q     F   Y  TI  D   K+V  + +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + +L   + R  +  +LVY +    +F+ +  +RE+   +       + P +++GNK D 
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ-RVKDESAADVPIMIVGNKCDK 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                R VS ++  A  A +    + E SAK   NVE AF  + + AL+ + Q  
Sbjct: 119 V--YEREVSTEEGAA-LARRLGCEFIEASAKTNVNVERAFYTLVR-ALRQQRQGG 169

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 94.1 bits (234), Expect = 9e-25
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFL-IQASPSDPENFPFVVLGNKTD 128
           F S+   + +     ++VY +   ++F ++   R++ + ++      E  P +++GNK D
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY----EKVPIILVGNKVD 117

Query: 129 VDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
           ++       +E +A A  W       P+ ETSAK    V   F
Sbjct: 118 LESEREVSSAEGRALAEEWGC-----PFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 94.8 bits (236), Expect = 2e-24
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 24/178 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQI 61
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T   +++F         
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY-------C 66

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAGQE+F  L   +Y    C ++++DV    ++ N+  W  + L +      EN P V
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC----ENIPIV 121

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           + GNK DV    +R V  K+       K N+ Y+E SAK  +N E  F  +A+    +
Sbjct: 122 LCGNKVDV---KNRQVKAKQVTF--HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 91.4 bits (227), Expect = 8e-24
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +     VLVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +   A +    + ETSAK   NV   F
Sbjct: 119 E--DERVVGKEQGQN-LARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 90.8 bits (225), Expect = 4e-23
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLK +++GDS VGK  ++    +    + Y   +G D+ T  +  + R   LQ+WDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            RF ++  ++ RGA   +LVYD+    SFD ++ W +E + + +P  P+    +++GN+ 
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKE-IDEHAPGVPK----ILVGNRL 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            +     R V+ ++A+A+ A +  + +FE S    FN+  +F  +A+  L
Sbjct: 121 HL--AFKRQVATEQAQAY-AERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 89.0 bits (221), Expect = 8e-23
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           K++I+GD  VGK++L+N+ +  K S  +YK     +++T  ++ + + +   + DTAGQE
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNV-MKSF-DNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            + ++   +YR  +  + V+D+ + +    + L    +E +  A        P +++GNK
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA----ESGVPIILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+       +    A  +    G  P    SA+ G N+++AF+
Sbjct: 119 IDL---RDAKLKTHVAFLFAKLNGE-PIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 89.0 bits (220), Expect = 1e-22
 Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 7/141 (4%)

Query: 33  FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92
           F N Y++TIG DFL+K +  ++    LQ+WDTAGQERF+SL  ++ R +   ++VYD+  
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 93  MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152
            +SF+N   W ++ L +      ++    ++GNKTD+ G   +V  E+  +   A + N 
Sbjct: 65  RQSFENTTKWIQDILNERG----KDVIIALVGNKTDL-GDLRKVTYEEGMQK--AQEYNT 117

Query: 153 PYFETSAKEGFNVEAAFECIA 173
            + ETSAK G N++  F+ IA
Sbjct: 118 MFHETSAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 88.5 bits (219), Expect = 3e-22
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 14  LGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTKEVQFEDRLFTLQIWDTAGQE 68
           +GD G GKT+ + +++  +F  +Y AT+G       F T             +WDTAGQE
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR-----FNVWDTAGQE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y    C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 56  KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 110

Query: 129 VDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   V ++K KA   +   K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 111 --------VKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG SGVGK++L  +++ ++F  +Y+  + + + +++V  +    +L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FQS--LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +         R AD  VLVY +    SFD ++   +  LI+         P +++GNK 
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQ--LIREIKKRDGEIPVILVGNKA 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN-VEAAFECIAKNALK 178
           D+   +SR VS ++ +   A +    +FE SA E +  V+  F  + +   +
Sbjct: 118 DLL--HSRQVSTEEGQK-LALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 3e-19
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKTSL+  +   +F  +Y  T+  +++T + + + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128
           ++ L    Y  A   ++ + ++   S +N+   W EE   +  P    N P +++G K D
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR-RYCP----NVPVILVGLKKD 116

Query: 129 V--------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +        +      V  ++AK    + G   Y E SA  G  V+  FE   + AL
Sbjct: 117 LRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +     + TLQI DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCSKSICTLQITDTTGSHQ 61

Query: 70  FQSL-------GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           F ++       G AF       +LVY +   +S + L    E  + +   ++ E  P ++
Sbjct: 62  FPAMQRLSISKGHAF-------ILVYSITSKQSLEELKPIYEL-ICEIKGNNLEKIPIML 113

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +GNK   D   SR VS  +  A  A   N  + ETSAK   NV+  F+
Sbjct: 114 VGNKC--DESPSREVSSSEGAA-LARTWNCAFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 78.3 bits (193), Expect = 6e-18
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG S VGKT+++++++  +F  QY  TI  DF  K       ++ L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS-----PSDPENFPFVVLG 124
           F ++        D  +LV+ ++  +SF+ +   RE+ L   S       +    P V+ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           NK D D    R V   + +       N  YFE SAK+  N++  F  +   +L   P E
Sbjct: 121 NKADRD--FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF--SLAKLPNE 175

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 76.8 bits (189), Expect = 8e-18
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++ +G +GVGKT+L+ +++   F  +++ T+  +  +KE +      T+ I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++     +  D   LVY V+  +SF+ +   REE L           P VV+GNK  +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFV---PIVVVGNK--I 114

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D    R V    A +      N  + E SAK+  NV   F+
Sbjct: 115 DSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFK 155

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK+++  Q+++  F + +  TI  D    + + ++    L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDAYKTQARIDNEPALLDILDTAGQAE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  ++ Y V    SF   + ++ E + +   ++  + P V++GNK D+
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK-ELITRVRLTE--DIPLVLVGNKVDL 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +    R V+ ++ +   A + N P+FETSA   F ++ AF  + +   + E
Sbjct: 120 E--QQRQVTTEEGRN-LAREFNCPFFETSAALRFYIDDAFHGLVREIRRKE 167

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 8/177 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +V++LGDSGVGK+SL N +    + +      G D   + V  +    TL ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP-ENFPFVVLGNKT 127
               L  +  +  D  V+VY V    SF+       E  IQ   +   E+ P +++GNK+
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+    SR VS ++ +A CA   +  + ETSA    NV+  FE I +        +E
Sbjct: 117 DL--VRSREVSVQEGRA-CAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKE 170

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 72.9 bits (179), Expect = 9e-17
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ I+G+   GK++L+++Y+   +  Q ++  G  F  KEV  + +   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRF-KKEVLVDGQSHLLLIRDEGGA- 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
                   F    D  + V+ +    SF  +     +     + S+    P +++G +  
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISE---IPLILVGTQDA 110

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   N RV+ + +A+  CA      Y+ET A  G NVE  F+  A+
Sbjct: 111 ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + +   LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQD 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F  L    Y   D  +L + V    SF N+    E+++ +    +P   P +++G + D
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNI---SEKWIPEIRKHNP-KAPIILVGTQAD 115

Query: 129 ----------VDGGNSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFE 170
                     +     + VS+ +AKA  A K G   Y E SA    N++  F+
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKA-LAEKIGACEYIECSALTQKNLKEVFD 167

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 71.8 bits (176), Expect = 6e-16
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 29/186 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD----- 63
           ++V +LG  GVGKT+++ Q++ ++F  +Y  T         V    R++ L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
               TAGQE    RF+ L     R +   +LVYD+    SF  +   R++ L      + 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 116 ENFPFVVLGNKTDVDGGN---SRVVSEKKAKAW-CASKGNIPYFETSAKEGFNVEAAFEC 171
           E  P VV+GNK D          V+S    K+W C       Y E SAK  +++   F+ 
Sbjct: 116 EP-PIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG------YLECSAKYNWHILLLFKE 168

Query: 172 IAKNAL 177
           +  +A 
Sbjct: 169 LLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 21/186 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LGD   GKTSL+N +    F   Y+ T+  ++   ++  +     L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTD 128
           F  L    Y      +L + V+   S +N+ + W  E               V++  K D
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR-----HHCPGVKLVLVALKCD 115

Query: 129 VDGGNSRVVSEKK----------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +    +                 AK   A +    Y E SAK    V  AF   A+ AL 
Sbjct: 116 LREPRNERDRGTHTISYEEGLAVAKRINACR----YLECSAKLNRGVNEAFTEAARVALN 171

Query: 179 NEPQEE 184
             P   
Sbjct: 172 ARPPHP 177

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ +LGD+ +GKTSLM +YV  +F  +Y  T+G +F+ K +       T  IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++     + A   + ++D+    + +++  W      QA   +    P +V G K D
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR----QARGFNKTAIPILV-GTKYD 115

Query: 129 V----DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           +           ++ K+A+ + A     P    S     NV+  F+ +
Sbjct: 116 LFADLPPEEQEEIT-KQARKY-AKAMKAPLIFCSTSHSINVQKIFKFV 161

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.9 bits (161), Expect = 6e-14
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 18/173 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L+  +    F   Y  T+  +  T   + + +   L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E   +  P    N P +++G K+D
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCP----NTPVLLVGCKSD 116

Query: 129 --------VDGGNSRV--VSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFE 170
                    +  N R   VS ++ +      G   Y E SAK    +V   FE
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQE 68
           K++++G  GVGKTSL  Q +  KF     +T G +    ++   +R    L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + +    F       +LV+D+        +  W     I+A        P +++G   D
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWL--RQIKAFGGVS---PVILVGTHID 117

Query: 129 V 129
            
Sbjct: 118 E 118

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQ 67
           KV+++GD G GK+SL++Q V  +F  +     G      T EV  +  L    IWD  G+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLL--NIWDFGGR 58

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E  +   + F + AD  +LVYD+   +S + ++      L        +  P +++GNK 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAW-LPNLRKLGGKI-PVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    YRGAD  +L + +    S++N L  W  E L   +P      P V++G K 
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPE-LRHYAP----GVPIVLVGTKL 115

Query: 128 D--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D         D   +  ++  + +      G   Y E S+K   NV+A F+   K  L
Sbjct: 116 DLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-------------EDR 55
           ++V+++GDSGVGK+SL++  V      +   TIG     K + +              +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
            F +++WD +G ER++     FY   +  + V+D++  ++  +L  W  E     + S P
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 116 EN--------FPFVVLGNKTDVDGGNSRVVSEKK----AKAWCASKGNIPYFE 156
                      P++V+GNK D+        S       A+ W   +G +P  E
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSE 194

Length = 334

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +  L    Y   D  ++ + ++   S +N+   W  E      P    N P +++GNK D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCP----NVPIILVGNKKD 116

Query: 129 VDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +      +          V  ++ +A     G   Y E SAK    V   FE   + AL
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF N+   +EE++ +     P N P++++G + D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPYLLIGTQID 115

Query: 129 V 129
           +
Sbjct: 116 L 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-----EDRLFTLQIWD 63
           +KV++LGDSGVGK+SL++     +       T+G     +   +     E++ F +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 64  TAGQ----ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREE----------FLIQ 109
             G     E  +S    FY   +  + V+D+   KS  NL  W  E           L+ 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 110 ASPSDPENF-----PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156
               D E F     P +V+G K D      R     +  A+ +   N     
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRT-AFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 60.3 bits (146), Expect = 8e-12
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G  T 
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVG--TQ 114

Query: 129 VDGGNSRVVSEKKAK 143
           +D  +     EK AK
Sbjct: 115 IDLRDDPSTIEKLAK 129

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQY-----KATIGADFLTKEVQFEDRLFTLQIWD 63
           ++++++GD GVGK+SL+   V+ +F         + TI AD         +R     I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV------TPER-VPTTIVD 55

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           T+ + + ++   A  R A+   LVY V+   + + +        +          P +++
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERI----RTKWLPLIRRLGVKVPIILV 111

Query: 124 GNKTD-VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           GNK+D  DG +   + E+        +      E SAK   NV   F    K  L
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 166

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E +    P    N P +++G K 
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 115

Query: 128 DV--DGGNSRVVSEKK--------AKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 116 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 168

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG  G GKT+++ + +          TIG  F  + V++++      +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYK-LKLGEVVTTIPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   +Y   D  + V D +  +  +   N   + L +    + +  P ++L NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNE---EELKGAPLLILANKQDL 112

Query: 130 DGGNS-RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            G  +   + E         +        SA  G  ++   + + + 
Sbjct: 113 PGALTESELIELLGLESIKGR-RWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 58.9 bits (142), Expect = 3e-11
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 24/188 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  + +   + R  +L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   +  ++ + +    S++N+ + W  E +    P    N P +++G K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPE-VCHHCP----NVPILLVGTKK 117

Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSA------KEGFNVEAAFEC 171
           D+      +          ++ ++  A       + Y E SA      KE F  EA    
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFA-EAVRAV 176

Query: 172 IAKNALKN 179
           +    +K+
Sbjct: 177 LNPTPIKD 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 13  ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72
           ++G    GKT+L+N   + +FS     T+G  F  ++V   +   T+++WD  GQ RF+S
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGN--VTIKVWDLGGQPRFRS 59

Query: 73  LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132
           +   + RG +  V V D    +  +   N   + L + S    E  P +VLGNK D+ G 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGA 116

Query: 133 NSRV-------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            S         +     +           +  SAKE  N++   + + K+
Sbjct: 117 LSVDELIEQMNLKSITDREVSC-------YSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 55.1 bits (132), Expect = 9e-10
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N   +++G K+D
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKMLLVGCKSD 120

Query: 129 --------VDGGNSRV--VSEKKAKAWCASKGNIPYFETSAKEGFN 164
                   V+  N R   VS  +        G   Y E SA +  N
Sbjct: 121 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG    GKT+++ +    +       TIG  F  + V +++      +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVT-TIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             + L   ++   D  + V D       D +   +EE     +  +  + P ++L NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSA---DRDRIEEAKEELHALLNEEELADAPLLILANKQD 126

Query: 129 VDG 131
           + G
Sbjct: 127 LPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIW 62
           V+ILG    GKT+ + Q    KFS  YK         T+G +  T EV        L  W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKA----RLMFW 56

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  GQE  +SL   +Y  A+   ++Y ++     +  N  +  F    +    E  P +V
Sbjct: 57  DLGGQEELRSLWDKYY--AESHGVIYVIDSTDR-ERFNESKSAFEKVINNEALEGVPLLV 113

Query: 123 LGNKTDVDG 131
           L NK D+  
Sbjct: 114 LANKQDLPD 122

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 73

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  + FD+ L  WR E L    PS       +++G KTD
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEIL-DYCPST----RILLIGCKTD 128

Query: 129 V 129
           +
Sbjct: 129 L 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 25/165 (15%)

Query: 10  KVIILGDSGVGKTSLMNQYVNR------------KFSNQYKATIGADFLTKEVQFEDRLF 57
           K++++G  G GKT+ +    ++                +   T+  DF + E+   D   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            + ++ T GQERF+ +     RGA   +++ D +   +F        E +I    S    
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF------HAEEIIDFLTSR-NP 121

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162
            P VV  NK D+         EK  +A      ++P  E  A EG
Sbjct: 122 IPVVVAINKQDLFDALP---PEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 9   LKVIILGDSGVGKTSLM-----NQYVNRKFSNQYKATIGADFLTKEVQF---EDRLFTLQ 60
           L +++LG    GKT+++     N++VN         T G  F T++++      +  T  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTV------PTKG--FNTEKIKVSLGNAKGVTFH 55

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYD-VNVMKSFDNLNNWREEFLIQASPSDPENFP 119
            WD  GQE+ + L  ++ R  D  V V D V+V    + +   + E       S+ +  P
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----ERMEEAKTELHKITKFSENQGVP 111

Query: 120 FVVLGNKTDVDGGNSRVVSE 139
            +VL NK D+   N+  VSE
Sbjct: 112 VLVLANKQDL--PNALPVSE 129

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD---FLTKEVQFEDRLFTLQIWDTAG 66
           KVII+G    GKT+++ Q++          TIG++    + K ++F        +WD  G
Sbjct: 17  KVIIVGLDNAGKTTILYQFL-LGEVVHTSPTIGSNVEEIVYKNIRFL-------MWDIGG 68

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLG 124
           QE  +S    +Y   D  +LV D     S D   L   +EE     +  D      +VL 
Sbjct: 69  QESLRSSWNTYYTNTDAVILVID-----STDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123

Query: 125 NKTDVDGGNSRV-VSEK------KAKAW-----CASKG 150
           NK D+ G  +   +SE       +   W     CA  G
Sbjct: 124 NKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++LG    GK++L+ +  + +       T+G  F  + +Q E +  +L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP--ENFPFVVLGNKT 127
            +++   +    D  V V D +     D      +  L      +   +  P V+L NK 
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHIL-----KNEHIKGVPVVLLANKQ 111

Query: 128 DVDGG-NSRVVSEK-KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+ G   +  ++ + K K +C+ + +      SA  G  +  AF  +A 
Sbjct: 112 DLPGALTAEEITRRFKLKKYCSDR-DWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD+  GKT+L++ +    +   Y  T+  ++ T   + +     L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREE 105
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE 98

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 32/176 (18%)

Query: 10  KVIILGDSGVGKTSL-----MNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +++ILG  G GKT++     + + V          TIG  F  + V +++  F  Q+WD 
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV------TTIPTIG--FNVETVTYKNLKF--QVWDL 50

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
            GQ   +     +Y  ++   ++Y V+     D L   + E        + ++   +V  
Sbjct: 51  GGQTSIRPYWRCYY--SNTDAIIYVVDSTDR-DRLGISKSELHAMLEEEELKDAVLLVFA 107

Query: 125 NKTDVDGGNSRV-VSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           NK D+ G  S   V+EK      K + W      I  F+TSA +G  ++   + + 
Sbjct: 108 NKQDMPGALSEAEVAEKLGLSELKDRTW-----QI--FKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
              R  +++++LG    GKT+++ Q  +   S     T G  F  K VQ +   F L +W
Sbjct: 10  PSSRQEVRILLLGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKNVQADG--FKLNVW 64

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  GQ + +     ++   D  + V D    K F+       E L +   +     P +V
Sbjct: 65  DIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLA---GVPVLV 121

Query: 123 LGNKTDV 129
             NK D+
Sbjct: 122 FANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRK--FSN-------QYKATIGADFLTKEVQFEDRLFTLQ 60
           KV+++G  G GK+S+      R   FSN       +  ATI    + +         TL 
Sbjct: 1   KVLLMGLRGSGKSSM------RSIIFSNYSPRDTLRLGATID---VEQSHVRFLGNLTLN 51

Query: 61  IWDTAGQERFQSLGVAFYRGA---DCCVLVY--DVNVMKSFDNLNNWRE--EFLIQASPS 113
           +WD  GQ+ F    +   +     +  VL+Y  DV   +  ++L    +  E L Q SP 
Sbjct: 52  LWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSP- 110

Query: 114 DPENFPFVVLGNKTD 128
              N    VL +K D
Sbjct: 111 ---NAKVFVLIHKMD 122

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 53/208 (25%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT--------------IGADFLTKEVQFE 53
            +K +++GD+ VGKT L+      K   QY+                +  + L +     
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 54  DRLF-TLQIWDTAG----QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFL 107
           D +  +L++WDT G      RF     A+ R +D  +L + +    S  N+   W  E +
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPE-I 114

Query: 108 IQASPSDPENFPFVVLGNKTDV-----------------DGGNSRVVSEKKAKAWCASKG 150
               P  P     +++G K D+                    N+ ++  +  +A  A + 
Sbjct: 115 RHFCPRVPV----ILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV-AKEL 169

Query: 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178
            IPY+ETS    F V+  F+    NA++
Sbjct: 170 GIPYYETSVVTQFGVKDVFD----NAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 36/163 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA--------DFLTKEVQFEDRLFTLQ 60
           ++++++G    GKT+++           YK  +G          F  + V +++  FT  
Sbjct: 14  MRILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVETVTYKNISFT-- 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WD  GQ++ + L   +Y      + V D N     D ++  REE     +  +  +   
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN---DRDRIDEAREELHRMLNEDELRDAVI 117

Query: 121 VVLGNKTDV-DGGNSRVVSEK------KAKAW-----CASKGN 151
           +V  NK D+ D   +  ++EK      + + W     CA+ G+
Sbjct: 118 LVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 6  RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
          R +    +LG  G GK++L+  ++ R FS N Y  TI   +    V+   +   L + + 
Sbjct: 2  RNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREV 61

Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSF 96
             E    L  A     D   LVYD +   SF
Sbjct: 62 GEDEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+ LG  G GKT+++ +    +F  Q   TIG  F  + V++++  FT  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIG--FNVETVEYKNLKFT--IWDVGGKHK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   +Y      V V D +     D ++    E     +  +  +   ++  NK DV
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSS---HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112

Query: 130 DGG 132
            G 
Sbjct: 113 AGA 115

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG  G GKTSL++   + +       T G  F +  +  +D    +++ +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQD--AIMELLEIGGSQNL 57

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF--LIQASPSDPENFPFVVLGNKTD 128
           +     +  G+    L++ V+   S   L   R+E   L+Q  P      P VVL NK D
Sbjct: 58  RKYWKRYLSGSQ--GLIFVVDSADSER-LPLARQELHQLLQHPPD----LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 57/207 (27%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
           A +  +L   LKV+I G   VGK+SL+N  +  +     +A I     G   D + + + 
Sbjct: 206 ARQGEILREGLKVVIAGRPNVGKSSLLNALLGEE-----RA-IVTDIAGTTRDVIEEHIN 259

Query: 52  FEDRLFTLQIWDTAG------------QER-FQSLGVAFYRGADCCVLVYDVNVMKSFDN 98
            +     L   DTAG             ER  +++       AD  +LV D +   + ++
Sbjct: 260 LDGIPLRLI--DTAGIRETDDEVEKIGIERSREAI-----EEADLVLLVLDASEPLTEED 312

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
                E           ++ P +V+ NK D+ G           +     +   P    S
Sbjct: 313 DEILEE----------LKDKPVIVVLNKADLTG-----------EIDLEEENGKPVIRIS 351

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEEE 185
           AK G  ++   E I + A       +E
Sbjct: 352 AKTGEGIDELREAIKELAFGGFGGNQE 378

Length = 449

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 50  VQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN--VMKSFDNLNNWREEFL 107
           V+FE     +   DT G E F    V     AD  +LV D N  V            E L
Sbjct: 55  VEFEWPKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQT-------REHL 107

Query: 108 IQASPSDPENFPFVVLGNKTDVDGGN------SRVVSEKKAKAWCASKG-NIPYFETSAK 160
             A        P +V  NK D  G          +    K   +   KG ++P    SA 
Sbjct: 108 NIALAGGL---PIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISAL 164

Query: 161 EGFNVEA 167
            G  +E 
Sbjct: 165 TGEGIEE 171

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL 99
           TIG  F  + V++++  FT  +WD  GQ++ + L   +Y+  +  + V D N     + +
Sbjct: 48  TIG--FNVETVEYKNLKFT--MWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN---DRERI 100

Query: 100 NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VSEK 140
            + REE     S  +  +   +V  NK D+    S   V+EK
Sbjct: 101 GDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEK 142

Length = 182

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 44/176 (25%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA------DFLTKEVQFEDRLFTLQIW 62
           LKV+I+G   VGK+SL+N  + R      +A +        D +  E         +++ 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRD-----RAIVTDIAGTTRDVI--EEDINLNGIPVRLV 270

Query: 63  DTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS 111
           DTAG        ER   +G+         AD  + V D +       L+      +    
Sbjct: 271 DTAGIRETDDVVER---IGIERAKKAIEEADLVLFVLDAS-----QPLDKEDLALIELL- 321

Query: 112 PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167
              P+  P +V+ NK D        +  K                 SAK G  ++A
Sbjct: 322 ---PKKKPIIVVLNKAD--------LVSKIELESEKLANGDAIISISAKTGEGLDA 366

Length = 454

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 49/186 (26%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G   VGK+SL+N    R      +A I     G   D + +E+        +++
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRD-----RA-IVSDIAGTTRDVIEEEIDLGG--IPVRL 55

Query: 62  WDTAGQ-------ERFQSLGV--AFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQA 110
            DTAG        E+   +G+  A      AD  +LV D +  +  D      E+  I  
Sbjct: 56  IDTAGLRETEDEIEK---IGIERAREAIEEADLVLLVVDAS--EGLDE-----EDLEILE 105

Query: 111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            P+     P +V+ NK+D+                 +     P    SAK G  ++   E
Sbjct: 106 LPAKK---PVIVVLNKSDL----------LSDAEGISELNGKPIIAISAKTGEGIDELKE 152

Query: 171 CIAKNA 176
            + + A
Sbjct: 153 ALLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 40/165 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYK----------ATIGADFLTKEVQFEDRLFT 58
           ++++++G    GKT+++           YK           TIG  F  + V++++  FT
Sbjct: 1   MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIG--FNVETVEYKNISFT 47

Query: 59  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF 118
             +WD  GQ++ + L   +++     + V D N     + +   REE     +  +  + 
Sbjct: 48  --VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN---DRERIGEAREELQRMLNEDELRDA 102

Query: 119 PFVVLGNKTDVDGG-NSRVVSEK------KAKAW-----CASKGN 151
             +V  NK D+    ++  V++K      + + W     CA+ G+
Sbjct: 103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG    GKT+++NQ    K SN     I          F+    +   +D +GQ ++
Sbjct: 2   ILVLGLDNSGKTTIINQL---KPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKY 58

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNN--WREEF--LIQASPSDPENFPFVVLGNK 126
           + L   +Y+     + V D     S D L     ++E   L+          P +   NK
Sbjct: 59  RGLWEHYYKNIQGIIFVID-----SSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANK 113

Query: 127 TDVDGGNSRV 136
            D+    + V
Sbjct: 114 MDLPDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG-Q 67
            ++I+G  G GKT+L                 I  + + +EV  +  L  +     +G  
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E    L +A  R     VL+ D        +L +  +E L+                N T
Sbjct: 64  ELRLRLALALARKLKPDVLILD-----EITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 36/181 (19%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAG 66
           +++++LG    GKT+++     +KF+ +  +TI     F  K +++    + L IWD  G
Sbjct: 15  MRILMLGLDNAGKTTIL-----KKFNGEDISTISPTLGFNIKTLEYNG--YKLNIWDVGG 67

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-----WREEFLIQASPSDPENFPFV 121
           Q+  +S    ++   D  + V D +     ++          EE L  A+         +
Sbjct: 68  QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGAT--------LL 119

Query: 122 VLGNKTDVDG-------GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  NK D+ G            +   K+  W         F  SA  G N+    + +  
Sbjct: 120 IFANKQDLPGALSPEEIREVLELDSIKSHHWRI-------FGCSAVTGENLLDGIDWLVD 172

Query: 175 N 175
           +
Sbjct: 173 D 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-DFLTKEVQFE--DRLFTLQIWDTAG 66
           +V ++G   VGK++L+N     K      A +      T++           + + DT G
Sbjct: 1   RVALVGRPNVGKSTLINALTGAK-----VAIVSDYPGTTRDPILGVLGLGRQIILVDTPG 55

Query: 67  --QERFQSLGVAFY-------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
             +   +  GV  +       R AD  +LV D +     + L    EE L +        
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDAS-----EGLTEDDEEILEELEKLP--K 108

Query: 118 FPFVVLGNK 126
            P +++ NK
Sbjct: 109 KPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.96
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
PTZ00099	176	rab6; Provisional	99.95
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.95
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.94
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
PRK12297	424	obgE GTPase CgtA; Reviewed	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
PRK12298	390	obgE GTPase CgtA; Reviewed	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.92
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.92
COG1159	298	Era GTPase [General function prediction only]	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
PRK00089	292	era GTPase Era; Reviewed	99.92
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.92
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.91
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.91
CHL00189	742	infB translation initiation factor 2; Provisional	99.91
PRK05306	787	infB translation initiation factor IF-2; Validated	99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.89
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
PRK05433	600	GTP-binding protein LepA; Provisional	99.89
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.89
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.88
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.88
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.88
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.88
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK10218	607	GTP-binding protein; Provisional	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.87
COG0218	200	Predicted GTPase [General function prediction only	99.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.87
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.87
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PRK04004	586	translation initiation factor IF-2; Validated	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.86
COG2262	411	HflX GTPases [General function prediction only]	99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.85
PRK12736	394	elongation factor Tu; Reviewed	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.85
PRK12735	396	elongation factor Tu; Reviewed	99.85
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.85
CHL00071	409	tufA elongation factor Tu	99.84
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.84
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.83
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.83
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.83
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.82
PLN00043	447	elongation factor 1-alpha; Provisional	99.82
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.82
PRK00049	396	elongation factor Tu; Reviewed	99.82
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.82
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.81
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.81
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.81
COG1084	346	Predicted GTPase [General function prediction only	99.81
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.8
PLN03126	478	Elongation factor Tu; Provisional	99.8
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.8
PLN03127	447	Elongation factor Tu; Provisional	99.8
PTZ00141	446	elongation factor 1- alpha; Provisional	99.8
COG0536	369	Obg Predicted GTPase [General function prediction	99.8
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.8
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.79
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.79
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.79
KOG1145	683	consensus Mitochondrial translation initiation fac	99.78
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.78
COG1163	365	DRG Predicted GTPase [General function prediction	99.77
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.77
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.77
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.77
COG3596	296	Predicted GTPase [General function prediction only	99.77
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.76
PRK13351	687	elongation factor G; Reviewed	99.76
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.76
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.76
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.74
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.73
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.72
PRK12739	691	elongation factor G; Reviewed	99.72
PRK09602	396	translation-associated GTPase; Reviewed	99.71
KOG0090	238	consensus Signal recognition particle receptor, be	99.71
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.7
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.7
PRK09866	741	hypothetical protein; Provisional	99.69
PRK00007	693	elongation factor G; Reviewed	99.67
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.67
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.65
PRK12740	668	elongation factor G; Reviewed	99.65
PRK14845	1049	translation initiation factor IF-2; Provisional	99.64
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.62
PTZ00258	390	GTP-binding protein; Provisional	99.62
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.62
PRK13768	253	GTPase; Provisional	99.62
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.61
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.61
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.61
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.61
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.59
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.59
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.58
PRK07560	731	elongation factor EF-2; Reviewed	99.58
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.58
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.57
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.57
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.57
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.56
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.56
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.55
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.55
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.54
PTZ00416	836	elongation factor 2; Provisional	99.54
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
KOG0410	410	consensus Predicted GTP binding protein [General f	99.53
PRK09601	364	GTP-binding protein YchF; Reviewed	99.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.51
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.49
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.48
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.48
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.48
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.48
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.46
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.44
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.43
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.41
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.41
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.4
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.4
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.37
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.37
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.35
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.34
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.34
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.34
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.34
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.32
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.3
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.29
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.28
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.26
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.22
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.2
KOG1143	591	consensus Predicted translation elongation factor	99.16
KOG0460	449	consensus Mitochondrial translation elongation fac	99.14
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.11
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.11
KOG2486	320	consensus Predicted GTPase [General function predi	99.09
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	99.07
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.01
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.01
PRK12289	352	GTPase RsgA; Reviewed	99.0
PRK00098	298	GTPase RsgA; Reviewed	98.96
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.95
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.95
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.95
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.93
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.91
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.9
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.89
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.89
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.86
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.84
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.82
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.81
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.8
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.79
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.78
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.77
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.74
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.74
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.73
COG1161	322	Predicted GTPases [General function prediction onl	98.73
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.71
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.71
PRK10416	318	signal recognition particle-docking protein FtsY;	98.7
cd03112	158	CobW_like The function of this protein family is u	98.69
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.68
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.68
PRK14974	336	cell division protein FtsY; Provisional	98.68
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.67
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.65
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.64
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.62
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.62
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.62
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.59
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.56
PRK01889	356	GTPase RsgA; Reviewed	98.52
PRK12288	347	GTPase RsgA; Reviewed	98.51
PRK13796	365	GTPase YqeH; Provisional	98.46
PRK13796	365	GTPase YqeH; Provisional	98.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.46
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.46
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.45
PRK12289	352	GTPase RsgA; Reviewed	98.45
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.39
COG1162	301	Predicted GTPases [General function prediction onl	98.33
COG3523	1188	IcmF Type VI protein secretion system component Va	98.32
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.28
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.26
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.26
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.24
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.23
PRK00098	298	GTPase RsgA; Reviewed	98.22
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.22
cd03114	148	ArgK-like The function of this protein family is u	98.21
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.2
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.19
COG0523	323	Putative GTPases (G3E family) [General function pr	98.19
cd03110	179	Fer4_NifH_child This protein family's function is	98.19
TIGR00959	428	ffh signal recognition particle protein. This mode	98.17
PRK10867	433	signal recognition particle protein; Provisional	98.17
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.16
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.14
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.13
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.11
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.05
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.04
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.03
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.03
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.02
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.02
COG1162	301	Predicted GTPases [General function prediction onl	98.0
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.0
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.96
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.95
PRK13695	174	putative NTPase; Provisional	97.94
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.94
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.88
KOG2484	435	consensus GTPase [General function prediction only	97.88
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.87
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.86
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.85
KOG1533	290	consensus Predicted GTPase [General function predi	97.85
PRK08118	167	topology modulation protein; Reviewed	97.85
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.81
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.78
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.78
PRK07261	171	topology modulation protein; Provisional	97.78
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.75
PF05729	166	NACHT: NACHT domain	97.74
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.72
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.69
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.68
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.67
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.64
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.59
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.59
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.58
PRK06217	183	hypothetical protein; Validated	97.57
PF00004	132	AAA: ATPase family associated with various cellula	97.56
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.56
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.54
PRK03839	180	putative kinase; Provisional	97.53
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.53
PRK05480	209	uridine/cytidine kinase; Provisional	97.53
smart00382	148	AAA ATPases associated with a variety of cellular	97.53
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.53
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.52
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.51
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.51
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.51
PRK14530	215	adenylate kinase; Provisional	97.51
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.49
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.49
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.49
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.48
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.48
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.48
KOG0052	391	consensus Translation elongation factor EF-1 alpha	97.47
PRK13949	169	shikimate kinase; Provisional	97.47
PTZ00088	229	adenylate kinase 1; Provisional	97.47
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.47
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.47
PRK14737	186	gmk guanylate kinase; Provisional	97.45
PRK14738	206	gmk guanylate kinase; Provisional	97.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.44
PRK14531	183	adenylate kinase; Provisional	97.44
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.42
PRK05057	172	aroK shikimate kinase I; Reviewed	97.42
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.42
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.41
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.41
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.41
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.4
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.39
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.39
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.39
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.39
PRK07429	327	phosphoribulokinase; Provisional	97.38
PRK08233	182	hypothetical protein; Provisional	97.38
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	97.37
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.37
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.37
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.37
PRK14532	188	adenylate kinase; Provisional	97.37
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.36
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.36

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.7e-40  Score=214.59  Aligned_cols=181  Identities=82%  Similarity=1.265  Sum_probs=173.0

Q ss_pred             CCc-cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc
Q 029929            1 MAS-RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (185)
Q Consensus         1 m~~-~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   79 (185)
                      |+. +++..++|+++|.+|+|||||++++...++...+..+++.++..+.+.+++..+.+++|||+|+++|+++...+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            655 4577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++|||++++++|+.+..|.++++.+..+..+...|+||++||+|+.+...++++...++.++...+++|++++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999999999999999999999999999887779999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcCC
Q 029929          160 KEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      |...|+.++|..+.+.++..+.
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccc
Confidence            9999999999999999988765

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-39  Score=211.03  Aligned_cols=173  Identities=42%  Similarity=0.733  Sum_probs=162.2

Q ss_pred             CccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccC
Q 029929            2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (185)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   81 (185)
                      ...-.+.|||+|+|..|+|||.|+.+|....+.+.+..|++.++....+.+++..+++++|||+||++|+.....+++.+
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            44457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc-EEEeeec
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSAK  160 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~  160 (185)
                      |++|+|||+++.+||..+..|+.++.++...    ++|.++|+||+|+.+.  +.+..++++.|+..++ .+ ++++||+
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSAK  155 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSAK  155 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-CcceeecccC
Confidence            9999999999999999999999999877655    7899999999999887  8899999999999888 66 9999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCC
Q 029929          161 EGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ++.++++.|..|...+..+..
T Consensus       156 ~~~NVe~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRKG  176 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhcc
Confidence            999999999999998887654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-38  Score=206.42  Aligned_cols=171  Identities=45%  Similarity=0.755  Sum_probs=160.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|..++|||||+.++..+.+.+...+|++.-+....+.+++..+++.+|||+|+++++.+...|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||+++.+||..++.|..++.+..++    ++-+.+|+||+||...  +++..++...++...+ ..++++||+++.|+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV  155 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence            999999999999999999999877653    6667789999999985  8899999999999988 99999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcc
Q 029929          166 EAAFECIAKNALKNEPQE  183 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~  183 (185)
                      +++|..|.+.++...++.
T Consensus       156 ~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             HHHHHHHHHhccCccccc
Confidence            999999999999877654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-37  Score=203.18  Aligned_cols=171  Identities=41%  Similarity=0.727  Sum_probs=161.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      -...++|+++|.+++|||+++.+|..+.+...+..|.+.++....+..++..+.+++|||+||+.++.+...|++.|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|||+++..+|+++..|+..+.++...    .+|.++|+||+|+...  +++..+..++++..++ ++|+++||++|.|
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~N  161 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNFN  161 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCCC
Confidence            9999999999999999999999877665    7899999999999885  8999999999999997 9999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      +.+.|-.|++.+..+..+
T Consensus       162 I~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  162 IEEAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHHHHhhcch
Confidence            999999999999976543

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.6e-36  Score=206.37  Aligned_cols=169  Identities=31%  Similarity=0.566  Sum_probs=150.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|..|+|||||+.++....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999998887777778888887777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++++++++.+..|+.++....     ++.|+++|+||+|+...  +.+..++++.++...+ +++++|||++|.|+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V  155 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI  155 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence            9999999999999999999997653     26899999999999764  5677888999988876 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCc
Q 029929          166 EAAFECIAKNALKNEPQ  182 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~~  182 (185)
                      +++|++|++.+..+.+.
T Consensus       156 ~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         156 TESFTELARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999988876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.5e-36  Score=208.35  Aligned_cols=165  Identities=38%  Similarity=0.685  Sum_probs=146.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+....    ..+.|+++|+||+|+...  +++..++..+++.....+.++++||++|.|++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~----~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence            9999999999999988775543    236899999999999754  6677778888887754488999999999999999


Q ss_pred             HHHHHHHHhhc
Q 029929          169 FECIAKNALKN  179 (185)
Q Consensus       169 ~~~i~~~~~~~  179 (185)
                      |.+|++.+.++
T Consensus       155 F~~l~~~~~~~  165 (202)
T cd04120         155 FLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-37  Score=199.68  Aligned_cols=168  Identities=40%  Similarity=0.632  Sum_probs=155.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+|++++|..++||||||.+++...+...+..|+|.++....+.+.+..+.+++|||+||++|+.+...|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||+++..+|+...+|+..+..   ..+..++-+++|+||.||.++  ++...++....+..++ +.|+++||+.|+|++
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~---e~gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk  174 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRR---ERGSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK  174 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHh---ccCCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence            9999999999999999998864   333435678899999999987  8888999998888888 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      ++|..|..+++...
T Consensus       175 ~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  175 QLFRRIAAALPGME  188 (221)
T ss_pred             HHHHHHHHhccCcc
Confidence            99999999888764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=8.7e-36  Score=205.62  Aligned_cols=171  Identities=39%  Similarity=0.730  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888998888877777777 7788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      ||++++++++.+..|+..+..........++|+++|+||+|+...  +....+++..++...+..+++++||++|.|+++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            999999999999999888876543333347899999999999753  456677888888877657899999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 029929          168 AFECIAKNALKNEP  181 (185)
Q Consensus       168 ~~~~i~~~~~~~~~  181 (185)
                      ++++|++.+....+
T Consensus       159 ~f~~l~~~l~~~~~  172 (201)
T cd04107         159 AMRFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHHHhch
Confidence            99999999887643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-36  Score=193.19  Aligned_cols=168  Identities=39%  Similarity=0.683  Sum_probs=157.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+|++++|..|+|||.|+.+++...+.+....|.+.++....+.+++..+++++|||+|++.|++....|++.+.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++.+++|..+..|+..+..+..    ++..+++++||+||...  +++..++.+.|+...+ ..++++||++++|+
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~----~NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~V  156 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSN----ENMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAENV  156 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcC----CCcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhhH
Confidence            99999999999999999999987753    38889999999999877  7999999999999976 88999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      +|.|..+...+.+..
T Consensus       157 EEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  157 EEAFINTAKEIYRKI  171 (216)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877653

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=6.3e-35  Score=195.77  Aligned_cols=164  Identities=37%  Similarity=0.663  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988887778888888777778888889999999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+.....    ++.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e  154 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED  154 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999888765432    36799999999999765  4566777778877665 8999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      ++.++++.+.+
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.4e-35  Score=197.61  Aligned_cols=167  Identities=22%  Similarity=0.451  Sum_probs=145.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|..|+|||||++++....+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999998888888887655 456778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|||++++++++.+ ..|...+....     ++.|+++|+||+|+...          ..+.+..+++.+++...+.++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  156 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY  156 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence            99999999999997 78998887654     26799999999998642          1245788899999998885589


Q ss_pred             EEeeeccCCC-HHHHHHHHHHHHhh
Q 029929          155 FETSAKEGFN-VEAAFECIAKNALK  178 (185)
Q Consensus       155 ~~~s~~~~~~-i~~~~~~i~~~~~~  178 (185)
                      ++|||++|.| ++++|..+++.+.+
T Consensus       157 ~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         157 IECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             EECCcCCCCCCHHHHHHHHHHHHhc
Confidence            9999999998 99999999987654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.7e-35  Score=187.39  Aligned_cols=169  Identities=34%  Similarity=0.619  Sum_probs=155.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|..|+|||||+.+|....+.+....+++.++..+.+.+++..+++.+|||+|+++|+.+...|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            34599999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++.+++|..+..|+.++..+....   ++-.++|+||+|..+.  +.+..++..+|+...+ +-|+++||++.+|+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V  162 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV  162 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence            9999999999999999999988665443   6677899999997654  8899999999999887 89999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      +..|+.++.++.+-+
T Consensus       163 ~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  163 QCCFEELVEKIIETP  177 (209)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            999999999998653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.2e-34  Score=194.50  Aligned_cols=165  Identities=42%  Similarity=0.739  Sum_probs=145.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            45899999999999999999999999888888888888877778888888899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE  154 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999998876532    36799999999999864  4556677777777666 799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      +++.++.+++..
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.2e-34  Score=195.27  Aligned_cols=167  Identities=25%  Similarity=0.490  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||||+..+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877778876544 44566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      ||++++++++.+..|...+.....   ..++|+++|+||+|+.+.  +.+..++...++...+ +++++|||++|.|+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~  154 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRL---TEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD  154 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence            999999999999888777765432   236899999999999764  5567778888887776 8999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 029929          168 AFECIAKNALKNEP  181 (185)
Q Consensus       168 ~~~~i~~~~~~~~~  181 (185)
                      +|++|++.+.++..
T Consensus       155 ~f~~l~~~~~~~~~  168 (172)
T cd04141         155 AFHGLVREIRRKES  168 (172)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998887543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=9.7e-35  Score=195.62  Aligned_cols=163  Identities=32%  Similarity=0.563  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||+.++....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888889887655 455677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      |++++++|+.+ ..|...+....     .+.|+++|+||+|+.+..        .+.+..++...++...+..++++|||
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  155 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS  155 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence            99999999998 67988886543     268999999999996532        13467888889988887346999999


Q ss_pred             ccCCCHHHHHHHHHHHHh
Q 029929          160 KEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~  177 (185)
                      ++|.|++++|+.+++.+.
T Consensus       156 k~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         156 KTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CcccCHHHHHHHHHHHHh
Confidence            999999999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.1e-34  Score=197.12  Aligned_cols=167  Identities=24%  Similarity=0.499  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999998888888887655 34456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEE
Q 029929           88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ||++++++++.+. .|...+....     ++.|+++|+||+|+.+...          +.+..++...++...+.+++++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  156 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE  156 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999996 5777665432     2689999999999965421          2345667888888777568999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcC
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +||++|.|++++|.++++.+....
T Consensus       157 ~SAk~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         157 CSALNQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             eCCCCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999888654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.6e-34  Score=193.48  Aligned_cols=168  Identities=56%  Similarity=1.006  Sum_probs=147.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|++|+|||||++++.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34569999999999999999999999988877778888777777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|||++++++++.+..|...+..........+.|+++|+||+|+..   +....+++.+++...+..+++++||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  158 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATN  158 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence            99999999999999999999887766544445789999999999873   456677888888877756899999999999


Q ss_pred             HHHHHHHHHHH
Q 029929          165 VEAAFECIAKN  175 (185)
Q Consensus       165 i~~~~~~i~~~  175 (185)
                      +.++++++++.
T Consensus       159 v~~~~~~~~~~  169 (170)
T cd04116         159 VAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.2e-34  Score=194.71  Aligned_cols=167  Identities=46%  Similarity=0.724  Sum_probs=143.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------CcEEEEEEecCCChhhhcccccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA   76 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~   76 (185)
                      +.+||+++|++|||||||++++.+..+...+.++.+.++....+.+.          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999999888888888877766666554          35688999999999999999999


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.+|++++|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+.+.  +....++...++...+ +++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e  156 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE  156 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence            99999999999999999999999999988865532   236799999999999764  4556677888888776 89999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +||++|.|+++++++|.+.+.++
T Consensus       157 ~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         157 TSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.7e-34  Score=194.15  Aligned_cols=163  Identities=23%  Similarity=0.446  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|..|+|||||++++....+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6999999999999999999999998888888887665 356778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+ ..|...+....     ++.|+++|+||+||...          ..+.+..+++.+++...+..+++++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  155 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC  155 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence            99999999996 78988887654     26799999999999642          1245778899999998884489999


Q ss_pred             eeccCCC-HHHHHHHHHHHHh
Q 029929          158 SAKEGFN-VEAAFECIAKNAL  177 (185)
Q Consensus       158 s~~~~~~-i~~~~~~i~~~~~  177 (185)
                      ||++|++ ++++|..+++.+.
T Consensus       156 SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         156 SAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             ccCcCCcCHHHHHHHHHHHHh
Confidence            9999995 9999999999765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5.3e-34  Score=191.11  Aligned_cols=163  Identities=37%  Similarity=0.687  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988777888877776666666777789999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++..+++...+ ++++++||++|.|+.++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999988765432    26799999999999764  3445666677777666 78999999999999999


Q ss_pred             HHHHHHHHhh
Q 029929          169 FECIAKNALK  178 (185)
Q Consensus       169 ~~~i~~~~~~  178 (185)
                      ++++.+.+..
T Consensus       155 ~~~l~~~~~~  164 (165)
T cd01865         155 FERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=4.5e-34  Score=191.81  Aligned_cols=166  Identities=34%  Similarity=0.641  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888899988888888888888899999999999988888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPS-DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      |++++++++.+..|+..+....... ...+.|+++|+||+|+...  .....++...++...+ ++++++||++|.|+++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  157 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE  157 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence            9999999999999999887765421 1236799999999999753  4456667777777666 8999999999999999


Q ss_pred             HHHHHHHHHh
Q 029929          168 AFECIAKNAL  177 (185)
Q Consensus       168 ~~~~i~~~~~  177 (185)
                      ++++|.+.+.
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.1e-34  Score=190.38  Aligned_cols=160  Identities=33%  Similarity=0.622  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|++|+|||||++++....+.+.+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999988888888888887778888888889999999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....    .+.|+++|+||.|+...  +.+..++...++...+ ++++++||++|.|++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            99999999999999988865532    26799999999999764  5556677888877666 89999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      |.+|+++
T Consensus       154 f~~l~~~  160 (161)
T cd04117         154 FTRLTEL  160 (161)
T ss_pred             HHHHHhh
Confidence            9999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=7e-34  Score=190.53  Aligned_cols=163  Identities=38%  Similarity=0.649  Sum_probs=141.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888877777888777777778888877899999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+....    ..+.|+++|+||+|+...  ++...++...++...+...++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYG----ASNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence            999999999999999999886542    237799999999999765  45566777788777775679999999999999


Q ss_pred             HHHHHHHHH
Q 029929          167 AAFECIAKN  175 (185)
Q Consensus       167 ~~~~~i~~~  175 (185)
                      ++++++.+.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=8.8e-34  Score=190.20  Aligned_cols=164  Identities=41%  Similarity=0.753  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999988877788888788777788888888999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+.....    .+.|+++|+||+|+...  .....++...++...+ ++++++||++|.|+.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  154 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ  154 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence            999999999999999998865532    26799999999998764  4455677777777665 8999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      ++.+|.+.+..
T Consensus       155 ~~~~i~~~~~~  165 (166)
T cd01869         155 AFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=9.7e-34  Score=197.19  Aligned_cols=167  Identities=35%  Similarity=0.539  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888899999888877777765 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      ||++++++++.+..|...+....... ..+.|+++|+||+|+.+.  +....+....++...+ ++++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            99999999999999999887765322 235689999999999754  5567777888887776 7899999999999999


Q ss_pred             HHHHHHHHHhhc
Q 029929          168 AFECIAKNALKN  179 (185)
Q Consensus       168 ~~~~i~~~~~~~  179 (185)
                      +|++|++.+...
T Consensus       157 lf~~l~~~l~~~  168 (215)
T cd04109         157 LFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=9.8e-34  Score=195.02  Aligned_cols=168  Identities=41%  Similarity=0.710  Sum_probs=145.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      +..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35699999999999999999999999888778888888887777777887889999999999999989999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....     ..|+++|+||+|+...  .....++...+....+ ++++++||++|.|+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi  155 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV  155 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence            99999999999999999988765432     5799999999999764  4455667777777666 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++++|.+.+.....
T Consensus       156 ~~lf~~l~~~~~~~~~  171 (199)
T cd04110         156 EEMFNCITELVLRAKK  171 (199)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.2e-33  Score=190.06  Aligned_cols=165  Identities=35%  Similarity=0.613  Sum_probs=141.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|.+|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988889999888887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  169 (185)
                      ++++++++.+..|+..+......   ...|+++|+||+|+..........++...+....+ .+++++||++|.|+++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence            99999999999999887654322   24689999999999654333344556667766666 789999999999999999


Q ss_pred             HHHHHHHhh
Q 029929          170 ECIAKNALK  178 (185)
Q Consensus       170 ~~i~~~~~~  178 (185)
                      +.|++.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=8.4e-34  Score=193.96  Aligned_cols=169  Identities=31%  Similarity=0.556  Sum_probs=142.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3459999999999999999999999888777777776555 455667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|...+.....   ..+.|+++|+||+|+.+.  +.+..++...+....+ ++++++||++|.|+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi  155 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNV  155 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCH
Confidence            99999999999999999988876533   237799999999998654  4455666667766665 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++.+|++.+.+..+
T Consensus       156 ~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        156 DEAFYELVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876643

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1e-33  Score=196.22  Aligned_cols=169  Identities=34%  Similarity=0.656  Sum_probs=145.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      .+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+......+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777888888877777766 4567899999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++++.+..|+..+......   ...|+++|+||+|+...  .....++...++...+ ++++++||++|.|+.
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~  155 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE  155 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence            99999999999999999988765433   25688999999999764  5566777788887777 899999999999999


Q ss_pred             HHHHHHHHHHhhcCCc
Q 029929          167 AAFECIAKNALKNEPQ  182 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~~  182 (185)
                      +++++|.+.+.++.++
T Consensus       156 e~f~~l~~~~~~~~~~  171 (211)
T cd04111         156 EAFELLTQEIYERIKR  171 (211)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999988876443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=9.6e-34  Score=192.23  Aligned_cols=165  Identities=25%  Similarity=0.465  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999988888999988887778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      |++++++++.+..|+..+.....    ...| ++|+||+|+....   ......++...++...+ ++++++||++|.|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v  154 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV  154 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999998866432    2456 6789999996421   11222456667777766 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      +++|+++.+.+..-
T Consensus       155 ~~lf~~l~~~l~~~  168 (182)
T cd04128         155 QKIFKIVLAKAFDL  168 (182)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7.3e-34  Score=191.87  Aligned_cols=162  Identities=25%  Similarity=0.471  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+. ....+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            68999999999999999999999988888888876654 34567788899999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+....          .+.+..+++.+++...+.+.++++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~  155 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence            999999999986 5877775542     267999999999986532          145667778888877766799999


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||++|.|++++|+.++.++
T Consensus       156 SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         156 SALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=8.7e-34  Score=189.62  Aligned_cols=161  Identities=36%  Similarity=0.632  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|||||||++++....+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 344556677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|...+.....   ..+.|+++|+||+|+.+.  +....++...+....+ .+++++||++|.|+.++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKD---TENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence            99999999999999888876532   237799999999999764  4455666667776666 89999999999999999


Q ss_pred             HHHHHHHH
Q 029929          169 FECIAKNA  176 (185)
Q Consensus       169 ~~~i~~~~  176 (185)
                      +++|.+.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.4e-33  Score=188.86  Aligned_cols=163  Identities=31%  Similarity=0.575  Sum_probs=137.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ++||+++|.+|||||||++++....+...+.++.+..+ ...+.+.+..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998877766677776544 35567777788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++.+++.+..|+..+.....   ..+.|+++|+||+|+.+.  .....++...++...+ ++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence            999999999999989888875432   237899999999999764  4455666667776666 8999999999999999


Q ss_pred             HHHHHHHHHh
Q 029929          168 AFECIAKNAL  177 (185)
Q Consensus       168 ~~~~i~~~~~  177 (185)
                      ++.+|.+.+.
T Consensus       154 ~~~~l~~~l~  163 (164)
T cd04175         154 IFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.8e-33  Score=196.12  Aligned_cols=167  Identities=21%  Similarity=0.415  Sum_probs=144.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|..|+|||||+.++....+...+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            4589999999999999999999999998888899876664 457788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEE
Q 029929           87 VYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      |||++++++|+.+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..+++.+++...+..+|+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~  165 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL  165 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence            9999999999985 789888876532     5799999999998642          12567888999999988833699


Q ss_pred             EeeeccCC-CHHHHHHHHHHHHhhc
Q 029929          156 ETSAKEGF-NVEAAFECIAKNALKN  179 (185)
Q Consensus       156 ~~s~~~~~-~i~~~~~~i~~~~~~~  179 (185)
                      +|||++|. |++++|..++..+.++
T Consensus       166 EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         166 ECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EccCCcCCcCHHHHHHHHHHHHHHh
Confidence            99999998 8999999999988765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.9e-33  Score=192.56  Aligned_cols=166  Identities=43%  Similarity=0.721  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      +||+++|++|+|||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||+..+......+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888753 5667777777776778888889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+......    +.|+++|+||+|+...  +....++...+....+ .+++++||++|.|+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~  153 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL  153 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence            9999999999999999888765432    6799999999999754  4455667777777666 7999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 029929          168 AFECIAKNALKNEP  181 (185)
Q Consensus       168 ~~~~i~~~~~~~~~  181 (185)
                      ++.+|.+.+.....
T Consensus       154 l~~~l~~~~~~~~~  167 (191)
T cd04112         154 AFTAVAKELKHRKY  167 (191)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.4e-33  Score=196.58  Aligned_cols=164  Identities=30%  Similarity=0.591  Sum_probs=141.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|.+|+|||||++++....+...+.++.+.++....+...+..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56699999999999999999999999888888899988888777777777899999999999999999989999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++++++++.+..|+..+....     .+.|+++|+||+|+...   ....+.+ .+....+ ++++++||++|.|+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~---~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i  160 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR---QVKAKQV-TFHRKKN-LQYYEISAKSNYNF  160 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhc---cCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence            9999999999999999999887653     26899999999999642   2233344 4445444 88999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      +++|.+|++.+.+.
T Consensus       161 ~~~f~~l~~~~~~~  174 (219)
T PLN03071        161 EKPFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999998755

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.2e-33  Score=188.46  Aligned_cols=170  Identities=81%  Similarity=1.265  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777788877777777888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++....|...+...+......++|+++|+||+|+...  .....++...+....+..+++++|+++|.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            99999999998888888777766555557899999999999853  3445666667766666579999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 029929          169 FECIAKNALKNE  180 (185)
Q Consensus       169 ~~~i~~~~~~~~  180 (185)
                      +++|.+.+.++.
T Consensus       159 ~~~i~~~~~~~~  170 (172)
T cd01862         159 FETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.4e-33  Score=187.92  Aligned_cols=162  Identities=39%  Similarity=0.741  Sum_probs=142.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+......+++.++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999988878888888888888888888888999999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  155 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVEE  155 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            9999999999999999988765432    5799999999999764  4556667777776654 8899999999999999


Q ss_pred             HHHHHHHHH
Q 029929          168 AFECIAKNA  176 (185)
Q Consensus       168 ~~~~i~~~~  176 (185)
                      ++++|...+
T Consensus       156 l~~~l~~~i  164 (165)
T cd01868         156 AFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.5e-33  Score=191.53  Aligned_cols=166  Identities=47%  Similarity=0.758  Sum_probs=144.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999888777888888887777888888889999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....    .+.|+++++||+|+.+.  .....+....++...+ ++++++||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~----~~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~  153 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYAR----ENVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA  153 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            99999999999999888876532    25799999999999754  4455667777777665 79999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 029929          169 FECIAKNALKNEP  181 (185)
Q Consensus       169 ~~~i~~~~~~~~~  181 (185)
                      +.+|.+.+..+..
T Consensus       154 f~~l~~~~~~~~~  166 (188)
T cd04125         154 FILLVKLIIKRLE  166 (188)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=180.80  Aligned_cols=173  Identities=38%  Similarity=0.638  Sum_probs=159.3

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |++.=...+|++++|+.|+|||.|+.+|...++.+....+++.++....+.+.++.+++++|||+|++.|++....|++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45555678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +-++++|||++++++|+.+..|+....-+.+.    ++-+++++||.||.+.  +++...+...|++... ..+.++|++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~  154 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL  154 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence            99999999999999999999999998766554    7788999999999877  8899999999999887 799999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|+++++.|-...+.++.+.
T Consensus       155 TGeNVEEaFl~c~~tIl~kI  174 (214)
T KOG0086|consen  155 TGENVEEAFLKCARTILNKI  174 (214)
T ss_pred             ccccHHHHHHHHHHHHHHHH
Confidence            99999999998888877654

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.5e-33  Score=192.91  Aligned_cols=169  Identities=30%  Similarity=0.497  Sum_probs=141.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888777777776544 3445567777889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  169 (185)
                      ++++++++.+..|+..+...... ...+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence            99999999999998888765432 1246799999999999754  4455666777777666 799999999999999999


Q ss_pred             HHHHHHHhhcCCcc
Q 029929          170 ECIAKNALKNEPQE  183 (185)
Q Consensus       170 ~~i~~~~~~~~~~~  183 (185)
                      +++.+.+..++.+.
T Consensus       156 ~~l~~~l~~~~~~~  169 (190)
T cd04144         156 YTLVRALRQQRQGG  169 (190)
T ss_pred             HHHHHHHHHhhccc
Confidence            99999988776554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-34  Score=188.41  Aligned_cols=167  Identities=38%  Similarity=0.689  Sum_probs=157.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.|||+++|.+++|||-|+.++..+.+.....+|++.++....+.+++..++.++|||+||++++.....|++.+.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++...+|+.+.+|+.+++.+...    ++++++|+||+||.+.  +.+..++.+.++...+ ..|+++||.++.++
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~tNV  164 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDATNV  164 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEecccccccH
Confidence            999999999999999999999877654    8899999999999885  8889999999999887 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      +++|..++..+.+.
T Consensus       165 e~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  165 EKAFERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888877654

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=179.72  Aligned_cols=165  Identities=45%  Similarity=0.768  Sum_probs=154.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++.+++|.+|+|||+|+.+|....+..++..+++.++....+.+++..+++.+||++|++.|+.+...+++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||+++.+||.+..+|++++..++.     .+|-++|+||+|.++.  +.+..++++.++...+ +.+|++|+++..+++
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE  158 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENVE  158 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccch
Confidence            9999999999999999999987665     6789999999999876  8888999999999988 999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ..|.-|.+.+..-
T Consensus       159 ~mF~cit~qvl~~  171 (198)
T KOG0079|consen  159 AMFHCITKQVLQA  171 (198)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877643

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.2e-33  Score=186.71  Aligned_cols=159  Identities=37%  Similarity=0.743  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC--CcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +||+++|.+|+|||||++++++..+...+.++.+.++....+.+.  +..+.+++|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999998887788888888766667666  677899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+....     .+.|+++|+||+|+...  ..+..++...++...+ ++++++|++++.|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  152 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT  152 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            999999999999999988876543     26799999999999764  3455667777777766 799999999999999


Q ss_pred             HHHHHHHHH
Q 029929          167 AAFECIAKN  175 (185)
Q Consensus       167 ~~~~~i~~~  175 (185)
                      +++++|...
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5.4e-33  Score=186.24  Aligned_cols=161  Identities=32%  Similarity=0.669  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++....+...+.++.+.+.....+...+..+.+.+|||+|++.+......++..+|++|+|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777888887777777777777889999999999988888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....     ++|+++|+||+|+...   .... ....+.... .++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~~-~~~~~~~~~-~~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVKA-KQITFHRKK-NLQYYEISAKSNYNFEKP  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCCH-HHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence            99999999999999998876643     6799999999999732   2222 233444443 488999999999999999


Q ss_pred             HHHHHHHHhhc
Q 029929          169 FECIAKNALKN  179 (185)
Q Consensus       169 ~~~i~~~~~~~  179 (185)
                      +++|++.+...
T Consensus       151 f~~l~~~~~~~  161 (166)
T cd00877         151 FLWLARKLLGN  161 (166)
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.6e-33  Score=185.85  Aligned_cols=164  Identities=49%  Similarity=0.844  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777888888887788888887789999999999998888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+..+..    ++.|+++++||+|+...  .+...+....+....+ ++++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            99999999999889888876643    27899999999998764  4455666777777665 88999999999999999


Q ss_pred             HHHHHHHHhhc
Q 029929          169 FECIAKNALKN  179 (185)
Q Consensus       169 ~~~i~~~~~~~  179 (185)
                      +++|.+.+.++
T Consensus       154 ~~~i~~~~~~~  164 (164)
T smart00175      154 FEELAREILKR  164 (164)
T ss_pred             HHHHHHHHhhC
Confidence            99999988653

Rab GTPases are implicated in vesicle trafficking.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=7.2e-33  Score=186.09  Aligned_cols=165  Identities=38%  Similarity=0.683  Sum_probs=143.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+....+.+||+||++.+......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999998887777888888877888888878899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+....    .++.|+++|+||.|+...  .....++...++...+ ++++++||+++.|+.
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~  155 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHS----NSNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE  155 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            999999999999999998886653    237899999999999754  4456677777777665 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      +++.++.+.+.+
T Consensus       156 ~~~~~~~~~~~~  167 (168)
T cd01866         156 EAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4.8e-33  Score=186.27  Aligned_cols=163  Identities=35%  Similarity=0.625  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            589999999999999999999988877766766533 3455667777889999999999999998899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|...+.+....   .+.|+++|+||+|+...  +....+....++...+ .+++++||++|.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~---~~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDR---DDVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence            999999999999888887665432   26799999999999764  4456667777777666 89999999999999999


Q ss_pred             HHHHHHHHhh
Q 029929          169 FECIAKNALK  178 (185)
Q Consensus       169 ~~~i~~~~~~  178 (185)
                      +++|++.+..
T Consensus       154 ~~~l~~~~~~  163 (164)
T smart00173      154 FYDLVREIRK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=7.2e-33  Score=184.86  Aligned_cols=161  Identities=32%  Similarity=0.604  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||++++....+.+...++.+.+.......+++..+.+.+|||+|++.+...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777766666666777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++.+++.+..|+..+....     ++.|+++|+||+|+...     ..++...++...+ ++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-----~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-----PEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL  149 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEECccCchh-----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            9999999999999998886543     26799999999998532     1233444555554 79999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 029929          169 FECIAKNALKNE  180 (185)
Q Consensus       169 ~~~i~~~~~~~~  180 (185)
                      ++.+.+.+..++
T Consensus       150 ~~~l~~~~~~~~  161 (161)
T cd04124         150 FQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=4.6e-33  Score=185.83  Aligned_cols=160  Identities=40%  Similarity=0.666  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888887777888888889999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |+++++++..+..|+..+.....    ++.|+++++||+|+...  .....++...++...+ ++++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999887765432    37899999999999764  5566777788887777 89999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      ++++++.
T Consensus       154 ~~~~~~~  160 (161)
T cd04113         154 FLKCARS  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.4e-33  Score=193.00  Aligned_cols=167  Identities=38%  Similarity=0.690  Sum_probs=146.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++|
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....+....+....+ ++++++||++|.|+
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v  162 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV  162 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988876543    36899999999999754  4556667777776665 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|+..+...
T Consensus       163 ~~lf~~l~~~i~~~  176 (216)
T PLN03110        163 EKAFQTILLEIYHI  176 (216)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988663

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6e-33  Score=189.70  Aligned_cols=165  Identities=29%  Similarity=0.483  Sum_probs=137.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|.+|+|||||++++....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7999999999999999999999988777788766553 445567777899999999999998888889999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEEee
Q 029929           90 VNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ++++++++.+. .|+..+....     ++.|+++|+||+|+.....          .....++...++...+.++++++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  155 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS  155 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999886 5877776543     2679999999999975421          123455666777766667899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcC
Q 029929          159 AKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |++|.|++++|.+|.+.+....
T Consensus       156 Ak~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         156 AKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCcCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999988654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=5.8e-33  Score=187.32  Aligned_cols=161  Identities=25%  Similarity=0.496  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999999999999888877778775433 445567788889999999999999988889999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+.+..          .+.+..++...++...+..++++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  155 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  155 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999985 5777665432     268999999999996431          134677888888888876699999


Q ss_pred             eeccCCCHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~  175 (185)
                      ||++|.|++++|+.+++.
T Consensus       156 Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         156 SALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccccCCHHHHHHHHHHh
Confidence            999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.2e-32  Score=183.82  Aligned_cols=160  Identities=33%  Similarity=0.604  Sum_probs=135.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999888777777776444 455567777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++.+++.+..|+..+.+....   .+.|+++|+||+|+..   +....++...+....+ ++++++||++|.|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  153 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEEA  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHHH
Confidence            999999999998888888765432   3679999999999976   3455666777766665 79999999999999999


Q ss_pred             HHHHHHHH
Q 029929          169 FECIAKNA  176 (185)
Q Consensus       169 ~~~i~~~~  176 (185)
                      +++|++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.8e-32  Score=184.52  Aligned_cols=163  Identities=39%  Similarity=0.677  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-ccccchhccCcEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL   86 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~   86 (185)
                      .++|+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999988887778888888877888888888999999999998876 467788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc---CC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---GF  163 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~  163 (185)
                      |+|+++++++..+..|+..+......   .++|+++|+||+|+...  +....++...++.... ++++++||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~  155 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND  155 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence            99999999999999999888765433   36899999999999764  4556667777777665 8999999999   88


Q ss_pred             CHHHHHHHHHHHH
Q 029929          164 NVEAAFECIAKNA  176 (185)
Q Consensus       164 ~i~~~~~~i~~~~  176 (185)
                      +++++|..+++.+
T Consensus       156 ~i~~~f~~l~~~~  168 (170)
T cd04115         156 HVEAIFMTLAHKL  168 (170)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.3e-32  Score=190.88  Aligned_cols=166  Identities=20%  Similarity=0.431  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+|+|..|+|||||+.++....++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            69999999999999999999999998888899876664 56678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+....          ...+..++...++...+.++|++|
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~  155 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC  155 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence            999999999984 5665554332     378999999999996531          123567788888888885699999


Q ss_pred             eeccCCC-HHHHHHHHHHHHhhcC
Q 029929          158 SAKEGFN-VEAAFECIAKNALKNE  180 (185)
Q Consensus       158 s~~~~~~-i~~~~~~i~~~~~~~~  180 (185)
                      ||+++++ ++++|...+.++..+.
T Consensus       156 SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         156 SSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHhcc
Confidence            9999985 9999999999887654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=9.4e-33  Score=184.69  Aligned_cols=161  Identities=32%  Similarity=0.568  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|+|||||++++....+.+.+.++.+ +.....+.+++....+.+|||||++.+..++..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988777667664 444566777777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|...+......   .++|+++|+||+|+...  ......+...+....+ ++++++||++|.|+.++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNEL  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHH
Confidence            999999999999998888765322   37899999999998753  3444555666666665 79999999999999999


Q ss_pred             HHHHHHHH
Q 029929          169 FECIAKNA  176 (185)
Q Consensus       169 ~~~i~~~~  176 (185)
                      +.++++.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd04176         155 FAEIVRQM  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=8.8e-33  Score=184.62  Aligned_cols=161  Identities=45%  Similarity=0.798  Sum_probs=149.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|+.|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......+++.+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998999999889999999999999999999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  169 (185)
                      .+++++++.+..|+..+.....    .+.|+++++||.|+...  +++..++++.++...+ .+++++|++++.|+.++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred             cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence            9999999999999999988766    25799999999999863  6778889999999888 999999999999999999


Q ss_pred             HHHHHHHh
Q 029929          170 ECIAKNAL  177 (185)
Q Consensus       170 ~~i~~~~~  177 (185)
                      ..+++.+.
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=1.7e-32  Score=188.19  Aligned_cols=170  Identities=25%  Similarity=0.402  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhcc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG   80 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~   80 (185)
                      ++|+|+|.+|+|||||++++.+..+...+.|+.+.+.....+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998877888887666666667788888999999999654321        12334688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++|+|||++++++++.+..|+..+...... ...++|+++|+||+|+...  +....+++..++.....++++++||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence            99999999999999999999998888765421 2337899999999999764  44455566666544445899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCC
Q 029929          161 EGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +|.|++++|+.+++.+..+.+
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         158 YNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCC
Confidence            999999999999998876544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.9e-32  Score=183.58  Aligned_cols=162  Identities=28%  Similarity=0.444  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|+|||||++++.+..+...+.++.+..+ ..........+.+.+|||||++.+..+...+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777765444 444556667789999999999998888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+...... ..++.|+++|+||+|+...  ++...++...++...+ ++++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence            999999999998888877654322 2247899999999999763  4455666666666655 78999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      +++|+..
T Consensus       157 f~~l~~~  163 (165)
T cd04140         157 FQELLNL  163 (165)
T ss_pred             HHHHHhc
Confidence            9999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2e-32  Score=182.75  Aligned_cols=160  Identities=41%  Similarity=0.685  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888887789999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....    .+.|+++++||+|+...  .....++...+....+ ++++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL  153 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence            99999999999888887754322    26799999999999643  4556666777766665 89999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      +++|.+.
T Consensus       154 ~~~i~~~  160 (161)
T cd01861         154 FRKIASA  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3.1e-32  Score=182.30  Aligned_cols=162  Identities=31%  Similarity=0.592  Sum_probs=136.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||+.++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887766666665443 44456777778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+......   .+.|+++++||+|+...  .....++...++...+ ++++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  154 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence            9999999999999898887765332   36799999999999764  3455666777777766 7999999999999999


Q ss_pred             HHHHHHHHH
Q 029929          168 AFECIAKNA  176 (185)
Q Consensus       168 ~~~~i~~~~  176 (185)
                      ++++|++.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.2e-32  Score=188.79  Aligned_cols=167  Identities=37%  Similarity=0.664  Sum_probs=145.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+|||+|+..+...+..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999998887778888888877788888888899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+.....    .+.|+++++||+|+...  +....++...++...+ ++++++||+++.|++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE  157 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999888887765432    36799999999999764  4566777888887776 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      ++|.++++.+.++.
T Consensus       158 e~f~~l~~~~~~~~  171 (210)
T PLN03108        158 EAFIKTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887653

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.3e-32  Score=181.45  Aligned_cols=162  Identities=43%  Similarity=0.747  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|+|||||++++.+..+.....++.+..+....+.+++....+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998877778888777778888888888999999999998888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+.....    +..|+++++||+|+...  .....++...+....+ .+++++||++|.|+.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE  153 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999888876542    37899999999998753  4455666777777666 8899999999999999


Q ss_pred             HHHHHHHHH
Q 029929          168 AFECIAKNA  176 (185)
Q Consensus       168 ~~~~i~~~~  176 (185)
                      ++++|.+.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd01860         154 LFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHh
Confidence            999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=5.4e-32  Score=185.73  Aligned_cols=166  Identities=34%  Similarity=0.611  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      +||+++|.+|+|||||++++.+..+.. .+.++.+..+....+.+++..+.+.+||++|++.+......+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999988764 5677887777777788888889999999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--ceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ||++++++++.+..|+..+....     .+.|+++|+||+|+....  .+....+++..++...+ ++++++||+++.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  154 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV  154 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            99999999999888888775432     267999999999986532  23444566777776665 78999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      ++++++|.+.+..+.
T Consensus       155 ~~l~~~i~~~~~~~~  169 (193)
T cd04118         155 DELFQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=3.8e-32  Score=191.84  Aligned_cols=166  Identities=30%  Similarity=0.497  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|+|||||++++....+...+.++.+ +.....+.+++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999888877777775 555667778888899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASP-----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      |++++++|+.+..|+..+......     ....+.|+++|+||+|+...  +++..+++.+++.....+.++++||++|.
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            999999999999998888754221     12347899999999999753  44566677776654444789999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 029929          164 NVEAAFECIAKNAL  177 (185)
Q Consensus       164 ~i~~~~~~i~~~~~  177 (185)
                      |+++++++|.+...
T Consensus       158 gI~elf~~L~~~~~  171 (247)
T cd04143         158 NLDEMFRALFSLAK  171 (247)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=3e-32  Score=183.11  Aligned_cols=165  Identities=25%  Similarity=0.360  Sum_probs=136.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ++.+||+++|.+|+|||||++++.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+......+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999887 77888888777767777788778899999999999888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++++++.+..|+..+..      ..++|+++|+||+|+.+.  ......+...++...+...++++||+++.|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            999999999999988777765421      126799999999999654  222233445555555533579999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029929          165 VEAAFECIAKNALK  178 (185)
Q Consensus       165 i~~~~~~i~~~~~~  178 (185)
                      ++++++.|.+.+..
T Consensus       154 v~~lf~~l~~~~~~  167 (169)
T cd01892         154 SNELFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4.2e-32  Score=185.42  Aligned_cols=166  Identities=33%  Similarity=0.561  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ++|+++|.+|+|||||++++.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999999999999999887777777666543 34444 6678999999999999988888899999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--ceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      +|++++++++.+. .|+..+....     ++.|+++|+||+|+....  .+....++..+++...+..+++++||++|.|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            9999999999985 4776665432     267999999999996532  2345677788888877744899999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +.+++..+.+.+....
T Consensus       155 v~~~f~~l~~~~~~~~  170 (187)
T cd04132         155 VEEVFDTAIEEALKKE  170 (187)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999988764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.8e-32  Score=180.45  Aligned_cols=157  Identities=26%  Similarity=0.479  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|+.|+|||||+.++....+.....++ ...+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988776654443 3333 45677788888899999999864     24567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++|+.+..|+..+.....   ..+.|+++|+||+|+.....+.+..++..+++...+.++|++|||++|.|++++
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRN---ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            99999999999999998876542   236799999999998654446777788888887665589999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      |..+++.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=4.8e-32  Score=187.99  Aligned_cols=161  Identities=39%  Similarity=0.651  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||++++....+.. ..++.+.++.....    ..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998764 46666655543332    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------CceeecHHHHHHHHHhcCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NSRVVSEKKAKAWCASKGN  151 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~  151 (185)
                      |++++++++.+..|+..+....    ..+.|+++|+||+|+...                 ..+.+..++...++...+.
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~  151 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTA----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK  151 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence            9999999999988887776532    236799999999999751                 1367778889888887652


Q ss_pred             -------------CcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          152 -------------IPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       152 -------------~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                                   ++|+++||++|.|++++|..+++.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                         579999999999999999999988764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=172.07  Aligned_cols=168  Identities=36%  Similarity=0.670  Sum_probs=154.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+|++++|...+|||||+.+..+..+.+..-++.+.++..+.+......+++++|||.|++.++.+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            35689999999999999999999999999999999999999888877778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ++||++|.+++..++.|...+.-....    +.|+|+|+||||+..+  +.+.-+..+.++..++ ..++++||+.+.++
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV  171 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV  171 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence            999999999999999999988765443    8899999999999876  8899999999999998 89999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      +++|+.++..+-.+.
T Consensus       172 k~~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  172 KQVFERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999988876543

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=8.6e-32  Score=179.67  Aligned_cols=160  Identities=38%  Similarity=0.676  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887767788887777777777777889999999999988888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |.+++++++.+..|+..+..+...   .+.|+++|+||+|+..   .....++...+....+ ++++++|+++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  153 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA  153 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence            999999999998888888766442   3779999999999984   3345566777777665 89999999999999999


Q ss_pred             HHHHHHH
Q 029929          169 FECIAKN  175 (185)
Q Consensus       169 ~~~i~~~  175 (185)
                      ++++.+.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-33  Score=174.17  Aligned_cols=166  Identities=37%  Similarity=0.633  Sum_probs=152.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..|+|+++|.+|+|||.|+++|+..-+++....+++.++-.+.+.+.+..+++++|||+|+++|++..+.|++.+|++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++..++|+-+..|+.++..+...    ++-.|+|+||+|+.+.  +++..+..++|..... .-|.++||++.++++
T Consensus        86 vydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~nve  158 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEADNVE  158 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchhhHH
Confidence            99999999999999999999888765    5567899999999876  7788888888887754 778999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      .+|..+.-.+...
T Consensus       159 ~lf~~~a~rli~~  171 (213)
T KOG0095|consen  159 KLFLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877654

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.1e-31  Score=179.59  Aligned_cols=160  Identities=32%  Similarity=0.600  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      +||+++|.+|||||||++++...  .+...+.++.+.++....+.+. +....+.+|||||+..+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667778888877766666665 46789999999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+....     .+.|+++|+||+|+.+.  .+........+....+ ++++++||+++.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  152 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY  152 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence            9999999999999999988876543     26799999999999754  3344445555555555 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 029929          166 EAAFECIAKNA  176 (185)
Q Consensus       166 ~~~~~~i~~~~  176 (185)
                      ++++++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (164)
T cd04101         153 EEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=7.1e-32  Score=184.93  Aligned_cols=156  Identities=30%  Similarity=0.631  Sum_probs=135.2

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh
Q 029929           14 LGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM   93 (185)
Q Consensus        14 iG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (185)
                      +|..|||||||+++++...+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            59999999999999998888877888988888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHH
Q 029929           94 KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA  173 (185)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  173 (185)
                      .+++.+..|+..+.+..     .++|+++|+||+|+...   ....+. ..++...+ +++++|||++|.|+.++|.+|+
T Consensus        81 ~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~---~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDR---KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999887653     27899999999998642   233333 34555554 8999999999999999999999


Q ss_pred             HHHhhc
Q 029929          174 KNALKN  179 (185)
Q Consensus       174 ~~~~~~  179 (185)
                      +.+...
T Consensus       151 ~~i~~~  156 (200)
T smart00176      151 RKLIGD  156 (200)
T ss_pred             HHHHhc
Confidence            988765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.4e-31  Score=179.78  Aligned_cols=163  Identities=33%  Similarity=0.609  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|.+|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.++++++|+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7899999999999999999999888777777776443 455667777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |.+++++++.+..|...+.....   ..+.|+++++||.|+...  +....++...+....+..+++++||+++.|+.++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence            99999999999988888876432   237899999999999754  4455666666666665578999999999999999


Q ss_pred             HHHHHHHHh
Q 029929          169 FECIAKNAL  177 (185)
Q Consensus       169 ~~~i~~~~~  177 (185)
                      ++++...+.
T Consensus       156 f~~i~~~~~  164 (168)
T cd04177         156 FIDLVRQII  164 (168)
T ss_pred             HHHHHHHHh
Confidence            999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=185.30  Aligned_cols=168  Identities=36%  Similarity=0.626  Sum_probs=138.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|.+|+|||||++++....+. ...++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988764 55677777777777778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           86 LVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      +|+|.+++++++.+.. |...+.....   ..+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~~~  164 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTREN  164 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            9999999999999876 4444432222   225689999999999764  3455666666666665 7899999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +++++++|.+.+....
T Consensus       165 v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        165 VEQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999887654

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2e-31  Score=177.94  Aligned_cols=161  Identities=42%  Similarity=0.706  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++++..+.....++.+.......+...+....+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887666667766666666777777788999999999988888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|...+......    +.|+++++||+|+...  .....+...++....+ .+++++|+++++|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~  153 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            999999999998888887665432    6799999999999854  3445566666666555 78999999999999999


Q ss_pred             HHHHHHHH
Q 029929          169 FECIAKNA  176 (185)
Q Consensus       169 ~~~i~~~~  176 (185)
                      +++|.+.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.1e-31  Score=181.31  Aligned_cols=162  Identities=28%  Similarity=0.532  Sum_probs=135.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEEC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (185)
                      |+++|.+|+|||||++++....+...+.++....+ ...+.+++..+.+.+|||||++.+..+...+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777765444 34566778888999999999999988888899999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           91 NVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      +++++++.+. .|+..+....     ++.|+++|+||+|+....          ...+..++...++...+..+++++||
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  154 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-----PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA  154 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999985 5877776543     267999999999997532          12356677778888877558999999


Q ss_pred             ccCCCHHHHHHHHHHHHhh
Q 029929          160 KEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~  178 (185)
                      ++|.|++++++.+++.+.+
T Consensus       155 ~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      155 LTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCCHHHHHHHHHHHhcC
Confidence            9999999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=2e-31  Score=179.85  Aligned_cols=160  Identities=30%  Similarity=0.490  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||+.++.+..+...+.++. .+.....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877776665 3444556777777889999999999999988888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+. .|+..+....     ++.|+++++||+|+....          .+.+..++...++...+..+++++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  154 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC  154 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence            999999999874 5777765432     257999999999996532          356677788888887775599999


Q ss_pred             eeccCCCHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAK  174 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~  174 (185)
                      ||++|.|++++++.++.
T Consensus       155 Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         155 SALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=2.6e-31  Score=185.43  Aligned_cols=164  Identities=27%  Similarity=0.388  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc-cCcEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL   86 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~   86 (185)
                      +||+++|.+|+|||||++++....+. ..+.++.+.+.....+.+++....+.+||++|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999877775 55556655466667777788888999999999872  23334556 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++.+++.+..|+..+.....   ..++|+++|+||+|+...  +.+..++...++...+ ++++++||+++.|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~  152 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD  152 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence            9999999999999888888765432   237899999999999765  4566666777777666 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      +++++|++.+...+
T Consensus       153 ~l~~~l~~~~~~~~  166 (221)
T cd04148         153 ELLEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=5.3e-31  Score=177.16  Aligned_cols=164  Identities=38%  Similarity=0.649  Sum_probs=138.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|||||||++++....+.+...++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34589999999999999999999988877777788877777777888888889999999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  ++...+....+..... .+++++|+++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  157 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNV  157 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence            99999999999988888887755432    25799999999998754  4445555566655555 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 029929          166 EAAFECIAKNA  176 (185)
Q Consensus       166 ~~~~~~i~~~~  176 (185)
                      ++++++|.+.+
T Consensus       158 ~~l~~~i~~~~  168 (169)
T cd04114         158 EKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9.8e-33  Score=174.58  Aligned_cols=169  Identities=37%  Similarity=0.670  Sum_probs=155.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...|+++++|...+|||||+-+++.++|......+....+..+.+.+++....+.+|||+|++.|..+-..|++.++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45679999999999999999999999999988888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|||+++.++|+....|..++..+.-.    .+.++||+||+||..+  +.+..++...++...+ +.++++||+.+.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G  162 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG  162 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence            9999999999999999999999877644    5678999999999876  8899999999999988 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +.++|+.|...+++..
T Consensus       163 i~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=4.5e-31  Score=178.31  Aligned_cols=162  Identities=26%  Similarity=0.449  Sum_probs=134.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++....+...+.++.... ....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999998877666666433 3445667788888999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |.+++++++.+. .|...+...     .++.|+++|+||+|+.+..          .+....++...++...+..+++++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC  154 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999885 566666533     2378999999999986532          124556778888888875689999


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||++|.|++++|+.+++.+
T Consensus       155 Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         155 SALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.9e-32  Score=172.23  Aligned_cols=172  Identities=36%  Similarity=0.692  Sum_probs=152.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      .+.++++|+|..-+|||+|++.++..++.....||.+.++....+.. ++..+++++|||+|++.|++....|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            45799999999999999999999999999999999999887776655 44568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|||++|.++|+.+..|..+...+..  .+.++-+.+|++|+||...  +++..++.++++...+ ..|+++|+++|.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g~N  160 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNGCN  160 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCCCc
Confidence            999999999999999999998776655  2334446789999999966  9999999999999888 9999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      +++.+..|.+.+...-++
T Consensus       161 VeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  161 VEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999988765443

>cd00154 Rab Rab family

Probab=100.00  E-value=9e-31  Score=173.92  Aligned_cols=158  Identities=47%  Similarity=0.858  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988887888888888888888888889999999999998888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++++++.+..|+..+.....    ...|+++++||+|+...  .....++...+..... .+++++|++++.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence            99999999999889888876643    26799999999999733  4456677777777654 89999999999999999


Q ss_pred             HHHHH
Q 029929          169 FECIA  173 (185)
Q Consensus       169 ~~~i~  173 (185)
                      +++|.
T Consensus       154 ~~~i~  158 (159)
T cd00154         154 FQSLA  158 (159)
T ss_pred             HHHHh
Confidence            99986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=1.7e-30  Score=173.75  Aligned_cols=163  Identities=34%  Similarity=0.557  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|+|||||+++++...+.....++.... .......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999888776666665433 3455667778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |++++.+++.+..|+..+.....   ..+.|+++|+||+|+...  ..........+....+ .+++++||+++.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence            99999999999888888877644   237899999999999763  3345555666666665 79999999999999999


Q ss_pred             HHHHHHHHhh
Q 029929          169 FECIAKNALK  178 (185)
Q Consensus       169 ~~~i~~~~~~  178 (185)
                      ++++.+.+..
T Consensus       154 ~~~l~~~~~~  163 (164)
T cd04139         154 FYDLVREIRQ  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=5.8e-31  Score=176.35  Aligned_cols=162  Identities=28%  Similarity=0.479  Sum_probs=131.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~   88 (185)
                      +|+++|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++|+|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877666666654333 45566777888999999999885 3445667889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC-CHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEA  167 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~  167 (185)
                      |++++++++.+..|+..+.....  ...+.|+++|+||+|+...  +....++...++...+ ++++++||+++. |+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence            99999999999888887766432  1236799999999998654  4456677777777776 899999999995 9999


Q ss_pred             HHHHHHHHHh
Q 029929          168 AFECIAKNAL  177 (185)
Q Consensus       168 ~~~~i~~~~~  177 (185)
                      +|.++++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=9.6e-31  Score=178.97  Aligned_cols=160  Identities=25%  Similarity=0.423  Sum_probs=126.3

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCccCccee-eeEEEE--------EEECCcEEEEEEecCCChhhhcc
Q 029929            8 LLKVIILGDSGVGKTSLMN-QYVNRK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS   72 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~   72 (185)
                      .+||+++|..|+|||||+. ++.+..     +...+.||.+. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            3799999999999999995 555443     34556677642 222211        24677889999999999875  2


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------Cc
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NS  134 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----------------~~  134 (185)
                      ....+++.+|++|+|||++++++++.+. .|...+....     ++.|+++|+||+|+...                 ..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~  154 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA  154 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence            4556889999999999999999999996 5888776543     26799999999999642                 13


Q ss_pred             eeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          135 RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +.+..+++++++...+ ++|++|||++|.|++++|+.++++
T Consensus       155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            6778889999999887 799999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=7.7e-31  Score=178.42  Aligned_cols=169  Identities=21%  Similarity=0.283  Sum_probs=129.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      .++|+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998776543 566665554444443 3356889999999999888888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh--c---CCCcEEEeeecc
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--K---GNIPYFETSAKE  161 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~s~~~  161 (185)
                      |+|++++++++.+..++..+......   .+.|+++|+||+|+...    ...+++..+...  .   ..++++++||++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  154 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII  154 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence            99999998888887777766654322   26799999999998643    223334433321  1   124689999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCCccc
Q 029929          162 GFNVEAAFECIAKNALKNEPQEE  184 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~~~~~  184 (185)
                      |.|+++++++|.+.+.+.+++.+
T Consensus       155 ~~gi~~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         155 GEGLQEGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999987766543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.98  E-value=2.3e-30  Score=175.01  Aligned_cols=162  Identities=27%  Similarity=0.524  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      .||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++..+|++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777776544 345667777889999999999988888878889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEEe
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      |++++++++.+. .|...+....     .+.|+++|+||+|+.....          ......+.++++...+..++++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~  155 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            999999998885 4666665432     2679999999999865321          23345566777777665689999


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||++|.|+++++++|.+++
T Consensus       156 Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         156 SAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccccCcCHHHHHHHHHHHh
Confidence            9999999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=4.8e-30  Score=176.60  Aligned_cols=166  Identities=31%  Similarity=0.445  Sum_probs=132.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|.+|+|||||++++....+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888766666654 3445567777777899999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  169 (185)
                      ++++++++.+..|+..+......   .++|+++|+||+|+... ......+...+........+++++||++|.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEE-ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEccccccc-cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            99999999999888888765443   26899999999999753 133334444443332223789999999999999999


Q ss_pred             HHHHHHHhhcC
Q 029929          170 ECIAKNALKNE  180 (185)
Q Consensus       170 ~~i~~~~~~~~  180 (185)
                      ++|++.+....
T Consensus       156 ~~l~~~~~~~~  166 (198)
T cd04147         156 KELLRQANLPY  166 (198)
T ss_pred             HHHHHHhhccc
Confidence            99999876443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00876 Ras Ras family

Probab=99.97  E-value=6.8e-30  Score=170.15  Aligned_cols=159  Identities=36%  Similarity=0.655  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|++|||||||++++++..+.....++.. +.....+.+.+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5556666677777899999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  169 (185)
                      .+++++++.+..|+..+......   ...|+++++||+|+...  .....+.+..+....+ .+++++|++++.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF  153 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence            99999999998888887765442   36799999999999864  4556677777777666 899999999999999999


Q ss_pred             HHHHHH
Q 029929          170 ECIAKN  175 (185)
Q Consensus       170 ~~i~~~  175 (185)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.5e-30  Score=173.90  Aligned_cols=159  Identities=19%  Similarity=0.368  Sum_probs=124.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|.+|||||||++++.+..+. .+.+|.+..+.  .+.+  ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999987654 35666655543  2333  45789999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-----CCcEEEeeeccCCC
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-----NIPYFETSAKEGFN  164 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~  164 (185)
                      ++++++++.+..|+..+....   ...+.|+++|+||+|+...    ...+++.++....+     .+.++++||++|.|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEK---ELRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcCh---hhCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            999999999888887776432   2225799999999999642    34455555443211     23688999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      ++++|+||.+.+....
T Consensus       149 v~~~f~~l~~~~~~~~  164 (169)
T cd04158         149 LYEGLDWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.2e-29  Score=172.33  Aligned_cols=165  Identities=35%  Similarity=0.536  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      .||+++|.+|+|||||++++....+.....++..... ...+...+..+.+.+||+||+..+...+..++..+|++++|+
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998887766666665443 445566677788999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |.++.++++.+..++..+......   .+.|+++|+||+|+...  +....++...+....+ ++++++||+++.|+.++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA  154 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999998888887765332   36799999999999753  3444555666666555 78999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 029929          169 FECIAKNALKNE  180 (185)
Q Consensus       169 ~~~i~~~~~~~~  180 (185)
                      +.++.+.+...+
T Consensus       155 ~~~l~~~~~~~~  166 (180)
T cd04137         155 FELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.1e-30  Score=177.09  Aligned_cols=161  Identities=16%  Similarity=0.267  Sum_probs=122.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|..|||||||++++....+. .+.|+.+.+..  .+.  ...+.+.+||+||++.+..++..+++.+|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999876654 35666665543  233  345789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~  162 (185)
                      |+|++++++++.+..++..+..   .....+.|+++++||+|+.+.    ...+++.....-.    ..+.++++||++|
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g  163 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCC----CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            9999999999887666655432   212236799999999999754    2233333332211    1134668999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      +|+.++++||.+.+.++
T Consensus       164 ~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        164 EGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999999988764

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.2e-29  Score=173.16  Aligned_cols=169  Identities=29%  Similarity=0.509  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      .||+|+|+.|+|||||++++....+.+.+.++....+ ...+.+++....+.+||++|+..+......+++.+|++++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777766666654443 345566777788999999998887776667788999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+....        .+....++...++...+..+++++||
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  155 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA  155 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence            999999999985 5777776543     258999999999985421        23344567777777777568999999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          160 KEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      ++|.|++++|+++.+.+..-++.+
T Consensus       156 ~~~~~v~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         156 LTGEGVDDVFEAATRAALLVRKSE  179 (187)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCcc
Confidence            999999999999999888766543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=6.5e-31  Score=176.41  Aligned_cols=156  Identities=16%  Similarity=0.285  Sum_probs=119.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||||++++....+. .+.++.+.+..  ....  ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999876654 34566665543  2222  45789999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (185)
                      |+|++++.+++.+..++..+....   ...+.|+++|+||+|+.+.    ...+++..+...    ...++++++||++|
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            999999999988877666554321   1236799999999998753    234455554321    11247899999999


Q ss_pred             CCHHHHHHHHHH
Q 029929          163 FNVEAAFECIAK  174 (185)
Q Consensus       163 ~~i~~~~~~i~~  174 (185)
                      .|++++++||.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.4e-30  Score=175.97  Aligned_cols=159  Identities=18%  Similarity=0.280  Sum_probs=120.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||||++++....+. .+.||.+.+...  +..  ..+.+.+||+||+..+...+..+++.+|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            3589999999999999999999866654 456666655432  333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (185)
                      |+|++++++++....++..+....   ...+.|+++|+||+|+.+..    ..+++......    ...+.++++||++|
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            999999999998877777664321   12367999999999997531    22222222211    11245778999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 029929          163 FNVEAAFECIAKNAL  177 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~  177 (185)
                      .|++++++||.+.+.
T Consensus       160 ~gv~e~~~~l~~~~~  174 (175)
T smart00177      160 DGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.8e-30  Score=172.89  Aligned_cols=154  Identities=17%  Similarity=0.312  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|||||||++++....+. .+.|+.+....  .+.+  ..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877665 35666665543  2233  3578999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFN  164 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~  164 (185)
                      |++++++++.+..++..+....   ...+.|+++++||+|+.+..    ..+++......    ...+.++++||++|+|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g  148 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAM----SAAEVTDKLGLHSLRNRNWYIQATCATSGDG  148 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence            9999999998877666654321   11257999999999996531    12222221110    1124578999999999


Q ss_pred             HHHHHHHHHH
Q 029929          165 VEAAFECIAK  174 (185)
Q Consensus       165 i~~~~~~i~~  174 (185)
                      ++++++||.+
T Consensus       149 v~~~~~~l~~  158 (159)
T cd04150         149 LYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.2e-29  Score=169.53  Aligned_cols=160  Identities=28%  Similarity=0.542  Sum_probs=128.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||+++|++..+...+.++.... ........+..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            589999999999999999999998866666665433 3445566778889999999999988877888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce---------eecHHHHHHHHHhcCCCcEEEee
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      |+++++++.... .|+..+.....     +.|+++|+||+|+......         ....++...+....+..+++++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  154 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS  154 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence            999999988764 46655544322     6799999999999765322         33466777777777745999999


Q ss_pred             eccCCCHHHHHHHHHH
Q 029929          159 AKEGFNVEAAFECIAK  174 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~  174 (185)
                      |++|.|+++++++|++
T Consensus       155 a~~~~gi~~l~~~i~~  170 (171)
T cd00157         155 ALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCCCCCHHHHHHHHhh
Confidence            9999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.8e-30  Score=174.72  Aligned_cols=161  Identities=17%  Similarity=0.299  Sum_probs=120.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|++|+|||||++++....+.. +.||.+..+.  .+..  ..+.+.+||+||++.++..+..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998776653 4566665543  2333  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (185)
                      |+|++++++++....++..+...   ....+.|+++|+||.|+....    ..+++......    ...+.++++||++|
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            99999999998877666555322   112357999999999986531    22222222111    11235678999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      .|++++++||.+.+.++
T Consensus       164 ~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        164 QGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999887764

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=2.5e-29  Score=168.55  Aligned_cols=163  Identities=24%  Similarity=0.350  Sum_probs=122.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||++++....+...+ +...... .....+.+..+.+.+|||||+..+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998876543 2222222 333445667789999999998877777777789999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCCHH
Q 029929           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVE  166 (185)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~  166 (185)
                      |++++++++.+. .|...+....     .+.|+++|+||+|+.+........+.+..+...... .+++++||+++.|++
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            999999999975 5666665432     167999999999997653211122333333333332 379999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      ++++.+.+.+.+
T Consensus       154 ~lf~~~~~~~~~  165 (166)
T cd01893         154 EVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=4.2e-30  Score=173.42  Aligned_cols=157  Identities=20%  Similarity=0.358  Sum_probs=120.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+. ...++.+..  ...+.++  .+.+.+||+||++.++..+..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999987543 445555533  3334444  478899999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++.+++....++..+....   ...+.|+++|+||+|+.+..    ..+++......    ...++++++||++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGAL----SEEEIREALELDKISSHHWRIQPCSAVT  159 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence            9999999999988877777665321   22378999999999997532    33444444321    2246899999999


Q ss_pred             CCCHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAK  174 (185)
Q Consensus       162 ~~~i~~~~~~i~~  174 (185)
                      |.|++++++++..
T Consensus       160 g~gi~~l~~~l~~  172 (173)
T cd04154         160 GEGLLQGIDWLVD  172 (173)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.97  E-value=6.1e-30  Score=170.82  Aligned_cols=156  Identities=17%  Similarity=0.280  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +|+++|.+|||||||++++.+... ...+.++.+.....  +.  ...+.+.+|||||+..+...+..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44556666644322  22  34578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFN  164 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~  164 (185)
                      |++++.++..+..++..+..... ....++|+++|+||+|+....    ..++......    ....++++++||++|.|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g  151 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL----TAVKITQLLGLENIKDKPWHIFASNALTGEG  151 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC----CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence            99999988887777776654311 112378999999999997532    1222222211    11124689999999999


Q ss_pred             HHHHHHHHHH
Q 029929          165 VEAAFECIAK  174 (185)
Q Consensus       165 i~~~~~~i~~  174 (185)
                      ++++++||.+
T Consensus       152 v~~~~~~l~~  161 (162)
T cd04157         152 LDEGVQWLQA  161 (162)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.3e-28  Score=170.30  Aligned_cols=166  Identities=29%  Similarity=0.600  Sum_probs=139.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||++|+..+...+..++..++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            34569999999999999999998888888888888888888777777788889999999999998888888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|+++..++..+..|+..+....     .+.|+++++||+|+...   ....+. ..+....+ +.++++|+++|.|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~  155 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNYN  155 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCC
Confidence            99999999999999999988887553     26799999999998642   222222 34445444 7899999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +++.+.+|++.+..+.
T Consensus       156 v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        156 FEKPFLWLARRLTNDP  171 (215)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999988654

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=6.7e-30  Score=170.90  Aligned_cols=155  Identities=18%  Similarity=0.246  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|++|+|||||++++.+..+...+.|+.+...    ..++...+.+.+||+||+..++..+..+++.+|++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            479999999999999999998877777777776543    2344556889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec--HHHHHHHHHhcCCCcEEEeeecc------
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCASKGNIPYFETSAKE------  161 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~------  161 (185)
                      ++++.++.....|+..+....     +++|+++|+||+|+.........  ...+..++...+ ++++++||++      
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~  150 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR  150 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence            999999988887777664321     37899999999999754211100  012233333333 7889999988      


Q ss_pred             CCCHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAK  174 (185)
Q Consensus       162 ~~~i~~~~~~i~~  174 (185)
                      ++|++++|+.++.
T Consensus       151 ~~~v~~~~~~~~~  163 (164)
T cd04162         151 MEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.8e-29  Score=153.92  Aligned_cols=169  Identities=37%  Similarity=0.643  Sum_probs=152.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      +..|+-+++|..|+|||.|+..|...++-..-..+++.++....+.+.+..+++++|||.|++.|+.....+++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            46799999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++.+.+...+..|+......    -.++.-+++++||.|+...  +.+..++.++|+...+ ..|.++|+++|.++
T Consensus        89 mvyditrrstynhlsswl~dar~l----tnpnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv  161 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV  161 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhcc----CCCceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence            999999999999999999877543    3347778899999999876  8899999999999888 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++.|-...+.+-.+.+
T Consensus       162 edafle~akkiyqniq  177 (215)
T KOG0097|consen  162 EDAFLETAKKIYQNIQ  177 (215)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999887777765543

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=3e-29  Score=169.21  Aligned_cols=159  Identities=30%  Similarity=0.508  Sum_probs=123.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|+.||||||+++++...... ...||.+....  .+.+.  .+.+.+||.+|+..++..|..++..+|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence            56799999999999999999999876533 35566554443  33343  468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--h---cCCCcEEEeeec
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--S---KGNIPYFETSAK  160 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~s~~  160 (185)
                      ||+|.++++.+......+..+.....   ..++|++|++||+|+.+.    ...+++.....  .   ...+.++.|||.
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~  159 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDA----MSEEEIKEYLGLEKLKNKRPWSVFSCSAK  159 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTS----STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred             EEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCc----chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence            99999999888887766666654322   237899999999998764    23344443322  1   124678999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029929          161 EGFNVEAAFECIAKNA  176 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (185)
                      +|+|+.+.++||.+++
T Consensus       160 ~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  160 TGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=9.6e-31  Score=161.17  Aligned_cols=161  Identities=42%  Similarity=0.692  Sum_probs=145.3

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEEC
Q 029929           12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   90 (185)
                      +++|..++|||.|+-++...-+. ....++.+.++..+.+..++..+++++|||.||+.|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999877766554 45678899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929           91 NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      .+..||++++.|+.++.++..+    .+.+.+++||+|+.++  +.+..++.+.++..++ +||.++||++|.+++..|-
T Consensus        81 ankasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~  153 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFL  153 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHH
Confidence            9999999999999999988765    5678899999999876  7788889999999998 9999999999999999999


Q ss_pred             HHHHHHhhc
Q 029929          171 CIAKNALKN  179 (185)
Q Consensus       171 ~i~~~~~~~  179 (185)
                      .|.+.+...
T Consensus       154 ~ia~~l~k~  162 (192)
T KOG0083|consen  154 AIAEELKKL  162 (192)
T ss_pred             HHHHHHHHh
Confidence            999887754

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=5.3e-29  Score=168.16  Aligned_cols=155  Identities=23%  Similarity=0.346  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|++|+|||||++++....+.. +.++.+.+..  .+.++  ...+.+||+||+..+...+..+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999998877654 4566654443  23333  47889999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGF  163 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~  163 (185)
                      +|+++++++.....++..+...   ....+.|+++++||+|+...    ...+++.....    ....++++++||++|.
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~---~~~~~~p~viv~NK~Dl~~~----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~  162 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAH---EDLRKAVLLVLANKQDLKGA----MTPAEISESLGLTSIRDHTWHIQGCCALTGE  162 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence            9999998887776666655432   22236799999999998753    12222222211    1123579999999999


Q ss_pred             CHHHHHHHHHH
Q 029929          164 NVEAAFECIAK  174 (185)
Q Consensus       164 ~i~~~~~~i~~  174 (185)
                      |+++++++|.+
T Consensus       163 gi~e~~~~l~~  173 (174)
T cd04153         163 GLPEGLDWIAS  173 (174)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=3.7e-29  Score=167.88  Aligned_cols=154  Identities=25%  Similarity=0.381  Sum_probs=114.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      +|+++|++|+|||||++++......      ..+.++.+...  ..+.++  ...+.+||+||+..+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321      22344444443  233343  4788999999999998888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh------cCCCcEEEe
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS------KGNIPYFET  157 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  157 (185)
                      +++|+|+++++++.....++..+.+..   ...+.|+++++||+|+...    ...++...+...      ...++++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEccccccC----CCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999888887777777665432   2237899999999998653    223333333322      123689999


Q ss_pred             eeccCCCHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAK  174 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~  174 (185)
                      ||++|.|++++++||.+
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.3e-28  Score=166.44  Aligned_cols=165  Identities=35%  Similarity=0.565  Sum_probs=149.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||+|..+|....+...+.|+.+ +.+...+.+++..+.+.++||+|+.++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999997 6678888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      ||+++++.||+.+..++..+.+..   ....+|+++|+||+|+...  +.+..++...++.... ++++++||+.+.+++
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~---~~~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~  154 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVK---GRDDVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD  154 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh---CcCCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence            999999999999999999884432   2336899999999999987  8889999999988777 789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      ++|..|.+.+..
T Consensus       155 ~~F~~L~r~~~~  166 (196)
T KOG0395|consen  155 EVFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=5.3e-29  Score=167.08  Aligned_cols=157  Identities=18%  Similarity=0.253  Sum_probs=118.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      .|+++|++|||||||++++.+. +...+.++.+...  ..+.+  ..+.+.+||+||+..++..+..+++.+|++|+|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4799999999999999999976 5556667766543  23333  35788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH--HHHHHHHhcC-CCcEEEeeeccC----
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASKG-NIPYFETSAKEG----  162 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~~~~----  162 (185)
                      ++++.+++.+..++..+....   ...+.|+++|+||+|+.+........+  .+..++...+ .+.+++|||++|    
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCc---cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            999999998888888776432   223679999999999976421111111  1122222222 357888999998    


Q ss_pred             --CCHHHHHHHHHH
Q 029929          163 --FNVEAAFECIAK  174 (185)
Q Consensus       163 --~~i~~~~~~i~~  174 (185)
                        .|+.+.++||.+
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=1.3e-28  Score=163.81  Aligned_cols=153  Identities=19%  Similarity=0.340  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|.+|||||||++++++... ....++.+....  .+.+.  ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 334455544332  33333  4688999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCCH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i  165 (185)
                      +++++++.....++..+.....   ..+.|+++++||+|+....    ..++......    ....++++++||++|.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            9999999988887777765433   2377999999999997642    2222333222    123468999999999999


Q ss_pred             HHHHHHHHH
Q 029929          166 EAAFECIAK  174 (185)
Q Consensus       166 ~~~~~~i~~  174 (185)
                      ++++++|..
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=6.5e-29  Score=165.60  Aligned_cols=154  Identities=22%  Similarity=0.351  Sum_probs=115.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|++|||||||++++.+..+.. ..++.+.+..  .+.. ...+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887653 3455554432  2333 245789999999999888888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--hc---CCCcEEEeeeccCCC
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK---GNIPYFETSAKEGFN  164 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~  164 (185)
                      ++++.++.....++..+....   ...+.|+++|+||+|+....    ..+++.....  ..   ..++++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156          77 SSDEARLDESQKELKHILKNE---HIKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence            999988888877777665432   12368999999999996431    1222222211  11   225799999999999


Q ss_pred             HHHHHHHHHH
Q 029929          165 VEAAFECIAK  174 (185)
Q Consensus       165 i~~~~~~i~~  174 (185)
                      +++++++|.+
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=6.2e-29  Score=165.40  Aligned_cols=153  Identities=21%  Similarity=0.350  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|++++|||||++++....+.. ..++.+.+..  .+..  ....+.+|||||+..+...+..+++.+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776543 3455544432  2222  34788999999999998888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCCH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFNV  165 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~i  165 (185)
                      ++++.++.....++..+.+.   ....+.|+++|+||+|+....    ....+......    ....+++++||++|.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEE---EELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhc---hhhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            99988777655554443322   122367999999999997542    11222211110    11246999999999999


Q ss_pred             HHHHHHHHH
Q 029929          166 EAAFECIAK  174 (185)
Q Consensus       166 ~~~~~~i~~  174 (185)
                      ++++++|.+
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=3.7e-28  Score=154.56  Aligned_cols=167  Identities=22%  Similarity=0.351  Sum_probs=131.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +.+.++|+++|..||||||++++|.+.+ .+...|+.+.......+    ..+.+++||.+||..++..|..|+...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4568999999999999999999999887 44556777665554443    457999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee-ec-HHHHHHHHHhcCCCcEEEeeeccC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VS-EKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      |+|+|.+++..++.....++.+..   .....+.|+++++||.|+...-... +. .-.+..++...+ ++++.||+.+|
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg  163 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG  163 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence            999999999888887666665544   3333367999999999998541111 11 122334444444 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcC
Q 029929          163 FNVEAAFECIAKNALKNE  180 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~  180 (185)
                      +++.+.++||...+..+.
T Consensus       164 e~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             ccHHHHHHHHHHHHHHHh
Confidence            999999999999887754

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=6.2e-28  Score=164.23  Aligned_cols=157  Identities=18%  Similarity=0.282  Sum_probs=117.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|||||||++++.+..+.. +.++.+...  ..+.+.  .+.+.+||+||+..++..+..++..+|++++
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45899999999999999999999876542 334443322  223333  4788999999999888889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----------cCCCcEE
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPYF  155 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  155 (185)
                      |+|+++++++.....++..+.+..   ...+.|+++|+||+|+...    ...+++.....-           .....++
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            999999988888776666654321   1236799999999998643    334444433311           1235699


Q ss_pred             EeeeccCCCHHHHHHHHHHH
Q 029929          156 ETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +|||+++.|++++++||.++
T Consensus       164 ~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      164 MCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EeecccCCChHHHHHHHHhh
Confidence            99999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.5e-27  Score=163.55  Aligned_cols=152  Identities=25%  Similarity=0.408  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-----CcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      +||+++|..|+|||||++++.+..+...+.+|.+.++....+.+.     +..+.+.+||++|++.+..+...+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877776666664     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCceeecHH----HHHH
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASP---------------SDPENFPFVVLGNKTDVDGGNSRVVSEK----KAKA  144 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~----~~~~  144 (185)
                      +|+|||++++++++.+..|+..+......               ....++|+++|+||+|+.+.  +....+    ....
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence            99999999999999999999998764311               12347899999999999764  333333    2334


Q ss_pred             HHHhcCCCcEEEeeeccCC
Q 029929          145 WCASKGNIPYFETSAKEGF  163 (185)
Q Consensus       145 ~~~~~~~~~~~~~s~~~~~  163 (185)
                      ++...+ ++.+..++.++.
T Consensus       159 ia~~~~-~~~i~~~c~~~~  176 (202)
T cd04102         159 VAEQGN-AEEINLNCTNGR  176 (202)
T ss_pred             HHHhcC-CceEEEecCCcc
Confidence            455555 888888888543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-29  Score=160.93  Aligned_cols=169  Identities=45%  Similarity=0.703  Sum_probs=149.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC---------CcEEEEEEecCCChhhhcccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~   76 (185)
                      .+.++.+.+|..|+||||++.+.+..++......+.+.++..+.+-+.         +..+.+++|||+|++.|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            345788999999999999999999999999999999998887776653         23467899999999999999999


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.+=++++++|.++..+|-++..|+.++.-++.-.   +.-+++++||+||.+.  +.+...+...++..++ +|+++
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYfE  160 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYFE  160 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCeee
Confidence            9999999999999999999999999999998765432   4358999999999877  8888999999999998 99999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcC
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +||-+|.++++.++.+...+..+.
T Consensus       161 TSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  161 TSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             eccccCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999988887653

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=7.7e-28  Score=164.72  Aligned_cols=157  Identities=23%  Similarity=0.358  Sum_probs=119.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.++|+++|++|||||||++++.+..+. .+.++.+..  ...+.++  ...+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999987754 344554433  2334444  3678899999999888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc---------------CC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------GN  151 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~  151 (185)
                      |+|++++++++....++..+....   ...+.|+++++||+|+...    ...+++.......               ..
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~---~~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDE---ELANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCc---cccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCcee
Confidence            999999988887777777665432   2236799999999998642    3345555544321               12


Q ss_pred             CcEEEeeeccCCCHHHHHHHHHHH
Q 029929          152 IPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       152 ~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +++++|||++|+|+.++++||.+.
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhh
Confidence            468999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=2.3e-28  Score=163.12  Aligned_cols=168  Identities=28%  Similarity=0.496  Sum_probs=149.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ..++++|+|..++|||+|+..+..+.++..+.||.. +-+...+.++ +..+.+.+|||.||+++..++...+.++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            458999999999999999999999999999999997 5556667785 89999999999999999998888999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +||+++++++++++ .+|+.++..+++     +.|+|+|++|.||....          ...+..++...++...+...+
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y  156 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY  156 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence            99999999999997 679999988773     78999999999998432          235678889999999998999


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++|||++..|++++|+..+..+....
T Consensus       157 ~EcSa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  157 LECSALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             eeehhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999999999887653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.96  E-value=1.8e-27  Score=158.02  Aligned_cols=154  Identities=27%  Similarity=0.447  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      .|+++|++|||||||++++.+..+...+.++.+.....  ....  .+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37899999999999999999998887777777665543  2333  3789999999999999889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCCH
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i  165 (185)
                      +++++++.....++..+...   ....+.|+++|+||+|+.+...    .........    ....++++++|+++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  149 (159)
T cd04159          77 AADRTALEAAKNELHDLLEK---PSLEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNI  149 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence            99988888776666665432   1223679999999999875421    111111111    112367899999999999


Q ss_pred             HHHHHHHHH
Q 029929          166 EAAFECIAK  174 (185)
Q Consensus       166 ~~~~~~i~~  174 (185)
                      ++++++|.+
T Consensus       150 ~~l~~~l~~  158 (159)
T cd04159         150 DIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhh
Confidence            999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=1.1e-26  Score=170.00  Aligned_cols=166  Identities=17%  Similarity=0.130  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~   81 (185)
                      ..|+++|.+|||||||++++++........+.++..+....+.+.+ ...+++||+||..+       ....+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            5799999999999999999998765545556666666666666532 34688999999532       111223345679


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      +++++|+|+++.++++.+..|..++..+...  ..++|+++|+||+|+.+.  .....+....+....+ ++++++||++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAkt  312 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAVT  312 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence            9999999999888888888888887655321  126799999999999754  2222333444444444 7899999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 029929          162 GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++|+++++++|.+.+...+
T Consensus       313 g~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        313 GEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            9999999999999887544

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=6.3e-27  Score=156.47  Aligned_cols=154  Identities=20%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      .|+++|.+|+|||||+++|.+..   +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999999643   2222334444444444444442 4588999999998887766777889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEEeeecc
Q 029929           87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKE  161 (185)
Q Consensus        87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~  161 (185)
                      |+|+++   +++.+.+.    .+ ....     ..|+++++||+|+..........+++.+.....  ...+++++||++
T Consensus        81 V~d~~~~~~~~~~~~~~----~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (164)
T cd04171          81 VVAADEGIMPQTREHLE----IL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT  150 (164)
T ss_pred             EEECCCCccHhHHHHHH----HH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence            999987   33333221    11 1111     238999999999976421122233444444432  347999999999


Q ss_pred             CCCHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAK  174 (185)
Q Consensus       162 ~~~i~~~~~~i~~  174 (185)
                      ++|++++++.+..
T Consensus       151 ~~~v~~l~~~l~~  163 (164)
T cd04171         151 GEGIEELKEYLDE  163 (164)
T ss_pred             CcCHHHHHHHHhh
Confidence            9999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=1.2e-26  Score=156.11  Aligned_cols=160  Identities=19%  Similarity=0.124  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccch---hccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~d   82 (185)
                      +|+++|.+|||||||++++.+........+..+.+.....+.+.+ ...+.+|||||...    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654333333333333333333333 24789999999632    11222233   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      ++++|+|++++ ++++.+..|...+......  ..+.|+++|+||+|+....   ...+....+.......+++++|+++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~  155 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT  155 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence            99999999998 7888888888877654321  2267999999999997642   2233344444443347899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAKN  175 (185)
Q Consensus       162 ~~~i~~~~~~i~~~  175 (185)
                      +.|+++++++|.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=3.3e-27  Score=159.30  Aligned_cols=157  Identities=23%  Similarity=0.361  Sum_probs=114.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|||||||++++.+..+. ...++.+...  ..+...  +..+.+||+||+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            34689999999999999999999987653 2344444332  233333  367889999999888888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~  161 (185)
                      +|+|+++..++.....++..+.....   ..++|+++++||+|+....    ..+++.......    ..++++++||++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence            99999998888877666665544322   2268999999999987532    122222221111    113578999999


Q ss_pred             CCCHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAK  174 (185)
Q Consensus       162 ~~~i~~~~~~i~~  174 (185)
                      |+|++++++||.+
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.8e-26  Score=163.91  Aligned_cols=145  Identities=28%  Similarity=0.514  Sum_probs=120.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-------------cEEEEEEecCCChhhhcc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------RLFTLQIWDTAGQERFQS   72 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~g~~~~~~   72 (185)
                      ...+||+++|..|+|||||++++.+..+...+.+|.+.++....+.+++             ..+.+.+|||+|++.+..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3568999999999999999999999988888888998887767666542             467899999999999999


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--------CCCCCcEEEEEeCCCCCCCCc-ee---ecHH
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPS--------DPENFPFVVLGNKTDVDGGNS-RV---VSEK  140 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~iiv~nK~Dl~~~~~-~~---~~~~  140 (185)
                      ++..+++.+|++|+|||++++++++.+..|+..+.......        ...++|++||+||+||..... +.   ...+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            99999999999999999999999999999999998764211        113589999999999976422 12   3578


Q ss_pred             HHHHHHHhcC
Q 029929          141 KAKAWCASKG  150 (185)
Q Consensus       141 ~~~~~~~~~~  150 (185)
                      ++++++...+
T Consensus       179 ~a~~~A~~~g  188 (334)
T PLN00023        179 AARQWVEKQG  188 (334)
T ss_pred             HHHHHHHHcC
Confidence            8889988765

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=1.7e-26  Score=155.08  Aligned_cols=156  Identities=17%  Similarity=0.100  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc---------ccchhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------GVAFYR   79 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~~~~   79 (185)
                      .+|+++|.+|+|||||++++.+..+.....+..+.+.......  .....+++|||||+......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD--YKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc--cCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            3799999999999999999998876533333333333333332  23578999999997421110         001112


Q ss_pred             cCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           80 GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      .+|++++|+|+++..++  +....|+..+....     .+.|+++|+||+|+.....  ..  ....+... ..++++++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~--~~--~~~~~~~~-~~~~~~~~  148 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFED--LS--EIEEEEEL-EGEEVLKI  148 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchhh--HH--HHHHhhhh-ccCceEEE
Confidence            36899999999987653  44445666554332     2679999999999975421  11  13333333 34789999


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||++|.|+++++++|.+.+
T Consensus       149 Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         149 STLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EecccCCHHHHHHHHHHHh
Confidence            9999999999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=2.9e-26  Score=155.47  Aligned_cols=156  Identities=19%  Similarity=0.243  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-------CCCccC------cceeeeEEEE--EEE---CCcEEEEEEecCCChhhhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~-------~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~~   71 (185)
                      +|+++|.+++|||||+++|++...       ...+.+      +.+.+.....  ..+   ++..+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            789999999999999999987431       111111      1122222222  222   5667889999999999998


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  150 (185)
                      ..+..+++.+|++|+|+|+++..+......|....    .    .++|+++|+||+|+.+..    ......++....+ 
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~  149 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL  149 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence            88889999999999999999876665554443322    1    267999999999986431    1122223333333 


Q ss_pred             -CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          151 -NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       151 -~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                       ..+++++||++|.|+++++++|.+.++
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         150 DPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence             235899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.3e-25  Score=151.25  Aligned_cols=142  Identities=35%  Similarity=0.593  Sum_probs=122.5

Q ss_pred             CCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q 029929           32 KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS  111 (185)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  111 (185)
                      .+.+.+.+|.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+|||++++++++.+..|+..+.....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45667889999899888888889899999999999999999999999999999999999999999999999888865432


Q ss_pred             CCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          112 PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       112 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                          .+.|+++|+||+|+...  +.+..++...++...+ +.++++||++|.|++++|++|++.+++..
T Consensus        84 ----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         84 ----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             ----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence                36799999999999754  4456777777777665 78999999999999999999999997643

>cd01878 HflX HflX subfamily

Probab=99.95  E-value=5.1e-26  Score=157.38  Aligned_cols=156  Identities=20%  Similarity=0.208  Sum_probs=109.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~   76 (185)
                      ...++|+++|++|||||||++++++........+..+.+.....+.+.+. ..+.+|||||...         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            44589999999999999999999988754333334444444444444443 3788999999622         1111 12


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .+..+|++++|+|++++.++.....|...+....    ..+.|+++|+||+|+.......       ..... ...++++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~----~~~~~viiV~NK~Dl~~~~~~~-------~~~~~-~~~~~~~  184 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG----AEDIPMILVLNKIDLLDDEELE-------ERLEA-GRPDAVF  184 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC----cCCCCEEEEEEccccCChHHHH-------HHhhc-CCCceEE
Confidence            3568999999999999888877666665554332    1257999999999997642111       22232 3478999


Q ss_pred             eeeccCCCHHHHHHHHHHH
Q 029929          157 TSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~  175 (185)
                      +||+++.|+++++++|.+.
T Consensus       185 ~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         185 ISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EEcCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.95  E-value=1.9e-25  Score=148.11  Aligned_cols=157  Identities=25%  Similarity=0.545  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|.+|+|||||++++........+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999998877777778888777776777776688999999999888888888888999999999


Q ss_pred             ECCCh-hhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           89 DVNVM-KSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        89 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |.... .++.... .+...+......    +.|+++++||+|+....    ............+..+++++||.++.|+.
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~  153 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNID  153 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence            99876 6665554 566655554432    67999999999997642    23333444444555789999999999999


Q ss_pred             HHHHHHH
Q 029929          167 AAFECIA  173 (185)
Q Consensus       167 ~~~~~i~  173 (185)
                      +++++|.
T Consensus       154 ~~~~~l~  160 (161)
T TIGR00231       154 SAFKIVE  160 (161)
T ss_pred             HHHHHhh
Confidence            9999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.94  E-value=2.1e-26  Score=150.16  Aligned_cols=148  Identities=18%  Similarity=0.271  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh------cccccchh--cc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--RG   80 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~   80 (185)
                      ++|+++|.||+|||||+|+|++........|+.+.+.....+.+.+  ..+.++|+||....      ......++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999997767778888888777777766  57788899993222      12223333  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      .|++++|+|+++.+.-   ..+..++.+.       ++|+++++||+|...........+.   +...++ +|++++||.
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id~~~---Ls~~Lg-~pvi~~sa~  144 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLEL-------GIPVVVVLNKMDEAERKGIEIDAEK---LSERLG-VPVIPVSAR  144 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE-HHH---HHHHHT-S-EEEEBTT
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEECHHH---HHHHhC-CCEEEEEeC
Confidence            9999999999974322   2333334322       6899999999999876555554444   444455 899999999


Q ss_pred             cCCCHHHHHHHH
Q 029929          161 EGFNVEAAFECI  172 (185)
Q Consensus       161 ~~~~i~~~~~~i  172 (185)
                      +++|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.7e-26  Score=148.52  Aligned_cols=162  Identities=20%  Similarity=0.330  Sum_probs=128.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ....+|+++|..+|||||++++|........ .||.+.......+.    +..+++||.+|+..++..|..|++..+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            3568999999999999999999987775544 78888776666553    689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~  161 (185)
                      ||+|.++++.+..+...+..+..   .....+.|+++++||.|+++.-    ...++.....    ....+.+..|+|.+
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~---~~~l~~~~llv~aNKqD~~~al----s~~ei~~~L~l~~l~~~~w~iq~~~a~~  162 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLA---EPELRNAPLLVFANKQDLPGAL----SAAEITNKLGLHSLRSRNWHIQSTCAIS  162 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHc---CcccCCceEEEEechhhccccC----CHHHHHhHhhhhccCCCCcEEeeccccc
Confidence            99999999998887665555543   3334588999999999998652    2222222221    11347889999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 029929          162 GFNVEAAFECIAKNALKN  179 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (185)
                      |+|+.+.++|+.+.+...
T Consensus       163 G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  163 GEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cccHHHHHHHHHHHHhcc
Confidence            999999999999988754

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=7.3e-26  Score=148.03  Aligned_cols=135  Identities=24%  Similarity=0.317  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh-----hhcccccchhccCcEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC   84 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~   84 (185)
                      ||+++|.+|+|||||++++.+....  +.++.+.+       +.     -.+|||||+.     .+.... ..++.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999977642  22222211       11     1589999972     233332 347899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++.++.. ..|....          ..|+++|+||+|+.+.   ....+....++...+..+++++||++|.|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  132 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEA---DVDIERAKELLETAGAEPIFEISSVDEQG  132 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCc---ccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            99999999888754 2332211          2399999999998752   23455566666666545899999999999


Q ss_pred             HHHHHHHHH
Q 029929          165 VEAAFECIA  173 (185)
Q Consensus       165 i~~~~~~i~  173 (185)
                      +++++++|.
T Consensus       133 i~~l~~~l~  141 (142)
T TIGR02528       133 LEALVDYLN  141 (142)
T ss_pred             HHHHHHHHh
Confidence            999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=2.6e-25  Score=159.65  Aligned_cols=158  Identities=20%  Similarity=0.089  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchhcc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYRG   80 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~   80 (185)
                      +|+++|.+|+|||||+|+|++.+... ...+.++......... .+ ..++.+|||||.....        .....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987542 2333333333222222 22 3578999999954321        112345689


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++++|+|+++..+.+  ..+...+..       .+.|+++|+||+|+...   .........+....+..+++++||+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence            99999999999876654  233333321       16799999999999742   2223334444444443489999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCC
Q 029929          161 EGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +|.|+++++++|.+.+++..+
T Consensus       148 ~g~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             CCCCHHHHHHHHHHhCCCCCC
Confidence            999999999999999887664

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=3.1e-25  Score=148.86  Aligned_cols=159  Identities=22%  Similarity=0.213  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      .|+++|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887766544455444443444433 13568899999999888888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH-----hcCCCcEEEeeeccCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-----SKGNIPYFETSAKEGF  163 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~  163 (185)
                      |+++........ .+..+..       .++|+++|+||+|+...... ........+..     ....++++++|+++|.
T Consensus        82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            998743222211 1122211       26799999999998753211 11111211111     1123689999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 029929          164 NVEAAFECIAKNAL  177 (185)
Q Consensus       164 ~i~~~~~~i~~~~~  177 (185)
                      |+.+++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01889 SelB_euk SelB subfamily

Probab=99.94  E-value=2.1e-25  Score=152.88  Aligned_cols=163  Identities=18%  Similarity=0.094  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC----C---CCCccCcceeeeEEEEEEEC------------CcEEEEEEecCCChhh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK----F---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER   69 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~   69 (185)
                      ++|+++|++|+|||||+++++...    +   .....++.+.+.......+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999998731    1   11122233333333333332            3357899999999876


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-  148 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-  148 (185)
                      +........+.+|++++|+|+.+.........+.  +...   .   +.|+++++||+|+......+...+++.+.... 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~  152 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---L---CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT  152 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---c---CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence            6555445567789999999998744333222111  1111   1   56999999999997543222223333332111 


Q ss_pred             -----cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       149 -----~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                           ...++++++||++|.|+++++++|...++..
T Consensus       153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence                 2347899999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.94  E-value=6.9e-25  Score=160.47  Aligned_cols=161  Identities=18%  Similarity=0.134  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----ccccc---hhccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVA---FYRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~   81 (185)
                      ..|+++|.+|||||||+++++.........+.++..+....+.+.+ ...+++||+||..+..    .+...   .+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5899999999999999999998765444445555666666665553 3578999999964221    22223   34569


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      |++++|+|+++.   ++++.+..|..++......  ..+.|+++|+||+|+....   ...+....+....+ .+++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~-~~vi~iS  310 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG-KPVFPIS  310 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC-CcEEEEE
Confidence            999999999976   6777777777776654321  1267999999999997641   12333444444444 7899999


Q ss_pred             eccCCCHHHHHHHHHHHH
Q 029929          159 AKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~  176 (185)
                      |++++|+++++++|.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.93  E-value=7.2e-25  Score=145.68  Aligned_cols=148  Identities=20%  Similarity=0.219  Sum_probs=107.3

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh--ccCcEE
Q 029929           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCC   84 (185)
Q Consensus        13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~   84 (185)
                      ++|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||+..+...      ...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            579999999999999998875555566666666666666654  57899999998765532      34445  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|+++++...   .+...+..       .++|+++|+||+|+.......   .....+....+ .+++++|+.++.|
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~iSa~~~~~  144 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRGIK---IDLDKLSELLG-VPVVPTSARKGEG  144 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhcccccch---hhHHHHHHhhC-CCeEEEEccCCCC
Confidence            9999999765432   23333321       167999999999997642221   22334444455 7999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029929          165 VEAAFECIAKNA  176 (185)
Q Consensus       165 i~~~~~~i~~~~  176 (185)
                      +.++++++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=2.2e-24  Score=141.90  Aligned_cols=155  Identities=48%  Similarity=0.792  Sum_probs=117.0

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECC
Q 029929           13 ILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        13 viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   91 (185)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||+..........++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998887 44444554 6666677776677889999999998888777788889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929           92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC  171 (185)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  171 (185)
                      ++.+.+....+.......   ....+.|+++++||+|+.....  ................+++++|+.++.|+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~---~~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          80 DRESFENVKEWLLLILIN---KEGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             CHHHHHHHHHHHHHHHHh---hccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            998888876653222211   1223789999999999976422  11221122233344589999999999999999999


Q ss_pred             HH
Q 029929          172 IA  173 (185)
Q Consensus       172 i~  173 (185)
                      |.
T Consensus       155 l~  156 (157)
T cd00882         155 LA  156 (157)
T ss_pred             Hh
Confidence            86

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=149.74  Aligned_cols=159  Identities=20%  Similarity=0.224  Sum_probs=103.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------hhhhcccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLG   74 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~   74 (185)
                      ...++|+++|.+|+|||||++++.+..+.....++.+...  ..+.+.    .+.+|||||           ++.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4568999999999999999999998876655555554332  223222    588999999           44555544


Q ss_pred             cchh----ccCcEEEEEEECCChhhHHHHHHHH--------HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929           75 VAFY----RGADCCVLVYDVNVMKSFDNLNNWR--------EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (185)
Q Consensus        75 ~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  142 (185)
                      ..++    ..++++++|+|.+......  ..|.        ..+...+..   .++|+++|+||+|+.+..     .+..
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-----~~~~  150 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-----DEVL  150 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH-----HHHH
Confidence            4444    3467888999986532110  1110        111111111   267999999999997542     2233


Q ss_pred             HHHHHhcCC--------CcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          143 KAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       143 ~~~~~~~~~--------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      .++....+.        .+++++||++| |+++++++|.+.+.+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            333333331        25899999999 999999999998876543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.93  E-value=7.5e-25  Score=149.64  Aligned_cols=158  Identities=22%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------cceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      +|+++|.+|+|||||++++++.........                +.+..........  ....+.+|||||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998776543211                1222222222322  3468899999999888888


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----  149 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----  149 (185)
                      +..+++.+|++++|+|+.++..... ..++..+..       .+.|+++++||+|+..........+...+.....    
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS  150 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence            8888999999999999987654432 223332221       2679999999999986433333344444444332    


Q ss_pred             ---------CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          150 ---------GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       150 ---------~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                               ...+++++||++|.|+++++++|.+.++
T Consensus       151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                     2478999999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-27  Score=151.96  Aligned_cols=168  Identities=30%  Similarity=0.537  Sum_probs=150.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++++++|..++||||+|+++|..-+...+..+++.++....+.+.+..+...+||++|+++|......|++.+.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            45899999999999999999999999999999999999888888888888888999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      ||+.++..+|+....|+..+..-..     .+|.++|-||+|+.+.  ......+....+..++ ..++.+|+++..|+.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVM  170 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhH
Confidence            9999999999999999999876554     7899999999999986  4566677777777776 889999999999999


Q ss_pred             HHHHHHHHHHhhcCCc
Q 029929          167 AAFECIAKNALKNEPQ  182 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~~  182 (185)
                      ++|.+|++.+.++.++
T Consensus       171 ~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988766443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.93  E-value=5.8e-26  Score=142.12  Aligned_cols=160  Identities=23%  Similarity=0.398  Sum_probs=127.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ...+.++|..+||||||.+......+.+...|+.+...    .++....+.+.+||.||+..|+.+|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            36889999999999999999998888888888887544    35556778899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH-----HhcCCCcEEEeeeccC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-----ASKGNIPYFETSAKEG  162 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~  162 (185)
                      +|+++++..+....-++.++..   ..-.++|+++++||.|+++.    .....+....     ... .+..+.+|+++.
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdR-EvcC~siScke~  167 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDR-EVCCFSISCKEK  167 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCccc----ccHHHHHHHhCccccccc-eEEEEEEEEcCC
Confidence            9999998888776555555433   33348899999999999875    2222222211     112 267899999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      .+++.+.+||++.....
T Consensus       168 ~Nid~~~~Wli~hsk~~  184 (186)
T KOG0075|consen  168 VNIDITLDWLIEHSKSL  184 (186)
T ss_pred             ccHHHHHHHHHHHhhhh
Confidence            99999999999876543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=2e-24  Score=159.40  Aligned_cols=154  Identities=20%  Similarity=0.196  Sum_probs=111.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh-h--------hhcccccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-E--------RFQSLGVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-~--------~~~~~~~~~   77 (185)
                      ..++|+++|.+|+|||||+|+|++........++.+.++....+.+.+. ..+.+|||+|. .        .+... ...
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence            4589999999999999999999998755444556666776777776433 47889999996 2        12221 224


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +..+|++++|+|++++.+.+....|...+....    ..+.|+++|+||+|+....  .     ......  ...+++++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~----~~~~piIlV~NK~Dl~~~~--~-----v~~~~~--~~~~~i~i  332 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG----AEDIPQLLVYNKIDLLDEP--R-----IERLEE--GYPEAVFV  332 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc----cCCCCEEEEEEeecCCChH--h-----HHHHHh--CCCCEEEE
Confidence            678999999999999888777655554443321    1257999999999997531  1     111111  12468999


Q ss_pred             eeccCCCHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~  175 (185)
                      ||++|.|+++++++|.+.
T Consensus       333 SAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EccCCCCHHHHHHHHHhh
Confidence            999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.93  E-value=1.7e-24  Score=148.56  Aligned_cols=149  Identities=18%  Similarity=0.167  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCCCCCc------------cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN--RKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   74 (185)
                      .+|+++|.+++|||||+++|+.  ..+....            .++.+.+.......+......+.+|||||+..+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999987  3333221            1223334444444455566789999999999999999


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-----
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----  149 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----  149 (185)
                      ..+++.+|++++|+|+++.. ......++.....       .++|+++|+||+|+.... .....+++..+....     
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  153 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence            99999999999999998732 2222223332221       167999999999997532 122234444444221     


Q ss_pred             -CCCcEEEeeeccCCCHH
Q 029929          150 -GNIPYFETSAKEGFNVE  166 (185)
Q Consensus       150 -~~~~~~~~s~~~~~~i~  166 (185)
                       ..++++++||++|.|+.
T Consensus       154 ~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         154 QLDFPVLYASAKNGWASL  171 (194)
T ss_pred             cCccCEEEeehhcccccc
Confidence             13789999999997653

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=146.55  Aligned_cols=168  Identities=36%  Similarity=0.551  Sum_probs=132.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|+.|||||||++++.+..+...+.++.+..+...........+.+.+|||+|+++++..+..++..++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999988888887777776666665578899999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhc--CCCcE
Q 029929           88 YDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASK--GNIPY  154 (185)
Q Consensus        88 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~--~~~~~  154 (185)
                      +|..+ ..+.+....|...+.....    ...|+++++||+|+.....          +..............  ....+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL  160 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence            99999 5555556778888766543    3679999999999987532          112222222222221  12348


Q ss_pred             EEeeec--cCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAK--EGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~--~~~~i~~~~~~i~~~~~~~  179 (185)
                      +++|++  ++.++.+++..+...+...
T Consensus       161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         161 LETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             eEeecccCCCcCHHHHHHHHHHHHHHh
Confidence            999999  9999999999999888643

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=1.2e-23  Score=157.75  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccch---hccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~   81 (185)
                      ..|+++|.+|||||||++++++........+.++..+....+.+.+ ...+++||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            3899999999999999999998775544456666666555555542 35789999999532    11222333   4569


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      +++++|+|+++.   +.++....|..++..+...  ..++|+++|+||+|+...      .+.+..+....+ .+++++|
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~iS  308 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPIS  308 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEEe
Confidence            999999999864   5666666777776654221  226799999999998432      234445555555 7899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcC
Q 029929          159 AKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |+++.|+++++++|.+.+...+
T Consensus       309 A~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        309 ALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999887654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=4.8e-24  Score=163.69  Aligned_cols=164  Identities=22%  Similarity=0.191  Sum_probs=115.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc-
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG-   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-   74 (185)
                      ..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++.  .+.+|||||..          .+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4589999999999999999999988653 344566666666666666654  45799999952          222221 


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+++.+|++++|+|+++..+..... ++..+..       .++|+++|+||+|+.+........+++.........+++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  359 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR  359 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence            23568999999999999987776653 3333321       267999999999997532222222233322222334789


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +++||++|.|++++++.+.+.+....
T Consensus       360 ~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        360 VNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998776443

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=8.3e-24  Score=155.83  Aligned_cols=162  Identities=25%  Similarity=0.300  Sum_probs=109.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-ccc-------ccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~   76 (185)
                      .+.++|+++|.+|+|||||+++|.+..+.. ...+.++.......+..++  .++.||||||.... ..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999887642 2223333344444444443  57899999997432 211       123


Q ss_pred             hhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-CCcE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPY  154 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (185)
                      .+..+|++++|+|..+  ++.... .++..+..    .   +.|.++|+||+|+...     ...++.+.+.... ...+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~---~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i  193 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----L---NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL  193 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----c---CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence            4678999999999865  333332 23333321    1   4577899999998642     1334444444332 3689


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      +++||++|.|+++++++|.+.+++..+-+
T Consensus       194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~  222 (339)
T PRK15494        194 FPISALSGKNIDGLLEYITSKAKISPWLY  222 (339)
T ss_pred             EEEeccCccCHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999988776543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.3e-23  Score=156.70  Aligned_cols=167  Identities=17%  Similarity=0.063  Sum_probs=119.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-------cccccchhccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~   81 (185)
                      -.|.++|.+|||||||+|+|++.+......|.++.......+.+.+ ...++++||||...-       .......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3799999999999999999998876555567777666666666543 236889999995421       11222356889


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEe
Q 029929           82 DCCVLVYDVN---VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET  157 (185)
Q Consensus        82 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (185)
                      |++++|+|++   ..+.++....+..++......  ..+.|+++|+||+|+....   ...+.+..+....+. .+++++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~~~~~~Vi~I  313 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDEE---EAEERAKAIVEALGWEGPVYLI  313 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCChH---HHHHHHHHHHHHhCCCCCEEEE
Confidence            9999999998   455666666777766554221  1256999999999997531   223334444443332 379999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ||+++.|+++++++|.+.+....+
T Consensus       314 SA~tg~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        314 SAASGLGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             ECCCCcCHHHHHHHHHHHhhhCcc
Confidence            999999999999999999887644

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=1e-23  Score=139.82  Aligned_cols=146  Identities=24%  Similarity=0.296  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR   79 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~   79 (185)
                      ++|+++|++|+|||||++++++.... ....++.+.+.....+...  ...+++|||||......        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 2233444444444444443  45789999999654432        1234567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++|+|++++.+......+..          ..+.|+++|+||+|+......         . ......+++++||
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa  139 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA  139 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence            8999999999998777765433322          126799999999999864221         1 2223478999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKNA  176 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~  176 (185)
                      +++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.92  E-value=4e-24  Score=147.50  Aligned_cols=164  Identities=14%  Similarity=0.149  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCcceeeeEEEEEEE-------------------------C--C----
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQF-------------------------E--D----   54 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~----   54 (185)
                      ++|+++|+.|+|||||+.++.+...   ........+..........                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975521   1111111111111111110                         0  0    


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  134 (185)
                      ....+.||||||++.+...+...+..+|++++|+|+.++.........+..+. ...     ..|+++|+||+|+.....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCHHH
Confidence            12678999999999888888888889999999999987321111111122121 111     237899999999975322


Q ss_pred             eeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          135 RVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .....+.+.++....  ..++++++||++|+|+++++++|.+.++.
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            222234444444432  24789999999999999999999988765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.4e-24  Score=133.88  Aligned_cols=159  Identities=17%  Similarity=0.277  Sum_probs=125.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+.+|..++||||++..|.... +....||++.......+    .++.+.+||.+|++..+..|.+|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            46899999999999999999998776 34556777766554444    45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (185)
                      |+|..+.+..+++..-+..+   .........|++|.+||.|++..    ...+++..+.+-    ...+.+.++++.+|
T Consensus        91 V~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~A----~~pqei~d~leLe~~r~~~W~vqp~~a~~g  163 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPDA----MKPQEIQDKLELERIRDRNWYVQPSCALSG  163 (180)
T ss_pred             EEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCcccccc----cCHHHHHHHhccccccCCccEeeccccccc
Confidence            99999887777665444433   34444457799999999999865    455666555432    22477899999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 029929          163 FNVEAAFECIAKNAL  177 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~  177 (185)
                      +|+.+-+.||...+.
T Consensus       164 dgL~eglswlsnn~~  178 (180)
T KOG0071|consen  164 DGLKEGLSWLSNNLK  178 (180)
T ss_pred             hhHHHHHHHHHhhcc
Confidence            999999999988764

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.92  E-value=9.5e-24  Score=164.84  Aligned_cols=158  Identities=22%  Similarity=0.206  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      +.|+++|+.++|||||+++|++..   +.....++.+.+.....+...+  ..+.+||+||++.+...+..++..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999643   3334455666666655566554  78899999999999888888899999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcC---CCcEEEee
Q 029929           86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETS  158 (185)
Q Consensus        86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s  158 (185)
                      +|+|+++   +.+.+.+. +   + ..      .++| +++|+||+|+.+........+++..+....+   .++++++|
T Consensus        79 LVVDa~~G~~~qT~ehl~-i---l-~~------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS  147 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA-V---L-DL------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS  147 (581)
T ss_pred             EEEECCCCCcHHHHHHHH-H---H-HH------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence            9999997   34443332 1   1 11      1567 9999999999864322233445556555442   47999999


Q ss_pred             eccCCCHHHHHHHHHHHHhhc
Q 029929          159 AKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |++|.|+++++.+|...+...
T Consensus       148 A~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       148 AKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCCCCchhHHHHHHHHHHhC
Confidence            999999999999998776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=1.8e-23  Score=159.51  Aligned_cols=163  Identities=21%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-----------c
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~   74 (185)
                      ..++|+++|.+|+|||||++++++.... ....++++.+.....+..++  ..+.+|||||.......           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987643 33345555555555555544  36789999996443221           1


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCceeecHHHHHHHHHhcCCCc
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIP  153 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      ..+++.+|++|+|+|++++.+.... .++..+..       .+.|+++|+||+|+.. ..........+.......+.++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  320 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL-RIAGLILE-------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP  320 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc
Confidence            3467889999999999987665543 23332221       1579999999999982 1111111222222222234579


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          154 YFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ++++||++|.|+.++++++.+.+...
T Consensus       321 vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       321 IVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=1.9e-23  Score=158.53  Aligned_cols=167  Identities=19%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcc---cccchhcc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQS---LGVAFYRG   80 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~---~~~~~~~~   80 (185)
                      ...|+|+|.+|||||||+++|++........++++..+....+.+.+  ..+++||+||...    ...   .....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            35899999999999999999998765544556666666666666554  5789999999421    111   12234577


Q ss_pred             CcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929           81 ADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPS-------DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (185)
Q Consensus        81 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (185)
                      +|++|+|+|+++.    +.++.+..+..++..+....       ...+.|+++|+||+|+...  .. ..+.........
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e-l~e~l~~~l~~~  313 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RE-LAEFVRPELEAR  313 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HH-HHHHHHHHHHHc
Confidence            9999999999853    34444444555554433210       1236799999999999753  11 122233333334


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      + ++++++||+++.|+++++.+|.+.+...+
T Consensus       314 g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        314 G-WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             C-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            4 79999999999999999999999886543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.92  E-value=2.4e-24  Score=147.06  Aligned_cols=162  Identities=20%  Similarity=0.200  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------ccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   68 (185)
                      ..++|+++|+.++|||||+++|........                  .....+.......+........++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            458999999999999999999985442211                  11122223323333212556789999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHH-HHHH
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA  147 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~  147 (185)
                      .+.......+..+|++|+|+|+.+...... ...+..+...       ++|+++++||+|+.... .....+++. .+.+
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence            999888888999999999999987533322 2222222221       77999999999998321 222223333 3333


Q ss_pred             hcC-----CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          148 SKG-----NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       148 ~~~-----~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ...     .++++++||.+|.|+.++++.|.+.+|
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            332     368999999999999999999998876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=147.29  Aligned_cols=164  Identities=20%  Similarity=0.114  Sum_probs=114.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccchh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFY   78 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~   78 (185)
                      .--|+++|.||+|||||+|++.+.+.. .+..+.++.......+..+  ..++.|+||||-.        .+.......+
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            357899999999999999999999876 3344444444434444333  5799999999922        2233345567


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..+|+++||+|++.+-.... ...+..+..       .+.|+++++||+|.....  ..............+...++++|
T Consensus        84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             ccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence            89999999999997332221 222233321       257999999999988752  21233344444445567899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          159 AKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      |++|.|++.+.+.+...+++..+-+
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~y  178 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYY  178 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999998876543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=7.2e-24  Score=143.25  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=104.5

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh----ccc---ccchhccCcEEE
Q 029929           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV   85 (185)
Q Consensus        13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~---~~~~~~~~d~~i   85 (185)
                      ++|++|+|||||++++.+........+.++.+.....+.+.+ ...+.+|||||....    ...   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998865322233333444444444441 457889999996321    112   233467899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           86 LVYDVNVM------KSFDNLNNWREEFLIQASP---SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +|+|+.+.      .+++....+...+......   ....+.|+++|+||+|+....  ............ ....++++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~-~~~~~~~~  156 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVRELAL-EEGAEVVP  156 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHHhc-CCCCCEEE
Confidence            99999987      4677666666665433211   001267999999999997542  111111122222 23478999


Q ss_pred             eeeccCCCHHHHHHHHHHH
Q 029929          157 TSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~  175 (185)
                      +||+++.|++++++++...
T Consensus       157 ~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         157 ISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EehhhhcCHHHHHHHHHhh
Confidence            9999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK00089 era GTPase Era; Reviewed

Probab=99.92  E-value=3.6e-23  Score=150.41  Aligned_cols=162  Identities=20%  Similarity=0.142  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFY   78 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~   78 (185)
                      .-.|+++|++|||||||+|++++.+.... ..+.++..........  ...++.++||||.....        ......+
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            35689999999999999999998876422 2232222222222222  23689999999953321        2233456


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..+|++++|+|+++..+.. ...+...+.    .   .+.|+++|+||+|+...  ..........+....+..+++++|
T Consensus        83 ~~~D~il~vvd~~~~~~~~-~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iS  152 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGPG-DEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPIS  152 (292)
T ss_pred             hcCCEEEEEEeCCCCCChh-HHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEec
Confidence            8899999999998732211 122222221    1   15799999999999743  222333444444444557899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcCC
Q 029929          159 AKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      |+++.|+++++++|.+.+++..+
T Consensus       153 A~~~~gv~~L~~~L~~~l~~~~~  175 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLPEGPP  175 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999999876553

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.92  E-value=3.8e-23  Score=161.62  Aligned_cols=161  Identities=18%  Similarity=0.227  Sum_probs=114.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccC------cceeeeEEEE--EEE---CCcEEEEEEecCCChhh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQER   69 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~-------~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~   69 (185)
                      ..+++++|+.++|||||+++|+....       ...+..      ..+.++....  +.+   ++..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            46899999999999999999986421       111111      1233333222  222   45668999999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (185)
                      +...+..+++.+|++|+|+|+++..+......|.....        .+.|+++|+||+|+....    ..+...++....
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~----~~~~~~el~~~l  150 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD----PERVKKEIEEVI  150 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC----HHHHHHHHHHHh
Confidence            99999999999999999999998766665555544331        167999999999987532    111222333333


Q ss_pred             C--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          150 G--NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       150 ~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +  ...++++||++|.|+++++++|.+.++...
T Consensus       151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       151 GLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             CCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            3  135899999999999999999999887543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=1.9e-23  Score=158.99  Aligned_cols=149  Identities=26%  Similarity=0.318  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   77 (185)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||.......        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999987642 34456666666666666654  56889999997643322        2235


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +..+|++++|+|++++.+++....|..          ..+.|+++|+||+|+.....  ..         .....+++++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~~--~~---------~~~~~~~i~i  350 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEID--LE---------EENGKPVIRI  350 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccch--hh---------hccCCceEEE
Confidence            788999999999999877765433322          22679999999999975321  11         1223689999


Q ss_pred             eeccCCCHHHHHHHHHHHHhh
Q 029929          158 SAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ||++|.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998864

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.5e-25  Score=140.90  Aligned_cols=161  Identities=26%  Similarity=0.332  Sum_probs=120.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC---C----CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      .+.|+++|..+||||||+.++-....   .    ....++.+.......+  .  ...+.|||.+|++..+++|..|+..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHHH
Confidence            47899999999999999988753221   1    2233444444333333  2  4588999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH---h--cCCCcEE
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---S--KGNIPYF  155 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~--~~~~~~~  155 (185)
                      +|++|+++|+++++.++.....++.+..+   ....+.|+++.+||.|+.+.-    ...++.....   .  ....++.
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~---E~leg~p~L~lankqd~q~~~----~~~El~~~~~~~e~~~~rd~~~~  165 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVEN---EKLEGAPVLVLANKQDLQNAM----EAAELDGVFGLAELIPRRDNPFQ  165 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHH---HHhcCCchhhhcchhhhhhhh----hHHHHHHHhhhhhhcCCccCccc
Confidence            99999999999999998876655554433   223388999999999998752    2223322222   1  2357899


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhc
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ++||.+|+|+++.+.|++..+.++
T Consensus       166 pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  166 PVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cchhhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999999999887

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.91  E-value=3.8e-23  Score=142.16  Aligned_cols=161  Identities=22%  Similarity=0.149  Sum_probs=105.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh----------hhhccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~   75 (185)
                      ...++|+++|.+|+|||||++++++..+.....++.+.+........   ...+.+|||||.          ..+.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            35589999999999999999999987644333444443333332222   257899999994          23333334


Q ss_pred             chhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           76 AFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        76 ~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      .+++.   .+++++|+|.+.+.+.... .+...+.    .   .+.|+++++||+|+.+....+...+.+....... ..
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~  169 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----E---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DD  169 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH----H---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CC
Confidence            44443   4678889998875443321 1112121    1   1678999999999976533333334444444443 37


Q ss_pred             cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          153 PYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++++||+++.|++++++.|.+.+.+
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            89999999999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.91  E-value=1.9e-23  Score=141.65  Aligned_cols=151  Identities=21%  Similarity=0.165  Sum_probs=99.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG   74 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~   74 (185)
                      +...++|+++|.+|+|||||++++++..+.....++.+.+.....+..++   .+.+|||||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35678999999999999999999998764333334444333333333332   68899999942          223333


Q ss_pred             cchhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929           75 VAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (185)
Q Consensus        75 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  150 (185)
                      ..+++   .+|++++|+|++++-+.... .++..+..       .+.|+++++||+|+..........++++......+ 
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~  163 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD  163 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence            34444   36899999999875444433 22222221       16799999999999764333344555555555443 


Q ss_pred             CCcEEEeeeccCCCHH
Q 029929          151 NIPYFETSAKEGFNVE  166 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~  166 (185)
                      .++++++||++|+|++
T Consensus       164 ~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       164 DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCceEEEECCCCCCCC
Confidence            3589999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=7.5e-23  Score=155.03  Aligned_cols=152  Identities=20%  Similarity=0.270  Sum_probs=110.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   77 (185)
                      ..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987542 33456666666666666654  46789999997544322        2356


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++++|+|++++.+++..  |+..+..       .+.|+++|+||+|+...        ....+....+ .+++.+
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~v  341 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSNL  341 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEEE
Confidence            7899999999999998777654  4444321       26799999999999643        1122333343 688999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhc
Q 029929          158 SAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |+++ .|++++++.|.+.+...
T Consensus       342 Sak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       342 SAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EEec-CCHHHHHHHHHHHHHHH
Confidence            9998 68999998888877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.91  E-value=7.3e-23  Score=159.38  Aligned_cols=156  Identities=23%  Similarity=0.234  Sum_probs=111.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .++.+|+++|+.++|||||++++.+..+.....++.+.+.....+...+. ..++||||||+..|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            45689999999999999999999988776655555555555555554432 27899999999999998888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-------c-CCCcEEEe
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-------K-GNIPYFET  157 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~  157 (185)
                      +|+|+++.........+ ...    .   ..++|+++++||+|+.+..     .+........       . +..+++++
T Consensus       164 LVVda~dgv~~qT~e~i-~~~----~---~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHA----K---AANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHH----H---HcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            99999873322222111 111    1   1267999999999997532     1222222211       1 13579999


Q ss_pred             eeccCCCHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~  175 (185)
                      ||++|+|+.+++++|...
T Consensus       231 SAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       231 SALTGDGIDELLDMILLQ  248 (587)
T ss_pred             ECCCCCChHHHHHhhhhh
Confidence            999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=3.2e-23  Score=137.53  Aligned_cols=147  Identities=20%  Similarity=0.169  Sum_probs=99.4

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhccCc
Q 029929           12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD   82 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d   82 (185)
                      +++|.+|+|||||++++++.... ....+..+.+.........+  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999987532 12233333344344444433  6789999999766433        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      ++++|+|+.+..+.... .+...+..    .   +.|+++|+||+|+.+....       .......+..+++++|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~---~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~  143 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK----S---KKPVILVVNKVDNIKEEDE-------AAEFYSLGFGEPIPISAEHG  143 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh----c---CCCEEEEEECcccCChHHH-------HHHHHhcCCCCeEEEecccC
Confidence            99999999875444332 12222211    1   5799999999999764211       12223344347899999999


Q ss_pred             CCHHHHHHHHHHH
Q 029929          163 FNVEAAFECIAKN  175 (185)
Q Consensus       163 ~~i~~~~~~i~~~  175 (185)
                      .|+++++++|.+.
T Consensus       144 ~gv~~l~~~l~~~  156 (157)
T cd01894         144 RGIGDLLDAILEL  156 (157)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=5.1e-23  Score=155.13  Aligned_cols=159  Identities=17%  Similarity=0.174  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh--cccc------cchhc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLG------VAFYR   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~------~~~~~   79 (185)
                      .++|+++|.+|||||||+|+|++........++.+.+.....+...+. ..+.+|||+|....  ...+      ...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987765444556666666666665543 26789999996321  1111      23357


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc-EEEee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETS  158 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s  158 (185)
                      .+|++++|+|++++.+.+.+..+...+....    ..+.|+++|+||+|+....  .   .....  ...+ .+ ++++|
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~----~~~~pvIiV~NKiDL~~~~--~---~~~~~--~~~~-~~~~v~IS  343 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEID----AHEIPTLLVMNKIDMLDDF--E---PRIDR--DEEN-KPIRVWLS  343 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccCCCch--h---HHHHH--HhcC-CCceEEEe
Confidence            8999999999999887777654444333221    1267999999999997431  1   01111  1122 34 58899


Q ss_pred             eccCCCHHHHHHHHHHHHhhc
Q 029929          159 AKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |++|.|+++++++|.+.+...
T Consensus       344 AktG~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        344 AQTGAGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCCCCCHHHHHHHHHHHhhhc
Confidence            999999999999999988643

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=4.5e-23  Score=130.84  Aligned_cols=117  Identities=32%  Similarity=0.512  Sum_probs=86.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ||+|+|++|||||||+++|++....  ....+..+.+..............+.+||++|++.+.......+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876  22333444455555556666666799999999988888777779999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      ||++++++++.+..++..+......  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            9999999999875553333322211  12589999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01895 EngA2 EngA2 subfamily

Probab=99.91  E-value=9.1e-23  Score=137.38  Aligned_cols=158  Identities=23%  Similarity=0.219  Sum_probs=102.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-----------cccc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----------SLGV   75 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~   75 (185)
                      +++|+++|.+|+|||||++++++.... ....++.+.......+..++  ..+.+|||||.....           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999987633 22233333333334444443  357799999954321           0112


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--eeecHHHHHHHHHhcCCCc
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--RVVSEKKAKAWCASKGNIP  153 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~  153 (185)
                      ..+..+|++++|+|++++.+.... .+.....    .   .+.|+++++||+|+.....  .....+.+..........+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLIL----E---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP  151 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH----h---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence            345789999999999987665443 2222221    1   1569999999999976421  1111112222111122478


Q ss_pred             EEEeeeccCCCHHHHHHHHHHH
Q 029929          154 YFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ++++||+++.|+.++++++.+.
T Consensus       152 ~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         152 IVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eEEEeccCCCCHHHHHHHHHHh
Confidence            9999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=9.6e-23  Score=156.56  Aligned_cols=155  Identities=21%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~   77 (185)
                      ...+|+++|.+|+|||||++++++.... ....++.+.+.........+  ..+.+|||||...        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            3479999999999999999999987643 33455555555555555544  4578999999652        23334557


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++|+|+|+++..+... ..+...+..       .++|+++|+||+|+....     .+....+  ..+....+++
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~--~~g~~~~~~i  179 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALW--SLGLGEPHPV  179 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHH--hcCCCCeEEE
Confidence            789999999999998755433 233333321       267999999999986421     1111122  2232345799


Q ss_pred             eeccCCCHHHHHHHHHHHHhh
Q 029929          158 SAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ||++|.|+.+++++|.+.+++
T Consensus       180 SA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        180 SALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EcCCCCCcHHHHHHHHhhccc
Confidence            999999999999999998866

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=4.6e-23  Score=136.82  Aligned_cols=143  Identities=20%  Similarity=0.234  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----hhcccccchhccCcEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV   85 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i   85 (185)
                      +|+++|.+|+|||||++++.+.....  ..+.       ...+...    .+|||||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999988654211  1111       1122222    269999962    22222233468999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCC
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFN  164 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  164 (185)
                      +|+|+++.+++..  .++..+   .     .+.|+++++||+|+.+.     ..+.+.+++...+. .|++++||++|+|
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g  134 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS  134 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence            9999998766532  222221   1     15689999999998642     23455566655553 5999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      ++++++++.+.+.+..
T Consensus       135 i~~l~~~l~~~~~~~~  150 (158)
T PRK15467        135 VQQLVDYLASLTKQEE  150 (158)
T ss_pred             HHHHHHHHHHhchhhh
Confidence            9999999988876554

>cd04163 Era Era subfamily

Probab=99.91  E-value=1.9e-22  Score=134.85  Aligned_cols=157  Identities=20%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchhc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~   79 (185)
                      ..+|+++|++|+|||||++++.+...........+.. .............+.+|||||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999876532211111111 11112223334678899999954322        22344578


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++|+|+.++.+.. ...+...+...       +.|+++|+||+|+...  .....+....+....+..+++++|+
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence            899999999999862211 12222323211       5699999999999743  2233333444444444578999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKN  175 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~  175 (185)
                      +++.|+++++++|.+.
T Consensus       152 ~~~~~~~~l~~~l~~~  167 (168)
T cd04163         152 LKGENVDELLEEIVKY  167 (168)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.91  E-value=6.2e-23  Score=162.11  Aligned_cols=162  Identities=22%  Similarity=0.280  Sum_probs=112.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee--EEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      .++..|+++|+.++|||||+++|....+.....++.+.+.  ....+...+....++||||||+..|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4668999999999999999999998776654444444332  22233333456789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH---HHhc-CCCcEEEeee
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSA  159 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~  159 (185)
                      +|+|+|+++.........+ ..+    .   ..++|+++++||+|+...... ...+.+..+   .... +.++++++||
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~----k---~~~iPiIVViNKiDl~~~~~e-~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYI----Q---AANVPIIVAINKIDKANANTE-RIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHH----H---hcCceEEEEEECCCccccCHH-HHHHHHHHhccchHhhCCCceEEEEEC
Confidence            9999999874322222211 111    1   126799999999999753211 111111111   1111 2378999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKNA  176 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~  176 (185)
                      ++|.|+.+++++|....
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999998754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.90  E-value=9.2e-23  Score=162.40  Aligned_cols=160  Identities=21%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ..++..|+++|+.++|||||+++|....+.....++.+.+.....+.+.  +..++||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            3567899999999999999999999877665545555444444444444  36789999999999999988889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH---HHHhc-CCCcEEEeeec
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA---WCASK-GNIPYFETSAK  160 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~s~~  160 (185)
                      |+|+|+++.........+ ...    .   ..++|+++++||+|+...+.... ..++..   +.... +.++++++||+
T Consensus       365 ILVVdAddGv~~qT~e~i-~~a----~---~~~vPiIVviNKiDl~~a~~e~V-~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI-NHA----K---AAGVPIIVAINKIDKPGANPDRV-KQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEECCCCCCHhHHHHH-HHH----H---hcCCcEEEEEECccccccCHHHH-HHHHHHhcccHHHhCCCceEEEEeCC
Confidence            999999873222221111 111    1   12679999999999975321111 111111   11111 24789999999


Q ss_pred             cCCCHHHHHHHHHHH
Q 029929          161 EGFNVEAAFECIAKN  175 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~  175 (185)
                      +|.|+.+++++|...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998753

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=2.2e-22  Score=138.73  Aligned_cols=163  Identities=18%  Similarity=0.273  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccC-cEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY   88 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~   88 (185)
                      +|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765443322 2222222221123456789999999999988888889998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH----HHHh---------------
Q 029929           89 DVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA----WCAS---------------  148 (185)
Q Consensus        89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~---------------  148 (185)
                      |+.+. .++..+..++..+...... ...++|+++++||+|+..........+.+.+    +...               
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~  159 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK  159 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            99986 6676666665555433221 1237899999999998764322211221111    1100               


Q ss_pred             ----------------cCCCcEEEeeeccCC-CHHHHHHHHHH
Q 029929          149 ----------------KGNIPYFETSAKEGF-NVEAAFECIAK  174 (185)
Q Consensus       149 ----------------~~~~~~~~~s~~~~~-~i~~~~~~i~~  174 (185)
                                      ...+.++++|++.+. |++.+.+||.+
T Consensus       160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                            012457788888776 69999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7e-22  Score=150.99  Aligned_cols=162  Identities=22%  Similarity=0.174  Sum_probs=109.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----------cc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LG   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~   74 (185)
                      ..++|+++|.+|+|||||++++++.... ....++++.+.....+...+  ..+.+|||||......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4699999999999999999999976532 34445555555444444443  4678999999532211           11


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+++.+|++|+|+|++++.+.... .+...+..       .+.|+++++||+|+..........+.+.........+++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i  321 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI  321 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence            2356889999999999987665543 22232221       157999999999998432222222233333333345899


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhh
Q 029929          155 FETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++||++|.|+.++++.+.+....
T Consensus       322 ~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        322 VFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998876653

>cd00880 Era_like Era (E

Probab=99.89  E-value=3.9e-22  Score=132.34  Aligned_cols=154  Identities=17%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-------cccchhccCcEE
Q 029929           13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC   84 (185)
Q Consensus        13 viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~~   84 (185)
                      ++|++|+|||||++++++.... .......+............ ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 33333333333333333221 45889999999665443       333467899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|+++........ +......       .+.|+++|+||+|+..........+............+++++|++++.|
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  151 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG  151 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence            9999999877666543 2222211       2679999999999986432221111112222333458999999999999


Q ss_pred             HHHHHHHHHHH
Q 029929          165 VEAAFECIAKN  175 (185)
Q Consensus       165 i~~~~~~i~~~  175 (185)
                      ++++++++.+.
T Consensus       152 v~~l~~~l~~~  162 (163)
T cd00880         152 IDELREALIEA  162 (163)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.89  E-value=5.3e-22  Score=154.40  Aligned_cols=158  Identities=23%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~~   70 (185)
                      ++.-|+++|++++|||||+++|.+..+......+.+.+.....+..+                .....+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            34579999999999999999999887654322222221111111111                01124889999999999


Q ss_pred             cccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----------e
Q 029929           71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----------V  137 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----------~  137 (185)
                      ..++..+++.+|++++|+|+++   +.+++.+..    +.    .   .++|+++++||+|+.......          .
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~----~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak  151 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR----M---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK  151 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH----H---cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence            9998889999999999999987   444443321    11    1   167999999999997421000          0


Q ss_pred             cHH----H--------HHHHHH-------------hcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          138 SEK----K--------AKAWCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       138 ~~~----~--------~~~~~~-------------~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ...    .        ..++..             ..+..+++++||++|+|+++++.+|...
T Consensus       152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            000    0        011111             1234789999999999999999988753

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=6.7e-22  Score=158.33  Aligned_cols=163  Identities=21%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hccc-c
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~   74 (185)
                      ..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++.  .+.+|||||...          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999988743 334455556665556666654  456899999532          1111 1


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+++.+|++++|+|+++..+..... ++..+..       .++|+++|+||+|+.+....+.....+..........++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence            23467899999999999877766543 3333322       167999999999997642211112222222122334688


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +++||++|.|++++++.+.+.+.+.
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999988764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.89  E-value=1.1e-21  Score=153.71  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=111.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------CccCcceeeeEEEEEEE---CCcEEEEEEecCCChh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE   68 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~   68 (185)
                      +..+++++|+.++|||||+.+|+.....  .             ....+.+.......+.+   ++..+.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            4569999999999999999999763211  0             00112222221222222   4557899999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS  148 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (185)
                      ++...+..+++.+|++|+|+|+++.........|.....        .+.|+++|+||+|+.....    .....++...
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~----~~v~~ei~~~  153 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAADP----ERVKQEIEDV  153 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccH----HHHHHHHHHH
Confidence            999889999999999999999998655554444433221        1679999999999865321    1112222222


Q ss_pred             cC--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       149 ~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .+  ...++++||++|.|+.+++++|.+.++...
T Consensus       154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             hCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            22  135899999999999999999999887543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.89  E-value=3.6e-22  Score=127.51  Aligned_cols=136  Identities=25%  Similarity=0.356  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----hhhhcccccchhccCcEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV   85 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i   85 (185)
                      ||+++|+.|||||||+++|.+.....  ..|....       +     .=.++||||    ...+..........+|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCc--CccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            79999999999999999999876432  2222111       1     113479999    3444444455557899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|.|++++.+... ..+...+          +.|+|-|+||+|+...   ....+..+++...-+.-.+|++|+.+|+|+
T Consensus        69 ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi  134 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI  134 (143)
T ss_pred             EEecCCCCCccCC-chhhccc----------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence            9999998654321 2222222          5699999999999842   245667777777777678899999999999


Q ss_pred             HHHHHHHH
Q 029929          166 EAAFECIA  173 (185)
Q Consensus       166 ~~~~~~i~  173 (185)
                      +++.++|.
T Consensus       135 ~eL~~~L~  142 (143)
T PF10662_consen  135 EELKDYLE  142 (143)
T ss_pred             HHHHHHHh
Confidence            99999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.89  E-value=1.5e-21  Score=130.77  Aligned_cols=153  Identities=24%  Similarity=0.251  Sum_probs=100.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hcccccchhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR   79 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~   79 (185)
                      .|+++|.+|+|||||++++.+........++.+.+.....+..+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            479999999999999999996555444444444444443443333   888999999432          2233333333


Q ss_pred             ---cCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH-hcCCCc
Q 029929           80 ---GADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIP  153 (185)
Q Consensus        80 ---~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  153 (185)
                         ..+++++++|.....+..  .+..|+...          +.|+++++||+|+.................. .....+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP  147 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence               457889999998653222  223333322          4699999999999754323333333333333 234478


Q ss_pred             EEEeeeccCCCHHHHHHHHHHH
Q 029929          154 YFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ++++|++++.|+.+++++|.+.
T Consensus       148 ~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         148 IILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             eEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2.1e-21  Score=148.36  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccchhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR   79 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~   79 (185)
                      ++|+++|.+|+|||||+++|.+.... ....++.+.+.......+.+  ..+.+|||||+..        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23345555555555555555  6789999999765        2233445678


Q ss_pred             cCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           80 GADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      .+|++++|+|+.++.+...  +..|+...          +.|+++|+||+|+...      .....++ ...+...++++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i  142 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI  142 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence            9999999999987544332  22232221          6799999999996542      1222222 23443358999


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||++|.|+.++++++.+..
T Consensus       143 Sa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        143 SAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EeeCCCCHHHHHHHHHhhC
Confidence            9999999999999998743

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.88  E-value=2.1e-21  Score=132.61  Aligned_cols=150  Identities=18%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSN--------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      .++|+++|+.++|||||+++|+......              ......+.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4799999999999999999997531000              00012223333344445555678899999999988888


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhcC-
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASKG-  150 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-  150 (185)
                      ....+..+|++++|+|+........ ...+..+...       ++| +++++||+|+..... .+...+++..+....+ 
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~  153 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF  153 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            8888899999999999986422221 2222222211       456 778999999974321 1223345555555443 


Q ss_pred             ---CCcEEEeeeccCCCH
Q 029929          151 ---NIPYFETSAKEGFNV  165 (185)
Q Consensus       151 ---~~~~~~~s~~~~~~i  165 (185)
                         .++++++||.+|.++
T Consensus       154 ~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         154 DGDNTPIVRGSALKALEG  171 (195)
T ss_pred             cccCCeEEEeeCccccCC
Confidence               478999999999975

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.88  E-value=1.6e-22  Score=126.07  Aligned_cols=165  Identities=21%  Similarity=0.292  Sum_probs=122.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ++.++|+++|-.++|||||+..|.+.+.. ...||.+..  .+.+.++ ..+.+++||.+|+...+..|..|+...|.+|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            56799999999999999999999887743 445555544  4444444 4579999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ||+|.++..-|+++..-+-++.+   ......+|+.|..||.|+....+.+.....+.-.......+.+-.||+..++|+
T Consensus        91 yVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence            99999998888877655555543   333447899999999998754222111111111111222478899999999999


Q ss_pred             HHHHHHHHHHHh
Q 029929          166 EAAFECIAKNAL  177 (185)
Q Consensus       166 ~~~~~~i~~~~~  177 (185)
                      .+-.+|+.....
T Consensus       168 ~dg~~wv~sn~~  179 (185)
T KOG0074|consen  168 TDGSDWVQSNPE  179 (185)
T ss_pred             cCcchhhhcCCC
Confidence            999999876544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=4.2e-21  Score=146.53  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh--------hhhcccccchhcc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG   80 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~   80 (185)
                      +|+++|.+|+|||||+|+|++.... ....++.+.+.........+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23345555555555555544  46899999995        3344455667789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++++|+|+.+..+... ..+...+.+       .++|+++|+||+|+.....   .   ... ....+..+++++||.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~-------~~~piilVvNK~D~~~~~~---~---~~~-~~~lg~~~~~~vSa~  143 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK-------SGKPVILVANKIDGKKEDA---V---AAE-FYSLGFGEPIPISAE  143 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH-------hCCCEEEEEECccCCcccc---c---HHH-HHhcCCCCeEEEeCC
Confidence            999999999987543332 122222221       1679999999999875421   1   112 234454589999999


Q ss_pred             cCCCHHHHHHHHHHHHhhc
Q 029929          161 EGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (185)
                      +|.|+.++++++.+.+...
T Consensus       144 ~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       144 HGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             cCCChHHHHHHHHHhcCcc
Confidence            9999999999999888654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.88  E-value=1.7e-21  Score=146.90  Aligned_cols=170  Identities=16%  Similarity=0.136  Sum_probs=108.8

Q ss_pred             CccccceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEEEE------------------C--C----
Q 029929            2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQF------------------E--D----   54 (185)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----   54 (185)
                      =+++...++|+++|+.++|||||+.+|.+....   .......+..........                  +  +    
T Consensus         3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            345667799999999999999999999653211   111222222221111110                  0  0    


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  133 (185)
                      ....+++|||||+..+..........+|++++|+|+.++. ...... .+..+. ...     ..|+++|+||+|+.+..
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~-~~~-----i~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALD-IIG-----IKNIVIVQNKIDLVSKE  155 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHH-HcC-----CCcEEEEEEeeccccch
Confidence            1357899999999988777666677889999999999643 111111 112111 111     23689999999998643


Q ss_pred             ceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          134 SRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       134 ~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ......+++..+....  ...+++++||++|.|+++++++|...++.
T Consensus       156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            2222234444444322  24789999999999999999999987764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.88  E-value=1.3e-21  Score=147.73  Aligned_cols=167  Identities=17%  Similarity=0.138  Sum_probs=107.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEE--------------EEE----CC------cEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE--------------VQF----ED------RLFT   58 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~   58 (185)
                      +..++|+++|+.++|||||+++|.+....   .......+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999754221   111111111111000              000    11      1357


Q ss_pred             EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS  138 (185)
Q Consensus        59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  138 (185)
                      +++||+||++.+...+......+|++++|+|+++..........+..+ ....     ..|+++++||+|+.+.......
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence            899999999999888888888999999999999643111111222222 1111     2368999999999864222222


Q ss_pred             HHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .+++..+....  ..++++++||++|+|+++++++|...++.
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            34444444432  24789999999999999999999987663

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.88  E-value=4.3e-21  Score=150.52  Aligned_cols=158  Identities=22%  Similarity=0.193  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      -|.++|+.++|||||+++|++..   .......+++.+.....+...+ +..+.+||+||++.+.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            47899999999999999998643   2233334555444433333322 3457899999999998888888899999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcC--CCcEEEeeec
Q 029929           87 VYDVNVM---KSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--NIPYFETSAK  160 (185)
Q Consensus        87 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~  160 (185)
                      |+|+++.   .+.+.+    ..+ ...      ++| +++|+||+|+.+........+++..+....+  ..+++++||+
T Consensus        81 VVda~eg~~~qT~ehl----~il-~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~  149 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AIL-QLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT  149 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHH-HHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence            9999873   333322    111 111      345 5799999999764323333445555554433  3789999999


Q ss_pred             cCCCHHHHHHHHHHHHhhc
Q 029929          161 EGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (185)
                      +|.|++++++.|.+...+.
T Consensus       150 tG~gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        150 EGRGIDALREHLLQLPERE  168 (614)
T ss_pred             CCCCCHHHHHHHHHhhccc
Confidence            9999999999998765543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.88  E-value=7.7e-21  Score=152.08  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=109.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc----------ccch
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF   77 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~   77 (185)
                      .++|+++|.+|||||||+|++++........++.+.+.....  +...+..+.++||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            478999999999999999999987765444455554443333  3445568899999997665421          1122


Q ss_pred             h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           78 Y--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      +  ..+|++++|+|+++.+..   ..+..++.+.       ++|+++++||+|+.+...   ...+..++.+..+ ++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~-------giPvIvVlNK~Dl~~~~~---i~id~~~L~~~LG-~pVv  146 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL-------GIPCIVALNMLDIAEKQN---IRIDIDALSARLG-CPVI  146 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc-------CCCEEEEEEchhhhhccC---cHHHHHHHHHHhC-CCEE
Confidence            2  479999999999975432   2233333321       679999999999875421   2344556666666 8999


Q ss_pred             EeeeccCCCHHHHHHHHHHHHh
Q 029929          156 ETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ++|+.+++|++++++.+.+...
T Consensus       147 piSA~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhhh
Confidence            9999999999999999987653

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-20  Score=118.47  Aligned_cols=168  Identities=25%  Similarity=0.343  Sum_probs=131.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-cccccchhccCc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGAD   82 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~d   82 (185)
                      .+.-+|+|.|..++|||++++.+.-....  ....+|++..+....-+-.+..-.+.++||.|.... ..+-.+|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            34579999999999999999998754433  445666654443333333344457899999996555 556678889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      ++++||+..+++||..+.-+-..+.+.   .+...+|+++++||+|+.+.  ++...+.+..++.+.. +..+++++.+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~---KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~dR  160 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKH---KDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMDR  160 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhc---cccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEeccc
Confidence            999999999999999887666666543   34447899999999999865  7778888888888776 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      ..+-+.|..+...+...
T Consensus       161 ~sL~epf~~l~~rl~~p  177 (198)
T KOG3883|consen  161 PSLYEPFTYLASRLHQP  177 (198)
T ss_pred             hhhhhHHHHHHHhccCC
Confidence            99999999998877644

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.88  E-value=3.1e-21  Score=151.00  Aligned_cols=146  Identities=19%  Similarity=0.243  Sum_probs=105.8

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh--ccCcEEEE
Q 029929           15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL   86 (185)
Q Consensus        15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~   86 (185)
                      |.+|+|||||+|++++........++.+.+.....+.+++  ..+++|||||+.++...      ...++  +.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876666667777766666666654  45789999998766543      22232  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|+++.+..   ..+..++.+       .+.|+++|+||+|+.+...  . ..+.+.+.+..+ .+++++||++|+|++
T Consensus        79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~~--i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~  144 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKKG--I-RIDEEKLEERLG-VPVVPTSATEGRGIE  144 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhCC--C-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence            9999874322   222222221       1679999999999875421  2 234455566666 899999999999999


Q ss_pred             HHHHHHHHHH
Q 029929          167 AAFECIAKNA  176 (185)
Q Consensus       167 ~~~~~i~~~~  176 (185)
                      ++++++.+..
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=5.1e-21  Score=141.25  Aligned_cols=152  Identities=19%  Similarity=0.204  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh---------cccccchh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY   78 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~   78 (185)
                      ..|+++|.||+|||||+|+|++.... ....|+++.+..+......+.  .+.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998765 456777777777777776664  4788999994421         22334556


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..||++|||+|+...-+.+. ......+.    .   .++|+++|+||+|-...      .....++ .+++.-.++++|
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr----~---~~kpviLvvNK~D~~~~------e~~~~ef-yslG~g~~~~IS  146 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILR----R---SKKPVILVVNKIDNLKA------EELAYEF-YSLGFGEPVPIS  146 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHH----h---cCCCEEEEEEcccCchh------hhhHHHH-HhcCCCCceEee
Confidence            88999999999987433332 11222221    1   16799999999996522      2233333 345557899999


Q ss_pred             eccCCCHHHHHHHHHHHHh
Q 029929          159 AKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~  177 (185)
                      |..|.|+.++++.+.+.++
T Consensus       147 A~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         147 AEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             hhhccCHHHHHHHHHhhcC
Confidence            9999999999999999984

>PRK10218 GTP-binding protein; Provisional

Probab=99.87  E-value=1.5e-20  Score=146.77  Aligned_cols=165  Identities=18%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   72 (185)
                      ...+|+++|+.++|||||+++|+..  .+...            .....+.+.......+....+.+++|||||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3569999999999999999999863  22211            122344555555556666678999999999999999


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----  148 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----  148 (185)
                      .+..+++.+|++|+|+|+.+...... ..++.....       .++|.++++||+|+....... ..+++..+...    
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-------~gip~IVviNKiD~~~a~~~~-vl~ei~~l~~~l~~~  154 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-------YGLKPIVVINKVDRPGARPDW-VVDQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-------cCCCEEEEEECcCCCCCchhH-HHHHHHHHHhccCcc
Confidence            99999999999999999987432222 222232221       167999999999987543222 23333333322    


Q ss_pred             --cCCCcEEEeeeccCC----------CHHHHHHHHHHHHhhcC
Q 029929          149 --KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNE  180 (185)
Q Consensus       149 --~~~~~~~~~s~~~~~----------~i~~~~~~i~~~~~~~~  180 (185)
                        ...+|++++||.+|.          |+..+++.|...++...
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence              123789999999998          68999999999887553

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.87  E-value=3.5e-21  Score=146.47  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=100.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------------------------CccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-------------------------------QYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++++|||||+++|+......                               ...++++.+..  ...+..
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~--~~~~~~   81 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLA--HKKFET   81 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceee--eEEEec
Confidence            456899999999999999999998432110                               11233333333  334445


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  133 (185)
                      ..+.+.+|||||+..+.......+..+|++++|+|++++..... ....+... ....     ..|+++++||+|+....
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~-----~~~iivviNK~Dl~~~~  155 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG-----INQLIVAINKMDAVNYD  155 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC-----CCeEEEEEEcccccccc
Confidence            56789999999998887666666789999999999987311111 11111211 1111     23689999999997532


Q ss_pred             c--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          134 S--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                      .  .....+++..+....+    .++++++||++|+|+.+
T Consensus       156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence            1  1223345555554443    36799999999999986

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.87  E-value=2.5e-20  Score=124.21  Aligned_cols=160  Identities=20%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~   75 (185)
                      ....-|+++|..|+|||||||+|++++-..-...+.|.+.....+.+++.   +.++|.||          .+.+..+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            34578999999999999999999997743334455555666667766653   67889999          344555566


Q ss_pred             chhcc---CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929           76 AFYRG---ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG  150 (185)
Q Consensus        76 ~~~~~---~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (185)
                      .|++.   -.++++++|+.++..-..  +-.|+.+.          ++|+++++||+|.....++...............
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            66643   568889999988544322  22333322          7899999999999876444333344443322222


Q ss_pred             CCc--EEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          151 NIP--YFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       151 ~~~--~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .+.  ++..|+..+.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            233  8899999999999999999887754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.87  E-value=9.9e-21  Score=133.12  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------c---cCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------Y---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      +|+++|+.|+|||||+++|+.......             +   ....+.+.......+.....++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999976421100             0   011122333333444445678999999999998888


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce------------------
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR------------------  135 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~------------------  135 (185)
                      +..+++.+|++++|+|+.+.... ....++..+..       .++|+++++||+|+...+..                  
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-------~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~  152 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-------LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ  152 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-------cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE
Confidence            88899999999999999875433 22344443322       16799999999998753200                  


Q ss_pred             -------------------------------------eecHHHHHH----HHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          136 -------------------------------------VVSEKKAKA----WCASKGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       136 -------------------------------------~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                                                           +...+++..    -......+|++..||.++.|+..+++.|.+
T Consensus       153 ~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~  232 (237)
T cd04168         153 KVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITK  232 (237)
T ss_pred             CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHH
Confidence                                                 001111111    111122457888899999999999999998


Q ss_pred             HHhh
Q 029929          175 NALK  178 (185)
Q Consensus       175 ~~~~  178 (185)
                      .++.
T Consensus       233 ~~p~  236 (237)
T cd04168         233 LFPT  236 (237)
T ss_pred             hcCC
Confidence            8763

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.87  E-value=7.6e-21  Score=148.52  Aligned_cols=163  Identities=18%  Similarity=0.209  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK--FSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   74 (185)
                      .+|+++|+.++|||||+++|+...  +...            .....+.+.......+...++.+++|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            489999999999999999998632  1111            01122334444444444456889999999999999889


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-----
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----  149 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----  149 (185)
                      ..+++.+|++++|+|+.+.. ......++.....       .++|+++|+||+|+.+..... ..+++..+....     
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~-v~~ei~~l~~~~g~~~e  152 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDE-VVDEVFDLFAELGADDE  152 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHH-HHHHHHHHHHhhccccc
Confidence            99999999999999998632 2222344444432       167999999999987542222 223333333211     


Q ss_pred             -CCCcEEEeeeccCC----------CHHHHHHHHHHHHhhcC
Q 029929          150 -GNIPYFETSAKEGF----------NVEAAFECIAKNALKNE  180 (185)
Q Consensus       150 -~~~~~~~~s~~~~~----------~i~~~~~~i~~~~~~~~  180 (185)
                       ..++++++||++|.          |+..+++.|.+.++...
T Consensus       153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence             13689999999995          89999999999887553

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.86  E-value=3.6e-21  Score=146.39  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=103.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCccCcceeeeEEEEEEEC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF--S-----------------------------NQYKATIGADFLTKEVQFE   53 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   53 (185)
                      ....++|+++|+.++|||||+.+|+....  .                             .....+.+.+...  ..+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            44569999999999999999999975221  1                             0112233344433  3444


Q ss_pred             CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE-EFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ...+.+.+|||||++.+.......+..+|++++|+|+++.++....+.+.. .+.....     ..|+++++||+|+.+.
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVNY  156 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccCc
Confidence            556789999999999887777777889999999999998743211111111 1121111     2378999999999753


Q ss_pred             Cc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                      ..  .....+++..++...+    .++++++||++|.|+.+
T Consensus       157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            21  2223455566665543    36899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=1.9e-20  Score=138.28  Aligned_cols=162  Identities=23%  Similarity=0.164  Sum_probs=119.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----------cc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LG   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~   74 (185)
                      .+++|+++|.||+|||||+|++.+.... ....++++.+.....+.+++.  .+.++||+|...-..           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999987754 456677777877778777765  456779999322111           12


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CceeecHHHHHHHHHhcCCC
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--NSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~  152 (185)
                      ...+..+|++++|+|+..+-+-... +....+.+    .   +.+++||+||.|+.+.  ...+...+++.......+.+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a  326 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----A---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA  326 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----c---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence            3345789999999999986554442 22233322    2   6799999999999875  23344445555655666778


Q ss_pred             cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          153 PYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++++||++|.++.++++.+.+....
T Consensus       327 ~i~~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         327 PIVFISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             eEEEEEecCCCChHHHHHHHHHHHHH
Confidence            99999999999999999998876654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.86  E-value=1.4e-20  Score=146.95  Aligned_cols=159  Identities=24%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC------CcE-----E-----EEEEecCCChh
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE------DRL-----F-----TLQIWDTAGQE   68 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~~~D~~g~~   68 (185)
                      +.++..|+++|+.++|||||++++.+...........+.+........+      +..     .     .+++|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            3456789999999999999999998765443332222211111111110      110     1     26899999999


Q ss_pred             hhcccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee---------
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV---------  136 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---------  136 (185)
                      .|..++...++.+|++++|+|+++   +.+++.+..    +.    .   .++|+++++||+|+.......         
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~----~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~  151 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK----R---RKTPFVVAANKIDRIPGWKSTEDAPFLESI  151 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH----H---cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence            999888888899999999999987   555544321    11    1   167999999999985321000         


Q ss_pred             -----ecHH-------HHHHHHHh--------------cCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          137 -----VSEK-------KAKAWCAS--------------KGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       137 -----~~~~-------~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                           ...+       ++......              .+..+++++||++|.|+.+++..+..
T Consensus       152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                 0000       01011111              13478999999999999999988764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=7.1e-20  Score=119.56  Aligned_cols=159  Identities=19%  Similarity=0.293  Sum_probs=117.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC--------CCccC--cceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS--------NQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   74 (185)
                      +.+..+|+|+|+.++||||+++++......        .....  .++.-.......+. ....+++++||||.+|..+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence            456789999999999999999999877641        11111  12222222223333 33578899999999999999


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCc
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP  153 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  153 (185)
                      ....+.+.++|+++|.+.+..+ .....+..+.    ...  .+|++|++||.|+...    ...+.+++..... -..+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~----~~~--~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~~  154 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT----SRN--PIPVVVAINKQDLFDA----LPPEKIREALKLELLSVP  154 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHh----hcc--CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCCc
Confidence            9999999999999999998887 3333333332    221  2799999999999865    4566666665544 2489


Q ss_pred             EEEeeeccCCCHHHHHHHHHHH
Q 029929          154 YFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +++.++.++++..+.++.+...
T Consensus       155 vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         155 VIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeeecccchhHHHHHHHHHhh
Confidence            9999999999999999988876

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=4.6e-20  Score=147.82  Aligned_cols=155  Identities=21%  Similarity=0.197  Sum_probs=104.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccchh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY   78 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~   78 (185)
                      ..+|+++|.+|+|||||+|+|++.... ....++.+.+.........+  ..+.+|||||...        +......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            468999999999999999999987542 23345555444444444333  5788999999652        233344567


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..+|++|+|+|+.+.-.... ..+...+..       .++|+++|+||+|+....      .....+. ..+....+++|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~-~lg~~~~~~iS  417 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFW-KLGLGEPYPIS  417 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHH-HcCCCCeEEEE
Confidence            89999999999986322211 233333321       267999999999986421      1112221 12323568999


Q ss_pred             eccCCCHHHHHHHHHHHHhhc
Q 029929          159 AKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |++|.|+.+++++|.+.++..
T Consensus       418 A~~g~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCCCCCchHHHHHHHHhcccc
Confidence            999999999999999988653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=3.2e-20  Score=130.39  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccccchhccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d   82 (185)
                      +|+++|.+|+|||||+++|++........+.++.+.....+.+.+  ..+++||+||.....       ......++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998765444445555555555555544  578899999964322       12345678999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHH----------------------------------------HHhhcC----------
Q 029929           83 CCVLVYDVNVMK-SFDNLNNWREE----------------------------------------FLIQAS----------  111 (185)
Q Consensus        83 ~~i~v~d~~~~~-~~~~~~~~~~~----------------------------------------~~~~~~----------  111 (185)
                      ++++|+|+++++ ..+.+...+..                                        ++....          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 22222222211                                        000000          


Q ss_pred             -----------CCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          112 -----------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       112 -----------~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                                 ......+|+++|+||+|+...       ++...++.   ..+++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLAR---QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       011123589999999998642       22223332   24689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.86  E-value=7.7e-21  Score=131.68  Aligned_cols=150  Identities=21%  Similarity=0.138  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------ccCcceeeeEEEEEEECCcEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------------------YKATIGADFLTKEVQFEDRLFT   58 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (185)
                      ||+++|++|+|||||+++|+.......                               ..+..+.+.....+  ......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF--STPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--ecCCce
Confidence            689999999999999999975432111                               11223333333333  334457


Q ss_pred             EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce--e
Q 029929           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--V  136 (185)
Q Consensus        59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~  136 (185)
                      +.+|||||+..+.......++.+|++++|+|+++...... ......+ ....     ..++++|+||+|+......  .
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~-~~~~-----~~~iIvviNK~D~~~~~~~~~~  151 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYIL-SLLG-----IRHVVVAVNKMDLVDYSEEVFE  151 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHH-HHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence            8899999998877666777899999999999987532221 1111111 1111     1257889999999753211  1


Q ss_pred             ecHHHHHHHHHhcC--CCcEEEeeeccCCCHHHH
Q 029929          137 VSEKKAKAWCASKG--NIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~  168 (185)
                      ....++..+....+  ..+++++||++|.|+.+.
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            12334444444444  356999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.86  E-value=5.5e-20  Score=134.01  Aligned_cols=160  Identities=19%  Similarity=0.145  Sum_probs=120.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC---------hhhhcccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---------QERFQSLGVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---------~~~~~~~~~~   76 (185)
                      ...+.|.++|.+|+|||||+|++++.........+.+.+++...+.+.+ +..+.+.||.|         .+.|.+.. .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence            4568999999999999999999998887777778888899888888876 34677889999         22333332 2


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ....+|+++.|+|+++|+..+.+.....-+.    ..+....|+|+|.||+|+.....       ......... ...+.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~-~~~v~  335 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE-------ILAELERGS-PNPVF  335 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh-------hhhhhhhcC-CCeEE
Confidence            3467999999999999976666655444443    33333689999999999876422       111122222 15899


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +||++|.|++.+.+.|.+.+...
T Consensus       336 iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         336 ISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             EEeccCcCHHHHHHHHHHHhhhc
Confidence            99999999999999999988754

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=4.3e-20  Score=136.73  Aligned_cols=154  Identities=25%  Similarity=0.274  Sum_probs=112.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   77 (185)
                      .-++++++|.||+|||||+|+|.+.+.. ....++++.+.....+.+++  +.+.+.||+|..+....        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3489999999999999999999998765 45677777787777777666  67788899995443332        2345


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +..||.+++|+|++.+.+-.... .+.        ....+.|+++|.||.|+.......    ..    ......+++.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-~~~--------~~~~~~~~i~v~NK~DL~~~~~~~----~~----~~~~~~~~i~i  356 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-LIE--------LLPKKKPIIVVLNKADLVSKIELE----SE----KLANGDAIISI  356 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-HHH--------hcccCCCEEEEEechhcccccccc----hh----hccCCCceEEE
Confidence            67899999999999863322211 111        112267999999999998753211    11    22233579999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhc
Q 029929          158 SAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |+++++|++.+.+.|.+.+...
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999999988766

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.86  E-value=4.4e-20  Score=129.50  Aligned_cols=170  Identities=18%  Similarity=0.135  Sum_probs=111.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh------------hhcc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------RFQS   72 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------------~~~~   72 (185)
                      ..+.++|+|+|+||+|||||.|.+.+.+..+......++.....-+ +.....++.|+||||.-            .+..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            3567999999999999999999999999886655555444433333 33345699999999911            1111


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----------eeecHHH
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----------RVVSEKK  141 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----------~~~~~~~  141 (185)
                      .-...+..+|++++++|+++....-. ...++.+....      ++|-++|.||.|......           .+... .
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~  219 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-L  219 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccch-h
Confidence            23445678999999999996322211 12223222221      668899999999754310           01110 0


Q ss_pred             HHHHHHhcCC----------------CcEEEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          142 AKAWCASKGN----------------IPYFETSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       142 ~~~~~~~~~~----------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      ..++.+....                -.+|.+||++|+|++++.++|...++...+.+
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y  277 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY  277 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence            1111111111                23899999999999999999999998887654

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.85  E-value=2.4e-20  Score=118.19  Aligned_cols=168  Identities=22%  Similarity=0.405  Sum_probs=138.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      -.++|.++|.+..|||||+-...+..+.+.+..+.+..+..+.+.+.+....+.+||.+|++++..+......++-++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            35899999999999999999999988888888888999988999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      ++|.+.+.++..+..|+++....-.    .- --|+|++|.|+.-.-   -......+.+.+++..+ ++.++||+....
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~Nk----tA-iPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts~sI  172 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNK----TA-IPILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTSHSI  172 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCC----cc-ceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeeccccc
Confidence            9999999999999999998754321    12 236789999975321   12223334555666665 899999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 029929          164 NVEAAFECIAKNALKNE  180 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~~  180 (185)
                      ++..+|..+..++.+-.
T Consensus       173 Nv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             cHHHHHHHHHHHHhCCc
Confidence            99999999988876543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.85  E-value=4.8e-20  Score=138.69  Aligned_cols=163  Identities=15%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|+.++|||||+++|++....                .......  +.......+......+.++||||+.+
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~--T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGI--TINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCc--cEEEEeeEecCCCcEEEEEECCCHHH
Confidence            45699999999999999999999863110                1112233  33334444555556889999999998


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCce-eecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~  147 (185)
                      +.......+..+|++++|+|+........ ...+..+...       ++| +++++||+|+.+.... +...+++..+..
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            88777777889999999999986322221 1222222211       567 6788999999753221 112335555554


Q ss_pred             hcC----CCcEEEeeeccCC--------CHHHHHHHHHHHHhh
Q 029929          148 SKG----NIPYFETSAKEGF--------NVEAAFECIAKNALK  178 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~~~--------~i~~~~~~i~~~~~~  178 (185)
                      ..+    .++++++||++|.        ++.++++.|.+.++.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            443    3689999999983        678888888887763

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.4e-21  Score=122.20  Aligned_cols=165  Identities=20%  Similarity=0.268  Sum_probs=119.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +..+++++|..|+||||++.++.-.... ...|+.+.......+    ++.++.+||.+|+...+-.|..|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            5689999999999999999888765543 335666655443333    56789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|.+|.+........   +..++.+....+..+++++||.|....-.+.+-...+.-.......+.++..||.+|.|++
T Consensus        92 VVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            9999998776655432   2333344444566788999999987532111111111111112223789999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      +..+|+.+-+..+
T Consensus       169 ~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  169 PAMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.85  E-value=7e-21  Score=132.83  Aligned_cols=149  Identities=18%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEECCcEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT   58 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (185)
                      +|+++|+.++|||||+.+|+.....                               ......++.+.  ....+......
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~--~~~~~~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDV--GLAKFETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeec--ceEEEeeCCeE
Confidence            5899999999999999998632110                               01111222233  33333345578


Q ss_pred             EEEecCCChhhhcccccchhccCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS------FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      +.+|||||+..+.......++.+|++|+|+|+++...      ........... ..   ..  ..|+++++||+|+...
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~---~~--~~~iiivvNK~Dl~~~  152 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT---LG--VKQLIVAVNKMDDVTV  152 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH---cC--CCeEEEEEEccccccc
Confidence            9999999998887777777888999999999987421      01111111111 11   11  2478999999999842


Q ss_pred             C----ceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHH
Q 029929          133 N----SRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVE  166 (185)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~  166 (185)
                      .    ......+++..+....+    .++++++||++|.|+.
T Consensus       153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    11222333333344432    3789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.85  E-value=6.5e-20  Score=138.08  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|+.++|||||+++|++...                ........+.+  .....+.....++.|+||||+..
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHHH
Confidence            4569999999999999999999986210                01112233333  33444444556789999999998


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      +.......+..+|++++|+|+........ ...+..+.    .   .++|.+ +++||+|+..... .+...+++..+..
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~----~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR----Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH----H---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            88777788889999999999986322221 22222221    1   156765 5799999975321 1222335555555


Q ss_pred             hcC----CCcEEEeeeccCC----------CHHHHHHHHHHHHh
Q 029929          148 SKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL  177 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~~~----------~i~~~~~~i~~~~~  177 (185)
                      ..+    .++++++||.+|.          ++.++++.|...++
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            543    3789999999984          67888888887665

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.85  E-value=5.8e-20  Score=129.45  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccc---hhccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~   81 (185)
                      -.|.++|.||+|||||++++...+......++++..+....+.+++.. ++++-|.||.-+    ...+-..   .+..|
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            467899999999999999999998877778888888887777776644 588999999221    2222233   34679


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      +.++||+|++.+   +.++.++.+..++..+-.  ...+.|.+||+||+|+.+.     ....+.++...+....++++|
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEEee
Confidence            999999999998   777777766666654422  2336699999999998632     233356777777655699999


Q ss_pred             eccCCCHHHHHHHHHHH
Q 029929          159 AKEGFNVEAAFECIAKN  175 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~  175 (185)
                      |+.++|+.++++.|.+.
T Consensus       349 A~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLREL  365 (366)
T ss_pred             eccccchHHHHHHHhhc
Confidence            99999999999988653

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.3e-20  Score=123.08  Aligned_cols=164  Identities=28%  Similarity=0.593  Sum_probs=138.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++++++|..|.||||+.++.....+...+.++.+..........+...+.+..|||.|++.+......++-++.++|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            46999999999999999999999999999999999988877777655566899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      ++|+...-+..+..+|.+.+.+.+.     ++|+++++||.|.....   . ......+.... ++.++++|++.+.+.+
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~---~-k~k~v~~~rkk-nl~y~~iSaksn~Nfe  158 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK---V-KAKPVSFHRKK-NLQYYEISAKSNYNFE  158 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc---c-ccccceeeecc-cceeEEeecccccccc
Confidence            9999999999999999999887765     78999999999987642   1 11111111222 4789999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      .-|.|+.+.+....
T Consensus       159 kPFl~LarKl~G~p  172 (216)
T KOG0096|consen  159 RPFLWLARKLTGDP  172 (216)
T ss_pred             cchHHHhhhhcCCC
Confidence            99999999876543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.85  E-value=3.4e-20  Score=129.27  Aligned_cols=157  Identities=20%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccC--------------c---------ceeeeEEEE-------------EEEC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA--------------T---------IGADFLTKE-------------VQFE   53 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~--------------~---------~~~~~~~~~-------------~~~~   53 (185)
                      +|+++|+.++|||||+.++....+......              +         .+.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999987554321110              0         000100000             0011


Q ss_pred             CcEEEEEEecCCChhhhcccccchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .....++++||||+..+.......+.  .+|++++|+|+........ ..++..+..    .   ++|+++|+||+|+.+
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~----~---~ip~ivvvNK~D~~~  152 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA----L---NIPVFVVVTKIDLAP  152 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH----c---CCCEEEEEECccccC
Confidence            22457889999999888766555554  6899999999986433222 222232221    1   679999999999876


Q ss_pred             CCceeecHHHHHHHHHh-------------------------cCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          132 GNSRVVSEKKAKAWCAS-------------------------KGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      ........+.+..+...                         ....|++.+|+.+|+|+++++..|..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            43333334444444331                         11358999999999999999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.84  E-value=1.9e-19  Score=136.04  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|++++|||||+++|++....                ....++.+.+  .....+.....++.++||||+..
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCChHH
Confidence            45699999999999999999999864211                1112233333  33334444556788999999998


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      +.......+..+|++++|+|+........ ...+..+..    .   ++| +|+++||+|+.+... .+...+++..+..
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~----~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~  159 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ----V---GVPNIVVFLNKEDQVDDEELLELVELEVRELLS  159 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH----c---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999986422221 222222211    1   568 678999999976322 1223345556655


Q ss_pred             hcC----CCcEEEeeeccCC
Q 029929          148 SKG----NIPYFETSAKEGF  163 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~~~  163 (185)
                      ..+    .++++++||.+|.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HhCCCCCcceEEEcchhhcc
Confidence            543    3789999999886

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.84  E-value=1.3e-19  Score=136.45  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|+.++|||||+++|++...                ........+.+  .....+......+.+|||||+..
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHH
Confidence            4569999999999999999999973210                01112333333  34445555667889999999998


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      |..........+|++++|+|+........ ...+..+...       ++|.+ +++||+|+.+... .+...+++..++.
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            88777777788999999999987322221 1222222111       55655 6899999975321 1112345666666


Q ss_pred             hcCC----CcEEEeeeccCC
Q 029929          148 SKGN----IPYFETSAKEGF  163 (185)
Q Consensus       148 ~~~~----~~~~~~s~~~~~  163 (185)
                      ..+.    ++++++||.++.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             hcCCCccCccEEECcccccc
Confidence            5542    789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04169 RF3 RF3 subfamily

Probab=99.83  E-value=4.2e-19  Score=126.86  Aligned_cols=115  Identities=22%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc---------C-----------cceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK---------A-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   68 (185)
                      .+|+++|++|+|||||+++|+.........         .           ..+.+.......+......+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            589999999999999999997532110000         0           11233444445556667899999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      ++.......++.+|++|+|+|+++.... ....++...    ..   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~----~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC----RL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH----Hh---cCCCEEEEEECCccCC
Confidence            8887777788999999999999874322 122333322    11   2679999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2.2e-19  Score=138.27  Aligned_cols=157  Identities=19%  Similarity=0.219  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchh--c
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--R   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~   79 (185)
                      ..+|+++|.||+|||||+|++++........|+.+.+.....+.+.+.  .++++|+||-..+.      .....++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            357999999999999999999999988777888887777777776664  47788999932221      1222333  4


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      ..|+++-|+|++|-+.--   .+.-++.+.       +.|++++.|++|.........+.   +++.+.++ +|+++++|
T Consensus        81 ~~D~ivnVvDAtnLeRnL---yltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~---~~L~~~LG-vPVv~tvA  146 (653)
T COG0370          81 KPDLIVNVVDATNLERNL---YLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDI---EKLSKLLG-VPVVPTVA  146 (653)
T ss_pred             CCCEEEEEcccchHHHHH---HHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccH---HHHHHHhC-CCEEEEEe
Confidence            679999999999744322   222233322       77999999999998754444444   44445566 99999999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcC
Q 029929          160 KEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++|.|++++++.+.+....+.
T Consensus       147 ~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         147 KRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             ecCCCHHHHHHHHHHhccccc
Confidence            999999999999988666554

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.5e-19  Score=133.07  Aligned_cols=161  Identities=21%  Similarity=0.238  Sum_probs=120.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      .+++=|+++|+-..|||||+..+-+...........+....-..+..+. ....++|+|||||+.|..++.....-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3557799999999999999999998888777666776666666666542 345889999999999999999999999999


Q ss_pred             EEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH--HH-HhcCCCcEEEee
Q 029929           85 VLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WC-ASKGNIPYFETS  158 (185)
Q Consensus        85 i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~s  158 (185)
                      |||+|+++   |.+.+.+... +.          .++|+++++||+|.++.+......+....  .. .+-+...++++|
T Consensus        83 ILVVa~dDGv~pQTiEAI~ha-k~----------a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvS  151 (509)
T COG0532          83 ILVVAADDGVMPQTIEAINHA-KA----------AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVS  151 (509)
T ss_pred             EEEEEccCCcchhHHHHHHHH-HH----------CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence            99999998   4554443221 11          28899999999999865433332222211  00 112346899999


Q ss_pred             eccCCCHHHHHHHHHHHHh
Q 029929          159 AKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~  177 (185)
                      |++|+|+.+|+..+.-...
T Consensus       152 A~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         152 AKTGEGIDELLELILLLAE  170 (509)
T ss_pred             ccCCCCHHHHHHHHHHHHH
Confidence            9999999999998876543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.82  E-value=5.5e-19  Score=121.43  Aligned_cols=161  Identities=17%  Similarity=0.236  Sum_probs=96.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcce---eeeEEEEEEECCcEEEEEEecCCChhhhcccc-----cchhc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----VAFYR   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~~~   79 (185)
                      +++|+++|.+|+|||||+|++++...........+   .+.....+... ....+.+|||||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            47999999999999999999998654322111111   11111111111 12368999999965322222     22256


Q ss_pred             cCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---------eeecHHHHHHHHH--
Q 029929           80 GADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS---------RVVSEKKAKAWCA--  147 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~~~~~~~~~~~--  147 (185)
                      .+|+++++.+..    +... ..++..+...       +.|+++|+||+|+.....         ++...+.+++.+.  
T Consensus        80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  148 (197)
T cd04104          80 EYDFFIIISSTR----FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN  148 (197)
T ss_pred             CcCEEEEEeCCC----CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence            789988875432    2222 2344444332       468999999999854221         1112222222222  


Q ss_pred             --h--cCCCcEEEeeec--cCCCHHHHHHHHHHHHhhcC
Q 029929          148 --S--KGNIPYFETSAK--EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       148 --~--~~~~~~~~~s~~--~~~~i~~~~~~i~~~~~~~~  180 (185)
                        .  ....+++.+|+.  .+.++..+.+.|...++..+
T Consensus       149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence              1  223578999998  67999999999999998754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.82  E-value=5.5e-20  Score=139.79  Aligned_cols=162  Identities=17%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CccCcceeeeEEEEEEECCc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-----------------------------QYKATIGADFLTKEVQFEDR   55 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (185)
                      ....++|+++|+.++|||||+.+|+......                             ......+.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            3456899999999999999999886321100                             00011223333444455666


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCC--
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGG--  132 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~--  132 (185)
                      .+.++++|+||+.+|.......+..+|++|+|+|+.+. .++....|..+..+++......++| +++++||+|+...  
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~  162 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY  162 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence            78899999999999999999999999999999999862 2221000001111111111111554 6889999998631  


Q ss_pred             --CceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          133 --NSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                        .......+++..++...+    .++++++||.+|+|+.+
T Consensus       163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence              112233556666666554    47899999999999853

>cd04167 Snu114p Snu114p subfamily

Probab=99.82  E-value=3.5e-19  Score=123.92  Aligned_cols=113  Identities=25%  Similarity=0.289  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------------cCcceeeeE--EEEEEE---CCcEEEEEEecCCCh
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQY-----------------KATIGADFL--TKEVQF---EDRLFTLQIWDTAGQ   67 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~~~D~~g~   67 (185)
                      +|+++|+.++|||||+++|+........                 ....+.+..  ...+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433210                 001111211  111211   345688999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      .++......++..+|++++|+|+.+..+... ..++.....       .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccC
Confidence            9988888888999999999999987655433 233332221       157999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.82  E-value=1.1e-18  Score=131.35  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=106.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|+.++|||||+++|+.....                ....+..+.+  .....+.....++.++||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence            45689999999999999999999863110                1112233333  33444544556888999999988


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      +.......+..+|++++|+|+........ ...+..+..    .   ++|.+ +++||+|+.+... .+....++..+..
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~----~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~  159 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----V---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH----c---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence            88777778899999999999986432221 222222221    1   56876 5899999975321 1122334555554


Q ss_pred             hcC----CCcEEEeeeccCC----------CHHHHHHHHHHHHh
Q 029929          148 SKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL  177 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~~~----------~i~~~~~~i~~~~~  177 (185)
                      ..+    .++++++||.++.          ++..+++.|...++
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            432    4789999999875          56777777777654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-21  Score=127.32  Aligned_cols=174  Identities=34%  Similarity=0.598  Sum_probs=149.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE-EEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ...++++|+|..|+|||+++.+.....+...+..+++.++..+...-+... +.+.+||..||+.+..+..-+++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            345899999999999999999999888888888888888877766655543 4678999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      .+|||++..-+|+....|.+.+...+.......+|+++..||||..... ..........+....+....+++|++.+.+
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccC
Confidence            9999999999999999999998888777777778999999999987542 223345677777888878899999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +.|+-+.+++++.-+.
T Consensus       182 i~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  182 IPEAQRELVEKILVND  197 (229)
T ss_pred             hhHHHHHHHHHHHhhc
Confidence            9999999999988654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.81  E-value=1.1e-18  Score=124.91  Aligned_cols=112  Identities=19%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC------------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      +|+++|++|+|||||+++|+.....                  .......+.+.....+.  ....++.++||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~--~~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF--WKDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE--ECCEEEEEEECCCcHHHH
Confidence            5899999999999999999742211                  11122222333333333  345788999999998888


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      ..+..+++.+|++++|+|+.+...... ...+....    .   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----R---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----H---cCCCEEEEEECCCCCC
Confidence            888889999999999999987432221 22222222    1   1679999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.81  E-value=1.4e-18  Score=124.78  Aligned_cols=115  Identities=21%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCcc-----Cc-----------ceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYK-----AT-----------IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      +|+++|++|+|||||+++++.........     .+           .+.........+....+.+++|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999987533211000     00           011111222222334468899999999888878


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ...+++.+|++++|+|+++....... ..+..+.    .   .++|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~---~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----E---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----H---cCCCEEEEEECCccCCC
Confidence            88889999999999999875444322 2222221    1   16799999999997643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.81  E-value=6.4e-19  Score=133.79  Aligned_cols=168  Identities=13%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEE---------------EEC-------------
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEV---------------QFE-------------   53 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~-------------   53 (185)
                      +...++|.++|+...|||||+.+|++....   .......+.+......               .+.             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            356689999999999999999999864321   1112222211111000               000             


Q ss_pred             ---CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           54 ---DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        54 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                         .....+.|+|+||++.+.......+..+|++++|+|+... ..... ...+. +.....     -.++++++||+|+
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lg-----i~~iIVvlNKiDl  183 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMK-----LKHIIILQNKIDL  183 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcC-----CCcEEEEEecccc
Confidence               0124688999999999988888888999999999999863 12211 12111 111111     1268999999999


Q ss_pred             CCCCceeecHHHHHHHHHh--cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          130 DGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      .+........+++..+...  ...++++++||++|.|++.|++.|.+.++..
T Consensus       184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            8643233334445554432  1347999999999999999999999877644

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4e-18  Score=121.01  Aligned_cols=162  Identities=20%  Similarity=0.184  Sum_probs=114.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh-----hhhcc-ccc--ch
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-----ERFQS-LGV--AF   77 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----~~~~~-~~~--~~   77 (185)
                      ...+.|+|.|.||+|||||+++++..+....+.|+++-......+...+  ..++++||||.     ++... ..+  ..
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            3457899999999999999999999998888889988888777776554  57778899991     11111 111  12


Q ss_pred             h-ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           78 Y-RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        78 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      + +-.++++|++|.+...  +.+.-..++.++...+      +.|+++|+||+|+...    ...+++......-+....
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~~~~~~  313 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEEGGEEP  313 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhhccccc
Confidence            2 3478999999998633  3344445666665554      4599999999999854    223334433444443557


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ..+++..+.+.+.+...+.....+.
T Consensus       314 ~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         314 LKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             cceeeeehhhHHHHHHHHHHHhhch
Confidence            8899999999998888887775443

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=3.2e-18  Score=128.35  Aligned_cols=166  Identities=19%  Similarity=0.204  Sum_probs=123.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC---------------CCccCcceeeeEEEEEE-ECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---------------NQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~   69 (185)
                      .+.-|+.++-+-..|||||..+|+.....               -....+++.......+. .++..+.++++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            45678999999999999999998753321               11223333333222222 235678999999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (185)
                      |.......+.-||++|+|+|++..-.......++..+..        +..+|.|+||+|++..+...+ ..++.+.....
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V-~~q~~~lF~~~  208 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERV-ENQLFELFDIP  208 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHH-HHHHHHHhcCC
Confidence            999999999999999999999986666666666666542        567999999999998743333 23333333333


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                       ..+++.+||++|-|++++++.|++.+++...
T Consensus       209 -~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  209 -PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             -ccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence             3689999999999999999999999987654

>PLN03126 Elongation factor Tu; Provisional

Probab=99.80  E-value=2.9e-18  Score=131.03  Aligned_cols=149  Identities=17%  Similarity=0.112  Sum_probs=98.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   68 (185)
                      ....++|+++|+.++|||||+++|+....                ........+  .......+......++++|+||+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiT--i~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGIT--INTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCee--EEEEEEEEecCCcEEEEEECCCHH
Confidence            34569999999999999999999985211                111222233  333333333445688999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHH
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWC  146 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~  146 (185)
                      .+.......+..+|++++|+|+........ ..++..+...       ++| +++++||+|+.+... .+...+++..+.
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVRELL  227 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            998888888899999999999986433222 2222222211       567 778999999976321 122233555555


Q ss_pred             Hhc----CCCcEEEeeeccCC
Q 029929          147 ASK----GNIPYFETSAKEGF  163 (185)
Q Consensus       147 ~~~----~~~~~~~~s~~~~~  163 (185)
                      ...    ..++++++|+.++.
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HhcCCCcCcceEEEEEccccc
Confidence            543    24789999998874

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.80  E-value=1.5e-18  Score=133.05  Aligned_cols=154  Identities=19%  Similarity=0.114  Sum_probs=96.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------------ccCcceeeeEEEEEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------------------------------YKATIGADFLTKEVQF   52 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   52 (185)
                      ...++|+++|+.++|||||+++|+.......                                 .....+.+.  ....+
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~~  102 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRYF  102 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEEe
Confidence            4569999999999999999999875432110                                 001122233  33334


Q ss_pred             CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .....++.|+||||+..+.......+..+|++++|+|+........... +... ....     ..|+++++||+|+...
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~-~~lg-----~~~iIvvvNKiD~~~~  175 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIA-TLLG-----IKHLVVAVNKMDLVDY  175 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHH-HHhC-----CCceEEEEEeeccccc
Confidence            4445688999999998887766677899999999999976322111111 1111 1111     1378999999999753


Q ss_pred             Cc--eeecHHHHHHHHHhc---CCCcEEEeeeccCCCHHHH
Q 029929          133 NS--RVVSEKKAKAWCASK---GNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~  168 (185)
                      ..  .....+++..+....   ...+++++||++|.|+.++
T Consensus       176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            21  111222333333332   2478999999999998764

>PLN03127 Elongation factor Tu; Provisional

Probab=99.80  E-value=2.9e-18  Score=130.34  Aligned_cols=162  Identities=18%  Similarity=0.127  Sum_probs=103.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC------CC----------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR------KF----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ...++|+++|+.++|||||+++|.+.      ..          .....+..+.+  .....+.....++.|+||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence            45689999999999999999999732      10          11122333444  34444555566889999999988


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCce-eecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~  147 (185)
                      +.......+..+|++++|+|+........ ...+..+..    .   ++| +++++||+|+.+.... +...+++..+..
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~  208 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----V---GVPSLVVFLNKVDVVDDEELLELVEMELRELLS  208 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----c---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            87777777788999999999986432221 122222211    1   668 4788999999753211 111223334443


Q ss_pred             hcC----CCcEEEeeec---cCCC-------HHHHHHHHHHHHh
Q 029929          148 SKG----NIPYFETSAK---EGFN-------VEAAFECIAKNAL  177 (185)
Q Consensus       148 ~~~----~~~~~~~s~~---~~~~-------i~~~~~~i~~~~~  177 (185)
                      ..+    .++++++|+.   ++.|       +.++++.|.+.++
T Consensus       209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            322    3688888875   4554       7788888887765

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.80  E-value=1.4e-18  Score=132.27  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=101.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEEC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE   53 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (185)
                      ....++|+++|+.++|||||+.+|+.....                               .....  +.+.......+.
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence            355689999999999999999998752110                               01112  233333444455


Q ss_pred             CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---F---DNLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK  126 (185)
                      .....++++|+||+.+|.......+..+|++++|+|+.....   +   ......+.....    .   ++| +|+++||
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~---gi~~iiv~vNK  154 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----L---GVKQMIVCINK  154 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----c---CCCeEEEEEEc
Confidence            566789999999999999888888999999999999986420   0   111222222211    1   556 6789999


Q ss_pred             CCCCC----CCceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          127 TDVDG----GNSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       127 ~Dl~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                      +|...    ....+...+++..+....+    .++++++|+.+|+|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            99532    1223333445555555433    37899999999999864

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.80  E-value=2e-18  Score=123.03  Aligned_cols=166  Identities=16%  Similarity=0.112  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh----ccccc---chhccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGV---AFYRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~---~~~~~~d   82 (185)
                      .|.++|.||+|||||+++++..+......|+++..+....+.+. ..-.+++-|.||.-+-    ..+-.   ..+..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            57789999999999999999998887778888888877777763 3346888899993221    22222   2346789


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           83 CCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        83 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      ++++|+|++..+   ..+.......++..+-...  .++|.++|+||+|+...  .+........+........++++|+
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L--~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL--AEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh--ccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceeeeh
Confidence            999999998644   3555555555555442222  26699999999997654  2333333333433344233333999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcC
Q 029929          160 KEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .++.|+++++..+.+.+....
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999998887664

>cd01850 CDC_Septin CDC/Septin

Probab=99.80  E-value=4.1e-18  Score=122.32  Aligned_cols=145  Identities=13%  Similarity=0.155  Sum_probs=93.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----   71 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----   71 (185)
                      ...++|+|+|.+|+|||||+|+|++..+...          ..++.+.......+..++..+.+++|||||-....    
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3468999999999999999999998876533          23344445555555666777899999999932211    


Q ss_pred             ----------------------ccccchh--ccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929           72 ----------------------SLGVAFY--RGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (185)
Q Consensus        72 ----------------------~~~~~~~--~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  126 (185)
                                            ......+  ..+|+++|+++.+.... ... ..++..+    ..    ++|+++|+||
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l----~~----~v~vi~VinK  152 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRL----SK----RVNIIPVIAK  152 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHH----hc----cCCEEEEEEC
Confidence                                  0111222  25789999998874211 111 2222322    11    5799999999


Q ss_pred             CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929          127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|+....+.....+.+.+.+...+ ++++.....
T Consensus       153 ~D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~  185 (276)
T cd01850         153 ADTLTPEELKEFKQRIMEDIEEHN-IKIYKFPED  185 (276)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHcC-CceECCCCC
Confidence            999764434445556666666665 777766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.79  E-value=2e-18  Score=130.39  Aligned_cols=150  Identities=19%  Similarity=0.147  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC---------------------------------CccCcceeeeEEEEEEECCc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSN---------------------------------QYKATIGADFLTKEVQFEDR   55 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   55 (185)
                      ++|+++|+.++|||||+.+|+......                                 ......+.+..  ...+...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~--~~~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVA--YRYFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEee--eEEEccC
Confidence            589999999999999999986432110                                 01111223332  3333344


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ...+.++||||+..|.......+..+|++++|+|+.........+. +..+. ...     ..++++++||+|+......
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~-~~~-----~~~iivviNK~D~~~~~~~  151 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIAS-LLG-----IRHVVLAVNKMDLVDYDEE  151 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHH-HcC-----CCcEEEEEEecccccchHH
Confidence            5688999999999987777778899999999999986432221111 11111 111     2258899999999753211


Q ss_pred             --eecHHHHHHHHHhcC--CCcEEEeeeccCCCHHH
Q 029929          136 --VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       136 --~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~  167 (185)
                        +...+++..+....+  .++++++||.+|+|+.+
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              111233333333332  36799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.79  E-value=5.3e-19  Score=122.82  Aligned_cols=171  Identities=19%  Similarity=0.274  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----cccchhccCcE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC   83 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~   83 (185)
                      ||+++|+.+|||||+.+.++++..+.. ..-..+.+.....+... ....+.+||+||+..+..     .....++.+++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999998887764422 11223333344444322 346899999999865543     35667899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH----HhcC--CCcEEEe
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC----ASKG--NIPYFET  157 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~  157 (185)
                      +|||+|+.+.+-.+.+..+..-+......  .++..+.++++|+|+..++.+....++..+..    ...+  .+.++.+
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            99999999655455544443333222111  23778999999999987654444444333322    2222  2668888


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCCccc
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEPQEE  184 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~~~~  184 (185)
                      |..+ +.+-+++..+++.+.++.+..|
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP~~~~le  183 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIPNLSTLE  183 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred             cCcC-cHHHHHHHHHHHHHcccHHHHH
Confidence            8887 6899999999999887765544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.79  E-value=4.3e-18  Score=118.30  Aligned_cols=113  Identities=20%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC----------------ccCcceeeeEEEEEEEC--------CcEEEEEEecCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ----------------YKATIGADFLTKEVQFE--------DRLFTLQIWDTA   65 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~   65 (185)
                      +|+++|+.++|||||+.+|+.......                .....+.........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999975432100                01111112112222222        347889999999


Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      |+..+......+++.+|++++|+|+....+.... ..+....    .   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~----~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL----K---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH----H---cCCCEEEEEECCCcc
Confidence            9999999999999999999999999976554432 2222221    1   156999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=9.1e-18  Score=126.02  Aligned_cols=159  Identities=23%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .++.-|-++|+..-|||||+.+|-+.........+++..+.--.+..+. +-.++|+|||||..|..++....+-.|.++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            4667899999999999999999999888776666776666666666663 368999999999999999999999999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH--HHHh-cCCCcEEEeee
Q 029929           86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSA  159 (185)
Q Consensus        86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~  159 (185)
                      +|+.++|   |.+.+.++        +...   .++|+++.+||+|.++.+......+.+..  .... -++.+++++||
T Consensus       230 LVVAadDGVmpQT~EaIk--------hAk~---A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSA  298 (683)
T KOG1145|consen  230 LVVAADDGVMPQTLEAIK--------HAKS---ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISA  298 (683)
T ss_pred             EEEEccCCccHhHHHHHH--------HHHh---cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence            9999988   34443332        1122   28899999999998875433222222111  1111 24678999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKNA  176 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~  176 (185)
                      ++|.|++.|.+.+.-..
T Consensus       299 l~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  299 LTGENLDLLEEAILLLA  315 (683)
T ss_pred             ccCCChHHHHHHHHHHH
Confidence            99999999998877654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.78  E-value=2.5e-17  Score=120.00  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=101.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE---------------------CC-cEEEEEEecCCCh-
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ-   67 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~D~~g~-   67 (185)
                      |+++|.+|+|||||++++++........|+++.++......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999988765444455544443333222                     12 3467999999996 


Q ss_pred             ---hhhcccccc---hhccCcEEEEEEECCC---------------h-hhHHHHH----HH--------HHH--------
Q 029929           68 ---ERFQSLGVA---FYRGADCCVLVYDVNV---------------M-KSFDNLN----NW--------REE--------  105 (185)
Q Consensus        68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~~~~~~~----~~--------~~~--------  105 (185)
                         .....+...   .++.+|++++|+|++.               | +.++.+.    .|        +..        
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333333   4789999999999973               1 1111111    11        000        


Q ss_pred             ---------------------HHhhcCC----C-----------------CCCCCcEEEEEeCCCCCCCCceeecHHHHH
Q 029929          106 ---------------------FLIQASP----S-----------------DPENFPFVVLGNKTDVDGGNSRVVSEKKAK  143 (185)
Q Consensus       106 ---------------------~~~~~~~----~-----------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  143 (185)
                                           +...+..    .                 ....+|+++++||+|+....  . ..+   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~--~-~~~---  234 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE--N-NIS---  234 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH--H-HHH---
Confidence                                 0000000    0                 02246999999999975431  1 111   


Q ss_pred             HHHHhcCCCcEEEeeeccCCCHHHHHH-HHHHHHhhcC
Q 029929          144 AWCASKGNIPYFETSAKEGFNVEAAFE-CIAKNALKNE  180 (185)
Q Consensus       144 ~~~~~~~~~~~~~~s~~~~~~i~~~~~-~i~~~~~~~~  180 (185)
                      .+.......+++++||+.+.++.++.+ .+.+.+++..
T Consensus       235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~  272 (318)
T cd01899         235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS  272 (318)
T ss_pred             HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence            222233346899999999999999998 6999887653

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.78  E-value=8.2e-18  Score=130.10  Aligned_cols=117  Identities=21%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      +..+|+++|+.++|||||.++|+.......                    .....+.++......+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            457999999999999999999964211100                    001112333344444455567899999999


Q ss_pred             hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      +.++......+++.+|++|+|+|+++.... ....++...    ..   .++|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----Hh---cCCCEEEEEECCcccc
Confidence            998888778888999999999999874322 122333222    22   2779999999999865

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.77  E-value=4.7e-17  Score=115.34  Aligned_cols=159  Identities=20%  Similarity=0.150  Sum_probs=114.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----h---cccccchh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----F---QSLGVAFY   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~~~   78 (185)
                      +.--+++++|.|++|||||+++|++.+......++++.+.....+.+.+  .+++++|+||.-.    -   ........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3456899999999999999999999998888889999999888888876  5777889998221    1   23455667


Q ss_pred             ccCcEEEEEEECCChhh-HHHHHHHHHHH---------------------------------------------------
Q 029929           79 RGADCCVLVYDVNVMKS-FDNLNNWREEF---------------------------------------------------  106 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~-~~~~~~~~~~~---------------------------------------------------  106 (185)
                      +.||++++|+|+..... .+.+.+.+...                                                   
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            89999999999996554 44444333320                                                   


Q ss_pred             -----------HhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          107 -----------LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       107 -----------~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                                 .+.... ...-+|.+.|.||+|+...       ++...+...   ...+++||+++.|++++.+.|.+.
T Consensus       219 ~Ir~dvTlDd~id~l~~-nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~---~~~v~isa~~~~nld~L~e~i~~~  287 (365)
T COG1163         219 LIREDVTLDDLIDALEG-NRVYKPALYVVNKIDLPGL-------EELERLARK---PNSVPISAKKGINLDELKERIWDV  287 (365)
T ss_pred             EEecCCcHHHHHHHHhh-cceeeeeEEEEecccccCH-------HHHHHHHhc---cceEEEecccCCCHHHHHHHHHHh
Confidence                       000000 0112289999999998852       233333332   278999999999999999999887


Q ss_pred             Hh
Q 029929          176 AL  177 (185)
Q Consensus       176 ~~  177 (185)
                      +-
T Consensus       288 L~  289 (365)
T COG1163         288 LG  289 (365)
T ss_pred             hC
Confidence            63

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.5e-18  Score=111.18  Aligned_cols=157  Identities=20%  Similarity=0.309  Sum_probs=114.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .-+++++|-.|+|||||++.|-+..... ..||..  +++....+.  +..++.+|.+|+...+..+..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            3589999999999999999888766442 223321  112223333  46788899999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH------HHhc----------CC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW------CASK----------GN  151 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~----------~~  151 (185)
                      +|+.+.+.+.+...-++.+...-...   +.|+++.+||+|.+...    ..++.+..      ....          ..
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la---~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~rp  167 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLA---TVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNVRP  167 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHh---cCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCCCe
Confidence            99999999988776666655443333   78999999999998753    22222221      1110          12


Q ss_pred             CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          152 IPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       152 ~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ..++.||...+.|..+.+.|+.+.+
T Consensus       168 ~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  168 LEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEEEEEccCccceeeeehhhhc
Confidence            3578899999999999999987754

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=1.5e-17  Score=123.01  Aligned_cols=168  Identities=15%  Similarity=0.171  Sum_probs=124.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC---------------CCCccCcceeeeEEEEEEE---CCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~   67 (185)
                      .+..+..++-+-..|||||..++.....               .-....+++.......+.+   ++..+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            4556889999999999999999875322               1123334444444444433   347899999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (185)
                      -+|.......+..|.++++|+|++..-....+...+..+..        +.-++-|+||+||+..+. +...+++.....
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adp-ervk~eIe~~iG  157 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADP-ERVKQEIEDIIG  157 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCH-HHHHHHHHHHhC
Confidence            99999999999999999999999986555666666665532        557999999999997642 223444444433


Q ss_pred             hcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          148 SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       148 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                       .+....+.+||++|.|++++++.|++.++....+.
T Consensus       158 -id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~  192 (603)
T COG0481         158 -IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP  192 (603)
T ss_pred             -CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence             33357899999999999999999999999776443

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.77  E-value=7.8e-18  Score=133.68  Aligned_cols=155  Identities=19%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCc--------------------ceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KAT--------------------IGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-----------~~~--------------------~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++++|||||+++|+........           ...                    .+.+.......+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            34589999999999999999999864321110           000                    11122222223334


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  134 (185)
                      ...++.++||||+..+.......+..+|++++|+|+........ ......+... .     ..++++++||+|+...+.
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-----~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-----IRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-----CCeEEEEEEecccccchh
Confidence            45678899999998887666677899999999999976432211 1111111111 1     236889999999975211


Q ss_pred             --eeecHHHHHHHHHhcC--CCcEEEeeeccCCCHHH
Q 029929          135 --RVVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       135 --~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~  167 (185)
                        ......++..+....+  ..+++++||++|.|+.+
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              1112233333434333  35799999999999874

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.77  E-value=2.1e-18  Score=130.07  Aligned_cols=167  Identities=21%  Similarity=0.250  Sum_probs=118.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|..|+||||||.++....+.+...+-.......  .......+..+++|++...+.+......++++|++.+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            45999999999999999999999999876544433222212  2222233457889998877666666788899999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-CCcEEEeeeccCCC
Q 029929           87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFN  164 (185)
Q Consensus        87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  164 (185)
                      +|+.+++++.+.+. .|+..+.+...  ...++|+|+|+||+|....+...... ...-+...+. .-..++|||++-.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~-~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEV-NTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhH-HHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            99999999999995 57776655431  12378999999999998654331111 1222222221 12468999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029929          165 VEAAFECIAKNALK  178 (185)
Q Consensus       165 i~~~~~~i~~~~~~  178 (185)
                      +.++|..-.+++..
T Consensus       163 ~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  163 VSELFYYAQKAVIH  176 (625)
T ss_pred             hHhhhhhhhheeec
Confidence            99999887776653

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=5.2e-18  Score=117.81  Aligned_cols=165  Identities=15%  Similarity=0.221  Sum_probs=111.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFY   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~   78 (185)
                      ..+++|+++|.+|+|||||||+|+.....+...-..+.+.........+. -.+++||+||..+       ++.....++
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            45789999999999999999999976655443333333333333322222 4788999999433       666778888


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------ce-------eecH---HHH
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN------SR-------VVSE---KKA  142 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~-------~~~~---~~~  142 (185)
                      ...|++++++++.++.-.-. ..++..+.....     +.++++++|.+|.....      ..       +...   +.+
T Consensus       116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             hhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            99999999999998654333 345555543332     36999999999986542      00       0111   112


Q ss_pred             HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ..+++.  -.|++..+...+.|++.+...+++.++..
T Consensus       190 ~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         190 GRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            222232  24788888899999999999999988743

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2.6e-18  Score=125.36  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=102.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCccCcceeeeEEEEEEECCc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-----------------------------NQYKATIGADFLTKEVQFEDR   55 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (185)
                      ....++++++|+..+|||||+-+|+-....                             .....-.+.+.......++..
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            345699999999999999999888532110                             001112234555555566666


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHH--HHHH--HHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNW--REEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .+.++++|+||+.+|-..+.....++|++|+|+|+.+.+--..  ....  -+.++.  ...+  -..+|+++||+|+.+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La--~tlG--i~~lIVavNKMD~v~  159 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA--RTLG--IKQLIVAVNKMDLVS  159 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH--HhcC--CceEEEEEEcccccc
Confidence            7889999999999999999999999999999999987631111  0000  011111  1111  125788999999987


Q ss_pred             CCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          132 GNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                      -++  .+....+...+....+    ..+|+++|+..|+|+.+
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            421  1222223333333333    36799999999998754

>PRK13351 elongation factor G; Reviewed

Probab=99.76  E-value=1.5e-17  Score=133.27  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=81.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccC---cceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-------------QYKA---TIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ...+|+++|+.++|||||+++|+......             ...+   ..+.+.......+......+++|||||+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            45799999999999999999997532110             0000   0111122222223334578999999999998


Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ...+..+++.+|++++|+|+++.........| ..+..       .++|+++++||+|+...
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence            88888999999999999999986655543333 22221       16799999999998753

>TIGR00503 prfC peptide chain release factor 3

Probab=99.76  E-value=2.3e-17  Score=127.66  Aligned_cols=118  Identities=21%  Similarity=0.212  Sum_probs=81.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   65 (185)
                      .+..+|+++|+.++|||||+++|+.......                    .....+.++......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3567999999999999999999853211100                    00112334444455556667899999999


Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      |+..+.......++.+|++|+|+|+.+.-. .....++...    ..   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~----~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT----RL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH----Hh---cCCCEEEEEECccccC
Confidence            998888777778899999999999986321 1122333322    11   2679999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.76  E-value=5.5e-17  Score=111.49  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCc--cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccc----c
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLG----V   75 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~----~   75 (185)
                      ++|+++|.+|+|||||+|++++.......  .+..+...........  +..+.++||||..+..       ...    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654322  1222333333333333  3578899999943321       111    1


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceee----cHHHHHHHHHhcCC
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGN  151 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~  151 (185)
                      ......|++++|+++.+ -+.+. ...+..+...+...  .-.++++++|+.|.......+.    ....++......+ 
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence            22357899999999986 22221 23344444333211  1237899999999765422111    1234455555544 


Q ss_pred             CcEEEee-----eccCCCHHHHHHHHHHHHhhcCC
Q 029929          152 IPYFETS-----AKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       152 ~~~~~~s-----~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ..++..+     +..+.++.++++.|.+.+.++.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~  188 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG  188 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence            3444444     45678899999999999997543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.74  E-value=1.1e-16  Score=100.89  Aligned_cols=106  Identities=20%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccchhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR   79 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~   79 (185)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+.+.+.  .+.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998643 2333344444444455555554  446999999321         1112333448


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  126 (185)
                      .+|++++|+|++++.. +....+++.+.        .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence            8999999999877322 22233333331        26799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.73  E-value=1.4e-17  Score=111.13  Aligned_cols=119  Identities=22%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccch---hccCcEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC   84 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~~   84 (185)
                      -.|+++|+.|||||+|...|..+...+...+. .  . ...+.+ ......+.++|+|||.+.+......   ...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--N-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-S--E-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--C-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            57899999999999999999998644322222 1  1 111222 1233467889999999888765554   7889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           85 VLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        85 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |||+|++. +........++-.++...... ...+|++|++||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence            99999985 444444444444444443322 337799999999999765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.72  E-value=5e-17  Score=99.59  Aligned_cols=138  Identities=25%  Similarity=0.296  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----hhcccccchhccCcEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV   85 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i   85 (185)
                      |++++|+.|||||||.+++.+......  .|-       -+++....    .+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ-------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ-------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--ccc-------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999998764321  111       11222221    45999933    33333344557899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|-.++++++.-.     ..+...      ...|+|-|++|.||++.    ...+..+.+...-+.-++|.+|+.++.|+
T Consensus        70 ~v~~and~~s~f~-----p~f~~~------~~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI------GVKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             eeecccCccccCC-----cccccc------cccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            9999998765422     112111      14579999999999853    34555666667777789999999999999


Q ss_pred             HHHHHHHHHH
Q 029929          166 EAAFECIAKN  175 (185)
Q Consensus       166 ~~~~~~i~~~  175 (185)
                      +++++.|...
T Consensus       135 ~~l~~~L~~~  144 (148)
T COG4917         135 EELVDYLASL  144 (148)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>PRK12739 elongation factor G; Reviewed

Probab=99.72  E-value=3.2e-16  Score=125.58  Aligned_cols=117  Identities=18%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC------------------CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ....+|+++|+.++|||||+++|+.....                  ....+.++.+.....+..  ...+++++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence            34679999999999999999999753111                  001223333433334433  4568899999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .++...+...++.+|++++|+|+........ ...+..+.    ..   ++|.++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~----~~---~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD----KY---GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence            8888888889999999999999987533222 22222222    11   6799999999998753

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.71  E-value=9e-16  Score=115.03  Aligned_cols=83  Identities=22%  Similarity=0.298  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE---------------------C-CcEEEEEEecCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG   66 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~g   66 (185)
                      ++|+++|.+|+|||||+++|++........++.+.++......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988766444455554444433221                     1 1236789999999


Q ss_pred             h----hhhcccccch---hccCcEEEEEEECC
Q 029929           67 Q----ERFQSLGVAF---YRGADCCVLVYDVN   91 (185)
Q Consensus        67 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   91 (185)
                      .    .....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    2223333344   78999999999997

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.1e-16  Score=107.12  Aligned_cols=163  Identities=18%  Similarity=0.257  Sum_probs=103.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc---cCc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD   82 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d   82 (185)
                      +..-.|+++|+.+||||+|...|..+......   +.++.....+.+..  -.++++|.|||.+.+.-...++.   .+-
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~ak  110 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAK  110 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccce
Confidence            34468999999999999999998877433221   11222222232232  24789999999998887777776   688


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH----Hh---------
Q 029929           83 CCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC----AS---------  148 (185)
Q Consensus        83 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~---------  148 (185)
                      +++||+|... .........++-.+...... ...+.|++|+.||.|+.-....+...+.+++-.    ..         
T Consensus       111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~  189 (238)
T KOG0090|consen  111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD  189 (238)
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            9999999865 22333333333334333322 233679999999999975433333333222111    00         


Q ss_pred             ---------------------c-CCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          149 ---------------------K-GNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       149 ---------------------~-~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                                           . ....|.++|++++ +++++-+||.++
T Consensus       190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                 0 1245788999988 899999999875

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.70  E-value=2.7e-16  Score=126.05  Aligned_cols=116  Identities=18%  Similarity=0.072  Sum_probs=80.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-----C-------------ccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-----Q-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   68 (185)
                      ...+|+++|++++|||||+++|.......     .             ....++.+.....+..  .+.++++|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCCc
Confidence            45799999999999999999997432110     0             0122333333333333  45789999999998


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ++......+++.+|++++|+|+.+....... .++..+.    ..   ++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~---~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RY---EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence            8887888889999999999999875443322 2222222    11   6799999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.4e-15  Score=108.93  Aligned_cols=169  Identities=23%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCcceeeeEEEEEEE-------CCcEEEEEEecCCChhhhc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~g~~~~~   71 (185)
                      ...+++.++|+..||||||.+++..-.       -+.+.....+.+..-..+..       .+...+++++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345999999999999999999996432       12333344444444444332       3455788999999998877


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH---
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNW-REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---  147 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---  147 (185)
                      ........-.|.+++|+|+........++.+ +.++.         ....++|+||+|...++.+.-..+.......   
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL  155 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL  155 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---------ccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence            7666666778999999999864333332221 11221         3368899999998876555443333332222   


Q ss_pred             -h---cCCCcEEEeeeccC----CCHHHHHHHHHHHHhhcCCcc
Q 029929          148 -S---KGNIPYFETSAKEG----FNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       148 -~---~~~~~~~~~s~~~~----~~i~~~~~~i~~~~~~~~~~~  183 (185)
                       .   .++.|++++|+..|    +++.++.+.|..++.....+.
T Consensus       156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence             1   23589999999999    789999999998888665554

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.6e-16  Score=117.03  Aligned_cols=170  Identities=19%  Similarity=0.137  Sum_probs=106.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---------ccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~   75 (185)
                      +..++|+++|+||+|||||+|+|.+.+.. ..+.++++.+..-..+.++  ++.+.+.||+|..+...         ...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--GVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--CeEEEEEeccccccccCChhHHHhHHHHH
Confidence            34589999999999999999999988865 4556666666655555544  47788889999554111         123


Q ss_pred             chhccCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCC--CCCCCCcEEEEEeCCCCCCCCc-eee-cHHHHHHHHHhc
Q 029929           76 AFYRGADCCVLVYDVNV--MKSFDNLNNWREEFLIQASP--SDPENFPFVVLGNKTDVDGGNS-RVV-SEKKAKAWCASK  149 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~  149 (185)
                      ..+..+|++++|+|+..  -++...+...+......+..  ....+.|++++.||.|+..... ... .......  ...
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~  421 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGR  421 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccC
Confidence            34578999999999943  22222222333332221111  0112468999999999986511 000 0001111  111


Q ss_pred             CCCc-EEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          150 GNIP-YFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       150 ~~~~-~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +..+ +.++|+++++|++++...|...+...
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            1233 45599999999999999988876543

>PRK09866 hypothetical protein; Provisional

Probab=99.69  E-value=2.4e-15  Score=116.20  Aligned_cols=111  Identities=24%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             EEEEEecCCChhh-----hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           57 FTLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        57 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .++.|+||||...     +.......+..+|+++||+|+....+... ..+...+..    .+. +.|+++|+||+|+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk----~~K-~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA----VGQ-SVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh----cCC-CCCEEEEEEcccCCC
Confidence            4678999999432     22234457899999999999987433332 222333321    111 259999999999864


Q ss_pred             CCceeecHHHHHHHHH----h--cCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          132 GNSRVVSEKKAKAWCA----S--KGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ..  ....+.+..+..    .  .....++++||+.|.|++++++.|...
T Consensus       304 re--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        304 RN--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             cc--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            32  122334444322    1  123579999999999999999998873

>PRK00007 elongation factor G; Reviewed

Probab=99.67  E-value=9.7e-16  Score=122.78  Aligned_cols=146  Identities=15%  Similarity=0.073  Sum_probs=90.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------CccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--N----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ....+|+++|++++|||||+++|+.....  .                ...+..+.+.....+..  ....++++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCCCc
Confidence            44679999999999999999999742111  0                01223333333333333  3568899999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (185)
                      .++.......++.+|++++|+|+...-.... ...+..+...       ++|.++++||+|+..... ....+++++...
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~-------~~p~iv~vNK~D~~~~~~-~~~~~~i~~~l~  156 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY-------KVPRIAFVNKMDRTGADF-YRVVEQIKDRLG  156 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc-------CCCEEEEEECCCCCCCCH-HHHHHHHHHHhC
Confidence            8887778888899999999999876433332 2222222211       679999999999986431 112223322222


Q ss_pred             hcCCCcEEEeeeccC
Q 029929          148 SKGNIPYFETSAKEG  162 (185)
Q Consensus       148 ~~~~~~~~~~s~~~~  162 (185)
                      .......+++|+..+
T Consensus       157 ~~~~~~~ipisa~~~  171 (693)
T PRK00007        157 ANPVPIQLPIGAEDD  171 (693)
T ss_pred             CCeeeEEecCccCCc
Confidence            211134556666554

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.67  E-value=3.8e-16  Score=116.34  Aligned_cols=167  Identities=16%  Similarity=0.054  Sum_probs=116.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh-----hhcc-cccchh-
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQS-LGVAFY-   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~-~~~~~~-   78 (185)
                      .....++++|.||+|||||++.++..+....+.++++.......+  +.....++++||||.-     +... ...... 
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            445688999999999999999999888777767776655554444  3344577888999921     1111 111111 


Q ss_pred             --ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           79 --RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        79 --~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                        +--.+|+|++|++...  +.+.-..+++.+...+.     +.|+|+|+||+|+...+......+++.+.....+++++
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v  318 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV  318 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence              3345889999998743  34443456666665554     67999999999998765555555556565666666999


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +.+|+.+.+|+.++.....++++..
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHH
Confidence            9999999999988877766665543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.1e-15  Score=108.26  Aligned_cols=171  Identities=18%  Similarity=0.161  Sum_probs=118.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeE------------------EEEEEEC------CcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFL------------------TKEVQFE------DRLFT   58 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~~   58 (185)
                      +..++|.++|+...|||||..+|.+--..   +.....++....                  ...-...      ..-..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            45799999999999999999999753211   111111111000                  0000011      12346


Q ss_pred             EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS  138 (185)
Q Consensus        59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  138 (185)
                      +.|+|.|||+.....+.....-.|++++|++++.+..-......+..+.-+.      -..++|+-||+|++..+.....
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHHHHHHH
Confidence            7899999999888877777788999999999998543333333333332211      1258899999999987777778


Q ss_pred             HHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      ++++++|....  .++|++++||..+.|++-+++.|.+.++....+
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            88888888754  358999999999999999999999999866543

>PRK12740 elongation factor G; Reviewed

Probab=99.65  E-value=4.9e-15  Score=118.77  Aligned_cols=109  Identities=19%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCC------------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccccc
Q 029929           14 LGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV   75 (185)
Q Consensus        14 iG~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   75 (185)
                      +|+.++|||||+++|.......                  ...++.+.......+..  .++.+++|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence            5999999999999996432210                  00122222332333333  457899999999988877788


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .++..+|++++|+|++......... .+..+..       .++|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-------~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-------YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-------cCCCEEEEEECCCCCCC
Confidence            8899999999999998865544332 2222221       16799999999998643

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.64  E-value=6.8e-15  Score=120.48  Aligned_cols=146  Identities=23%  Similarity=0.229  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc----------------EEEEEEecCCChhhhcccccchhccCcE
Q 029929           20 GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus        20 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      +||||+.++.+.........+++.......+..+..                ...+.||||||++.+..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            499999999998887666666665555544444321                1137999999999998888778888999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce--------------eecHHHHH---
Q 029929           84 CVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--------------VVSEKKAK---  143 (185)
Q Consensus        84 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------------~~~~~~~~---  143 (185)
                      +++|+|+++   +.+.+.+.    .+..       .++|+++++||+|+......              +...+++.   
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l  621 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKL  621 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence            999999986   44444332    1111       15799999999999642110              00011111   


Q ss_pred             -HH----HH-------------hcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          144 -AW----CA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       144 -~~----~~-------------~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                       .+    ..             ..+.++++++||++|+|+++++.+|....
T Consensus       622 ~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        622 YELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence             01    10             12357899999999999999999886543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.62  E-value=9.1e-16  Score=106.58  Aligned_cols=120  Identities=20%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             EEEEEecCCChhhh------cccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           57 FTLQIWDTAGQERF------QSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        57 ~~~~~~D~~g~~~~------~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      ....++|||||-+.      .......+  ...-+++||+|.....+..   .|...++..+...-..+.|+|+++||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~---tFMSNMlYAcSilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT---TFMSNMLYACSILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch---hHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence            55778999995432      12222222  2345777888875422221   2222222222222223779999999999


Q ss_pred             CCCCCceeecHHHHHHHH-----------------------HhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          129 VDGGNSRVVSEKKAKAWC-----------------------ASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +.+..-...+-.+...|-                       .-+.....+.+|+.+|.|+++++..+-+.+-+.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            987532111111111110                       112346789999999999999999988776543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.62  E-value=2.9e-14  Score=106.05  Aligned_cols=87  Identities=23%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~   69 (185)
                      +...++|+++|.||+|||||+|+|++........|+++.++....+.+.+.               ..++.++|+||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            345689999999999999999999988776666677776666666655432               23588999999322


Q ss_pred             -------hcccccchhccCcEEEEEEECC
Q 029929           70 -------FQSLGVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        70 -------~~~~~~~~~~~~d~~i~v~d~~   91 (185)
                             ........++.+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1112233457899999999984

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.62  E-value=5e-15  Score=119.14  Aligned_cols=119  Identities=21%  Similarity=0.198  Sum_probs=80.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---ccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK---------------FSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ....+|+++|+.++|||||+++|+...               +.+.   ...+.........+.+++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            445799999999999999999997531               1110   1112222222233345667789999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .++.......++.+|++++|+|+...-.... ...+....    .   .+.|.++++||+|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~---~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----K---ENVKPVLFINKVDRLIN  153 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----H---cCCCEEEEEEChhcccc
Confidence            9888888889999999999999986322222 11112111    1   15688999999998653

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.62  E-value=3.8e-15  Score=105.87  Aligned_cols=117  Identities=18%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             EEEEecCCChhhhc---ccccchh---cc--CcEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           58 TLQIWDTAGQERFQ---SLGVAFY---RG--ADCCVLVYDVNVMKSFDNLN--NWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        58 ~~~~~D~~g~~~~~---~~~~~~~---~~--~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      .+.+||+||+.+..   ..+..++   ..  .+++++|+|+..........  .++.... ...    .+.|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~----~~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLR----LGLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHH----cCCCEEEEEEhH
Confidence            57899999965532   2222222   22  89999999997644333321  1222111 111    167999999999


Q ss_pred             CCCCCCceeecHHHHH------------------------HHHHhcC-CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          128 DVDGGNSRVVSEKKAK------------------------AWCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       128 Dl~~~~~~~~~~~~~~------------------------~~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      |+......+.....+.                        +.....+ ..+++++|++++.|+++++++|.+.+...
T Consensus       173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~  249 (253)
T PRK13768        173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG  249 (253)
T ss_pred             hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence            9986533222211111                        1112222 35899999999999999999999887543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.61  E-value=3.2e-14  Score=105.48  Aligned_cols=166  Identities=17%  Similarity=0.190  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--C------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS--N------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      .-+|+++-+...|||||+..|+.+...  .            ....-.+.++-.+...+...++.+.++|||||.+|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            358999999999999999999865432  1            11112234444444445556689999999999999999


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----  148 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----  148 (185)
                      ....+.-+|++++++|+.+...... .-.+...+   ..    +.+.|+|+||+|.+......+..+....|..-     
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl---~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de  156 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQT-RFVLKKAL---AL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE  156 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCch-hhhHHHHH---Hc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence            9999999999999999998433322 11111111   11    55779999999998875544444444444321     


Q ss_pred             cCCCcEEEeeeccC----------CCHHHHHHHHHHHHhhcCC
Q 029929          149 KGNIPYFETSAKEG----------FNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       149 ~~~~~~~~~s~~~~----------~~i~~~~~~i~~~~~~~~~  181 (185)
                      .-+.|+++.|+..|          .++..+|+.|++.++....
T Consensus       157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            11479999999876          3699999999999987654

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=5.5e-15  Score=111.95  Aligned_cols=159  Identities=21%  Similarity=0.234  Sum_probs=104.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCccCcceeeeEEEEEEECCcE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-----------------------------SNQYKATIGADFLTKEVQFEDRL   56 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (185)
                      ...++++++|+..+|||||+.+++..-.                             .....+-.+.+.......++-..
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            3568999999999999999988753211                             01111223344444445555667


Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-  132 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-  132 (185)
                      ..++++|+||+..|...+.....++|++++|+|++..   ..|+ ......+....++..+  -.-++|++||+|+++- 
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS  331 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence            7899999999999999999999999999999999852   1222 1111111111112221  2257889999999873 


Q ss_pred             -CceeecHHHHHHHH-HhcC----CCcEEEeeeccCCCHHH
Q 029929          133 -NSRVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       133 -~~~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                       +.++.....+..|. +..+    ...|++||+..|+|+-.
T Consensus       332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence             33444455555565 3333    35899999999998643

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.61  E-value=1.9e-14  Score=99.92  Aligned_cols=166  Identities=16%  Similarity=0.109  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc--CcceeeeEEEEEEECCcEEEEEEecCCChhhh-------ccccc----
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV----   75 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~----   75 (185)
                      ++|+|+|.+||||||++|.+++........  ...+..........++  ..+.++||||-.+.       .....    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999887654322  2223333333334444  57789999992211       11111    


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec-----HHHHHHHHHhcC
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-----EKKAKAWCASKG  150 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~  150 (185)
                      ......|++++|+..+.. +.+. ...+..+...+...-  -..++||+|..|.......+..     ...++.+....+
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence            123568999999999832 2222 233334444333211  1258899999987665331111     123555666565


Q ss_pred             CCcEEEeeec------cCCCHHHHHHHHHHHHhhcCC
Q 029929          151 NIPYFETSAK------EGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       151 ~~~~~~~s~~------~~~~i~~~~~~i~~~~~~~~~  181 (185)
                       -.+..++.+      ....+.++++.|-+.+..+..
T Consensus       155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence             466666655      335688999998888887753

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.61  E-value=6.1e-15  Score=105.79  Aligned_cols=151  Identities=21%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC---------------------------------CCCccCcceeeeEEEEEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------------------------SNQYKATIGADFLTKEVQF   52 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   52 (185)
                      ...++.+..|+..-||||||-+|+...-                                 ......+++.+..+..+  
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--   81 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--   81 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--
Confidence            4568999999999999999999864311                                 00111123444444333  


Q ss_pred             CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC
Q 029929           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG  131 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  131 (185)
                      .-...++.+.|||||+.+...+......||++|+++|+-.. -.+...+ ...+...+      ++ .+++.+||+||.+
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLL------GIrhvvvAVNKmDLvd  153 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLL------GIRHVVVAVNKMDLVD  153 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHh------CCcEEEEEEeeecccc
Confidence            34456788999999999999999999999999999999632 1121111 01111111      33 4778889999998


Q ss_pred             CCc--eeecHHHHHHHHHhcC--CCcEEEeeeccCCCHH
Q 029929          132 GNS--RVVSEKKAKAWCASKG--NIPYFETSAKEGFNVE  166 (185)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~  166 (185)
                      .++  .+....+...|+..++  ...++++||..|+|+-
T Consensus       154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            632  3334455666777665  3578999999999863

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.59  E-value=5.6e-14  Score=102.72  Aligned_cols=108  Identities=13%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ++.+.|+||+|.......   ....+|.++++.+....+.....   ...+.         ...-++|+||+|+......
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~---------E~aDIiVVNKaDl~~~~~a  212 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIM---------ELADLIVINKADGDNKTAA  212 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhh---------hhhheEEeehhcccchhHH
Confidence            467899999996532222   46679999999775443333222   22122         2234899999999865333


Q ss_pred             eecHHHHHHHHHhc------CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          136 VVSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       136 ~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .....++.......      +..+++.+||.++.|++++++.|.+.+..
T Consensus       213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            33334444433321      22589999999999999999999997653

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.59  E-value=5.9e-14  Score=99.25  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--c--------cc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--S--------LG   74 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--~--------~~   74 (185)
                      ...++|+|+|.+|+|||||+|++++...... .....+..........  .+..+.+|||||-.+..  .        ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            4569999999999999999999998765422 1222222222222222  34678999999944331  0        11


Q ss_pred             cchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ..++.  ..|++++|..++....-..-...++.+...+.. .. -.++++|+||+|...+
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~i-~~~~ivV~T~~d~~~p  164 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-SI-WRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-hh-HhCEEEEEeCCccCCC
Confidence            22332  578888887666432111112333444433221 11 2369999999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.58  E-value=1e-13  Score=105.15  Aligned_cols=165  Identities=19%  Similarity=0.303  Sum_probs=118.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      .+..+++.|+|+.++|||.+++++.++.+......+....+....+...+....+.+.|.+-. ......... ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            456799999999999999999999999888766677777777777766666666777776653 222222222 679999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      +++||.+++.+++.+...+......      ..+|+++|++|+|+....  +...-+...++...+--+.+.+|.+. .+
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~--Q~~~iqpde~~~~~~i~~P~~~S~~~-~~  570 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVP--QRYSIQPDEFCRQLGLPPPIHISSKT-LS  570 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhh--hccCCChHHHHHhcCCCCCeeeccCC-CC
Confidence            9999999999998876554433211      378999999999997652  22222236777777655667777775 22


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      -.++|..|+.++...+
T Consensus       571 s~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  571 SNELFIKLATMAQYPH  586 (625)
T ss_pred             CchHHHHHHHhhhCCC
Confidence            2889999988876543

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.58  E-value=5.5e-14  Score=113.41  Aligned_cols=118  Identities=17%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------------ccCcceeeeEEE--EEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------------YKATIGADFLTK--EVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~   67 (185)
                      .+..+|+++|+.++|||||+.+|+.......                .....+......  .+.+.+..+.++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            4557899999999999999999975321100                001111111111  2233445678999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .++.......++.+|++|+|+|+........ ...+......       +.|.++++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~-------~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE-------RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc-------CCCeEEEEECchhhc
Confidence            9988888888999999999999886432222 2222222111       457899999999864

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.58  E-value=6.7e-14  Score=99.61  Aligned_cols=165  Identities=22%  Similarity=0.322  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC--CcEEEEEEecCCChhhhcccccchhcc---Cc-
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRG---AD-   82 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~---~d-   82 (185)
                      -+|+|+|..++||||||.+|.+..   ...+..+..+.+..+.-+  +...++.+|-+-|..-...+....+..   ++ 
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            489999999999999999998776   345556666655555433  234577889888866666665555432   33 


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCC-----------------------------------------------
Q 029929           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSD-----------------------------------------------  114 (185)
Q Consensus        83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  114 (185)
                      ++|++.|.++| .-++.+++|..-+.++.....                                               
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            67889999998 555667777766444322211                                               


Q ss_pred             ----------CCCCcEEEEEeCCCCCCC---------CceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          115 ----------PENFPFVVLGNKTDVDGG---------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       115 ----------~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                                +.++|+++|+||||....         ......+..++.|+.+++ +..+++|.++..|++-+..+|...
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHH
Confidence                      113399999999998431         123344556788888888 899999999999999999999887


Q ss_pred             Hh
Q 029929          176 AL  177 (185)
Q Consensus       176 ~~  177 (185)
                      ..
T Consensus       289 ~y  290 (473)
T KOG3905|consen  289 SY  290 (473)
T ss_pred             hc
Confidence            64

>cd00066 G-alpha G protein alpha subunit

Probab=99.57  E-value=1.1e-13  Score=101.40  Aligned_cols=126  Identities=13%  Similarity=0.145  Sum_probs=84.8

Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      ....+.+||++|+...+..|..++..++++|+|+|.++.+.       ...+...+..+...+......++|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            35678899999999999999999999999999999987311       12233333334444444344578999999999


Q ss_pred             CCCCC--------------CceeecHHHHHHHHHh----c-----CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          128 DVDGG--------------NSRVVSEKKAKAWCAS----K-----GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       128 Dl~~~--------------~~~~~~~~~~~~~~~~----~-----~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |+..+              .......+.+..+...    .     ..+-...++|.+..+++.+++.+.+.+..+.
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            96331              0111233333333321    1     1234567889999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.57  E-value=2.3e-14  Score=116.94  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=80.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CccCcceeeeEEEEEEE--------------CC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS--N--------------QYKATIGADFLTKEVQF--------------ED   54 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~   54 (185)
                      ..+..+|+|+|+.++|||||+++|+.....  .              ......+.........+              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            455689999999999999999999754321  0              01111122211122222              22


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      ..+.++++||||+.+|.......++.+|++|+|+|+...-.... ...+....    ..   ++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~----~~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GE---RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHH----HC---CCCEEEEEECCccc
Confidence            36788999999999999988899999999999999987433322 22222222    11   67999999999987

>TIGR00101 ureG urease accessory protein UreG

Probab=99.57  E-value=6.8e-14  Score=96.02  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      ....++++.|..-..... .  .-+|.+|.|+|+.+.++...  ....++          ...-++++||+|+.+..  .
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~--~  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMV--G  154 (199)
T ss_pred             CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccc--c
Confidence            455677888832111111 1  12688999999986544221  111111          11238999999998531  1


Q ss_pred             ecHHHHHHHHHh-cCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          137 VSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ...+...+.... .+..+++++|+++|.|+++++++|.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            222232333332 34589999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01882 BMS1 Bms1

Probab=99.56  E-value=1.4e-13  Score=96.41  Aligned_cols=142  Identities=18%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ..+..|+++|++|+|||||++.+.+...........+. .   .+ .......+.++||||.-   .......+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            34578999999999999999999865322111111111 1   11 11234577899999954   22233457899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc-eeecHHHHHH-HHH-hcCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNS-RVVSEKKAKA-WCA-SKGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~s~~~  161 (185)
                      +++|++....... ..++..+..    .   +.|. ++|+||.|+.+... .....+.+++ +.. .....+++++||++
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~----~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~  180 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV----H---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV  180 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH----c---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence            9999986433222 222222221    1   4574 45999999975321 1122233333 221 23457999999998


Q ss_pred             CC
Q 029929          162 GF  163 (185)
Q Consensus       162 ~~  163 (185)
                      +-
T Consensus       181 ~~  182 (225)
T cd01882         181 HG  182 (225)
T ss_pred             CC
Confidence            73

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.56  E-value=6.9e-14  Score=100.54  Aligned_cols=142  Identities=16%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------cCcceeeeEEEEEEECCcEEEEEEecCCChh--------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------   68 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------   68 (185)
                      ..|+|+|+|..|+|||||+|.|++.......          ..+...........-.+..+.++++||||-.        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4699999999999999999999987654321          1223334444445556677899999999911        


Q ss_pred             ----------hhcc--------cc-cchhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           69 ----------RFQS--------LG-VAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        69 ----------~~~~--------~~-~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                                .+..        .+ ...=...|+++|.++++.... ... ...++.+.    .    .+++|.|+.|+|
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls----~----~vNvIPvIaKaD  153 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRLS----K----RVNVIPVIAKAD  153 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHHT----T----TSEEEEEESTGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHhc----c----cccEEeEEeccc
Confidence                      0000        00 011135799999999875321 122 23334332    1    568999999999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      .....+....++.+..-....+ ++++...
T Consensus       154 ~lt~~el~~~k~~i~~~l~~~~-I~~f~f~  182 (281)
T PF00735_consen  154 TLTPEELQAFKQRIREDLEENN-IKIFDFP  182 (281)
T ss_dssp             GS-HHHHHHHHHHHHHHHHHTT---S----
T ss_pred             ccCHHHHHHHHHHHHHHHHHcC-ceeeccc
Confidence            8875545555555555555555 5555533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=5.6e-14  Score=109.16  Aligned_cols=160  Identities=20%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~~   70 (185)
                      +..=||++|+..+|||-|+..+.+.........+++..+....+...                -.-..+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            34568999999999999999998877665555555443333333221                11134678899999999


Q ss_pred             cccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceee-------
Q 029929           71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVV-------  137 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~-------  137 (185)
                      ..++......||.+|+|+|+.+   +.+.+.+.    .+.       ..+.|+||.+||+|....-   +...       
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk  622 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK  622 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHHH----HHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence            9999999999999999999987   44444332    111       1278999999999964320   0000       


Q ss_pred             --------cHH----HHHHHHHh-cC------------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          138 --------SEK----KAKAWCAS-KG------------NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       138 --------~~~----~~~~~~~~-~~------------~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                              ...    .+.+|... ++            .+.++++||..|+|+.+|+-+|++...
T Consensus       623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                    000    11122211 00            246889999999999999999988654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.55  E-value=4.1e-14  Score=94.04  Aligned_cols=149  Identities=20%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE---------------EEE--------------------E
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK---------------EVQ--------------------F   52 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~--------------------~   52 (185)
                      .++|.|.|++|||||+|+.+++..-.........+-+.++.               .+.                    .
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            48999999999999999999865432111111111111110               000                    0


Q ss_pred             CCcEEEEEEecCCChhhhcccccchhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC--CCcEEEEEeCCCC
Q 029929           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE--NFPFVVLGNKTDV  129 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl  129 (185)
                      ......+.|++.+|.   ... .....-.| .-|+|+|+...+..-              .+..|  ...=++|+||.|+
T Consensus        93 ~~~~~Dll~iEs~GN---L~~-~~sp~L~d~~~v~VidvteGe~~P--------------~K~gP~i~~aDllVInK~DL  154 (202)
T COG0378          93 DFPDLDLLFIESVGN---LVC-PFSPDLGDHLRVVVIDVTEGEDIP--------------RKGGPGIFKADLLVINKTDL  154 (202)
T ss_pred             cCCcCCEEEEecCcc---eec-ccCcchhhceEEEEEECCCCCCCc--------------ccCCCceeEeeEEEEehHHh
Confidence            001134555566661   111 11112234 788899988532111              00000  1134899999999


Q ss_pred             CCCCceeecHHHHHHHH-HhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          130 DGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      .+...+  ..+....-+ +..+..+|+++|+++|+|++++++|+....
T Consensus       155 a~~v~~--dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         155 APYVGA--DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHhCc--cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            886333  223333222 234569999999999999999999998754

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.54  E-value=9.2e-15  Score=102.75  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             EEEEecCCChhhhcccccchh--------ccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        58 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      ...++|||||-++...+....        ...-++++++|+....+... +..++..+.-+.+.    +.|.+.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence            567899999877655543332        34558889999875433222 22333332222222    679999999999


Q ss_pred             CCCCCceee------------------cHHHHHHHHH---hcCCC-cEEEeeeccCCCHHHHHHHHHHHH
Q 029929          129 VDGGNSRVV------------------SEKKAKAWCA---SKGNI-PYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       129 l~~~~~~~~------------------~~~~~~~~~~---~~~~~-~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      +.... .+.                  ......+++.   ..+.. +++++|+.+++|+.+++..+-+++
T Consensus       168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            98731 000                  0111112222   23344 899999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.54  E-value=6e-14  Score=114.36  Aligned_cols=117  Identities=18%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CccCcceeeeEEEEEEEC--------CcEEEEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQI   61 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~   61 (185)
                      ....+|+++|+.++|||||+++|+......                ....+.+.........+.        +..+.+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            345699999999999999999998632110                011111111111122222        22567899


Q ss_pred             ecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +||||+.++.......++.+|++|+|+|+...-.... ...+..+..    .   ++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----E---RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----c---CCCEEEEEEChhhh
Confidence            9999999998888889999999999999987433222 222333321    1   57999999999987

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-13  Score=101.72  Aligned_cols=154  Identities=20%  Similarity=0.091  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      -|+..|+-.-|||||+.++++....   +....+++.+.......  .....+.|+|.||++++-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~--~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK--LEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc--CCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4677899999999999999876533   33344454554444443  344588999999999999998888899999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      |+++++   +.+.+.+.     +.+.+      ++ ..++|+||+|..+....+...+++..... +.+.+++.+|+++|
T Consensus        80 vV~~deGl~~qtgEhL~-----iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g  147 (447)
T COG3276          80 VVAADEGLMAQTGEHLL-----ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTG  147 (447)
T ss_pred             EEeCccCcchhhHHHHH-----HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccC
Confidence            999975   33433321     22222      33 35999999999875422222233333333 44688999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 029929          163 FNVEAAFECIAKNAL  177 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~  177 (185)
                      +|++++.+.|.....
T Consensus       148 ~GI~~Lk~~l~~L~~  162 (447)
T COG3276         148 RGIEELKNELIDLLE  162 (447)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999999884

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=3.6e-13  Score=96.85  Aligned_cols=124  Identities=17%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-------cccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVA   76 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~   76 (185)
                      +...++|+++|.+|+||||++|++++..... ......+..........  .+..+.++||||..+...       ....
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            4567899999999999999999999876432 11122222222222222  346889999999443211       1111


Q ss_pred             hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        77 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ++  ...|+++||...+.....+.-...+..+...+.. .. -.+.|+++|+.|....
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~i-w~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DI-WRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hh-hccEEEEEECCccCCC
Confidence            11  2589999996654321111112333444433321 11 2368999999997643

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.53  E-value=7e-14  Score=99.42  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-h--------hhhcccccchh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-Q--------ERFQSLGVAFY   78 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-~--------~~~~~~~~~~~   78 (185)
                      ..-|.|+|.+|||||||+++|+.....+...-+.+.+++.......... .+.+.||.| .        ..|... ...+
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-LeeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence            3578999999999999999999887777777778888877777766554 566779999 1        122222 2234


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..+|+++.|.|+++|+.-+.....+.-+....-...+....++=|-||+|........+          .   .-.+.+|
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~---n~~v~is  322 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------K---NLDVGIS  322 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------c---CCccccc
Confidence            67999999999999987766666656554433221222223567789998765421111          1   2258899


Q ss_pred             eccCCCHHHHHHHHHHHHhh
Q 029929          159 AKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +.+|+|++++++.+-..+..
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999999988776653

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.52  E-value=1.1e-12  Score=96.65  Aligned_cols=83  Identities=24%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE---------------EEEEEecCCChhh----
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER----   69 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~----   69 (185)
                      ++|+++|.||+|||||+|++++........|+++.++....+.+.+..               ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999988555555776666665555554421               2588999999322    


Q ss_pred             ---hcccccchhccCcEEEEEEECC
Q 029929           70 ---FQSLGVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        70 ---~~~~~~~~~~~~d~~i~v~d~~   91 (185)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112233457899999999984

>smart00275 G_alpha G protein alpha subunit

Probab=99.51  E-value=4.3e-13  Score=99.18  Aligned_cols=125  Identities=13%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      ...+.+||.+|+...+..|..++..++++|+|+|.++-+       ....+...+..+...+......+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            456789999999999999999999999999999999632       1122333333344444444445789999999999


Q ss_pred             CCCCC-------------ceeecHHHHHHHHH----hc-C-----CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          129 VDGGN-------------SRVVSEKKAKAWCA----SK-G-----NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       129 l~~~~-------------~~~~~~~~~~~~~~----~~-~-----~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +..+.             ......+.+..+..    .. .     .+-.+.++|.+..++..+++.+...+..++
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            74310             00012222222221    11 1     134567889999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.49  E-value=3.3e-13  Score=99.50  Aligned_cols=164  Identities=13%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CC--ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccch-----
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQ--YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----   77 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----   77 (185)
                      ..+++|+|+|.+|+|||||||+|.+-... +.  .......+.....+.... ...+++||.||..........|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            45689999999999999999999753322 11  122222333344444332 2368999999954433222223     


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC--CC-------CCceeecHHHHHHHHHh
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV--DG-------GNSRVVSEKKAKAWCAS  148 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl--~~-------~~~~~~~~~~~~~~~~~  148 (185)
                      +...|.+|++.+..-.+.-   ..+...+.++       ++|+.+|-||+|.  .+       ...++...+.+++.+..
T Consensus       112 ~~~yD~fiii~s~rf~~nd---v~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTEND---VQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             GGG-SEEEEEESSS--HHH---HHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCCCchhh---HHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence            4568887776654322111   2333444433       6799999999995  11       11112223333333322


Q ss_pred             ----c--CCCcEEEeeeccC--CCHHHHHHHHHHHHhhcC
Q 029929          149 ----K--GNIPYFETSAKEG--FNVEAAFECIAKNALKNE  180 (185)
Q Consensus       149 ----~--~~~~~~~~s~~~~--~~i~~~~~~i~~~~~~~~  180 (185)
                          .  ...++|-+|+.+-  .++..+.+.|.+.++..+
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence                1  2347888998864  468888888887776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.48  E-value=1.1e-12  Score=95.63  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ++.+.|+||+|.....   ......+|.++++....   +.+.+......+.         .+|.++++||+|+......
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM---------EIADIYVVNKADGEGATNV  190 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence            5678899999944222   23456788888885444   3344433333332         5578999999999864221


Q ss_pred             eecHHH----HHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          136 VVSEKK----AKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       136 ~~~~~~----~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ......    ...+....  ...+++++|++++.|+++++++|.+...
T Consensus       191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            110111    11111111  1236999999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.48  E-value=1.2e-12  Score=90.67  Aligned_cols=154  Identities=16%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC------------CccCc-c-eeeeEEEEEE------------------EC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN------------QYKAT-I-GADFLTKEVQ------------------FE   53 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~------------~~~~~-~-~~~~~~~~~~------------------~~   53 (185)
                      ..+..|.++|+.|||||||++++.......            ..... . ..........                  ..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            357899999999999999999987541100            00000 0 0000000000                  00


Q ss_pred             CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  133 (185)
                      .....+.++||.|.-....   .+.-..+..+.|+|+.+.+...  ......+          ..|.++++||+|+....
T Consensus       100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~----------~~a~iiv~NK~Dl~~~~  164 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKYPGMF----------KEADLIVINKADLAEAV  164 (207)
T ss_pred             cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhhHhHH----------hhCCEEEEEHHHccccc
Confidence            0123566778877211111   1112345566788887543211  1111111          44789999999997531


Q ss_pred             ceeecHHHHHHHHHh-cCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          134 SRVVSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       134 ~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                        ............. .+.++++++|++++.|++++++++.+..
T Consensus       165 --~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       165 --GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             --hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence              1112222222222 3458999999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.48  E-value=1.8e-13  Score=92.96  Aligned_cols=166  Identities=20%  Similarity=0.294  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----cccchhccCc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGAD   82 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d   82 (185)
                      -||+++|..||||||+-..++.+... +...++.+.++......+-+. ..+.+||.+|++.+..     .....++..+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            58999999999999987766644432 344556666777777666543 5788999999885432     3456778999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC---CCcEEEeee
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETSA  159 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~  159 (185)
                      ++++|+|+...+-...+..+...+...+...  +...+.+.++|.|+...+.++...+.-........   .+..+++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            9999999998765555444333222222222  24578899999999987666555544443333222   256677776


Q ss_pred             ccCCCHHHHHHHHHHHHhh
Q 029929          160 KEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~  178 (185)
                      .+. .+-..+..+.....+
T Consensus       162 wDe-tl~KAWS~iv~~lip  179 (295)
T KOG3886|consen  162 WDE-TLYKAWSSIVYNLIP  179 (295)
T ss_pred             hhH-HHHHHHHHHHHhhCC
Confidence            643 334444455444443

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.48  E-value=2.5e-12  Score=98.06  Aligned_cols=168  Identities=22%  Similarity=0.341  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC--cEEEEEEecCCChhhhcccccchhcc---C-c
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQERFQSLGVAFYRG---A-D   82 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~---~-d   82 (185)
                      -.|+|+|..++|||||+.+|.+..   .+.++.+.+|....+.-++  ....+.+|.+.|...+..+....++.   . -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            589999999999999999987543   3456677777766654332  23468999998866666666555543   2 3


Q ss_pred             EEEEEEECCChhhH-HHHHHHHHHHHhh-------------------------cCC------------------------
Q 029929           83 CCVLVYDVNVMKSF-DNLNNWREEFLIQ-------------------------ASP------------------------  112 (185)
Q Consensus        83 ~~i~v~d~~~~~~~-~~~~~~~~~~~~~-------------------------~~~------------------------  112 (185)
                      ++|+|+|.+.|..+ +.+..|+..+..+                         ...                        
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            77889999987544 2334444332111                         000                        


Q ss_pred             ---------CCCCCCcEEEEEeCCCCCCC---------CceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          113 ---------SDPENFPFVVLGNKTDVDGG---------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       113 ---------~~~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                               ..+.++|++||++|+|....         .......+.++.++..++ +.++++|.+...+++-+..+|..
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHH
Confidence                     00124699999999997431         112344556777888887 89999999999999999999888


Q ss_pred             HHhhcC
Q 029929          175 NALKNE  180 (185)
Q Consensus       175 ~~~~~~  180 (185)
                      .+....
T Consensus       262 ~l~~~~  267 (472)
T PF05783_consen  262 RLYGFP  267 (472)
T ss_pred             HhccCC
Confidence            876554

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=8.3e-13  Score=97.43  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC----------------CC----CccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKF----------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~----------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      .-..++|.+|.+|||||-++|+--..                ..    ......+....++.+.++..+..++++|||||
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            34678999999999999999752111                00    11123456777888888888889999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ++|....-..+..+|.+++|+|+...-....     ..+.+.|+..   ++|++=++||.|....
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR---~iPI~TFiNKlDR~~r  148 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLR---DIPIFTFINKLDREGR  148 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhc---CCceEEEeeccccccC
Confidence            9998888888899999999999986322221     2223333333   8899999999996543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.44  E-value=1.4e-12  Score=87.48  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             EEEEecCCChh----hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           58 TLQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        58 ~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      .+.++||||..    ........+++.+|++|+|.++....+-.....+.+..    ...   ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~----~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML----DPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH----TTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh----cCC---CCeEEEEEcCC
Confidence            46899999943    23355677889999999999999855544433333333    222   33589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.43  E-value=5.2e-12  Score=93.52  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC----CCC------------CCccCc---ceeeeEE---EEEE---ECCcEEEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR----KFS------------NQYKAT---IGADFLT---KEVQ---FEDRLFTLQ   60 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~   60 (185)
                      ...+-|.|+|+.++|||||+++|.+.    ...            +...++   +++++..   ..+.   .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34588999999999999999999987    222            111222   2222222   1122   234557889


Q ss_pred             EecCCChhh--------hcc---------------------cccchhc-cCcEEEEEE-ECCC----hhhHHH-HHHHHH
Q 029929           61 IWDTAGQER--------FQS---------------------LGVAFYR-GADCCVLVY-DVNV----MKSFDN-LNNWRE  104 (185)
Q Consensus        61 ~~D~~g~~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~~----~~~~~~-~~~~~~  104 (185)
                      ++||+|-..        ...                     =....++ ++|..|+|. |.+-    ++.+.. -.++..
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999111        000                     0122344 899999998 7741    112222 245555


Q ss_pred             HHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--CCHHHHHHHHH
Q 029929          105 EFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIA  173 (185)
Q Consensus       105 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~~~~~i~  173 (185)
                      .+.+.       ++|+++++||+|-...    ...+....+...++ .+++.+|+..-  +.+..++..+.
T Consensus       175 eLk~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       175 ELKEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH
Confidence            55433       7899999999994322    13333445545566 78888887643  34555554443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.41  E-value=1.6e-11  Score=89.10  Aligned_cols=144  Identities=14%  Similarity=0.197  Sum_probs=91.3

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCcceeeeEEEEEEECCcEEEEEEecCCChh-----
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----   68 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----   68 (185)
                      ++...|+|+++|+.|+|||||+|+|++......          ..++.........+.-++....++++||||-.     
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            345679999999999999999999998743221          23444455555555556677889999999911     


Q ss_pred             -------------hhccc--------cc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929           69 -------------RFQSL--------GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (185)
Q Consensus        69 -------------~~~~~--------~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  125 (185)
                                   .+...        +.  ..=..+|+++|.+.++...--..=...+..+..        .+-+|-|+.
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~--------~vNlIPVI~  170 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK--------RVNLIPVIA  170 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc--------ccCeeeeee
Confidence                         11110        01  011358999999987642111110223333322        456899999


Q ss_pred             CCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929          126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus       126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      |+|..-..+.....+.+.+.....+ +++|.
T Consensus       171 KaD~lT~~El~~~K~~I~~~i~~~n-I~vf~  200 (373)
T COG5019         171 KADTLTDDELAEFKERIREDLEQYN-IPVFD  200 (373)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence            9999876666666666766666665 77763

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=7.2e-12  Score=88.29  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=106.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC---C-------------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR---K-------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ....||..+|+.+-|||||..+++.-   .             .+....  .+.++....+.++-.......+|+||+.+
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~--rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKA--RGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhh--cCceeccceeEEecCCceEEeccCCChHH
Confidence            35689999999999999999887531   1             112222  33444445555554445556779999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      +-..+.....+.|++|+|+++.+......-+..+        ....-++| +++++||+|+.+..+ .+.-..+.+.+..
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--------larqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--------LARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--------hhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            9999988999999999999999843332221111        11111666 556779999997432 2333445666666


Q ss_pred             hcC----CCcEEEeeeccC-C-------CHHHHHHHHHHHHhhcCC
Q 029929          148 SKG----NIPYFETSAKEG-F-------NVEAAFECIAKNALKNEP  181 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~~-~-------~i~~~~~~i~~~~~~~~~  181 (185)
                      .++    ..|++.-|+..- +       .+.+|++.+-..++...+
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per  205 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER  205 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence            554    467887777642 1       256777777666665543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-11  Score=90.51  Aligned_cols=130  Identities=15%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             EECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        51 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      .+.-....+.++|.+||...+.-|.+++.+++++|+|++.++-+       ....+..-+..+...+...--.+.++|++
T Consensus       189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF  268 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF  268 (354)
T ss_pred             EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence            33334467788999999999999999999999999999998622       22334444555666666655668899999


Q ss_pred             EeCCCCCCCC-------------ceeecHHHHHHHHHh--------c-CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          124 GNKTDVDGGN-------------SRVVSEKKAKAWCAS--------K-GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       124 ~nK~Dl~~~~-------------~~~~~~~~~~~~~~~--------~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +||.||..+-             .-....+.+..+...        . ..+-...+.|.+-.+++.+|+...+.+...+
T Consensus       269 LNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  269 LNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             eecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            9999984320             011223333332221        1 1123455688889999999999998887654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.40  E-value=3e-12  Score=90.71  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             hhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC  146 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  146 (185)
                      +++..+...+++++|++++|+|+.++. +++.+.+|+..+..       .++|+++|+||+||.+.  .....+....+ 
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~-   93 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIY-   93 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHH-
Confidence            556667777899999999999999887 88888888875532       26799999999999753  22222334333 


Q ss_pred             HhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          147 ASKGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       147 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      ...+ ++++++||++|.|++++++.+..
T Consensus        94 ~~~g-~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        94 RNIG-YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHCC-CeEEEEecCCchhHHHHHhhhcC
Confidence            3344 78999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.37  E-value=1e-10  Score=80.87  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh------hh-cccccchh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------RF-QSLGVAFY   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~-~~~~~~~~   78 (185)
                      +.--+|+++|-|.+|||||+..++..........+++.+.....+.+++.  .+++.|.||.-      .- ........
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence            34469999999999999999999987766666677778888888888774  56788999922      21 22344556


Q ss_pred             ccCcEEEEEEECCChhhH
Q 029929           79 RGADCCVLVYDVNVMKSF   96 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~   96 (185)
                      +.+|++++|.|++..+.-
T Consensus       138 rtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQ  155 (364)
T ss_pred             ecccEEEEEecCCcchhH
Confidence            789999999999875543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=9e-12  Score=98.94  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=83.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------------cCcceeeeEEEEEEECCc-EEEEEEecCCChh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KATIGADFLTKEVQFEDR-LFTLQIWDTAGQE   68 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~   68 (185)
                      .+..+|.++|+-.+|||||..+++-.......                ....+.+......+.... .+.++++|||||-
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            45689999999999999999998643221110                001223343443333334 4899999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  133 (185)
                      +|.......++-+|++++|+|+...-....-.-|.+ ..    ..   ++|.++++||+|....+
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~----~~---~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-AD----KY---GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hh----hc---CCCeEEEEECccccccC
Confidence            999999999999999999999987433332222222 22    22   78999999999987653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.35  E-value=6.5e-12  Score=89.84  Aligned_cols=57  Identities=18%  Similarity=0.081  Sum_probs=40.8

Q ss_pred             CCcEEEEEeCCCCCCCCceeecHHHHHHHH-HhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       117 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ..+-++|+||+|+....  ....+...... ...+..+++++|+++|+|++++++||.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~--~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYL--NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCccc--HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999997531  11233333333 33456899999999999999999999874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.34  E-value=1.3e-12  Score=91.01  Aligned_cols=152  Identities=18%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC----------CCccCcc----------------eeeeEEEEEEEC-------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------NQYKATI----------------GADFLTKEVQFE-------   53 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~-------   53 (185)
                      +-+.|.+.|+||+|||||++.|...-..          +.+.|.+                ........+.-.       
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            4578999999999999999998532110          0011111                112222222211       


Q ss_pred             -----------CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 029929           54 -----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV  122 (185)
Q Consensus        54 -----------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii  122 (185)
                                 ..++.+.+++|.|......   ....-+|.+++|.-+.-.+....++.-.-++            .=++
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi~  172 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADIF  172 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccEE
Confidence                       1246778889988332222   2345699999999887665555443322322            3499


Q ss_pred             EEeCCCCCCCCceeecHHHHHHHHHhc------CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          123 LGNKTDVDGGNSRVVSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      |+||+|....   .....+++......      +..|++.+||.++.|++++++.|.+..
T Consensus       173 vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  173 VVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            9999995542   23333444443321      135899999999999999999998743

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00053 DYNc Dynamin, GTPase

Probab=99.34  E-value=2.7e-11  Score=85.02  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=41.9

Q ss_pred             EEEEEecCCChhh-------------hcccccchhc-cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 029929           57 FTLQIWDTAGQER-------------FQSLGVAFYR-GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV  122 (185)
Q Consensus        57 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii  122 (185)
                      ..++++||||-..             ...+...+++ ..+++++|+|+...-.......+...+.    .   .+.|+++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~---~~~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----P---QGERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----H---cCCcEEE
Confidence            5688999999431             1223455666 4568889998865211111112222221    1   2669999


Q ss_pred             EEeCCCCCCC
Q 029929          123 LGNKTDVDGG  132 (185)
Q Consensus       123 v~nK~Dl~~~  132 (185)
                      |+||.|....
T Consensus       198 ViTK~D~~~~  207 (240)
T smart00053      198 VITKLDLMDE  207 (240)
T ss_pred             EEECCCCCCc
Confidence            9999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=6.3e-11  Score=86.58  Aligned_cols=145  Identities=17%  Similarity=0.295  Sum_probs=88.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------ccCcceeeeEEEEEEECCcEEEEEEecCCCh--------
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------   67 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------   67 (185)
                      +...|.++++|+.|.|||||+|+|+...+...         ...+.........+.-++....++++||||-        
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            45569999999999999999999987754321         1223333444444444566778899999991        


Q ss_pred             ----------hhhccc-------ccchh--ccCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929           68 ----------ERFQSL-------GVAFY--RGADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (185)
Q Consensus        68 ----------~~~~~~-------~~~~~--~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  126 (185)
                                +.+...       ....+  ..+|+++|.+..+..  ..++  ..++..+.        ..+.+|-|+.|
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~--------~~vNiIPVI~K  167 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLS--------KKVNLIPVIAK  167 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHh--------ccccccceeec
Confidence                      111110       01111  268999999987652  1111  22223222        15679999999


Q ss_pred             CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929          127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|.....+.....+.+.+-+...+ ++++.....
T Consensus       168 aD~lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~  200 (366)
T KOG2655|consen  168 ADTLTKDELNQFKKRIRQDIEEHN-IKVFDFPTD  200 (366)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcC-cceecCCCC
Confidence            998876555555555666555554 666554443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.34  E-value=5.8e-11  Score=81.50  Aligned_cols=148  Identities=16%  Similarity=0.218  Sum_probs=91.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC---------CccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------   69 (185)
                      .-.|+|+|+|..|.|||||+|.++......         ....|+........+.-.+...+++++||||-.+       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            346999999999999999999998654322         1112333333344445566778899999999111       


Q ss_pred             -------------------hcccccchh--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           70 -------------------FQSLGVAFY--RGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        70 -------------------~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                                         ....+...+  ..+|+++|.+..+.. ++.-+ ..+++.+.+        -+.++-|+.|+
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~--------vvNvvPVIaka  194 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE--------VVNVVPVIAKA  194 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh--------hheeeeeEeec
Confidence                               111111122  357899998887642 11111 223333322        23588899999


Q ss_pred             CCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      |-.--+++....+.+++-....+ +.+++--+.+-+
T Consensus       195 DtlTleEr~~FkqrI~~el~~~~-i~vYPq~~fded  229 (336)
T KOG1547|consen  195 DTLTLEERSAFKQRIRKELEKHG-IDVYPQDSFDED  229 (336)
T ss_pred             ccccHHHHHHHHHHHHHHHHhcC-cccccccccccc
Confidence            98766567777777777766665 677766555443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.34  E-value=2.2e-11  Score=77.44  Aligned_cols=114  Identities=30%  Similarity=0.378  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ++|+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997776654333 3322                           222334456778999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      ++..+.++++.+  |...+....    ..+.|.++++||.|+...  .....+...         +++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~----k~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGN----KSDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcC----CCCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence            999999888755  555443321    125688999999998543  122222222         34456778888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=8.8e-11  Score=85.77  Aligned_cols=84  Identities=23%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC----------------cEEEEEEecCCC----h
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------------RLFTLQIWDTAG----Q   67 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g----~   67 (185)
                      .+++.++|.||+|||||.|+++.........|+.+.++......+..                ....+.|+|.+|    .
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47999999999999999999999886666778877776665544321                124578899988    2


Q ss_pred             hhhccc---ccchhccCcEEEEEEECC
Q 029929           68 ERFQSL---GVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        68 ~~~~~~---~~~~~~~~d~~i~v~d~~   91 (185)
                      ..-..+   .-.-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            222333   333457899999999976

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.30  E-value=5.9e-11  Score=92.65  Aligned_cols=121  Identities=18%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-c-cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----------ccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-Y-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~   74 (185)
                      ..++|+|+|.+|+||||++|++++...... . .+.++ ..........  +..+.++||||.....          ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHH
Confidence            347899999999999999999998764322 2 12222 2211122223  3578899999943321          112


Q ss_pred             cchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ..++.  .+|++|+|..++.......-..++..+...+-..-  -..+|||+|+.|....
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence            22333  48999999887642221111234444444433211  1258999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.29  E-value=2.5e-11  Score=85.95  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-----------CCccCcce---------------eeeEEEEEE--------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-----------NQYKATIG---------------ADFLTKEVQ--------   51 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-----------~~~~~~~~---------------~~~~~~~~~--------   51 (185)
                      .+...|.+.|.||+|||||+..|...-..           +++..+.+               .......+.        
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            34578999999999999999998542110           11111110               111111111        


Q ss_pred             ----------ECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 029929           52 ----------FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV  121 (185)
Q Consensus        52 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  121 (185)
                                ++.-++.+.+++|.|......   ....-+|.+++|.-..-.+....++.   -+.+.         -=+
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEi---------aDi  193 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA---GIMEI---------ADI  193 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh---hhhhh---------hhe
Confidence                      122356788899988443322   23456999999887765555544433   23222         348


Q ss_pred             EEEeCCCCCCCCceeecHHHHHHHH-----HhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          122 VLGNKTDVDGGNSRVVSEKKAKAWC-----ASKGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       122 iv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      +|+||.|......-.........+.     ...+..|++.+||.+|+|+.++++.|.+...
T Consensus       194 ~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         194 IVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             eeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            9999999654321111111122222     1223568999999999999999999988654

>cd01900 YchF YchF subfamily

Probab=99.28  E-value=2e-11  Score=87.25  Aligned_cols=81  Identities=20%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh------
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------   69 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~------   69 (185)
                      |+++|.||+|||||+|++++........|+++.+.....+.+.+.               ...+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            578999999999999999998876666677776666666655543               13588999999321      


Q ss_pred             -hcccccchhccCcEEEEEEECC
Q 029929           70 -FQSLGVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        70 -~~~~~~~~~~~~d~~i~v~d~~   91 (185)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112233457899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.2e-11  Score=92.17  Aligned_cols=118  Identities=24%  Similarity=0.277  Sum_probs=82.6

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-----------------cceeeeEEEEE---EECCcEEEEEEec
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------------TIGADFLTKEV---QFEDRLFTLQIWD   63 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~D   63 (185)
                      ......+|.++|+-++|||+|+..|..+..+.....                 +.+........   ...+..+.++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            345678999999999999999999876554322111                 11111111111   1245678899999


Q ss_pred             CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      ||||-.|.......++.+|++++++|+...-++.. ++.++...    .   .+.|+++|+||.|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----Q---NRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----h---ccCcEEEEEehhHH
Confidence            99999999999999999999999999987655544 22222221    1   16799999999995

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.22  E-value=1.3e-10  Score=84.86  Aligned_cols=164  Identities=19%  Similarity=0.143  Sum_probs=100.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC--------------cceeeeEEEEEEECCc-----------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--------------TIGADFLTKEVQFEDR-----------------   55 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-----------------   55 (185)
                      ..+.|.+.|..+.|||||.-.|......+....              ..+.+.....+-+++.                 
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v  195 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV  195 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence            358899999999999999988765543322111              1223333333333221                 


Q ss_pred             ----EEEEEEecCCChhhhcccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           56 ----LFTLQIWDTAGQERFQSLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        56 ----~~~~~~~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                          ...+.|+||.|++.+.......  -.+.|..++++.+++.-+--. ...+.-.       .....|+++++||+|+
T Consensus       196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~-------~a~~lPviVvvTK~D~  267 (527)
T COG5258         196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA-------LAMELPVIVVVTKIDM  267 (527)
T ss_pred             hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh-------hhhcCCEEEEEEeccc
Confidence                2356789999998776543333  367999999999987433221 1111111       1116799999999999


Q ss_pred             CCCCceeecHHHHHHHHHh------------------------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          130 DGGNSRVVSEKKAKAWCAS------------------------KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      .+++..+...+++......                        .+-.|++.+|+.+|+|++-+.+. ...++.+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r  340 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR  340 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence            8875444444444433322                        11358999999999999655544 4444444

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=6.9e-12  Score=88.86  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ..+.|+|+||++-....+.....-.|++++++..+.    |.+.+.+    ..+.-+ .     =..++++-||+|+..+
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM-~-----LkhiiilQNKiDli~e  194 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM-K-----LKHIIILQNKIDLIKE  194 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh-h-----hceEEEEechhhhhhH
Confidence            356789999999887777666677899999998876    3333333    222111 1     1258889999999987


Q ss_pred             CceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          133 NSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +......+++..|.+..  ..+|++++||.-+++++-+.++|+..++-.
T Consensus       195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            76777778888888754  357999999999999999999999998754

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.3e-10  Score=82.04  Aligned_cols=157  Identities=22%  Similarity=0.271  Sum_probs=96.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------------cCc-------ceeeeEEEEEEEC---------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KAT-------IGADFLTKEVQFE---------   53 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------------~~~-------~~~~~~~~~~~~~---------   53 (185)
                      -..++++|+|...+|||||+-.|+........                ..+       .+.+-.-..+.|.         
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            35689999999999999999887654432110                001       1111111111111         


Q ss_pred             -CcEEEEEEecCCChhhhcccccchhcc--CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           54 -DRLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        54 -~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                       ...-.++|+|.+|+..+.....+.+..  .|.+++|++++.......  --.+...+          ++|++++++|+|
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL----------~iPfFvlvtK~D  314 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAAL----------NIPFFVLVTKMD  314 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHh----------CCCeEEEEEeec
Confidence             123467999999999888777666653  688999998876433222  11222222          889999999999


Q ss_pred             CCCCCceeecHHH----------------------HHHHHH---hcCCCcEEEeeeccCCCHHHHHHHH
Q 029929          129 VDGGNSRVVSEKK----------------------AKAWCA---SKGNIPYFETSAKEGFNVEAAFECI  172 (185)
Q Consensus       129 l~~~~~~~~~~~~----------------------~~~~~~---~~~~~~~~~~s~~~~~~i~~~~~~i  172 (185)
                      +......+...++                      ....++   ..+..|++.+|+..|+|++-+...|
T Consensus       315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            9875322222222                      222222   2234689999999999987665444

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=4.5e-10  Score=80.84  Aligned_cols=166  Identities=18%  Similarity=0.157  Sum_probs=104.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC----------CCC----CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      ....||.-+|+..-|||||--+++.-          ++.    .......+.++....+.|+-......-.|+||+.++-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            45689999999999999999887531          111    0111223344444444444444444456999999999


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCC-CceeecHHHHHHHHHhc
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGG-NSRVVSEKKAKAWCASK  149 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  149 (185)
                      ..+.....+.|++|+|+.+++......-+.++.  .++.      ++ .+++.+||.|++++ +-.+.-..+++++...+
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL--ArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~  203 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL--ARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF  203 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHHH--HHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999998444332222111  1111      33 47788899999954 33344455677777665


Q ss_pred             C----CCcEEEeeec---cCCC-------HHHHHHHHHHHHhhc
Q 029929          150 G----NIPYFETSAK---EGFN-------VEAAFECIAKNALKN  179 (185)
Q Consensus       150 ~----~~~~~~~s~~---~~~~-------i~~~~~~i~~~~~~~  179 (185)
                      +    ++|++.-||.   .|.+       +.++++.+-.+++..
T Consensus       204 gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P  247 (449)
T KOG0460|consen  204 GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP  247 (449)
T ss_pred             CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence            4    5789887665   4432       455555555555433

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=9.4e-10  Score=75.76  Aligned_cols=171  Identities=16%  Similarity=0.250  Sum_probs=103.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc---ccchhccCcEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGADCC   84 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~~   84 (185)
                      ..+|+++|...|||||+...++.+. .++.....+.+-....-.+.+.-+.+.+||.|||-.+..-   ....++++-++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            3679999999999999877666554 3322222222221222223334468899999997654332   34567899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cC----CCcEEE
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KG----NIPYFE  156 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~----~~~~~~  156 (185)
                      |+|+|+.+ +..+.+.++...+.+.  ..-++++.+=+.+.|.|-..++-+...+.++.+....    .+    ...++-
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            99999975 2333333333333222  2334577888999999987654444444444433321    11    133444


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      +|.. ...+-|.|..+++++.++-+..
T Consensus       183 TSIy-DHSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  183 TSIY-DHSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             eeec-chHHHHHHHHHHHHHhhhchhH
Confidence            5544 4569999999999988876544

>cd01859 MJ1464 MJ1464

Probab=99.11  E-value=7.5e-10  Score=73.37  Aligned_cols=95  Identities=21%  Similarity=0.136  Sum_probs=63.4

Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG  150 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (185)
                      +.+..+..+.+|++++|+|+.++..... ..+...+    ..   .+.|+++|+||+|+....  .  .+....+....+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~----~~---~~~p~iiv~NK~Dl~~~~--~--~~~~~~~~~~~~   70 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV----LE---LGKKLLIVLNKADLVPKE--V--LEKWKSIKESEG   70 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH----Hh---CCCcEEEEEEhHHhCCHH--H--HHHHHHHHHhCC
Confidence            3455667788999999999987643322 1111111    11   156999999999986421  1  111212223333


Q ss_pred             CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                       .+++++||+++.|++++++.|.+.++.
T Consensus        71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          71 -IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence             689999999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.09  E-value=5.3e-10  Score=78.41  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL   73 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~   73 (185)
                      +..+.++++.|..|+|||+|++.++..+..... .+..+.+.....+.+..   ...++|.||          ..++...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            356689999999999999999999876654322 22555555555555443   556779999          2233334


Q ss_pred             ccchhcc---CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----e-----ee-c
Q 029929           74 GVAFYRG---ADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----R-----VV-S  138 (185)
Q Consensus        74 ~~~~~~~---~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~-----~~-~  138 (185)
                      ...|+..   --.+++++|++.+-  .-.....|..+.          ++|..+|+||||......    +     .. .
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f  279 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF  279 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence            4444422   23456677776532  112224454443          889999999999754311    1     11 1


Q ss_pred             HHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          139 EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +..++.... . ..|.+.+|+.++.|+++++-.|.+.
T Consensus       280 ~~l~~~~f~-~-~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  280 QGLIRGVFL-V-DLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             hhcccccee-c-cCCceeeecccccCceeeeeehhhh
Confidence            111111111 1 2466789999999999888766654

>cd01855 YqeH YqeH

Probab=99.09  E-value=7.3e-10  Score=75.82  Aligned_cols=98  Identities=23%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC  146 (185)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  146 (185)
                      ...+...+..+++.+|++++|+|+.++...     |...+....     .+.|+++|+||+|+....   ...+....+.
T Consensus        21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~   87 (190)
T cd01855          21 EDFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWL   87 (190)
T ss_pred             HHHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHH
Confidence            333577788889999999999999875421     112221111     256999999999997532   1222222222


Q ss_pred             -----HhcC--CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          147 -----ASKG--NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       147 -----~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                           ...+  ..+++++||+++.|+++++++|.+.++
T Consensus        88 ~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          88 RAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence                 1121  236899999999999999999998775

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=99.07  E-value=8.7e-10  Score=80.59  Aligned_cols=159  Identities=19%  Similarity=0.199  Sum_probs=92.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC------------------CCCccCcceeee-----EEEEE------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF------------------SNQYKATIGADF-----LTKEV------------   50 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~-----~~~~~------------   50 (185)
                      -...+|.|+|...+|||||+-.|+....                  .....+..+.++     .-..+            
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            4568999999999999999966643221                  111111111111     00000            


Q ss_pred             -E-ECCcEEEEEEecCCChhhhcccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929           51 -Q-FEDRLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (185)
Q Consensus        51 -~-~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  126 (185)
                       . .++..-.++|+|+.|++.+........  +-.|..++++-++..--        ....+++.......+|+++|++|
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--------GmTKEHLgLALaL~VPVfvVVTK  282 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--------GMTKEHLGLALALHVPVFVVVTK  282 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--------eccHHhhhhhhhhcCcEEEEEEe
Confidence             0 122234578999999998876544333  45788888887764211        11111112222237899999999


Q ss_pred             CCCCCCCceeecHHHHHHHHHhcC-------------------------CCcEEEeeeccCCCHHHHHHHH
Q 029929          127 TDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFETSAKEGFNVEAAFECI  172 (185)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~s~~~~~~i~~~~~~i  172 (185)
                      +|+...+..++.-..+..+..+.+                         -+|+|.+|..+|.++.-+.-.|
T Consensus       283 IDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  283 IDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             eccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            999876433333333333333211                         3689999999999987554443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.01  E-value=6.6e-10  Score=84.12  Aligned_cols=122  Identities=15%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      ....+.++|.+|+...+.-|..++..++++|||+++++-+.       ...+..-+..+...+...-..+.|+++++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            44678899999999999999999999999999999875221       12233333444444444333478999999999


Q ss_pred             CCCC-----CC----------ce-eecHHHHHHHHHh-----c------CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          128 DVDG-----GN----------SR-VVSEKKAKAWCAS-----K------GNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       128 Dl~~-----~~----------~~-~~~~~~~~~~~~~-----~------~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      |+..     ..          .. ....+....+...     .      ..+.+..++|.+...++.+++.+.+.+
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9622     11          01 1233344433322     1      112355788888888888888877653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.01  E-value=3.1e-09  Score=77.16  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             ccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      .+..+.++|.+++|+|+.++. ++..+.+|+..+..       .++|+++|+||+|+...  .  ............+ .
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~--~--~~~~~~~~~~~~g-~  139 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDD--E--EEELELVEALALG-Y  139 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCCh--H--HHHHHHHHHHhCC-C
Confidence            344578999999999999987 77777777765542       16799999999999753  1  1112222233344 7


Q ss_pred             cEEEeeeccCCCHHHHHHHHHH
Q 029929          153 PYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      +++++||+++.|+++++.+|..
T Consensus       140 ~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         140 PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             eEEEEECCCCccHHHHHhhhcc
Confidence            9999999999999999887753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.00  E-value=4.6e-09  Score=77.95  Aligned_cols=89  Identities=17%  Similarity=0.112  Sum_probs=62.7

Q ss_pred             ccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      ....+.++|.+++|+|+.++. ....+..|+.....       .++|+++|+||+||....  +  .+.........+ +
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g-~  150 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG-Y  150 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC-C
Confidence            344578999999999998865 33345555554421       267999999999997431  1  122223333444 7


Q ss_pred             cEEEeeeccCCCHHHHHHHHHH
Q 029929          153 PYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      +++++||.++.|++++++.|..
T Consensus       151 ~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        151 QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             eEEEEEcCCCCCHHHHhhhhcc
Confidence            8999999999999999998864

>PRK00098 GTPase RsgA; Reviewed

Probab=98.96  E-value=4.7e-09  Score=76.65  Aligned_cols=86  Identities=20%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             hhccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ...++|++++|+|+.+++..... ..|+..+..       .++|+++|+||+|+...  .+ ..+.........+ .+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~v~  145 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YDVL  145 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-CeEE
Confidence            45889999999999887665443 556554432       16799999999999632  11 2223334444445 7899


Q ss_pred             EeeeccCCCHHHHHHHHH
Q 029929          156 ETSAKEGFNVEAAFECIA  173 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~  173 (185)
                      ++||+++.|++++++.+.
T Consensus       146 ~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        146 ELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEeCCCCccHHHHHhhcc
Confidence            999999999999998764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.95  E-value=3.5e-09  Score=80.63  Aligned_cols=163  Identities=26%  Similarity=0.442  Sum_probs=122.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+|+.++|..++|||.|+.+++...+.+...+..+  ...+++..++....+.+.|-+|...     ..|...+|++|+
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            358999999999999999999887776654333322  2245555677777888888888433     345677999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+..-+..+++....+...+..+..   ...+|.++++++.-......+........++......+.+++.++..|-++.
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~  178 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE  178 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence            9999999999887766666544333   3467888888887666555566667777777777766899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      .+|..+...+...
T Consensus       179 rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  179 RVFQEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=4.7e-09  Score=82.59  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      ...-+++++-+...|||||+.+|......              .....+.+.+.....+.+....+.++++|+|||-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            45678999999999999999999754321              1122234455555556665677899999999999999


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      +......+-+|++++++|+...-..... ..+++.+    ..   +...++|+||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~----~~---~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAW----IE---GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHH----Hc---cCceEEEEehhh
Confidence            9999999999999999999863332221 1111111    11   557899999999

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=8.2e-09  Score=75.34  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEEC------C------------------------
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFE------D------------------------   54 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~------~------------------------   54 (185)
                      ..-|+++|.-..||||+|+.|+..+++.   ...|++  +.-...+.-+      +                        
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            3568999999999999999999988863   223332  2212221110      0                        


Q ss_pred             ---------cEEEEEEecCCChh-----------hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929           55 ---------RLFTLQIWDTAGQE-----------RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD  114 (185)
Q Consensus        55 ---------~~~~~~~~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  114 (185)
                               .--.++++||||.-           .|.....=+...+|.++++||+..-+-.++....+..+..    . 
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~-  210 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H-  210 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C-
Confidence                     01257899999921           1222333456789999999998765444544555555432    2 


Q ss_pred             CCCCcEEEEEeCCCCCCC
Q 029929          115 PENFPFVVLGNKTDVDGG  132 (185)
Q Consensus       115 ~~~~p~iiv~nK~Dl~~~  132 (185)
                        .-.+-||+||+|.+..
T Consensus       211 --EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  211 --EDKIRVVLNKADQVDT  226 (532)
T ss_pred             --cceeEEEeccccccCH
Confidence              2367899999998764

>TIGR00092 GTP-binding protein YchF

Probab=98.95  E-value=4.5e-09  Score=77.85  Aligned_cols=83  Identities=22%  Similarity=0.055  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh---
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER---   69 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~---   69 (185)
                      +++.++|.|++|||||++++++... .....|.++.++....+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999887 5555577766666666665542               23678889999432   


Q ss_pred             ----hcccccchhccCcEEEEEEECC
Q 029929           70 ----FQSLGVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        70 ----~~~~~~~~~~~~d~~i~v~d~~   91 (185)
                          ........++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223344568899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.94  E-value=2.8e-09  Score=69.43  Aligned_cols=54  Identities=28%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      +++++|.+|+|||||+|++.+...... ....+.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999998775422 12222333344444443   5689999993

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.93  E-value=4.4e-09  Score=70.58  Aligned_cols=54  Identities=22%  Similarity=0.365  Sum_probs=38.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      .++++++|.+|+|||||+|++.+.... ....|+++..  ...+.++   ..+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeC---CCEEEEECcC
Confidence            489999999999999999999987653 3334444333  3333333   2577899999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.91  E-value=5.9e-09  Score=69.14  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ..++|+++|.+|+|||||+|++.+.... ....+..+  .....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999986643 22233332  2233333322   356889999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=1.5e-08  Score=75.20  Aligned_cols=88  Identities=15%  Similarity=0.092  Sum_probs=64.5

Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ..++|.+++|++.....++..+.+|+.....       .++|.++|+||+|+........ ...........+ ++++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~v  188 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLMV  188 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEEE
Confidence            4679999999999888888888888764431       2679999999999975421111 122222333445 799999


Q ss_pred             eeccCCCHHHHHHHHHH
Q 029929          158 SAKEGFNVEAAFECIAK  174 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~  174 (185)
                      ||+++.|+++++++|..
T Consensus       189 SA~tg~GideL~~~L~~  205 (347)
T PRK12288        189 SSHTGEGLEELEAALTG  205 (347)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999998865

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.90  E-value=7.6e-09  Score=74.62  Aligned_cols=87  Identities=23%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC---------------cEEEEEEecCCChh-
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAGQE-   68 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~-   68 (185)
                      ..+.+++.++|.|++|||||+|++++....+...|+.+.++....+.+..               ....++++|.+|.- 
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            35678999999999999999999999988888888888887776665432               23567899998822 


Q ss_pred             ---hhccc---ccchhccCcEEEEEEECC
Q 029929           69 ---RFQSL---GVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        69 ---~~~~~---~~~~~~~~d~~i~v~d~~   91 (185)
                         .-..+   ...-++.+|+++-|+++.
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEec
Confidence               22222   333457899999998875

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=2.6e-08  Score=76.60  Aligned_cols=141  Identities=14%  Similarity=0.163  Sum_probs=84.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ..+|-++|+||+|+||||||++|..+...... ......+      -..+....++|+++|.  +.. .+....+-+|++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp~--Dl~-~miDvaKIaDLV  137 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECPS--DLH-QMIDVAKIADLV  137 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeChH--HHH-HHHhHHHhhhee
Confidence            35688889999999999999998765322110 1111111      1345678999999994  222 233455679999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce-eecHHH--HHHHHHhcCCCcEEEeeecc
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKK--AKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~s~~~  161 (185)
                      ++++|.+-.-..+.+ .++.-+.    .++.+  .++-|+|..|+.....- ......  -+.+..-+..+++|.+|...
T Consensus       138 lLlIdgnfGfEMETm-EFLnil~----~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         138 LLLIDGNFGFEMETM-EFLNILI----SHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEEeccccCceehHH-HHHHHHh----hcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999999864333333 2333333    33222  37788999999764211 111111  12334445568899998775


Q ss_pred             C
Q 029929          162 G  162 (185)
Q Consensus       162 ~  162 (185)
                      +
T Consensus       211 n  211 (1077)
T COG5192         211 N  211 (1077)
T ss_pred             c
Confidence            3

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.89  E-value=5e-08  Score=68.11  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~   81 (185)
                      -+|.++|-|.+||||++..+.+...+.....+++.........+.+  .++++.|.||.-+       .........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999998776654445555555555555554  5677889999322       123344556789


Q ss_pred             cEEEEEEECCChhhHH
Q 029929           82 DCCVLVYDVNVMKSFD   97 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~   97 (185)
                      +++++|.|+..|-+-.
T Consensus       138 nli~~vld~~kp~~hk  153 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHK  153 (358)
T ss_pred             cEEEEEeeccCcccHH
Confidence            9999999988665443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.86  E-value=1.4e-08  Score=76.07  Aligned_cols=96  Identities=22%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHH---
Q 029929           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK---  143 (185)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---  143 (185)
                      .+++..+...+...++++++|+|+.+.+     ..|...+.+...     +.|+++|+||+|+.+..   ...+.+.   
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~---~~~~~~~~~l  116 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKS---VNLSKIKEWM  116 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCC---CCHHHHHHHH
Confidence            5677777888888999999999997643     223344443332     45999999999997532   2222332   


Q ss_pred             -HHHHhcCC--CcEEEeeeccCCCHHHHHHHHHHH
Q 029929          144 -AWCASKGN--IPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       144 -~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                       +++...+.  ..++.+||+++.|++++++.|.+.
T Consensus       117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence             33444441  258999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01856 YlqF YlqF

Probab=98.84  E-value=2.4e-08  Score=67.16  Aligned_cols=93  Identities=22%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (185)
                      ........++.+|++++|+|+.++...... .+...    ..     +.|+++|+||+|+.+.  ..  ......+....
T Consensus         9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~~-----~k~~ilVlNK~Dl~~~--~~--~~~~~~~~~~~   74 (171)
T cd01856           9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----LG-----NKPRIIVLNKADLADP--KK--TKKWLKYFESK   74 (171)
T ss_pred             HHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----hc-----CCCEEEEEehhhcCCh--HH--HHHHHHHHHhc
Confidence            344556778899999999999876543221 11111    11     4689999999999643  11  11121222222


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      . ..++.+|++++.|++++.+.+...++
T Consensus        75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          75 G-EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             C-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            2 56899999999999999999998764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=98.82  E-value=3.2e-08  Score=65.65  Aligned_cols=91  Identities=13%  Similarity=0.072  Sum_probs=56.8

Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ..+..+|++++|+|+.++..... ..+...+..    . ..+.|+++|+||+|+....   ........+..... ..++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~---~~~~~~~~~~~~~~-~~~~   73 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK----E-KPHKHLIFVLNKCDLVPTW---VTARWVKILSKEYP-TIAF   73 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HHHHHHHHh----c-cCCCCEEEEEEchhcCCHH---HHHHHHHHHhcCCc-EEEE
Confidence            35678999999999998643211 122222211    1 1147999999999997531   11122222222222 2357


Q ss_pred             EeeeccCCCHHHHHHHHHHHH
Q 029929          156 ETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ++||+.+.|++++++.|.+..
T Consensus        74 ~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          74 HASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EeeccccccHHHHHHHHHHHH
Confidence            899999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.8e-08  Score=77.67  Aligned_cols=118  Identities=22%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCccC-----------cceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-----NQYKA-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ..-+|.+.-+-.+||||+-++++.....     .....           ..+.+..+.-..+....+.+.++|||||-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3467888999999999999887533211     11011           1122232333333445788999999999999


Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .......++-.|++++|+|+...-......-| .++.++       ++|.+..+||+|....
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-------~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-------NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-------CCCeEEEEehhhhcCC
Confidence            99999999999999999998753222222222 222221       7899999999997554

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.81  E-value=9.2e-08  Score=73.36  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=81.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccC---------------------------------------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKA---------------------------------------------   39 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~---------------------------------------------   39 (185)
                      ....+|+|+|...+||||.+..+....+.+ ....                                             
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            445799999999999999999986543321 1000                                             


Q ss_pred             --------cceeeeEEEEEEECCcEE-EEEEecCCC-------------hhhhcccccchhccCcEEEEEEECCChhhHH
Q 029929           40 --------TIGADFLTKEVQFEDRLF-TLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFD   97 (185)
Q Consensus        40 --------~~~~~~~~~~~~~~~~~~-~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~   97 (185)
                              +.+.......+.+.+.+. ...++|+||             -+....+...+..+.+++|+|+--...+.- 
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE-  464 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE-  464 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh-
Confidence                    011222222333334333 567889999             233345567778899999999954432211 


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929           98 NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (185)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (185)
                        ......+...+.   +.+...|+|+||.|+...  ....+..+++...
T Consensus       465 --RSnVTDLVsq~D---P~GrRTIfVLTKVDlAEk--nlA~PdRI~kIle  507 (980)
T KOG0447|consen  465 --RSIVTDLVSQMD---PHGRRTIFVLTKVDLAEK--NVASPSRIQQIIE  507 (980)
T ss_pred             --hhhHHHHHHhcC---CCCCeeEEEEeecchhhh--ccCCHHHHHHHHh
Confidence              222233333333   347789999999999876  3455666776655

>cd01856 YlqF YlqF

Probab=98.80  E-value=2e-08  Score=67.53  Aligned_cols=56  Identities=20%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ..++++++|.+|+|||||++++.+..... ..+..+.+.....+.++   ..+.++||||
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG  169 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPG  169 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCC
Confidence            34799999999999999999999876532 12222233333334443   3567999999

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.80  E-value=1.4e-08  Score=69.49  Aligned_cols=53  Identities=19%  Similarity=0.373  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC---------CCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      .+++++|.+|+|||||+|+|.+...         .....++  .+.....+..+.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence            5899999999999999999997542         2223333  333344444433   467899999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=4.2e-09  Score=74.04  Aligned_cols=119  Identities=20%  Similarity=0.305  Sum_probs=72.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC----cceeeeEEEEEEECCcEEEEEEecCCCh--------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA----TIGADFLTKEVQFEDRLFTLQIWDTAGQ--------------   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------   67 (185)
                      .-.|+|+.+|..|.|||||+..|++.++...+.+    +...........-.+..+++++.||.|-              
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            4569999999999999999999999887644333    3333333333334566778999999991              


Q ss_pred             ----hhhccccc---------chh--ccCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           68 ----ERFQSLGV---------AFY--RGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        68 ----~~~~~~~~---------~~~--~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                          ..|....+         ..+  ...|+++|.+.++. .++..+.- .+..+.        .++.+|-++-|.|...
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld--------skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD--------SKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh--------hhhhhHHHHHHhhhhh
Confidence                11111000         011  34688899888764 23322211 111111        1556888889999776


Q ss_pred             CC
Q 029929          132 GN  133 (185)
Q Consensus       132 ~~  133 (185)
                      .+
T Consensus       191 K~  192 (406)
T KOG3859|consen  191 KE  192 (406)
T ss_pred             HH
Confidence            43

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.78  E-value=1.7e-07  Score=65.72  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=52.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC--CCCCCcc-CcceeeeEEEEEEEC-CcEEEEEEecCCChhhhc------cccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQ------SLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~------~~~~   75 (185)
                      ....-|.|+|++++|||||+|.+++.  .+..... ...+........... +....+.++||+|.....      ....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            45567899999999999999999988  5542221 112122222222221 234678999999943321      1122


Q ss_pred             chhcc--CcEEEEEEECCC
Q 029929           76 AFYRG--ADCCVLVYDVNV   92 (185)
Q Consensus        76 ~~~~~--~d~~i~v~d~~~   92 (185)
                      ..+..  ++++||..+...
T Consensus        85 ~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          85 FALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHhCEEEEeccCcc
Confidence            33333  888888887765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.77  E-value=6.5e-08  Score=64.03  Aligned_cols=84  Identities=18%  Similarity=0.080  Sum_probs=54.1

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      |++++|+|+.++.+....  ++..  .....   .++|+++|+||+|+....  + ..+....+ ......+++.+||++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~---~~~p~IiVlNK~Dl~~~~--~-~~~~~~~~-~~~~~~~ii~vSa~~   69 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER--VLIKE---KGKKLILVLNKADLVPKE--V-LRKWLAYL-RHSYPTIPFKISATN   69 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH--HHHhc---CCCCEEEEEechhcCCHH--H-HHHHHHHH-HhhCCceEEEEeccC
Confidence            789999999887655421  2221  11111   167999999999996431  1 11111122 222236789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAKNA  176 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (185)
                      +.|++++.+.|.+..
T Consensus        70 ~~gi~~L~~~i~~~~   84 (155)
T cd01849          70 GQGIEKKESAFTKQT   84 (155)
T ss_pred             CcChhhHHHHHHHHh
Confidence            999999999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.2e-07  Score=71.90  Aligned_cols=145  Identities=20%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee----------------------------------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF----------------------------------------   45 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~----------------------------------------   45 (185)
                      +...+|++.|..++||||++|+++..+..+.....++..+                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4557999999999999999999987665432222111000                                        


Q ss_pred             ----EEEEEEECCc----EEEEEEecCCChh---hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929           46 ----LTKEVQFEDR----LFTLQIWDTAGQE---RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD  114 (185)
Q Consensus        46 ----~~~~~~~~~~----~~~~~~~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  114 (185)
                          -...+.-++.    .-.+.++|.||.+   ....-...+...+|++|+|.++.+..+..+ ..++....    .. 
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs----~~-  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS----EE-  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh----cc-
Confidence                0000110110    0145788999933   333334455578999999999987555444 23333332    21 


Q ss_pred             CCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-------CCcEEEeeec
Q 029929          115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-------NIPYFETSAK  160 (185)
Q Consensus       115 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~  160 (185)
                        +..++|+.||.|....  ..+..+++......+.       .-.++++|++
T Consensus       261 --KpniFIlnnkwDasas--e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  261 --KPNIFILNNKWDASAS--EPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             --CCcEEEEechhhhhcc--cHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence              2235666688898764  2233333333322221       1247888865

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=5.4e-08  Score=70.42  Aligned_cols=101  Identities=22%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             CCChh-hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (185)
Q Consensus        64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  142 (185)
                      .|||- .........+..+|++++|+|+..+.+.+.. .+...+    .     +.|+++|+||+|+.+..  .  ....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-----~kp~IiVlNK~DL~~~~--~--~~~~   69 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-----NKPRLIVLNKADLADPA--V--TKQW   69 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-----CCCEEEEEEccccCCHH--H--HHHH
Confidence            45643 3344556778899999999999876554321 111111    1     46999999999996431  1  1122


Q ss_pred             HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      .......+ .+++.+|+.++.|++++++.+.+.+.+.
T Consensus        70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            22222233 5789999999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.74  E-value=4.2e-08  Score=70.95  Aligned_cols=56  Identities=23%  Similarity=0.452  Sum_probs=39.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ..++++++|.+|+|||||+|++.+.... ....++++..  ...+.+..   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999977643 3333333332  33344332   4679999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.74  E-value=5e-08  Score=64.62  Aligned_cols=56  Identities=25%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ...+++++|.+|+|||||++++.+.... ...++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999965532 2333444333323222222   578999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.73  E-value=6.1e-08  Score=70.52  Aligned_cols=56  Identities=21%  Similarity=0.446  Sum_probs=39.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ..++++++|.+|+|||||+|++.+... .....++.+..  ...+..+.   .+.++||||.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence            458999999999999999999998765 33334444333  33343332   4679999994

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.73  E-value=3.7e-08  Score=72.57  Aligned_cols=55  Identities=24%  Similarity=0.438  Sum_probs=40.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      .++++|+|-||+|||||||+|.+.... ...+..|.+.....+..+..   +.++||||
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPG  186 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPG  186 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCC
Confidence            478999999999999999999988763 22233344555555555543   67899999

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.71  E-value=2.5e-08  Score=65.60  Aligned_cols=60  Identities=27%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      -.++++|+.|+|||||+|+|......      .....+..++.....+..+...   .++||||-..+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            36789999999999999999976321      1111222223334444454433   477999955443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.71  E-value=1.9e-08  Score=69.12  Aligned_cols=126  Identities=11%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             ECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 029929           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFV  121 (185)
Q Consensus        52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  121 (185)
                      ++-....+.++|.+|+...+.-|.+++.+.-.+++++..+.          ....++...++..+...-...   +.++|
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~---nssVI  270 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVI  270 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc---CCceE
Confidence            33445567788999999989999999888877777665542          333444444445454433332   66899


Q ss_pred             EEEeCCCCCCCC--------------ceeecHHHHHHHHH----hcC--CCc---EEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          122 VLGNKTDVDGGN--------------SRVVSEKKAKAWCA----SKG--NIP---YFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       122 iv~nK~Dl~~~~--------------~~~~~~~~~~~~~~----~~~--~~~---~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++||.|+.++.              ......+..+.|+.    ..+  .-+   -.++.|.+.+|+.-+|..+...++.
T Consensus       271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            999999986531              12222333333332    221  111   2457788889999999988887776


Q ss_pred             cC
Q 029929          179 NE  180 (185)
Q Consensus       179 ~~  180 (185)
                      .+
T Consensus       351 ~~  352 (359)
T KOG0085|consen  351 LN  352 (359)
T ss_pred             hh
Confidence            54

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.70  E-value=1.9e-07  Score=68.59  Aligned_cols=96  Identities=18%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             EEEEEEecCCChhhhcc----cccch--------hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           56 LFTLQIWDTAGQERFQS----LGVAF--------YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      .+.+.++||||......    .....        -...+..++|+|++...  +.+.. ...+.+..       -+.-+|
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~giI  265 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLTGII  265 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCCEEE
Confidence            46788999999432111    11111        12467889999998532  22221 12222111       145789


Q ss_pred             EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      +||.|....      .-.+.......+ .|+.+++  +|++++++..
T Consensus       266 lTKlD~t~~------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        266 LTKLDGTAK------GGVVFAIADELG-IPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             EECCCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCChhhCcc
Confidence            999996543      223333344444 8999988  7888877643

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.69  E-value=1e-07  Score=63.23  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      ++++|..|+|||||++.+...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.68  E-value=8.5e-08  Score=81.63  Aligned_cols=116  Identities=21%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCc----cC--cceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccc
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFSNQY----KA--TIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA   76 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~   76 (185)
                      .+|+|++|+||||++..- +..++-..    ..  +.+.+. .....+.+   ..+++||+|..        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999876 33333111    01  111111 11122222   44688999921        11223444


Q ss_pred             hh---------ccCcEEEEEEECCC-----hhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           77 FY---------RGADCCVLVYDVNV-----MKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        77 ~~---------~~~d~~i~v~d~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ++         +..|++|+++|+.+     ++.... ...+...+.+..... ....|+.+++||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhcC
Confidence            33         34899999999865     221111 122222333222222 227899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.68  E-value=6.1e-08  Score=64.15  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=37.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ...+++++|.+|+|||||+|++.+... .....+.++.....  ....   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            457899999999999999999998653 23333444433332  2222   2577889998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.68  E-value=3.8e-08  Score=72.61  Aligned_cols=94  Identities=18%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             EEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           57 FTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      +.+.++||+|.....    ......  ....|.+++|+|+.... ..+.+    ..+....      + .--+++||.|.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence            468899999943211    111111  23578999999997532 22222    2222211      1 35788999998


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      .....      .+...+...+ .|+.+++  +|++++++..
T Consensus       292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence            65422      2223333344 7888888  7898887754

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.8e-08  Score=74.75  Aligned_cols=118  Identities=20%  Similarity=0.238  Sum_probs=88.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCC--------CCC--------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKF--------SNQ--------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ...+|.++....+||||.-.++.....        ...        .....+.+..+..+.++..++.+.++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            345899999999999999988753211        111        1112346667777888888999999999999999


Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      +-....+++-.|+++.|+|++..-....+--|.+.        ...++|-+.++||+|....
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence            99999999999999999999875444444444332        2237899999999998654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.65  E-value=7.1e-07  Score=64.33  Aligned_cols=96  Identities=15%  Similarity=0.030  Sum_probs=55.5

Q ss_pred             EEEEEEecCCChhhhcccc----cc---h-----hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           56 LFTLQIWDTAGQERFQSLG----VA---F-----YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      .+.+.++||||........    ..   .     -..+|.+++|+|++..  .+.+. ....+.+..      + +.-+|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~------~-~~g~I  223 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV------G-LTGII  223 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC------C-CCEEE
Confidence            4678899999944322111    11   1     1248999999999752  22222 123332221      1 45789


Q ss_pred             EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      +||.|.....      -.+.......+ .|+.+++  +|++++++..
T Consensus       224 lTKlDe~~~~------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       224 LTKLDGTAKG------GIILSIAYELK-LPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EEccCCCCCc------cHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence            9999976542      23333334444 7888888  7888777644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=4.7e-08  Score=72.12  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCC------------------CC-----------CccCcceeeeEEEEEEECCc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF------------------SN-----------QYKATIGADFLTKEVQFEDR   55 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~------------------~~-----------~~~~~~~~~~~~~~~~~~~~   55 (185)
                      +..+++++++|...+||||+-..+.....                  .+           .....-+-+.......+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            35578999999999999998765531100                  00           00001112222333333444


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHH--HHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWRE--EFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      ...+++.|+||+..+-..+.....++|..++|+++--.   -.|+.--+-..  .+.+...     -...|+++||+|-+
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMddP  230 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDDP  230 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEeccCC
Confidence            56788999999999998888888999999999988431   12222101111  1111111     23678999999977


Q ss_pred             CCCceeecHHHH----HHHHHhc-----CCCcEEEeeeccCCCHHHHHH
Q 029929          131 GGNSRVVSEKKA----KAWCASK-----GNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       131 ~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      ..+-....++++    ..|....     ....++++|..+|.++++...
T Consensus       231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            543333333333    3333322     246789999999999887553

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.62  E-value=1.4e-06  Score=66.22  Aligned_cols=67  Identities=18%  Similarity=0.103  Sum_probs=38.2

Q ss_pred             EEEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           56 LFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      .+.+.++||+|.....    ......  ....|.+++|+|+......   ......+.+..       .+.-+|+||.|-
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKlD~  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKLDG  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECccC
Confidence            4678999999933221    111111  2357889999998753222   22223332211       156788999997


Q ss_pred             CCC
Q 029929          130 DGG  132 (185)
Q Consensus       130 ~~~  132 (185)
                      ...
T Consensus       252 ~ar  254 (429)
T TIGR01425       252 HAK  254 (429)
T ss_pred             CCC
Confidence            643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.62  E-value=2.1e-07  Score=67.75  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CCChh-hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (185)
Q Consensus        64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  142 (185)
                      .|||- .........+..+|++++|+|+..+.+.+.  ..+...   ..     +.|+++|+||+|+.+.   . ..+..
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-----~kp~iiVlNK~DL~~~---~-~~~~~   72 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-----NKPRLLILNKSDLADP---E-VTKKW   72 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-----CCCEEEEEEchhcCCH---H-HHHHH
Confidence            56643 334445677889999999999987654332  111111   11     4699999999999642   1 11222


Q ss_pred             HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ..+....+ .+++.+|++++.|++++.+.+.+.+...
T Consensus        73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            22223333 6789999999999999999998887654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.62  E-value=1.5e-07  Score=61.26  Aligned_cols=77  Identities=19%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             cchhccCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      ...+..+|++++|+|+.++.+..  .+..++..   . .    .++|+++|+||+|+..+.    ......+.....+ .
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~----~~k~~iivlNK~DL~~~~----~~~~~~~~~~~~~-~   72 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-D----PRKKNILLLNKADLLTEE----QRKAWAEYFKKEG-I   72 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-c----CCCcEEEEEechhcCCHH----HHHHHHHHHHhcC-C
Confidence            34568899999999998876544  22222221   1 1    257999999999996431    1223334444444 6


Q ss_pred             cEEEeeeccCCC
Q 029929          153 PYFETSAKEGFN  164 (185)
Q Consensus       153 ~~~~~s~~~~~~  164 (185)
                      +++++||.++.+
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            899999998763

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.59  E-value=1.7e-07  Score=65.66  Aligned_cols=75  Identities=12%  Similarity=0.177  Sum_probs=52.8

Q ss_pred             CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHH---HHHHHHHhhcCCCCCCCCcEEE
Q 029929           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLN---NWREEFLIQASPSDPENFPFVV  122 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~p~ii  122 (185)
                      .-..+.++.+|.+||.+.+.-|.+++....++|+|+..+.-.       +-..++   .++..++.+-..   ..+.+|+
T Consensus       198 qVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL---~tisvIl  274 (379)
T KOG0099|consen  198 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL---RTISVIL  274 (379)
T ss_pred             eccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH---hhhheeE
Confidence            334567889999999999999999999999999999887421       112222   233333333222   2568999


Q ss_pred             EEeCCCCC
Q 029929          123 LGNKTDVD  130 (185)
Q Consensus       123 v~nK~Dl~  130 (185)
                      ++||.|+.
T Consensus       275 FLNKqDll  282 (379)
T KOG0099|consen  275 FLNKQDLL  282 (379)
T ss_pred             EecHHHHH
Confidence            99999974

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.56  E-value=2.8e-06  Score=63.67  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CccCcce---eeeEE-------EEEEE-CCcEEEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN--------------QYKATIG---ADFLT-------KEVQF-EDRLFTLQI   61 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~--------------~~~~~~~---~~~~~-------~~~~~-~~~~~~~~~   61 (185)
                      ..+=|.|+||..+||||||.+|......+              -+++..|   ++...       ..+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            34678999999999999999996432211              1111111   11111       12223 456788999


Q ss_pred             ecCCC--------h-----------hhhcccc----------cchh-ccC-cEEEEEEECCC----hhhHHHH-HHHHHH
Q 029929           62 WDTAG--------Q-----------ERFQSLG----------VAFY-RGA-DCCVLVYDVNV----MKSFDNL-NNWREE  105 (185)
Q Consensus        62 ~D~~g--------~-----------~~~~~~~----------~~~~-~~~-d~~i~v~d~~~----~~~~~~~-~~~~~~  105 (185)
                      +|+.|        +           ..|....          ...+ .++ =++++.-|.+-    ++.+..+ ++...+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99998        0           0011000          0001 122 25555556543    3444333 344444


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--CCHHHHHHHHH
Q 029929          106 FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIA  173 (185)
Q Consensus       106 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~~~~~i~  173 (185)
                      +...       ++|+++++|-.+-..    +...+...++...++ ++++++++..-  +.+..++..+.
T Consensus       176 Lk~i-------gKPFvillNs~~P~s----~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  176 LKEI-------GKPFVILLNSTKPYS----EETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHh-------CCCEEEEEeCCCCCC----HHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHH
Confidence            4433       779999999887443    345556666666776 89988887643  34544444443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.52  E-value=9e-07  Score=66.25  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ...++|.+++|+++..+-....+.+++.....    .   +++.++|+||+||.+.  .....+....+   ...++++.
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~---~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~  176 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE----S---GAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLA  176 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH----c---CCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEE
Confidence            35789999999999743333344555444332    2   6678999999999753  11111222222   23479999


Q ss_pred             eeeccCCCHHHHHHHHH
Q 029929          157 TSAKEGFNVEAAFECIA  173 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~  173 (185)
                      +|++++.|++++..+|.
T Consensus       177 vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        177 VSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EECCCCccHHHHHHHhh
Confidence            99999999999998874

>PRK12288 GTPase RsgA; Reviewed

Probab=98.51  E-value=3.2e-07  Score=68.22  Aligned_cols=58  Identities=24%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC-CCc-----cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFS-NQY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      ++|+|.+|+|||||+|+|.+.... ...     ..+..++.....+.+.+..   .++||||-..+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            689999999999999999876432 111     1111122233334444332   378999965544

>PRK13796 GTPase YqeH; Provisional

Probab=98.46  E-value=3.7e-07  Score=68.54  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC------CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      .+++++|.+|+|||||+|+|.....      .....|+++.+  ...+.+++.   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986431      12333443333  333444332   358899994

>PRK13796 GTPase YqeH; Provisional

Probab=98.46  E-value=1.6e-06  Score=65.13  Aligned_cols=93  Identities=24%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             hhcccccchhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH----H
Q 029929           69 RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA----K  143 (185)
Q Consensus        69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~  143 (185)
                      .+..... .+...+ ++++|+|+.+..     ..|...+.+...     +.|+++|+||+|+....   ...+.+    .
T Consensus        58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~---~~~~~i~~~l~  123 (365)
T PRK13796         58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKS---VKKNKVKNWLR  123 (365)
T ss_pred             HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCc---cCHHHHHHHHH
Confidence            4444333 334455 889999998733     223333433322     55899999999997532   222222    2


Q ss_pred             HHHHhcCC--CcEEEeeeccCCCHHHHHHHHHHH
Q 029929          144 AWCASKGN--IPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       144 ~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      .+....+.  ..++.+||+++.|++++++.|.+.
T Consensus       124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            33333331  268999999999999999999765

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.46  E-value=4.4e-07  Score=64.48  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|+|||||+|++.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            67899999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.46  E-value=5.7e-07  Score=67.48  Aligned_cols=54  Identities=26%  Similarity=0.419  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC------CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      .+++++|.+|+|||||+|++.+...      .....|.++..  ...+..++   .+.++||||-
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~  214 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGI  214 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCC
Confidence            4899999999999999999997542      22333443333  33444422   2458899993

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.45  E-value=3.3e-05  Score=50.54  Aligned_cols=148  Identities=19%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCC-C-------------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA-G-------------------   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g-------------------   66 (185)
                      ..++|.+.|+||+||||++.++.+.-....   ..-..+....+.-++...-+.+.|+. |                   
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            458999999999999999988875432211   11122333344444444455555554 2                   


Q ss_pred             --hhhhc----ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH
Q 029929           67 --QERFQ----SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK  140 (185)
Q Consensus        67 --~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  140 (185)
                        .+.+.    ......++.+|++|  +|---|-.+. ...+...+...+..    ..|++.++.+.+-.+      ..+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~----~kpliatlHrrsr~P------~v~  147 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKS----GKPLIATLHRRSRHP------LVQ  147 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcC----CCcEEEEEecccCCh------HHH
Confidence              11111    11222334456554  4544332221 13444444443322    568888887665311      122


Q ss_pred             HHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       141 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .+    ...+  .++-.  .+..|-+.+++.|...+..
T Consensus       148 ~i----k~~~--~v~v~--lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         148 RI----KKLG--GVYVF--LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             Hh----hhcC--CEEEE--EccchhhHHHHHHHHHhcc
Confidence            22    2233  22222  5666666888877776543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.45  E-value=4.3e-07  Score=67.61  Aligned_cols=54  Identities=22%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC-CCccCc-----ceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFS-NQYKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ++|+|++|+|||||+|+|...... ....+.     ..++.....+...+..   .++||||-
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~  234 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGF  234 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCc
Confidence            799999999999999999865422 111111     1122333344443333   47899994

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.39  E-value=1.9e-06  Score=58.58  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             EEEEecCCChhhhcccc---c---chhcc---CcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           58 TLQIWDTAGQERFQSLG---V---AFYRG---ADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        58 ~~~~~D~~g~~~~~~~~---~---~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      ...++|+|||-+.....   .   ..+.+   -=+++|++|..= -++..-+...+..+..+...    .+|.|=|++|+
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM  174 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM  174 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence            34578999965433221   1   11111   235667777643 33444445555555555544    67999999999


Q ss_pred             CCCCCCceeecHHH-------------------------------HHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          128 DVDGGNSRVVSEKK-------------------------------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       128 Dl~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ||...    ..+++                               +..+...++-..|++....+.+.++.++..|-.++
T Consensus       175 DLlk~----~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  175 DLLKD----KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HHhhh----hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            98754    11111                               11122233445678888888888888887776665


Q ss_pred             h
Q 029929          177 L  177 (185)
Q Consensus       177 ~  177 (185)
                      .
T Consensus       251 Q  251 (273)
T KOG1534|consen  251 Q  251 (273)
T ss_pred             H
Confidence            4

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.33  E-value=1.2e-06  Score=63.11  Aligned_cols=59  Identities=24%  Similarity=0.330  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      -.+++|+.|+|||||+|+|....      .......+..++.....+.+++.+.   ++||||-.++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            46789999999999999997532      1222223333445566666654443   67999955443

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=2.1e-06  Score=72.11  Aligned_cols=117  Identities=21%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC--CCcc--CcceeeeEEEEEEECCcEEEEEEecCCC----hh----hhcccccch-
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFS--NQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVAF-   77 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~~-   77 (185)
                      -+|+|++|+||||++..- +..++  ....  ...+........-+.+   ..+++||.|    ++    .....|..+ 
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            478999999999988543 22222  1100  0000110111122222   456789999    21    222334433 


Q ss_pred             --------hccCcEEEEEEECCC-----hhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           78 --------YRGADCCVLVYDVNV-----MKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        78 --------~~~~d~~i~v~d~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                              .+-.|++|+.+|+.+     +..-++ +......+.+... ...-..|+.+++||.|+...
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEeccccccc
Confidence                    245799999999865     111111 2222232333221 22226799999999999874

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.29  E-value=7.4e-06  Score=61.36  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.++++|++|+||||++.+|...
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.28  E-value=3.9e-06  Score=57.61  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=48.5

Q ss_pred             EEEEEecCCChhhhc----ccccchh--ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           57 FTLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      +.+.++||+|.....    .....+.  ...+-+++|++++.. +..+.+..++.    .+.       +-=+++||.|-
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~----~~~-------~~~lIlTKlDe  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE----AFG-------IDGLILTKLDE  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH----HSS-------TCEEEEESTTS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh----ccc-------CceEEEEeecC
Confidence            568899999933221    1122222  257789999999863 33333333322    221       23567999997


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ...      .-.+.......+ .|+-.++  +|+++
T Consensus       153 t~~------~G~~l~~~~~~~-~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  153 TAR------LGALLSLAYESG-LPISYIT--TGQRV  179 (196)
T ss_dssp             SST------THHHHHHHHHHT-SEEEEEE--SSSST
T ss_pred             CCC------cccceeHHHHhC-CCeEEEE--CCCCh
Confidence            653      233444444454 6777666  45554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.26  E-value=2.6e-06  Score=61.99  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC-cc-----CcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQ-YK-----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      -.++++|++|+|||||+|.|.+...... ..     .+...+.....+...+..   .++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence            4689999999999999999987643211 01     111122223334443222   47899997554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.26  E-value=1.3e-06  Score=66.73  Aligned_cols=86  Identities=20%  Similarity=0.080  Sum_probs=46.2

Q ss_pred             EEEEEecCCChhhhccc----cc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           57 FTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      ..+.++||+|.......    ..  ..+..+|.+++|+|++...   ........+....      + ..-+|+||.|-.
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l------~-i~gvIlTKlD~~  245 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV------G-IGGIIITKLDGT  245 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC------C-CCEEEEecccCC
Confidence            36789999994332211    11  1234688999999987632   2122223232111      1 235788999975


Q ss_pred             CCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929          131 GGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      ..      .-.+.......+ .|+.+++.
T Consensus       246 a~------~G~~ls~~~~~~-~Pi~fig~  267 (437)
T PRK00771        246 AK------GGGALSAVAETG-APIKFIGT  267 (437)
T ss_pred             Cc------ccHHHHHHHHHC-cCEEEEec
Confidence            43      223333444444 67766654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.24  E-value=1.2e-05  Score=54.11  Aligned_cols=67  Identities=24%  Similarity=0.098  Sum_probs=37.7

Q ss_pred             EEEEEEecCCChhhh----cccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           56 LFTLQIWDTAGQERF----QSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      .+.+.++|++|....    ........  ...+.+++|+|+......   ......+.+..      + ..-+++||.|.
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~------~-~~~viltk~D~  151 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL------G-ITGVILTKLDG  151 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC------C-CCEEEEECCcC
Confidence            345788999995322    11111111  348999999998753321   22333332222      2 24677899997


Q ss_pred             CCC
Q 029929          130 DGG  132 (185)
Q Consensus       130 ~~~  132 (185)
                      ...
T Consensus       152 ~~~  154 (173)
T cd03115         152 DAR  154 (173)
T ss_pred             CCC
Confidence            654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.23  E-value=4.1e-06  Score=56.74  Aligned_cols=87  Identities=16%  Similarity=0.091  Sum_probs=44.0

Q ss_pred             EEEEEecCCChhhhccc--ccch---hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           57 FTLQIWDTAGQERFQSL--GVAF---YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      ....++++.|.......  ....   .-..+.+|.|+|+.+-.........+.   .+...      .=++++||+|+.+
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~---~Qi~~------ADvIvlnK~D~~~  155 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR---EQIAF------ADVIVLNKIDLVS  155 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH---HHHCT-------SEEEEE-GGGHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh---hcchh------cCEEEEeccccCC
Confidence            45677788884433333  0111   124688999999976433333322222   22222      3389999999986


Q ss_pred             CCceeecHHHHHHHHHhc-CCCcEE
Q 029929          132 GNSRVVSEKKAKAWCASK-GNIPYF  155 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-~~~~~~  155 (185)
                      ..   ...+..++..+.. +.++++
T Consensus       156 ~~---~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  156 DE---QKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             HH-----HHHHHHHHHHH-TTSEEE
T ss_pred             hh---hHHHHHHHHHHHHCCCCEEe
Confidence            42   1224444444433 335554

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.22  E-value=3.3e-06  Score=61.83  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|+|||||+|+|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998764

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.22  E-value=3.2e-05  Score=60.20  Aligned_cols=91  Identities=23%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             EEEEEEecCCChhhhcccccc---hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVA---FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      .+.+.++||+|..........   .+  ......++|++.+.  +...+......+..        ..+.-+|+||.|..
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~--------~~~~gvILTKlDEt  497 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH--------AKPQGVVLTKLDET  497 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh--------hCCeEEEEecCcCc
Confidence            467889999994322211000   01  11234567777764  23333333333321        12567999999975


Q ss_pred             CCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ..      .-.+.......+ .++.+++  +|+.+
T Consensus       498 ~~------lG~aLsv~~~~~-LPI~yvt--~GQ~V  523 (559)
T PRK12727        498 GR------FGSALSVVVDHQ-MPITWVT--DGQRV  523 (559)
T ss_pred             cc------hhHHHHHHHHhC-CCEEEEe--CCCCc
Confidence            43      334444445554 6777776  44444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.21  E-value=1.8e-05  Score=51.90  Aligned_cols=58  Identities=22%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      .+.+.++||+|....   ...++..+|.++++....--+....+ +  ..+.         ...-++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~-k--~~~~---------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAI-K--AGIM---------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHh-h--hhHh---------hhcCEEEEeCCC
Confidence            467889999995422   23477889999998877732222211 1  1111         224589999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=4.5e-06  Score=63.78  Aligned_cols=119  Identities=17%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEE--E------------EC
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEV--Q------------FE   53 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~--~------------~~   53 (185)
                      ++.+..++.|+.+...|||||-.+|..+-..                +.....++..-.....  .            -+
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            4566778999999999999999998643211                1111111111111111  1            13


Q ss_pred             CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +..+.+.++|.||+-+|.+.....++-.|++++|+|.-+.-....---+.+.+.+        .+.-+++.||.|..
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRA  163 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHH
Confidence            4568899999999999999999999999999999998763222221112222321        33457889999953

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.19  E-value=4.2e-05  Score=58.66  Aligned_cols=91  Identities=18%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             EEEEEEecCCChhhhc----ccccchhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           56 LFTLQIWDTAGQERFQ----SLGVAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      .+.+.++||+|.....    .....++.   ...-+++|++++..  ...+......+    ...   + +--+++||.|
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f----~~~---~-~~~vI~TKlD  368 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF----SRL---P-LDGLIFTKLD  368 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh----CCC---C-CCEEEEeccc
Confidence            3577899999943221    12222333   23466788888642  22222333333    211   1 2368899999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      -...      .-.+..+....+ .|+.+++  +|+++
T Consensus       369 et~~------~G~i~~~~~~~~-lPv~yit--~Gq~V  396 (424)
T PRK05703        369 ETSS------LGSILSLLIESG-LPISYLT--NGQRV  396 (424)
T ss_pred             cccc------ccHHHHHHHHHC-CCEEEEe--CCCCC
Confidence            7543      224555555555 7777776  44543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.19  E-value=5.1e-05  Score=55.95  Aligned_cols=90  Identities=20%  Similarity=0.024  Sum_probs=49.4

Q ss_pred             EEEEEecCCChhhhcccccc--------hhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           57 FTLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      +...++++.|...-......        -.-..|.++-|+|+.+-.. .....   ..+..+...      -=+|++||.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~---~~~~~Qia~------AD~ivlNK~  155 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA---ELAEDQLAF------ADVIVLNKT  155 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH---HHHHHHHHh------CcEEEEecc
Confidence            45567788883222111111        1124688999999986322 22122   222222222      238999999


Q ss_pred             CCCCCCceeecHHHHHHHHHhc-CCCcEEEeee
Q 029929          128 DVDGGNSRVVSEKKAKAWCASK-GNIPYFETSA  159 (185)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~  159 (185)
                      |+....    ..+..+...... +.++++.++.
T Consensus       156 Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         156 DLVDAE----ELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             cCCCHH----HHHHHHHHHHHhCCCCeEEEccc
Confidence            999853    244444444443 4577888776

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.19  E-value=0.00013  Score=49.37  Aligned_cols=85  Identities=24%  Similarity=0.265  Sum_probs=54.4

Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  134 (185)
                      ..+.+.++|+|+....  .....+..+|.+++++..+.. +...+..+.+.+...       +.|+.+|+||+|....  
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~~--  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-------GIPVGVVINKYDLNDE--  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCcc--
Confidence            3567899999974322  233456889999999988743 444555555544321       4578899999986432  


Q ss_pred             eeecHHHHHHHHHhcCCCcEE
Q 029929          135 RVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~  155 (185)
                         ..++..++.+..+ .+++
T Consensus       159 ---~~~~~~~~~~~~~-~~vl  175 (179)
T cd03110         159 ---IAEEIEDYCEEEG-IPIL  175 (179)
T ss_pred             ---hHHHHHHHHHHcC-CCeE
Confidence               3445666666655 5554

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR00959 ffh signal recognition particle protein

Probab=98.17  E-value=1e-05  Score=61.82  Aligned_cols=87  Identities=23%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             EEEEEEecCCChhhhc----ccccc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           56 LFTLQIWDTAGQERFQ----SLGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      .+.+.++||+|.....    .....  ..-..|.+++|+|+...   ..+..+...+.....       ..-+|+||.|-
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~  251 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDG  251 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccC
Confidence            3568899999942211    11111  12357889999998743   333334444433221       23577999995


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      ....      -.+.......+ .|+.+++.
T Consensus       252 ~~~~------G~~lsi~~~~~-~PI~fi~~  274 (428)
T TIGR00959       252 DARG------GAALSVRSVTG-KPIKFIGV  274 (428)
T ss_pred             cccc------cHHHHHHHHHC-cCEEEEeC
Confidence            4321      12445555555 67766654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.17  E-value=1.2e-05  Score=61.49  Aligned_cols=87  Identities=23%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             EEEEEEecCCChhhh----cccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           56 LFTLQIWDTAGQERF----QSLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      .+.+.++||+|....    .......  .-..+.+++|+|+...   ..+......+....      + ..-+|+||.|-
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~  252 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDG  252 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccC
Confidence            356889999993321    1111111  1256788999998742   23333334443221      1 23577899996


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .....      .+.......+ .|+.+++.
T Consensus       253 ~~rgG------~alsi~~~~~-~PI~fig~  275 (433)
T PRK10867        253 DARGG------AALSIRAVTG-KPIKFIGT  275 (433)
T ss_pred             ccccc------HHHHHHHHHC-cCEEEEeC
Confidence            43321      2444444455 67766654

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.16  E-value=2.3e-05  Score=52.48  Aligned_cols=22  Identities=36%  Similarity=0.756  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|++.|++|+|||||++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=2.3e-05  Score=59.64  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.++++|+.|+||||++..|.+.
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999987653

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=6.3e-05  Score=56.64  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC---------CCccC------------cceeeeEEEEE--E----E---C-CcE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS---------NQYKA------------TIGADFLTKEV--Q----F---E-DRL   56 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~---------~~~~~------------~~~~~~~~~~~--~----~---~-~~~   56 (185)
                      +..|+++|+.|+||||++..|...-..         .+...            ..+.......-  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            357999999999999999988532110         00000            00011100000  0    0   0 013


Q ss_pred             EEEEEecCCChhhhcc----cccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +.+.++||+|......    .....+  ...+.+++|+|++..  ...+......+.    ..   + .-=+++||.|-.
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~----~~---~-idglI~TKLDET  390 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK----DI---H-IDGIVFTKFDET  390 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhc----CC---C-CCEEEEEcccCC
Confidence            5788999999432111    122222  235778899988632  122223333332    11   1 346889999976


Q ss_pred             CCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929          131 GGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..      .-.+.......+ .|+.+++
T Consensus       391 ~k------~G~iLni~~~~~-lPIsyit  411 (436)
T PRK11889        391 AS------SGELLKIPAVSS-APIVLMT  411 (436)
T ss_pred             CC------ccHHHHHHHHHC-cCEEEEe
Confidence            53      223444444454 6776666

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.11  E-value=9e-05  Score=54.74  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+|.|.-|||||||++++...
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            34567799999999999999854

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.05  E-value=7.2e-06  Score=62.62  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      .+.|.++|-||+||||+||+|.+.+.. .+..|+.+  ..-..+.+.   -.+.+-|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT--KHFQTi~ls---~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT--KHFQTIFLS---PSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc--ceeEEEEcC---CCceecCCCC
Confidence            589999999999999999999988744 23333333  333333322   2556779999

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.04  E-value=4.2e-05  Score=62.11  Aligned_cols=139  Identities=16%  Similarity=0.068  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCc--cCcceeeeEE----------------EEEEE-----------CCcEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQY--KATIGADFLT----------------KEVQF-----------EDRLFTL   59 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~-~~~--~~~~~~~~~~----------------~~~~~-----------~~~~~~~   59 (185)
                      -++++|+.|+||||++..|...... ...  ....+.+.+.                .....           .-..+.+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            5789999999999999988753211 000  0000000000                00000           0123467


Q ss_pred             EEecCCChhhh----cccccch--hccCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           60 QIWDTAGQERF----QSLGVAF--YRGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        60 ~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .++||+|....    .......  ....+-.++|+|++. .+.+..   ..+.+......     -+-=+|+||.|-...
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~---i~~~f~~~~~~-----~i~glIlTKLDEt~~  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE---VVHAYRHGAGE-----DVDGCIITKLDEATH  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH---HHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence            89999992211    1111111  123567889999874 233332   22333211000     133578999997653


Q ss_pred             CceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          133 NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                            .-.+..+....+ .|+.+++  +|+++
T Consensus       339 ------~G~iL~i~~~~~-lPI~yit--~GQ~V  362 (767)
T PRK14723        339 ------LGPALDTVIRHR-LPVHYVS--TGQKV  362 (767)
T ss_pred             ------ccHHHHHHHHHC-CCeEEEe--cCCCC
Confidence                  223444444454 7777776  45555

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=3.6e-05  Score=57.15  Aligned_cols=119  Identities=19%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc---------------------ceeeeEEEEEE-----------
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---------------------IGADFLTKEVQ-----------   51 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~---------------------~~~~~~~~~~~-----------   51 (185)
                      .+..+--|+++|..|+||||.+-.+....-...+...                     ....++.....           
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv  176 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV  176 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence            3455667899999999999988776422111110000                     01111111000           


Q ss_pred             --ECCcEEEEEEecCCChhh-hcccccc-----hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           52 --FEDRLFTLQIWDTAGQER-FQSLGVA-----FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        52 --~~~~~~~~~~~D~~g~~~-~~~~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                        +....+.+.++||+|... ..++...     -.-..|-+|+|.|++-....+.   ....+.+....       --++
T Consensus       177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~---Qa~aFk~~vdv-------g~vI  246 (483)
T KOG0780|consen  177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA---QARAFKETVDV-------GAVI  246 (483)
T ss_pred             HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH---HHHHHHHhhcc-------ceEE
Confidence              123467889999999221 1121111     1235899999999986443333   22333222111       2456


Q ss_pred             EeCCCCCCC
Q 029929          124 GNKTDVDGG  132 (185)
Q Consensus       124 ~nK~Dl~~~  132 (185)
                      +||.|-...
T Consensus       247 lTKlDGhak  255 (483)
T KOG0780|consen  247 LTKLDGHAK  255 (483)
T ss_pred             EEecccCCC
Confidence            788886543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=0.00014  Score=55.02  Aligned_cols=91  Identities=15%  Similarity=0.040  Sum_probs=49.0

Q ss_pred             EEEEEEecCCChhhhc----ccccchhcc--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           56 LFTLQIWDTAGQERFQ----SLGVAFYRG--AD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~----~~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      .+.+.++||+|.....    ......+..  .+ -.++|+|++..  ...+...+..+.    ..   + +-=+++||.|
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~----~~---~-~~~~I~TKlD  323 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS----PF---S-YKTVIFTKLD  323 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc----CC---C-CCEEEEEecc
Confidence            4678899999943221    112222222  23 57899999863  233333333331    11   1 3468899999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      -...      .-.+..+....+ .|+.+++  +|+++
T Consensus       324 et~~------~G~~l~~~~~~~-~Pi~yit--~Gq~v  351 (388)
T PRK12723        324 ETTC------VGNLISLIYEMR-KEVSYVT--DGQIV  351 (388)
T ss_pred             CCCc------chHHHHHHHHHC-CCEEEEe--CCCCC
Confidence            7653      233444444444 6776666  45555

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.02  E-value=5.3e-05  Score=54.85  Aligned_cols=107  Identities=14%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------------
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------------   66 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------------   66 (185)
                      ++.+..+++++|++|.|||+++++|........ .+.. .            ...+..+.+|.                 
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-E------------RIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-c------------cccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            345678999999999999999999997653321 1111 0            11222333333                 


Q ss_pred             -------hhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           67 -------QERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        67 -------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                             ...........++...+=++++|--+.   .+...-..++..+.......   ++|+|.++++-
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~  190 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTRE  190 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccHH
Confidence                   112223334566778888999996542   22333344555555444433   88999998764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.02  E-value=4.4e-05  Score=59.13  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++++|+.|+||||++..|..
T Consensus       258 Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        258 VFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            588999999999999999874

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.00  E-value=7.5e-05  Score=53.98  Aligned_cols=90  Identities=20%  Similarity=0.115  Sum_probs=61.9

Q ss_pred             cchhccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP  153 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      ..-+.+.|-+++|+.+.+|+--. .+.+++-..    ...   ++..+|++||+||........  +.........+ ++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~---gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g-y~  143 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAG---GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG-YP  143 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHc---CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC-ee
Confidence            33345578888888888865433 334444333    222   667788899999997633332  45555556666 99


Q ss_pred             EEEeeeccCCCHHHHHHHHHH
Q 029929          154 YFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      ++.+|++++.+++++.+++..
T Consensus       144 v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         144 VLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             EEEecCcCcccHHHHHHHhcC
Confidence            999999999999999988754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.00  E-value=4.3e-05  Score=40.92  Aligned_cols=45  Identities=24%  Similarity=0.202  Sum_probs=27.4

Q ss_pred             ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           79 RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      +-.++++|++|++...  +.+.-...++.+...+.     +.|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence            4478999999999743  33443456666766654     669999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.96  E-value=0.00011  Score=55.14  Aligned_cols=132  Identities=19%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc---ceeeeEEEE-----------------EEE----------CCcEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---IGADFLTKE-----------------VQF----------EDRLFT   58 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~---~~~~~~~~~-----------------~~~----------~~~~~~   58 (185)
                      -.|+++||+|+||||.+-.|.....-......   ++.+.+..-                 +-+          .-..+.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            46889999999999998887654331010111   111111000                 000          112457


Q ss_pred             EEEecCCChhhhcc----cccchhcc--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCC
Q 029929           59 LQIWDTAGQERFQS----LGVAFYRG--ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDG  131 (185)
Q Consensus        59 ~~~~D~~g~~~~~~----~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~  131 (185)
                      +.++||.|......    ....++..  ..-+.+|++++..  .+.+...+..+    ...     |+ =+++||.|-..
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f----~~~-----~i~~~I~TKlDET~  352 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF----SLF-----PIDGLIFTKLDETT  352 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh----ccC-----CcceeEEEcccccC
Confidence            88999999443322    22333332  3345677777742  23333333433    222     32 47799999654


Q ss_pred             CCceeecHHHHHHHHHhcCCCcEEEee
Q 029929          132 GNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      .      .-.+-......+ .|+-+++
T Consensus       353 s------~G~~~s~~~e~~-~PV~YvT  372 (407)
T COG1419         353 S------LGNLFSLMYETR-LPVSYVT  372 (407)
T ss_pred             c------hhHHHHHHHHhC-CCeEEEe
Confidence            3      333334444443 5666665

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.95  E-value=5.9e-05  Score=46.26  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           11 VIILG-DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        11 i~viG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      |.+.| ..|+||||+...+...-... ..+..       .+..+ ..+.+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~vl-------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-GKRVL-------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-CCcEE-------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 55899999887765332111 11111       11111 11678899999954332  2266778999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 029929           90 VNVMKSFDNLNNWRE  104 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~  104 (185)
                      .+. .+...+..+.+
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            863 45555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK13695 putative NTPase; Provisional

Probab=97.94  E-value=0.00096  Score=44.97  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+++|++|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999986543

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.94  E-value=1.4e-05  Score=57.46  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=37.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ...++++|+|.||+|||||+|++......      ....++.+..... .+.+.... .+.++||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCC
Confidence            45689999999999999999998643322      2333333332221 23333322 466789999

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=7.8e-05  Score=55.90  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -.++++|+.|+||||++..+..
T Consensus       207 ~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        207 RIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999988753

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=4.9e-05  Score=57.70  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      .-++++|++||||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999988864

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.88  E-value=1.5e-05  Score=59.12  Aligned_cols=56  Identities=29%  Similarity=0.459  Sum_probs=39.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   66 (185)
                      ..+++.|+|-||+||||+||+|....... .....|.+.....+..+.   .+.++|.||
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCc
Confidence            45899999999999999999999877642 123333333344444332   667889999

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.87  E-value=1.5e-05  Score=50.24  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999875

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.86  E-value=0.00025  Score=55.76  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~   33 (185)
                      +++.||+||||||.++.|.....
T Consensus        48 LlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45679999999999999886543

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.85  E-value=0.00033  Score=45.46  Aligned_cols=106  Identities=19%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCC
Q 029929           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   92 (185)
                      .-|..|+||||+.-.+...-.... ..+.-.+...   ......+.+.++|+|+...  ......+..+|.++++.+.+.
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence            457889999998766543211000 0011001000   0001116788999988432  223457788999999998874


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           93 MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                       .+...+...++.+....     ...++.+|+|+.+-.
T Consensus        79 -~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYALIKKLAKQL-----RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCH
Confidence             33444344444443321     134678999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.85  E-value=3.1e-05  Score=53.72  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=17.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHH
Q 029929            8 LLKVIILGDSGVGKTSLMNQY   28 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l   28 (185)
                      ++--+|+|||||||||..+.+
T Consensus         2 ~fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    2 PFGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             CcceEEEcCCCCCccchhhhH
Confidence            467789999999999988764

>PRK08118 topology modulation protein; Reviewed

Probab=97.85  E-value=1.7e-05  Score=53.17  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+|+|+|++|||||||...|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998653

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.81  E-value=1.8e-05  Score=53.46  Aligned_cols=22  Identities=32%  Similarity=0.782  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+|+|++||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999877

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.78  E-value=0.00087  Score=50.12  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|.|--|||||||++.+...
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            577899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.78  E-value=3.1e-05  Score=42.51  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+|.|+.|||||||+.++.--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999997643

>PRK07261 topology modulation protein; Provisional

Probab=97.78  E-value=2.5e-05  Score=52.58  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+|+|++|||||||.+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.76  E-value=3.3e-05  Score=54.16  Aligned_cols=22  Identities=41%  Similarity=0.643  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |.++|++|||||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999988765

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.75  E-value=2.8e-05  Score=50.53  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+++|++|||||||++.+....
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            6899999999999999998554

...

>PF05729 NACHT: NACHT domain

Probab=97.74  E-value=0.0001  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      ++|.|++|+||||++..+...-
T Consensus         3 l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6789999999999999987543

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.72  E-value=0.0004  Score=50.05  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC---------CCccC--------c--ceeeeEEEEEEE------------CCcEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS---------NQYKA--------T--IGADFLTKEVQF------------EDRLF   57 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~---------~~~~~--------~--~~~~~~~~~~~~------------~~~~~   57 (185)
                      -+++++|+.|+||||++..+...-..         .....        .  ....+......-            ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999877543110         00000        0  001111111000            01245


Q ss_pred             EEEEecCCChhhhc----ccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           58 TLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        58 ~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .+.++||+|.....    ......+  ...+-+++|+|++..  ...+..+...+.    ..   + +-=+++||.|-..
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~----~~---~-~~~~I~TKlDet~  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK----DI---H-IDGIVFTKFDETA  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC----CC---C-CCEEEEEeecCCC
Confidence            78899999944211    1122222  245678999998732  222233334332    11   1 3468899999765


Q ss_pred             CCceeecHHHHHHHHHhcCCCcEEEee
Q 029929          132 GNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      .      .-.+.......+ .|+.+++
T Consensus       226 ~------~G~~l~~~~~~~-~Pi~~it  245 (270)
T PRK06731        226 S------SGELLKIPAVSS-APIVLMT  245 (270)
T ss_pred             C------ccHHHHHHHHHC-cCEEEEe
Confidence            3      223344444444 6777766

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.72  E-value=0.00045  Score=44.55  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.+++.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.69  E-value=0.00044  Score=41.44  Aligned_cols=69  Identities=20%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-ccchhccCcEEEEEEE
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD   89 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   89 (185)
                      +++.|..|+||||+...+...--... ..       .  ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KR-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-Ce-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            57889999999999988765431111 01       1  1111    6778899985433321 1345567999999998


Q ss_pred             CCCh
Q 029929           90 VNVM   93 (185)
Q Consensus        90 ~~~~   93 (185)
                      .+..
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8753

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.68  E-value=5.1e-05  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |++.|++||||||+.+.+...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999988663

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.68  E-value=2.3e-05  Score=58.35  Aligned_cols=83  Identities=19%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhh--cccccchhccC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLGVAFYRGA   81 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~~~~~~   81 (185)
                      +...+.|.++|.||+||||+||+|-..+... .+.++.+     +.+.|--....+-++|+||.--.  .+.....+   
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET-----KVWQYItLmkrIfLIDcPGvVyps~dset~ivL---  375 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET-----KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---  375 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc-----hHHHHHHHHhceeEecCCCccCCCCCchHHHHh---
Confidence            3456899999999999999999999887652 2233321     11222222345668899993211  22222222   


Q ss_pred             cEEEEEEECCChhh
Q 029929           82 DCCVLVYDVNVMKS   95 (185)
Q Consensus        82 d~~i~v~d~~~~~~   95 (185)
                      -+++=|=.+.+|+.
T Consensus       376 kGvVRVenv~~pe~  389 (572)
T KOG2423|consen  376 KGVVRVENVKNPED  389 (572)
T ss_pred             hceeeeeecCCHHH
Confidence            34555666666553

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.67  E-value=5.5e-05  Score=51.98  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++||.|||||||++.+-.-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            57899999999999999887655

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.65  E-value=3.4e-05  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999866

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.64  E-value=6.2e-05  Score=52.44  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999887765

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.59  E-value=6.7e-05  Score=52.86  Aligned_cols=27  Identities=30%  Similarity=0.572  Sum_probs=23.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..+++++|+|++|||||+|+..++...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            456899999999999999999987553

This is thought to be an ATPase involved in viral DNA packaging [].

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.59  E-value=6.3e-05  Score=48.50  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            67899999999999999888765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.58  E-value=0.00047  Score=44.17  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK06217 hypothetical protein; Validated

Probab=97.57  E-value=7.3e-05  Score=50.87  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.56  E-value=8.2e-05  Score=47.46  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.56  E-value=6.9e-05  Score=48.37  Aligned_cols=26  Identities=23%  Similarity=0.546  Sum_probs=22.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +...+|+|.|.||+|||||..++...
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            45689999999999999999998754

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.54  E-value=5.6e-05  Score=50.71  Aligned_cols=24  Identities=33%  Similarity=0.678  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .=+++.||.|+||||++++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            346888999999999999999876

>PRK03839 putative kinase; Provisional

Probab=97.53  E-value=8.2e-05  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998765

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.53  E-value=9.9e-05  Score=54.54  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      ++++||.|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6889999999999999998754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.53  E-value=0.00012  Score=50.87  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+.|+|.|++|||||||.+.+...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998765

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.53  E-value=9.9e-05  Score=47.30  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS   34 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~   34 (185)
                      -.++++|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            47899999999999999999876544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.53  E-value=0.00075  Score=47.07  Aligned_cols=48  Identities=23%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      ...+.+|.+|+|+|.+- +++..+++..+..    ...+  -.++.+|+||.|-.
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~----~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELA----EELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHHHHHH----HHhC--CceEEEEEeeccch
Confidence            34578999999999984 3444444433322    2221  15899999999843

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.52  E-value=0.00011  Score=47.79  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .|+|+|+.|||||||++.|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999987653

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.00085  Score=47.23  Aligned_cols=113  Identities=21%  Similarity=0.396  Sum_probs=66.9

Q ss_pred             eeEEEEEcCCCC--CHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEE----EEEEecCCChhhhcccccchhccC
Q 029929            8 LLKVIILGDSGV--GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLF----TLQIWDTAGQERFQSLGVAFYRGA   81 (185)
Q Consensus         8 ~~~i~viG~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~   81 (185)
                      ...++|+|..|+  ||.+|+.+|....+.....+.....+...  +++++.|    .+.+..... +.+.- ........
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicd-e~~lp-n~~~a~pl   79 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICD-EKFLP-NAEIAEPL   79 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccc-hhccC-Ccccccce
Confidence            357899999998  99999999998887755444443333322  2333322    222221111 11111 11122345


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG  131 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  131 (185)
                      .+++++||.+....+..++.|+...       ..... -++.++||.|.+.
T Consensus        80 ~a~vmvfdlse~s~l~alqdwl~ht-------dinsfdillcignkvdrvp  123 (418)
T KOG4273|consen   80 QAFVMVFDLSEKSGLDALQDWLPHT-------DINSFDILLCIGNKVDRVP  123 (418)
T ss_pred             eeEEEEEeccchhhhHHHHhhcccc-------ccccchhheeccccccccc
Confidence            6889999999988888888887632       11122 2456779999654

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.51  E-value=0.0001  Score=46.87  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

...

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.51  E-value=0.00023  Score=53.84  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHH
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~   29 (185)
                      ..+..|+++|..||||||.+-.|.
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA  121 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLA  121 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHH
Confidence            346789999999999999887764

>PRK14530 adenylate kinase; Provisional

Probab=97.51  E-value=0.00011  Score=51.40  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+|+|++||||||+.+.|...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998644

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.49  E-value=0.00011  Score=50.13  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|++|||||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68899999999999999997654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.49  E-value=0.00011  Score=47.54  Aligned_cols=21  Identities=33%  Similarity=0.793  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.49  E-value=0.00011  Score=50.07  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.++++|++|||||||++.+.+.-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            478999999999999999998754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.49  E-value=0.00011  Score=45.15  Aligned_cols=20  Identities=50%  Similarity=0.810  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~   29 (185)
                      .++++|++|||||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57899999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.48  E-value=0.00042  Score=46.64  Aligned_cols=45  Identities=22%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |++++|+|+.++.+... ..+...+.  ...   .+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~---~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAG---GNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hcc---CCCCEEEEEehhhcCCH
Confidence            78999999987643321 12222211  111   15699999999999753

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.48  E-value=0.00011  Score=49.73  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|++|||||||++.+....
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999987753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=8.8e-05  Score=50.95  Aligned_cols=20  Identities=30%  Similarity=0.586  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 029929           11 VIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~   30 (185)
                      .+++||.|||||||++.|-.
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            47899999999999987743

>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00011  Score=54.57  Aligned_cols=128  Identities=18%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhC-------CCC-------------------CCccCcceeeeEEEEEEECCcEEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNR-------KFS-------------------NQYKATIGADFLTKEVQFEDRLFT   58 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~-------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (185)
                      ....++|.|+|...|||||..-..++.       .+.                   .......+..............+.
T Consensus         4 ~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~   83 (391)
T KOG0052|consen    4 EKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYY   83 (391)
T ss_pred             cccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEE
Confidence            345699999999999999965321100       000                   000111122344444455667788


Q ss_pred             EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC-CCcEEEEEeCCCCCCCC
Q 029929           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE-NFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~  133 (185)
                      ++++|.||+..+.........++|+.++++.+.. .-|+.-.....+...++...... -.++++.+||+|.....
T Consensus        84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~-gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~  158 (391)
T KOG0052|consen   84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT-GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP  158 (391)
T ss_pred             EEEecCCCCCceeeeEEeeEeeeceeEEEEeeec-cceeeeccccchhhhhhhhhccccceeeeEEeecccccCCC
Confidence            9999999999999888888999999999888832 22333333334444444443333 34677888999987643

>PRK13949 shikimate kinase; Provisional

Probab=97.47  E-value=0.00013  Score=49.02  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+|+|++||||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.47  E-value=0.00011  Score=51.65  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+++|+|+|++||||||+...|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.47  E-value=0.00065  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+|.|++||||||+++++...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.47  E-value=0.00011  Score=52.34  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      ++++||.|||||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            688999999999999999763

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.45  E-value=0.00016  Score=49.33  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +.=|+|+|++|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3458899999999999999998764

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.45  E-value=0.00018  Score=49.85  Aligned_cols=27  Identities=41%  Similarity=0.586  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+..-|+|+|++|||||||++.|....
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            345668889999999999999997653

>TIGR00235 udk uridine kinase

Probab=97.44  E-value=0.00017  Score=50.03  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..-|+++|++|||||||++.+.+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14531 adenylate kinase; Provisional

Probab=97.44  E-value=0.00015  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.42  E-value=0.00014  Score=50.10  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |+|.|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.42  E-value=0.00019  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -+|+++|++||||||+.+.+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            37999999999999999998754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.42  E-value=0.00016  Score=46.74  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .|+++|++|+|||+|++.+...-
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999887543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.42  E-value=0.00019  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..-+.|+|++|||||||++++...-
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHH
Confidence            3468999999999999999998653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.41  E-value=0.00014  Score=49.47  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|+++|++||||||+++.+...
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998743

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.41  E-value=0.00014  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.41  E-value=3.5e-05  Score=61.89  Aligned_cols=71  Identities=14%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             EEEEEecCCC-------------hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           57 FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        57 ~~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      ..++++|+||             ......+...++...+.+|+.+...+.+-..  ..++...    ..-++.+...+.|
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~at--s~alkia----revDp~g~RTigv  205 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIAT--SPALVVA----REVDPGGSRTLEV  205 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhc--CHHHHHH----HhhCCCccchhHH
Confidence            3568899999             2334556777888999999988877632111  2222322    2334446678888


Q ss_pred             EeCCCCCCCC
Q 029929          124 GNKTDVDGGN  133 (185)
Q Consensus       124 ~nK~Dl~~~~  133 (185)
                      ++|.|+.++.
T Consensus       206 itK~DlmdkG  215 (657)
T KOG0446|consen  206 ITKFDFMDKG  215 (657)
T ss_pred             hhhHHhhhcC
Confidence            9999987654

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.40  E-value=0.016  Score=38.60  Aligned_cols=137  Identities=8%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEe---cCCChhhhcccccchhccCcE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW---DTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      +.-.|+++|..+.++..|..++....-.          +.          ++++.-   -.|...  ..    .=...|.
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~--~~----lRprIDl   67 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSEN--NN----LRPRIDL   67 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccc--cC----CCceeEE
Confidence            3468999999999999999999864311          00          111111   112111  11    1135899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      ++|++|....-++...+.-+..+...+..    + .+.++.+-....+.  ..+..+++.+++..++ .|++.+.-...+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl----G-KVCfl~t~a~~~~~--~sv~~~~V~kla~~y~-~plL~~~le~~~  139 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFL----G-KVCFLATNAGRESH--CSVHPNEVRKLAATYN-SPLLFADLENEE  139 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhc----c-ceEEEEcCCCcccc--cccCHHHHHHHHHHhC-CCEEEeecccch
Confidence            99999999999998887766655333222    2 56777776665443  5677889999999888 999999999988


Q ss_pred             CHHHHHHHHHHHHh
Q 029929          164 NVEAAFECIAKNAL  177 (185)
Q Consensus       164 ~i~~~~~~i~~~~~  177 (185)
                      +...+-..|.+.+.
T Consensus       140 ~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  140 GRTSLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887777776654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.39  E-value=0.00023  Score=47.81  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      .+.++|+.|+|||||+|.+.+-..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            688999999999999998876543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.39  E-value=0.00017  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -.++++|+.|||||||++.+..
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            3689999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.39  E-value=0.00076  Score=42.59  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -|++-|+-|||||||.+.+...-
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47888999999999999987654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=8.4e-05  Score=52.34  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhc----cC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYR----GA   81 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~----~~   81 (185)
                      ..+.|++.|..  ||||+|++++.+.-. ...++...+|....-...+ ..--..+|+++|-.....+..--++    ..
T Consensus        44 ~E~~I~~~Gn~--~~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   44 FEFFIGSKGNG--GKTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             ceeEEEEecCC--ceeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            34677777754  459999999977643 3356666666554443333 2234579999995544433222111    12


Q ss_pred             cEEEEEEECCChhhH-HHHHHHHHHHH--------------------------hh-------cCCCCCCCCcEEEEEeCC
Q 029929           82 DCCVLVYDVNVMKSF-DNLNNWREEFL--------------------------IQ-------ASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        82 d~~i~v~d~~~~~~~-~~~~~~~~~~~--------------------------~~-------~~~~~~~~~p~iiv~nK~  127 (185)
                      =.+|++.|.++++.+ ..++..++.+.                          ..       ....++..+|++||+.|.
T Consensus       121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY  200 (363)
T KOG3929|consen  121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY  200 (363)
T ss_pred             hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence            256889999986533 22222222211                          10       011233466999999999


Q ss_pred             CCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929          128 DVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus       128 Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      |....-   .+.-..+-++.++..++ ......|++.
T Consensus       201 DvFq~FesekRkH~C~~LRf~Ah~yG-aaLlmfSskM  236 (363)
T KOG3929|consen  201 DVFQDFESEKRKHICKTLRFVAHYYG-AALLMFSSKM  236 (363)
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhh-hHHHHHHHhh
Confidence            986431   23333445556666666 4555566553

>PRK07429 phosphoribulokinase; Provisional

Probab=97.38  E-value=0.00024  Score=52.71  Aligned_cols=31  Identities=29%  Similarity=0.401  Sum_probs=25.8

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      |......++-|.|.|++|||||||++.+.+.
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l   31 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL   31 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence            4445567799999999999999999988754

>PRK08233 hypothetical protein; Provisional

Probab=97.38  E-value=0.00021  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +-|+|.|.+|||||||.++|...-
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            567889999999999999998653

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.37  E-value=0.001  Score=51.45  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=45.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      =++|.||+||||||.++++.+.-......  +-.-....++.+++-. ++++-+-.|.. |......++++---+|+|-.
T Consensus       260 liLvTGPTGSGKTTTLY~~L~~ln~~~~n--I~TiEDPVE~~~~gI~-Q~qVN~k~glt-fa~~LRa~LRqDPDvImVGE  335 (500)
T COG2804         260 LILVTGPTGSGKTTTLYAALSELNTPERN--IITIEDPVEYQLPGIN-QVQVNPKIGLT-FARALRAILRQDPDVIMVGE  335 (500)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcCCCce--EEEeeCCeeeecCCcc-eeecccccCCC-HHHHHHHHhccCCCeEEEec
Confidence            47889999999999999998765443322  1111223333333322 44444555522 23333444444334455555


Q ss_pred             CCChhhHHH
Q 029929           90 VNVMKSFDN   98 (185)
Q Consensus        90 ~~~~~~~~~   98 (185)
                      +-|.++.+.
T Consensus       336 IRD~ETAei  344 (500)
T COG2804         336 IRDLETAEI  344 (500)
T ss_pred             cCCHHHHHH
Confidence            655555443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0002  Score=53.21  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~   33 (185)
                      +.++||.||||||+++.+.+-..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67899999999999999987653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.37  E-value=0.00024  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999988765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.37  E-value=0.00095  Score=49.02  Aligned_cols=23  Identities=30%  Similarity=0.666  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -+|+|.|++|||||||++++...
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~  155 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAE  155 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999865

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK14532 adenylate kinase; Provisional

Probab=97.37  E-value=0.00018  Score=49.13  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +|+++|+|||||||+...+....
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999987543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.00017  Score=48.98  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||+|-+.+-.
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCc
Confidence            47889999999999999887543

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.36  E-value=0.001  Score=49.22  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+|+|.|++|||||||+++|...-
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-79
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-79
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-78
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-78
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-64
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-52
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-51
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-51
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-51
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-31
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-30
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-30
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-30
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-30
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-30
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-30
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-30
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-30
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-30
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-30
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-30
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-30
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-30
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-29
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-29
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-29
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-29
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-29
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-29
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-29
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-29
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-29
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-29
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-29
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-29
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-29
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-29
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-29
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		7e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-28
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-28
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-28
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-28
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-28
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-28
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-28
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		5e-28
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-28
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-28
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-28
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-28
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-28
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		8e-28
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-28
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		9e-28
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-27
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-27
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-27
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-27
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-27
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-27
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-27
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-27
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-27
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-27
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-26
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-26
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		4e-26
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-26
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		8e-26
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-25
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-25
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-25
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-25
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-25
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		6e-25
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		8e-25
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-25
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		9e-25
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-24
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-24
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-24
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-24
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-23
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-23
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-23
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-21
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-21
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-20
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		6e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		7e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-19
1byu_A	216	Canine Gdp-Ran Length = 216		1e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		3e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		4e-19
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-19
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-18
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-18
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-18
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-17
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		9e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-16
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		4e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-16
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-16
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-16
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-16
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-16
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-16
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-16
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-16
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		9e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-15
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-15
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-15
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		4e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-15
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-15
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		6e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-15
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-15
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-15
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-15
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-15
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		8e-15
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		8e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		5e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		9e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		5e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-12
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		6e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		7e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-12
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-11
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-11
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		7e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		7e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-11
1mh1_A	186	Small G-Protein Length = 186		7e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		9e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		9e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-10
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-10
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-10
2kb0_A	178	Cdc42(T35a) Length = 178		5e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		6e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		7e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		7e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		8e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-09
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-09
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-09
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		2e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-08
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-08
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-07
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-07
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-07
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-07
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		4e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-04
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		2e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		6e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		7e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		7e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		8e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		8e-04

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  290 bits (742), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 158/184 (85%), Gaps = 3/184 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
            + E
Sbjct: 178 TEVE 181

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  289 bits (740), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 158/184 (85%), Gaps = 3/184 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
            + E
Sbjct: 178 TEVE 181

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  288 bits (737), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/184 (75%), Positives = 157/184 (85%), Gaps = 3/184 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D +   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
            + E
Sbjct: 178 TEVE 181

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  286 bits (733), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 157/184 (85%), Gaps = 3/184 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAG ERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
            + E
Sbjct: 178 TEVE 181

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  241 bits (614), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 145/179 (81%), Gaps = 2/179 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M+SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           FV+LGNK D +  + ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+
Sbjct: 121 FVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/183 (53%), Positives = 127/183 (69%), Gaps = 3/183 (1%)
Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S + +LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQI
Sbjct: 1   GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPE+FPFV
Sbjct: 61  WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           VLGNK D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AFE   +  L  E 
Sbjct: 121 VLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEE 177
Query: 182 QEE 184
           Q E
Sbjct: 178 QLE 180

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 123/173 (71%), Gaps = 3/173 (1%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LGNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L  E
Sbjct: 127 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +  L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 8   KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LG
Sbjct: 68  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           NKTD+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L
Sbjct: 128 NKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LGNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L
Sbjct: 129 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 10  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D+
Sbjct: 70  YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL 125
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
              N R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ
Sbjct: 126 --ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +++ Y +TIG DF  + +  E++   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV    SFDN+  W +E    A     EN   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+   + RVV+  + +    S G I + ETSAK  +NVE AF  +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    EN   +++GNK+
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    EN   +++GNK+
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 7/175 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK--- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A++
Sbjct: 117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 168

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YRG+   V+VYD+    SF  L  W +E         PEN    + GNK D
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +   + R V  K AK +  S G I   ETSAK   N+E  F+ I++     +P E
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLDPHE 191

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A++
Sbjct: 122 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 166

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK  L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 136 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F   A
Sbjct: 149 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK D+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
                +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K N+ + ETSA +  NVE AF+ I
Sbjct: 121 DL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++   +YRG    ++VYDV   +SF N+  W  E        + ++   
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCR 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +++GNK   D    +VV  + A  +    G I  FETSAKE  NVE  F CI +  L+
Sbjct: 117 ILVGNKN--DDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++G K 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 124 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 114/179 (63%), Gaps = 9/179 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F TK +Q ++ ++   QIWDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +LVYD+    SF+N+  W +E    A      N   +++GNK
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
           +D+   + RV+++  A  + A K  + + ETSA E  NVE AF  +  N + N  Q+++
Sbjct: 123 SDLK--HLRVINDNDATQY-AKKEKLAFIETSALEATNVELAFHQLL-NEIYNVRQKKQ 177

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 124 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLF 57
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +  
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +  + A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V+ GNK+D++  + R V E++A+   A K  IPYFETSA  G N+  A E +    +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 K 178
           K
Sbjct: 185 K 185

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 16/185 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    +
Sbjct: 144 --IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 178 KNEPQ 182
           K   Q
Sbjct: 199 KRMEQ 203

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK+
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 127 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK+
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +  R   L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQ
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQE F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVI 129
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK+D++  + R V  ++ +A+    G I + ETSAK   NVE AF   AK   +  
Sbjct: 130 MLIGNKSDLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 181 PQ 182
            Q
Sbjct: 187 QQ 188

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 K 178
           K
Sbjct: 185 K 185

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++           +   +++GNKTD
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTD 117
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 118 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TI A FLT+ V  +D     +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  120 bits (300), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 7/183 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   ++ 
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 PQE 183
            Q+
Sbjct: 174 SQQ 176

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  120 bits (300), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 7/183 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   ++ 
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 PQE 183
            Q+
Sbjct: 174 SQQ 176

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+    SF   + W ++   +       +   +++GNKTD
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 131 L--SDKRQVSTEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 172

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK +  S   I + ETSAK   N+   F  I++
Sbjct: 122 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 K 178
           K
Sbjct: 185 K 185

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+  + SF   + W ++           +   +++GNKTD+
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKTDL 119
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
                  + E + +   A + ++ + ETSAK G+NV+  F  +A   L+
Sbjct: 120 ADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S    L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  + +   LQ
Sbjct: 3   LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQE F+S+  ++YRGA   +LVYD+    +F++L  W E+    A      N   
Sbjct: 63  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +++GNK+D++  + R V +++ +A+    G I + ETSAK   NVE AF   AK
Sbjct: 119 MLIGNKSDLE--SRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAK 169

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK +  S   I + ETSAK   N+   F  I++
Sbjct: 123 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  A+YR A   +L+YDV    SFDN+  W    L +       +   ++LGNK  
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK-- 125
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           VD  + RVV  +  +      G +P+ ETSAK G NV+ AF  IAK
Sbjct: 126 VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 170

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +   +    +D      V  GNK+
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    +    +++GNK+
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 136 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 178

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    +    +++GNK+
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 122
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 123 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 165

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 105/164 (64%), Gaps = 7/164 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAG
Sbjct: 12  LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG 71
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   ++VYD++   S++N N+W  E    A     +N    ++GNK
Sbjct: 72  QERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNK 127
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +D+   + R V  +++K + A +  + + ETSA    NV+ AFE
Sbjct: 128 SDL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFE 168

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    E+   +++GNK D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK 
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 15/168 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG ER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD+
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 123
Query: 130 DGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
              + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 124 --ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    +++GNK 
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKC 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMAR 180

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 15/168 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG ER
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD+
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTDL 133
Query: 130 DGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
              + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 134 --ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 174

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 129
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 130 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+    +    +++GNK+
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D +   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    +    +++GNK+
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D +   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 130
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK +    G + + E SAK G NVE AF   AK   +N
Sbjct: 131 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+     L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           ++ GNK D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L
Sbjct: 119 ILCGNKKDLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKIL 172

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YR A   ++VYDV   +SF    +W +E   QAS    ++    ++GNK D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 129 V--DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
              +GG  +V  E+  K   A +  + +FETSAK G NV   F  I +
Sbjct: 120 XLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++V+DV    SF+    W +E   Q +P    N    + GNK+D+
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
              ++R V+ + A+ +    G + + ETSAK   NV+  F  IA+   + +P E
Sbjct: 130 L--DARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 98/163 (60%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVVS ++ +      G   +FE SAK+  NV+  FE
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 160

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NK D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKID 120
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +   +   +  ++A+   A +  + ++ TS KE  NV   F+ +A+  L+
Sbjct: 121 L--LDDSCIKNEEAEG-LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 30  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            RF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +++GNK 
Sbjct: 90  GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 145
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK +    G + + E SAK G NVE AF   AK   +N
Sbjct: 146 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 194

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNK 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D+     R VS+++A+ +  ++ ++ Y ETSAKE  NVE  F
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLF 180

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   ++ GNK 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+D    R V+  +A  + A +  + + ETSA  G +VE AF   A+  L
Sbjct: 127 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ E++    QIWDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   ++VYD++   S++N N+W    L +   +  +N    ++GNK+
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D+   + R V   +AK + A +  + + ETSA    NV+ AF
Sbjct: 126 DL--AHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAF 164

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++    RVV  +K +   A +    +FE SAKE  +V  AFE
Sbjct: 139 DME--EERVVPTEKGQL-LAEQLGFDFFEASAKENISVRQAFE 178

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTIL 187

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 10  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK+
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    +R V  ++A+ +  + G + + ETSA +  NVE AFE + K
Sbjct: 126 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 169

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   ++ GNK 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+D    R V+  +A  + A +  + + ETSA  G +VE AF   A+  L
Sbjct: 124 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK+
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    +R V  ++A+ +  + G + + ETSA +  NVE AFE + K
Sbjct: 141 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 184

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTS++ ++    F N Y++TIG DFL+K +  ++    LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   ++VYD+   +SF+N   W ++ L +      ++    ++GNKTD+
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG----KDVIIALVGNKTDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
             G+ R V+ ++     A + N  + ETSAK G N++  F+  A
Sbjct: 119 --GDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 22  MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF  + +W      Q      +N   +++GNK 
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQVILVGNKC 137
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVV  +  +      G   +FE SAKE  NV+  FE
Sbjct: 138 DLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R++++  A+YRGA   +L YD+   +SF+ + +W      Q      +N   +++GNK D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            +  + RVVS ++ +      G   +FE SAK+  NV+  FE
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 62
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  106 bits (265), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDT
Sbjct: 17  RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 76
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 77  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 132
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F  + K  ++ 
Sbjct: 133 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 97/166 (58%), Gaps = 6/166 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK+
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     R VS  +A++       +   ETSAK+  NVE AF  +A
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D  N    ++GNK  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK-- 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +D  N  V   +  K   A K +  + E SAK    V+ AFE + +  ++
Sbjct: 131 IDKENREVDRNEGLK--FARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDT
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65  AGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           AGQERF +S+   +YR     V VYD+  M SF +L  W EE       +D    P +++
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
           GNK D+       V    A+ + A   ++P FETSAK   +  +VEA F  +A 
Sbjct: 134 GNKCDLRSAIQ--VPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +   R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61  IWDTAGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
           +WDTAGQERF +S+   +YR     V VYD     SF +L  W EE       +D    P
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IP 138
Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
            +++GNK D+       V    A+ + A   + P FETSAK   +  +VEA F  +A 
Sbjct: 139 RILVGNKCDLRSAIQ--VPTDLAQKF-ADTHSXPLFETSAKNPNDNDHVEAIFXTLAH 193

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+S+  +++R AD  +L+YDV   KSF N+  W +  +I+ +    E  P +++GNK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145
Query: 130 DGGNS----RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
               +    + V     +    + G + + ETSAK+G N+  A   +A+   K
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           LK+++LGD   GKTSL   +    F  QYK TIG DF  + +     L  TLQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GNK 126
                +   +  GA   +LVYD+   +SF+NL +W    +++    + E  P V L GNK
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            D++  + R +  +K   +C   G   +F  SAK G +V   F+ +A   L
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEIL 172

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 121 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 171
Query: 179 NEPQEE 184
             PQ E
Sbjct: 172 GNPQLE 177

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 113 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 163
Query: 179 NEPQEE 184
             PQ E
Sbjct: 164 GNPQLE 169

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 114 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 164
Query: 179 NEPQEE 184
             PQ E
Sbjct: 165 GNPQLE 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            G   R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 AG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 119 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++ +DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           ++  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  L  +P  E
Sbjct: 122 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LIGDPNLE 171

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  L  +P  E
Sbjct: 128 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LIGDPNLE 177

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +   +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++    A+ WC    N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 4   RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---RLFTLQ 60
           RR +  K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA  +   V F D    +    
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFN 64
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE+   L   +Y GA   +L +DV    +  NL  W +EF  QA   +    P 
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PI 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           VV  NK D+   N + +S+K        K N  YFE SAK   N    F  +A+
Sbjct: 121 VVCANKIDIK--NRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++    A+ WC    N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 129
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F
Sbjct: 130 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 133
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F
Sbjct: 134 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F
Sbjct: 122 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 160

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F
Sbjct: 120 DLE--DKRQVSVEEAKNR-ADQWNVNYVETSAKTRANVDKVF 158

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +       N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   ++   +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L   FY  A   +L +DV    SFDN+ N W  E          +  P +V+G KT
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKT 148
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+    S V          V+  + +    S G + Y E SA+   NV A F+  A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
Query: 178 KN 179
            +
Sbjct: 209 SS 210

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +       N  + E+SAK   NV   F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F
Sbjct: 122 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 160

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    YRGAD  VL + +    S++N L  W  E L + +P    N P V++G K
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 TDV--DGG----NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
            D+  D G    ++ V++  + +      G   Y E S+K   NV+A F+   K  L+  
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ-P 181
Query: 181 PQEEE 185
           P+ +E
Sbjct: 182 PRRKE 186

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +  +  L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 168

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+    SR V  K
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL---PSRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 185

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L   +  D    P +V+GNK+
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E ++KA  W      + Y ETSAK   NV+  F
Sbjct: 120 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L   +  D    P +V+GNK+
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E ++KA  W      + Y ETSAK   NV+  F
Sbjct: 124 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K +L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GN+ D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F + Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F  +Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 167

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F  +Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ------------------ 51
           K ++LG+S VGK+S++ +     F      TIGA F T  V                   
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 52  -----------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92
                            + + L  ++  IWDTAGQER+ S+   +YRGA C ++V+D++ 
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 93  MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152
             + D    W  +  I +      N+  +++ NK D +     ++  +K     A   N+
Sbjct: 129 SNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY----AQDNNL 178
Query: 153 PYFETSAKEGFNVEAAFECIAKNALKN 179
            + +TSAK G N++  F  +A+   KN
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F ++Y  TI  D   K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG+E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F +++  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F   Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 139
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 140 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE   ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE F ++   + R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  +LV+ V    SF+ +  ++ + L      D + FP +++GNK D+D  + R V+++
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVTQE 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           + +   A +  + Y E SAK   NV+ AF  + +   K + Q
Sbjct: 132 EGQ-QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQ 172

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LV+ +N  +SF+ +     + L      D ++FP V++GNK D++  + R V   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +A A+ AS  ++ YFE SAK   NV+ AFE + +   K + QE
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF ++N +RE+        D ++ P V++GNK D+    +R V  K
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDL---PTRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A     S G IP+ ETSAK    VE AF  + +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++   TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK+D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEF--LIQASPSDPENFPFVVLGN 125
            +  L    Y  +D  +L + VN   SFDN++  W  E    I  + +       V++G 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-------VLVGL 135
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
           K D+    S  V++++    C   G + Y E S  AK G N   E + +CI  N
Sbjct: 136 KVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y  +D  +L + VN   SFDN++  W  E       +       V++G K 
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVGLKV 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
           D+    S  V++++    C   G + Y E S  AK G N   E + +CI  N
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT ++  Y    F   Y  T+  +F +  V  +     L 
Sbjct: 1   MSTAR--FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLG 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 58  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIP 112
Query: 120 FVVLGNKTDV--------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D+        D   +  ++  + +      G + Y E S+K   NV+A F+ 
Sbjct: 113 IVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDT 172
Query: 172 IAKNALK 178
             + AL+
Sbjct: 173 AIRVALR 179

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L  +F  G    VLVY V  + SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 DGGN--SRVVSEKKAKAWCASKGNIPYFETSAKE 161
                   V  +K A++W A+     + E+SA+E
Sbjct: 142 SPEREVQAVEGKKLAESWGAT-----FMESSARE 170

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L 
Sbjct: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLG 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N+   W  E L   +P      P
Sbjct: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVP 112
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            +++G K D        +D   +  ++  + +      G+  Y E S+K   NV+A F+ 
Sbjct: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
Query: 172 IAKNALK 178
             K  L+
Sbjct: 173 AIKVVLQ 179

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
                RV+S ++ KA  A   N  + E+SAKE       F  I   A K E
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEKLE 171

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
                RV+S ++ KA  A   N  + E+SAKE
Sbjct: 119 H--MERVISYEEGKA-LAESWNAAFLESSAKE 147

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
                RV+S ++ KA  A   N  + E+SAKE
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKE 152

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           KV ++G++ VGK++L++ + ++  KF   Y  T G + +   V   D   +++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G + ++     ++ G    +LV+DV+ M+SF++   W  E L  A P        V++ N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGFNVEAAFECIAKNALKN 179
           KTD+     +V  +  A+ W A+   + +F+ SA   G + +A F  IA    +N
Sbjct: 141 KTDLPPQRHQVRLD-MAQDW-ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D        +D   +  ++  + +      G   Y E S+K   NV+  F+ 
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
Query: 172 IAKNALK 178
             +  L+
Sbjct: 175 AIRVVLQ 181

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFXP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 193 MATRAGLQ 200

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 2   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 58  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 174 MATRAALQ 181

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 4   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 59
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 60  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 115
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 176 MATRAALQ 183

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 2   MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 58  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 174 MATRAALQ 181

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE +  L    Y   D  ++ + V    SF N+   +EE++ +     P N PF+++G +
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQ 131
Query: 127 TDV--DGGNSRVVSEKKAKAWCASKGN 151
            D+  D      +++ K K  C  +G 
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQ 158

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 193 MATRAGLQ 200

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +V+ + R   L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128
           +  L    Y  ++  ++ + +++  S +N+   W  E L        +  P +++G K D
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIILVGCKVD 125
Query: 129 VDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +      +          V+ ++ ++     G   Y+E SAK G+ V   FE   + +L
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L    E+  I     D E+ P +++GNK   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNK--C 119
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D   SR V   +A+A  A      + ETSAK   NV+  F+
Sbjct: 120 DESPSREVQSSEAEAL-ARTWKCAFMETSAKLNHNVKELFQ 159

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 70  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 125
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F +    TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
                RV+S ++ KA  A   N  + E+SAKE
Sbjct: 122 H--MERVISYEEGKA-LAESWNAAFLESSAKE 150

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +       Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRARPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D   +R +++ K +    ++G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 173 MATRAGLQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNAL 177
             D    R +++ K +     +G           Y E SAK    V   FE   + AL
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69  -RFQSLGVAFYRGADCCVLVYDVNVMKSFDN---LNNWREEFLIQASPSDPENFPFVVLG 124
              Q  G    R  +  VLVYD+    SF+    L N  +E         P+N   +++G
Sbjct: 88  DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162
           NK D+D  +SR VS ++ +   A++    ++E SA  G
Sbjct: 140 NKADLD--HSRQVSTEEGEKL-ATELACAFYECSACTG 174

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S+    +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +
Sbjct: 1   GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGL 59
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPF 120
           WDTAGQE +  L    Y   D  ++ + +    SF+N+   W  E           N P 
Sbjct: 60  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           +++G K D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 115 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 174
Query: 171 CIAKNALKNEP 181
              +  L   P
Sbjct: 175 EAIRAVLCPPP 185

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV I+G+   GK++L+++Y+   +  Q ++  G  F  KE+  + + + L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             Q     F    D  V V+ +    SF  + N+   FL   S  +    P V++G +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +   N RV+ + +A+          Y+ET A  G NVE  F+ +A+  +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LVY +   +SF ++   R++ +        E  P +++GNK D++       SE 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +A    A +   P+ ETSAK    V+  F  I + 
Sbjct: 132 RA---LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Query: 178 KNEP 181
              P
Sbjct: 180 CPPP 183

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            F  L    Y   D  +L + V    SF N++  W  E       +     P +++G ++
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D          +D    + V E+ AK          Y E SA    N++  F+
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 120 LRDDPSTI--EKLAK 132

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 129 LRDDPSTI--EKLAK 141

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + V+   S D+L N  E+++ +     P N P +++ NK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVD---SPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141
Query: 130 DGGNS----------RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
                            V     +A         Y E SAK    V   FE   + AL+
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    FS +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 180

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 K 178
           K
Sbjct: 178 K 178

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK       +G        ++ Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEPQEEE 185
             +P  ++
Sbjct: 178 CPQPTRQQ 185

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 124
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 189

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y   +  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   K  ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y       +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 173

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK       +G        ++ Y E SA     ++  F+
Sbjct: 124 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK       +G        ++ Y E SA     ++  F+
Sbjct: 125 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 177

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L +V++LGD GVGKTSL + +  ++  + ++  +G D   + +  +    TL + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68  ERFQS--LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           E+        +  +G    V+VY +    SF++ +  R +          ++ P +++GN
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVGN 119
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           K D+     R VS ++ +A CA   +  + ETSA    NV   FE
Sbjct: 120 KADL--ARCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFE 161

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A CA      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 36/203 (17%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFY--------------RG-----ADCCVLVYDVNVMKSFDNLN-NWREEFLI 108
            +  L    Y              RG     AD  ++ + +    SF+N+   W  E   
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPENFPFVVLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETS 158
                   N P +++G K D+  D      + EKK          A     G + Y E S
Sbjct: 125 HCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 179
Query: 159 AKEGFNVEAAFECIAKNALKNEP 181
           A     ++  F+   +  L   P
Sbjct: 180 ALTQRGLKTVFDEAIRAVLCPPP 202

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASK 149
           G   D        VS++K +  C SK
Sbjct: 117 GTHLD--------VSDEKQRKACXSK 134

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASK 149
           G   D        VS++K +  C SK
Sbjct: 119 GTHLD--------VSDEKQRKACXSK 136

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K+SL+ ++V   F + Y  TI  D   + +  +  + TLQI DT G  +F ++       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LV+ V   +S + L    +  LI       E+ P +++GNK D      R V  +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYK--LIVQIKGSVEDIPVMLVGNKCD---ETQREVDTR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +A+A  A +    + ETSAK  +NV+  F+
Sbjct: 135 EAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 153
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQEE 184
           K+D+       VSE +A   CA   +  + ETSA    NV+  FE I +   L+ + +E+
Sbjct: 154 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 74
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N  
Sbjct: 75  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 129
Query: 120 FVVLGNKTDVDGGNSRVV 137
            +++G K+D+    S +V
Sbjct: 130 MLLVGCKSDLRTDVSTLV 147

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSL 59
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPF 120
           WDT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N   
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKM 114
Query: 121 VVLGNKTDVDGGNSRVV 137
           +++G K+D+    S +V
Sbjct: 115 LLVGCKSDLRTDVSTLV 131

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 126
Query: 129 V 129
           +
Sbjct: 127 L 127

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134
Query: 120 FVVLGNKTDVDGGNSRVV 137
            +++G K+D+    S +V
Sbjct: 135 MLLVGCKSDLRTDVSTLV 152

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           K+D+       VSE +A   CA   +  + ETSA    NV+  FE I +  
Sbjct: 123 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 125
Query: 129 V 129
           +
Sbjct: 126 L 126

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 142
Query: 129 V 129
           +
Sbjct: 143 L 143

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
           K+D+       VSE +A A      +  + ETSA    NV+  FE I +   L+ + +E
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
           K+D+       VSE +A A      +  + ETSA    NV+  FE I +   L+ + +E
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +      +  +A        + +  +    +L ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK+
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + +   L+ + +E
Sbjct: 122 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKE 175

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQE 68
           KV++LG  GVGK++L   +   +   + +A       +  V  E+  L    IW+  G  
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
                 +A     D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK+D
Sbjct: 64  WLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKSD 117
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +    SR VS  + +A CA   +  + ETSA    NV+A FE + + 
Sbjct: 118 LV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           + KV++LG  GVGK++L   +   +   + +A       +  V  E+  L    IW+  G
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                   +A     D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK
Sbjct: 67  GRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNK 120
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +D+    SR VS  + +A CA   +  + ETSA    NV+A FE + + 
Sbjct: 121 SDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A  A      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N+LKN
Sbjct: 113 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 162

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N+LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 179

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSN---DRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKNE 180
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N LKN+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNN-LKNQ 180

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +FS     T+G  F  ++V   +   T++IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKIWDIGGQP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG +  V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+          +K          I  +  S KE  N++   + + +++
Sbjct: 132 NKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT--- 64
           + KV++LG+SGVGK++L   +   +  N ++     D   + +  +    TL ++D    
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 65  --AG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-F 118
             AG   Q+     G AF       ++V+ V   +SF  +     E L++     P +  
Sbjct: 72  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKV----PETLLRLRAGRPHHDL 120
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           P +++GNK+D+    SR VS ++ +    +  +  + ETSA    N    FE
Sbjct: 121 PVILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 169

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG    V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+ G        +K          I  +  S KE  N++   + + +++
Sbjct: 132 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG    V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 140
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+ G        +K          I  +  S KE  N++   + + +++
Sbjct: 141 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 192

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL    IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63  -DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPF 120
            D  G  R   L     +  D  ++V+ V   +SF  +     E L++     P +  P 
Sbjct: 83  GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +++GNK+D+    SR VS ++ +    +  +  + ETSA    N    FE
Sbjct: 134 ILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 180

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT--- 64
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D    
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  --AG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-F 118
             AG   Q+     G AF       ++V+ V   +SF  +     E L++     P +  
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKV----PETLLRLRAGRPHHDL 110
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           P +++GNK+D+    SR VS ++ +    +  +  + ETSA    N    FE
Sbjct: 111 PVILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 159

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKTS++ +    K            F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y+     + V D N     D +   REE +   +  +  N   +V  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSN---DRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 VDGGNS-RVVSEK------KAKAW-----CASKGNIPY 154
           +    S   V+EK      K + W     CA+ G+  Y
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLY 167

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V+F +  FT  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y   D  + V D N  +  D+    REE     +  + ++   +V  NK D
Sbjct: 73  KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNSRV-VSEK------KAKAW-----CASKGNIPYFETSAKEGFN 164
           +    S   V+EK      + + W     CA++G+  Y      EGF+
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY------EGFD 171

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q++  +  +    TIG++   +E+  ++  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +S    +Y   +  +LV D     S D   L   +EE     +  D      ++  NK 
Sbjct: 73  LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
           D+ G
Sbjct: 128 DMKG 131

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 13  ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----- 67
           ILG  G GK++L  +++ ++F ++Y   +  D  + E   + +   L++ DTA       
Sbjct: 26  ILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLDTPRN 84
Query: 68  -ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ER+ +   AF       ++VY V+  +SFD+ +++ E   + A  +   + P ++LGNK
Sbjct: 85  CERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNK 136
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAKNA 176
            D+     R V++ +  A     G + +FE SA   F +V+  F    + A
Sbjct: 137 LDM--AQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVREA 184

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 11  VIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ G   VGK+S MN  V +  S  + Y  T   D + K ++    +  + + DT G +
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69  RFQSLG--------VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
               LG          FYR ADC +LV D       D++ N  +E             PF
Sbjct: 95  DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 121 VVLGNKTDVDG 131
           VV+ NK DV G
Sbjct: 144 VVVVNKIDVLG 154

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+ +  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +Y   +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NCLKN 179

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS----RVVSEK---KAKAWC 146
           + G  S    R V E    ++  WC
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWC 153

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 18  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 73  KIRPYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 77
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V++++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
           + +  N+  +++K      + + W     CA+ G+  Y
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9  LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
          +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 5  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
          + +    +++   D  + V D    K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
           + +  N+  +++K      + + W     CA+ G+  Y
Sbjct: 130 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-111
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-109
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-109
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-87
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-83
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-79
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	9e-73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	9e-67
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-66
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-66
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-66
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	8e-66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-66
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-65
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-65
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-65
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-65
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-65
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-65
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-65
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-64
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-64
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-64
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-64
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-63
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-63
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-63
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-63
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-62
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-62
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-61
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-60
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-60
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-60
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-60
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-58
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-58
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-58
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	8e-58
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-57
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-57
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-57
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-57
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-56
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-55
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-54
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-53
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-53
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-52
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-51
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-37
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-37
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-37
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-35
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	7e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-30
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	5e-30
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-19
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-18
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-10
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	6e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-08
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	8e-06
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	6e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-04

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  314 bits (808), Expect = e-111
 Identities = 138/184 (75%), Positives = 158/184 (85%), Gaps = 3/184 (1%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query: 181 PQEE 184
            + E
Sbjct: 178 TEVE 181

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  309 bits (793), Expect = e-109
 Identities = 115/181 (63%), Positives = 144/181 (79%), Gaps = 2/181 (1%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M+SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           FV+LGNK D +    ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+ 
Sbjct: 121 FVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

Query: 180 E 180
            
Sbjct: 180 N 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  308 bits (792), Expect = e-109
 Identities = 95/180 (52%), Positives = 125/180 (69%), Gaps = 4/180 (2%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA +   L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+Q
Sbjct: 1   MAGKS-SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPF
Sbjct: 60  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 119

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L  E
Sbjct: 120 VILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  253 bits (649), Expect = 1e-87
 Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 8/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NK 
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKI 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D+   +   +  ++A+   A +  + ++ TS KE  NV   F+ +A+  L+
Sbjct: 120 DLL--DDSCIKNEEAEGL-AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  244 bits (625), Expect = 2e-83
 Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFT 58
           +     +  KV ++G++ VGK++L++ + ++  KF   Y  T G + +   V   D   +
Sbjct: 13  IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72

Query: 59  LQIW--DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
           ++++  DTAG + ++     ++ G    +LV+DV+ M+SF++   W E  L  A P    
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFEL-LKSARPDRER 131

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-EGFNVEAAFECIAKN 175
               V++ NKTD+       V    A+ W  +   + +F+ SA   G + +A F  IA  
Sbjct: 132 PLRAVLVANKTDLP-PQRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATT 189

Query: 176 ALKNEPQEEE 185
             +N   +  
Sbjct: 190 FYRNYEDKVA 199

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  242 bits (620), Expect = 6e-83
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 10/180 (5%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
             +   LKV I+G+   GK++L+++Y+   +  +  +  G  F  KE+  + + + L I 
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIR 72

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  G    Q     F    D  V V+ +    SF  + N+        S  +    P V+
Sbjct: 73  DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC---SFRNASEVPMVL 124

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           +G +  +   N RV+ + +A+          Y+ET A  G NVE  F+ +A+  +    +
Sbjct: 125 VGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  232 bits (595), Expect = 2e-79
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 8/183 (4%)

Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           + R    L++ +LGD+  GK+SL+++++   +    + T   +   KE+  + +   + I
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLI 58

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG    +     F   AD  + V+ +    SF  ++    +                
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS-SLRGEGRGGLALA 112

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A  A      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172

Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  232 bits (595), Expect = 1e-78
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 14/188 (7%)

Query: 1   MASRRR----MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL 56
           MAS  +    +  K++++GD G GKT+ + +++  +F  +Y AT+G +            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 57  FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
               +WDTAGQE+F  L   +Y  A C ++++DV    ++ N+ NW  + +        E
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----E 118

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N P V+ GNK D+   + +V ++         K N+ Y++ SAK  +N E  F  +A+  
Sbjct: 119 NIPIVLCGNKVDIK--DRKVKAKSIV---FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

Query: 177 LKNEPQEE 184
           + +   E 
Sbjct: 174 IGDPNLEF 181

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  222 bits (567), Expect = 4e-75
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAG 66
            LK+++LGD   GKTSL   +    F  QYK TIG DF  + +     L  TLQIWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GN 125
           Q     +   +  GA   +LVYD+   +SF+NL +W     ++    + E  P V L GN
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV--VKKVSEESETQPLVALVGN 123

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           K D++  + R +  +K   +C   G       SAK G +V   F+ +A   L  +  +
Sbjct: 124 KIDLE--HMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  217 bits (555), Expect = 9e-73
 Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-DFLTKEVQFEDRLFTLQIWDTA 65
           +  K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA +     +  +  +    +WDTA
Sbjct: 10  LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           GQE+   L   +Y GA   +L +DV    +  NL  W +EF            P VV  N
Sbjct: 70  GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCAN 125

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
           K D+   N + +S+K          N  YFE SAK   N    F  +A+           
Sbjct: 126 KIDIK--NRQKISKKLVMEV-LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  206 bits (527), Expect = 7e-69
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWD 63
           +K++I+G++G GKT+L+ Q +  K S+     AT+G D     +Q  D   R   L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVV 122
            AG+E F S    F       + VYD++  ++  D +  W      +AS     + P ++
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVIL 117

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-----YFETSAKEGFNVEAAFECIAKNAL 177
           +G   DV     R     K      +K   P     +F  + +E   +    + I   +L
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

Query: 178 KNEPQEE 184
             + +++
Sbjct: 178 NFKIRDQ 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  203 bits (519), Expect = 9e-68
 Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 7/177 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAG
Sbjct: 11  INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 70

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER+ SL   +YRGA   ++V+DV    SF+    W +E   Q +P    N    + GNK
Sbjct: 71  QERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNK 126

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +D+   ++R V+ + A+ + A +  + + ETSAK   NV+  F  IA+   + +P E
Sbjct: 127 SDLL--DARKVTAEDAQTY-AQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  203 bits (519), Expect = 1e-67
 Identities = 68/177 (38%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAG
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF SL   +YRG+   V+VYD+    SF  L  W +E           N    + GNK
Sbjct: 82  QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNK 137

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
            D+   + R V  K AK + A        ETSAK   N+E  F+ I++     +P E
Sbjct: 138 CDLS--DIREVPLKDAKEY-AESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  201 bits (513), Expect = 9e-67
 Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKA 130

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK + A +  + + E SAK G NVE AF   AK   +N
Sbjct: 131 DLE--AQRDVTYEEAKQF-AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  200 bits (512), Expect = 1e-66
 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D+
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL 123

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
              N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 A--NKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  200 bits (511), Expect = 1e-66
 Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNK 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKI 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++    R VS ++A+++ A      ++ TSAK+   +E  F  + K  ++
Sbjct: 122 DLE--KERHVSIQEAESY-AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  199 bits (509), Expect = 6e-66
 Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L  
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNK 189

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  199 bits (509), Expect = 8e-66
 Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 7/178 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
              K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ERF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNK
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNK 130

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           TD+   + R VS ++ +   A + N+ + ETSAK G+NV+  F  +A      E  ++
Sbjct: 131 TDLA--DKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  198 bits (506), Expect = 8e-66
 Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 11/184 (5%)

Query: 1   MASRRR----MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL 56
           M+S          K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR 
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 57  FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAGQERF+SL  ++ R +   V+VYD+    SF   + W ++   +       
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS---- 118

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +   +++GNKTD+   + R VS ++ +   A + N+ + ETSAK G+NV+  F  +A   
Sbjct: 119 DVIIMLVGNKTDLS--DKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

Query: 177 LKNE 180
              +
Sbjct: 176 PGMD 179

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  198 bits (507), Expect = 9e-66
 Identities = 64/172 (37%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK+
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 136

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++  + R V  ++ +A+ A +  + + ETSAK   NVE AF   AK   + 
Sbjct: 137 DLE--SRRDVKREEGEAF-AREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  198 bits (506), Expect = 2e-65
 Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK+
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+     R VS  +A++       +   ETSAK+  NVE AF  +A 
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  197 bits (504), Expect = 2e-65
 Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      P    +    + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 122

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK + A   +  + ETSAK   N+   F  I++
Sbjct: 123 LT--DVREVMERDAKDY-ADSIHAIFVETSAKNAININELFIEISR 165

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  198 bits (505), Expect = 2e-65
 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+     L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+S+  ++YRGA   +LVYD+   ++++ L NW  +  + AS     N   
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVI 118

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           ++ GNK D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L  
Sbjct: 119 ILCGNKKDLD--ADREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNK 174

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  199 bits (507), Expect = 2e-65
 Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 16/189 (8%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-------- 58
            L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +           
Sbjct: 24  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83

Query: 59  --LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A     E
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCE 140

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N   V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    
Sbjct: 141 NPDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLI 197

Query: 177 LKNEPQEEE 185
           +K   Q  E
Sbjct: 198 MKRMEQCVE 206

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  197 bits (504), Expect = 3e-65
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A          +++GNK+
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKS 140

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+    +R V  ++A+ + A    + + ETSA +  NVE AFE + K     
Sbjct: 141 DLS--QAREVPTEEARMF-AENNGLLFLETSALDSTNVELAFETVLKEIFAK 189

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  197 bits (503), Expect = 4e-65
 Identities = 63/167 (37%), Positives = 106/167 (63%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I  
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILT 188

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  197 bits (503), Expect = 4e-65
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAG
Sbjct: 25  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF S+  A+YR A   +LVYD+   ++FD+L  W +     AS     +   +++GNK
Sbjct: 85  QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNK 140

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK 
Sbjct: 141 LDCE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  197 bits (502), Expect = 6e-65
 Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D      +++GNK 
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV---NMLVGNKI 131

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
           D +   +R V   +   + A K ++ + E SAK    V+ AFE + +  ++     E 
Sbjct: 132 DKE---NREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWES 185

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  196 bits (501), Expect = 8e-65
 Identities = 65/177 (36%), Positives = 110/177 (62%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+   + R V   +A+A+ A K N+ + ETSA +  NVE AF+ I     +   Q++
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  196 bits (501), Expect = 9e-65
 Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 7/179 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQ
Sbjct: 26  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   
Sbjct: 86  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNK 141

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +++GNK D+     +VV    AK + A    IP+ ETSAK   NVE +F  +A    K 
Sbjct: 142 LLVGNKCDLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  195 bits (499), Expect = 1e-64
 Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 7/185 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS     +   
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEK 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++LGNK DV+  + R VS+++ +   A    I + ETSAK   NVE AF  +A++     
Sbjct: 117 MILGNKCDVN--DKRQVSKERGEKL-ALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

Query: 181 PQEEE 185
            +  +
Sbjct: 174 DKNWK 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  196 bits (500), Expect = 1e-64
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNK 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKI 141

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+     R VS+++A+ + +   ++ Y ETSAKE  NVE  F  +A   +    Q  
Sbjct: 142 DLA--ERREVSQQRAEEF-SEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  195 bits (498), Expect = 2e-64
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  +++R AD  +L+YDV   KSF N+  W +     A        P +++GNK 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKA 143

Query: 128 D----VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D          + V     +   A      + ETSAK+G N+  A   +A+   K
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKL-AMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  195 bits (497), Expect = 3e-64
 Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAG
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +L+YD+   +SF  + +W  +    +     +N   +++GNK
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNK 136

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++  + RVV  +  +   A      +FE SAKE  NV+  FE +     + 
Sbjct: 137 CDLE--DERVVPAEDGRRL-ADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  193 bits (494), Expect = 4e-64
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 8/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+         +++GNK
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNK 117

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +D++   +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   + 
Sbjct: 118 SDME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  195 bits (497), Expect = 5e-64
 Identities = 65/179 (36%), Positives = 107/179 (59%), Gaps = 7/179 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+         
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLK 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   ++
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 172

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  193 bits (494), Expect = 6e-64
 Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++   +YRG    ++VYDV   +SF N+  W  E          ++   
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCR 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D      +VV  + A  + A +  I  FETSAKE  NVE  F CI +  L+ +
Sbjct: 117 ILVGNKNDDP--ERKVVETEDAYKF-AGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173

Query: 181 PQEEE 185
                
Sbjct: 174 KDNLA 178

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  194 bits (494), Expect = 1e-63
 Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 13/185 (7%)

Query: 1   MASRRRM------LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED 54
           + S   M      L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + 
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 55  RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114
           +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS   
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-- 120

Query: 115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
             N   +++GNK D+     +VV    AK + A    IP+ ETSAK   NVE +F  +A 
Sbjct: 121 --NVNKLLVGNKCDLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAA 175

Query: 175 NALKN 179
              K 
Sbjct: 176 EIKKR 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  193 bits (492), Expect = 2e-63
 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAG
Sbjct: 22  YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +     +N   +++GNK
Sbjct: 82  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNK 137

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++    RVV  +K +   A +    +FE SAKE  +V  AFE +       
Sbjct: 138 CDME--EERVVPTEKGQLL-AEQLGFDFFEASAKENISVRQAFERLVDAICDK 187

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  193 bits (493), Expect = 2e-63
 Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG
Sbjct: 7   YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +     +N   +++GNK
Sbjct: 67  LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNK 122

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
            D++  + RVVS ++ +   A      +FE SAK+  NV+  FE +     +   +  +
Sbjct: 123 CDME--DERVVSSERGRQL-ADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLD 178

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  192 bits (491), Expect = 2e-63
 Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 16/183 (8%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-------- 58
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +              
Sbjct: 10  YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69

Query: 59  --LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +  + A     E
Sbjct: 70  IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSE 126

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N   V+ GNK+D++  + R V E++A+   A K  IPYFETSA  G N+  A E +    
Sbjct: 127 NPDIVLCGNKSDLE--DQRAVKEEEAREL-AEKYGIPYFETSAANGTNISHAIEMLLDLI 183

Query: 177 LKN 179
           +K 
Sbjct: 184 MKR 186

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  192 bits (490), Expect = 8e-63
 Identities = 60/172 (34%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A      N    ++GNK+
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKS 128

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+   + R V  +++K + A +  + + ETSA    NV+ AFE +     + 
Sbjct: 129 DLA--HLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQK 177

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  191 bits (487), Expect = 1e-62
 Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 10/176 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79

Query: 68  ERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           ERF +S+   +YR     V VYD+  M SF +L  W EE       +D    P +++GNK
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGNK 136

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAKNALKN 179
            D+   ++  V    A+ + A   ++P FETSAK   +  +VEA F  +A     +
Sbjct: 137 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  191 bits (488), Expect = 1e-62
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 8/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 19  SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+         +++GNK
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNK 134

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +D++   +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   + 
Sbjct: 135 SDME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  189 bits (483), Expect = 3e-62
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           +  KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTA
Sbjct: 9   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           GQERF+S+  A+YR A   +L+YDV    SFDN+  W  E    A      +   ++LGN
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGN 124

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           K D    + RVV  +  +   A +  +P+ ETSAK G NV+ AF  IAK   + 
Sbjct: 125 KVDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  185 bits (473), Expect = 9e-61
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S      K++++GD GVGK++L  Q+  + F + Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D E+FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPM 126

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAK 174
           +++ NK D+   + R V+  + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 127 ILVANKVDLM--HLRKVTRDQGKEM-ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  185 bits (473), Expect = 1e-60
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 7/179 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   
Sbjct: 22  GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81

Query: 67  QERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           Q      L     +  D  ++V+ V   +SF  +        ++A      + P +++GN
Sbjct: 82  QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGN 138

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           K+D+    SR VS ++ +   A   +  + ETSA    N    FE   +       +  
Sbjct: 139 KSDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNH 194

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  184 bits (470), Expect = 3e-60
 Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M        K++++G  GVGK++L  Q++   F + Y  TI  D  TK    +     L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           I DTAGQE F ++   + R     +LV+ +N  +SF+ +     + L      D ++FP 
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPV 117

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V++GNK D++  + R V   +A A+  +  ++ YFE SAK   NV+ AFE + +   K +
Sbjct: 118 VLVGNKADLE--SQRQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 181 PQEE 184
            QE 
Sbjct: 175 EQEL 178

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  183 bits (467), Expect = 5e-60
 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++   TI   +  K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK+D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               +R V  ++A+    S G IPY ETSAK    VE AF  + +   ++
Sbjct: 121 A---ARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH 166

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  183 bits (467), Expect = 7e-60
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +D+    SR VS ++ +   A   +  + ETSA    N    FE   +
Sbjct: 119 SDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVR 163

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  184 bits (468), Expect = 1e-59
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 47/209 (22%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR------------ 55
             K ++LG+S VGK+S++ +     F      TIGA F T  V   D             
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66

Query: 56  -------------------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90
                                         IWDTAGQER+ S+   +YRGA C ++V+D+
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126

Query: 91  NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150
           +   + D    W  +  ++ S     N+  +++ NK D +      V   + + + A   
Sbjct: 127 SNSNTLDRAKTWVNQ--LKISS----NYIIILVANKIDKN---KFQVDILEVQKY-AQDN 176

Query: 151 NIPYFETSAKEGFNVEAAFECIAKNALKN 179
           N+ + +TSAK G N++  F  +A+   KN
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  180 bits (458), Expect = 1e-58
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L    E+  I     D E+ P +++GNK D 
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNKCDE 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
               SR V   +A+A  A      + ETSAK   NV+  F+ +     +   
Sbjct: 122 S--PSREVQSSEAEA-LARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  180 bits (458), Expect = 3e-58
 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 8/176 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDL 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++ +  +
Sbjct: 122 P---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK 173

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  179 bits (456), Expect = 5e-58
 Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 7/176 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 133

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +     + ++
Sbjct: 134 DLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  178 bits (453), Expect = 8e-58
 Identities = 55/168 (32%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +
Sbjct: 119 SDLE--DKRQVSVEEAKN-RADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  178 bits (454), Expect = 1e-57
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 8/185 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M  +     +V++ G  GVGK+SL+ ++V   F + Y  TI   +  + +  +  + TLQ
Sbjct: 2   MPEQSN-DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           I DT G  +F ++           +LV+ V   +S + L    +   I       E+ P 
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQIKGSVEDIPV 117

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D      R V  ++A+A  A +    + ETSAK  +NV+  F+ +     +  
Sbjct: 118 MLVGNKCDET---QREVDTREAQA-VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173

Query: 181 PQEEE 185
                
Sbjct: 174 MSLNI 178

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  178 bits (454), Expect = 1e-57
 Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 13/191 (6%)

Query: 1   MASRRR------MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED 54
           MA+ +        L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  + 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 55  RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114
               + I DTAGQE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      +
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---E 116

Query: 115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            EN PF+++GNK+D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +
Sbjct: 117 DENVPFLLVGNKSDLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 173

Query: 175 NALKNEPQEEE 185
                + ++ +
Sbjct: 174 EIRARKMEDSK 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  177 bits (450), Expect = 2e-57
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD- 128
           F SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNK D 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDX 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  G  R V+ ++ +   A +  + +FETSAK G NV   F  I +
Sbjct: 121 LQEGGERKVAREEGEKL-AEEKGLLFFETSAKTGENVNDVFLGIGE 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  177 bits (452), Expect = 3e-57
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L  +F  G    VLVY V  + SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGNKADL 141

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
                R V   + K   A      + E+SA+E    +  F  + +   + E    +
Sbjct: 142 S--PEREVQAVEGKK-LAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQ 194

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  175 bits (446), Expect = 1e-56
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           + DTAGQ+ +      +    +  +LVY V  +KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPI 114

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D+     RV+S ++ KA  A   N  + E+SAKE       F  I   A K +
Sbjct: 115 MLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171

Query: 181 PQEEE 185
               +
Sbjct: 172 GACSQ 176

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  174 bits (445), Expect = 1e-56
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F S+   + +     +LVY +   +SF ++   R++ +        E  P +++GNK D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + R VS  + +A  A +   P+ ETSAK    V+  F  I +
Sbjct: 121 E--SEREVSSSEGRAL-AEEWGCPFMETSAKSKTMVDELFAEIVR 162

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  174 bits (443), Expect = 2e-56
 Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI   +  K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + RVV +++ +       N  + E+SAK   NV   F  + +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  172 bits (439), Expect = 8e-56
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +             G  +  + +  +    +L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A     ++ P +++GNK+
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRA--RQTDDVPIILVGNKS 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + +
Sbjct: 117 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVR 160

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  172 bits (438), Expect = 3e-55
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 8/175 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF ++N +RE+        D ++ P V++GNK D+
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDL 138

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
               +R V  K+A    A    IP+ ETSAK    VE AF  + +   +   ++ 
Sbjct: 139 P---TRTVDTKQAHEL-AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  169 bits (430), Expect = 3e-54
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L +V++LGD GVGKTSL + +  ++  + +   +G D   + +  +    TL + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 68  ERFQSLGV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           E+        +  +G    V+VY +    SF++ +  R +          ++ P +++GN
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVGN 119

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           K D+     R VS ++ +A CA   +  + ETSA    NV   FE + +
Sbjct: 120 KADLA--RCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  168 bits (427), Expect = 1e-53
 Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
                    R  +  VLVYD+    SF+ +   +           P+N   +++GNK D+
Sbjct: 89  TIQRE-GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADL 144

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAKNALKNEPQE 183
           D  +SR VS ++ +   A++    ++E SA  G  N+   F  + +   +    +
Sbjct: 145 D--HSRQVSTEEGEK-LATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  166 bits (424), Expect = 3e-53
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            + ILG  G GK++L  +++ ++F ++Y   +   + + E   + +   L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            ++    +   A   ++VY V+  +SFD+ +++ E   + A  +   + P ++LGNK D+
Sbjct: 82  PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNKLDM 139

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAK 174
                R V++ +  A  A +    +FE SA   F +V+  F    +
Sbjct: 140 A--QYRQVTKAEGVAL-AGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  173 bits (439), Expect = 5e-52
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 19/186 (10%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV--------QFEDRLFTL 59
            +KV ++GD   GKTSL+ Q +   F  +   T G + +TK+           E +    
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
             WD  GQE   +    F   +   +L+ D    ++  N + W          S     P
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIEKYGGKS-----P 152

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            +V+ NK D +   S  + +KK      +  N  +   S K G  VE+  + +    L  
Sbjct: 153 VIVVMNKIDEN--PSYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHP 209

Query: 180 EPQEEE 185
           +     
Sbjct: 210 DSIYGT 215

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  163 bits (414), Expect = 2e-51
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 1   MASRRRMLL-KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR--- 55
           ++S       +V+++G+ GVGK++L N +     S       +G D   + +  +     
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
           +  L +W+  G+  +  L     +  D  ++VY +    SF+  +  R +          
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QT 143

Query: 116 ENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           E+ P +++GNK+D+     R VS  + +A CA   +  + ETSA    NV+  FE I + 
Sbjct: 144 EDIPIILVGNKSDLV--RCREVSVSEGRA-CAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200

Query: 176 ALKNEPQEEE 185
                  +E+
Sbjct: 201 VRLRRDSKEK 210

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  157 bits (399), Expect = 2e-49
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDR---LFTLQIWD 63
             +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
             G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILV 120

Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           GNK+D+     R VS  + +A  A   +  + ETSA    NV+  FE I +        +
Sbjct: 121 GNKSDLV--RXREVSVSEGRA-XAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

Query: 184 EE 185
           E+
Sbjct: 178 EK 179

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  142 bits (361), Expect = 1e-43
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y  +D  +L + VN   SFDN++  W  E +             V++G K 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE-IKHYID----TAKTVLVGLKV 137

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D+    S  V++++    C   G + Y E S+     +   FE        N+P 
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  130 bits (329), Expect = 1e-38
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+  +   +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L 
Sbjct: 4   MSVSKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLG 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  VL + +    S++N+   W  E L + +P    N P
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVP 115

Query: 120 FVVLGNKTD------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            V++G K D          ++ V++  + +      G   Y E S+K   NV+A F+   
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

Query: 174 KNALKNEPQEE 184
           K  L+   ++E
Sbjct: 176 KVVLQPPRRKE 186

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  126 bits (319), Expect = 2e-37
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114

Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D        +D   +  ++  + +      G   Y E S+K   NV+  F+ 
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

Query: 172 IAKNALK 178
             +  L+
Sbjct: 175 AIRVVLQ 181

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  126 bits (319), Expect = 3e-37
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 17/187 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            F  L    Y   D  +L + V    SF N    W  E +    P      P +++G ++
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE-IRCHCP----KAPIILVGTQS 134

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +D    + V E+ AK          Y E SA    N++  F+      +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 178 KNEPQEE 184
           +    ++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  126 bits (319), Expect = 4e-37
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   +    +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L   FY  A   +L +DV    SFDN+ N W  E +           P +V+G KT
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNHFCK----KVPIIVVGCKT 148

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       V+  + +    S G + Y E SA+   NV A F+  A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

Query: 178 KNEPQ 182
            +  +
Sbjct: 209 SSRGR 213

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  126 bits (317), Expect = 5e-37
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 20/189 (10%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +    +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    Y   D  ++ + ++   S +N+   W  E +    P    N P
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVP 131

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
            +++GNK D          +       V  ++ +          Y E SAK    V   F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

Query: 170 ECIAKNALK 178
           E   +  L+
Sbjct: 192 EMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  124 bits (314), Expect = 2e-36
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N    W  E +    P    N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 144

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       ++  +  A     G + Y E SA     ++  F+   +  L
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  122 bits (307), Expect = 1e-35
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N    W  E +    P    N P +++G K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 119

Query: 128 DV----------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+                 ++  +  A     G + Y E SA     ++  F+   +  L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 178 KNEPQ 182
              P 
Sbjct: 180 CPPPV 184

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  121 bits (306), Expect = 3e-35
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT L+  +   +F   Y  T+  ++   +++ + +   L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + V+   S +N+   W  E +    P    N P +++ NK 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE-VKHFCP----NVPIILVANKK 139

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       V     +A         Y E SAK    V   FE   + AL
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199

Query: 178 KNEPQ 182
           +    
Sbjct: 200 QKRYG 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  119 bits (300), Expect = 1e-34
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
                 ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L 
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           ++DTAGQE +  L    Y   D  ++ + V    SF N    W  E L + +P    N P
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-LKEYAP----NVP 124

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           F+++G + D          ++    + +  ++ +      G   Y E SA     ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

Query: 170 ECIAKNALK 178
           +      L 
Sbjct: 185 DEAIIAILT 193

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  115 bits (290), Expect = 7e-33
 Identities = 38/190 (20%), Positives = 81/190 (42%), Gaps = 18/190 (9%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAA 168
            +++G K+D          +       VS  +        G   Y E SA +   +V   
Sbjct: 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194

Query: 169 FECIAKNALK 178
           F       + 
Sbjct: 195 FHVATLACVN 204

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  114 bits (287), Expect = 1e-32
 Identities = 38/189 (20%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSL 59

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPF 120
           WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N   
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKM 114

Query: 121 VVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAF 169
           +++G K+D          +       VS  +        G   Y E SA +   +V   F
Sbjct: 115 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

Query: 170 ECIAKNALK 178
                  + 
Sbjct: 175 HVATLACVN 183

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  111 bits (279), Expect = 2e-31
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------TIGADFLTKEV- 50
           + R +  K++  G    GKT+ + +++  K     K            T+  DFL  ++ 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 51  QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE-EFLIQ 109
           + +       ++   GQ  + +      RG D  V V D    +   N  + R     + 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 ASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
                 ++ P V+  NK D+       +  +  +A    +G  P  E  A EG  V    
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 170 ECIAKNALKN 179
           + +++  L  
Sbjct: 184 KEVSRLVLAR 193

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  109 bits (274), Expect = 2e-30
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 18/187 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            + ++    Y  +D  +L +D++  ++ D+    WR E ++   P    +   +++G KT
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-ILDYCP----STRVLLIGCKT 141

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNA 176
           D          +       +S ++  A     G   Y E SA     ++ + F   +   
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201

Query: 177 LKNEPQE 183
           L      
Sbjct: 202 LNKPSPL 208

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  109 bits (274), Expect = 5e-30
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 71/224 (31%)

Query: 15  GDSGVGKTSLMNQYVNRK---FSNQYKATIG-ADFLTKEVQFEDRL-------------- 56
           G  G+GK+ L N++V      F   + + +  +DF  + V  +  L              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  FTLQIW-------DTAGQERFQSLGVAFYRGA---------------------------- 81
             + I        D   Q    +    + + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------DCCVLVYDV--NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
                    D  +L  DV   + ++FD+   +      Q         P VV+  K D  
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEG 211

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               R + +  A  +  SK N+   ETSA+   NV+ AF  + +
Sbjct: 212 --VERYIRD--AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 82.0 bits (202), Expect = 4e-19
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 17/189 (8%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +    + L+K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAG E +  L    Y   D  ++ + +    SF ++   W  E +    P    N P
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCP----NTP 261

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
            +++G K D          +       ++  +  A     G + Y E SA     ++  F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

Query: 170 ECIAKNALK 178
           +   +  L 
Sbjct: 322 DEAIRAVLC 330

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 78.9 bits (194), Expect = 4e-18
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 22/191 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA--DFLTKEVQFEDRLFTLQIWDTAGQ 67
           K++++G SG GK+S M   +   +S      +GA  D     ++F   + TL +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-TLNLWDCGGQ 62

Query: 68  ERF-----QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFLIQASPSDPENFPF 120
           + F            ++     + V+DV   +   ++  + +  + L + SP    +   
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKI 118

Query: 121 VVLGNKTDVDGGNSR------VVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            VL +K D+   + R      ++      +      N+  F TS  +  ++  A+  I  
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVC 177

Query: 175 NALKNEPQEEE 185
           + + N    + 
Sbjct: 178 SLIPNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 68.1 bits (166), Expect = 9e-15
 Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 25/179 (13%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++++G    GK+S+     ++   N+    ++T        ++         QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISN-SSFVNFQIWDFPG 78

Query: 67  QERFQSLGV---AFYRGADCCVLVYDVN--VMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           Q  F          +RG    + V D     M++   L+    +   + +P    +  F 
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNP----DMNFE 133

Query: 122 VLGNKTDVDGGNSRVVS----EKKAKAWCASKG----NIPYFETSAKEGFNVEAAFECI 172
           V  +K D    + ++ +     ++A    A  G    ++ ++ TS  +  ++  AF  +
Sbjct: 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKV 191

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 66.4 bits (163), Expect = 3e-14
 Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 25/180 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNK 126
           RF+S+   + RG    V + D     + D   +   + E          +  P +VLGNK
Sbjct: 79  RFRSMWERYCRGVSAIVYMVD-----AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133

Query: 127 TDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+ G  + + + EK      + +  C        +  S KE  N++   + + +++   
Sbjct: 134 RDLPGALDEKELIEKMNLSAIQDREIC-----C--YSISCKEKDNIDITLQWLIQHSKSR 186

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG  F  + + +++    L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y      + V D       D ++   +E  +     + ++   +V  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDST---DKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             G  ++  VS++      K ++W           +SA +G  +    + +     + +
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWS-------IVASSAIKGEGITEGLDWLIDVIKEEQ 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 31/178 (17%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +    N+  +++K      + + W           T A  G  +    + ++      
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWY-------IQATCATSGDGLYEGLDWLSNQLRNQ 163

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           V        +S+       K   W             A  G  +    E +       
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSRLKIR 179

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 28/177 (15%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++      +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +    +E        +  +   +V  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +        +++K      +++ W           T A +G  +    + ++    K
Sbjct: 142 MPNAMPVSELTDKLGLQHLRSRTWY-------VQATCATQGTGLYDGLDWLSHELSK 191

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           V        +S+       K   W             A  G  +    E +   
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSR 180

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V++LG    GKTS++ +            T+G     + +Q+++   + ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     ++   D  + V D       D +   + E        +      ++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDST---DRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +    +   ++E+        + W          ++S+K G  +    + + +   + 
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRTWT-------IVKSSSKTGDGLVEGMDWLVERLREQ 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       TIG  F  + V +++     Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y   D  + V D       D +   + E +      +      VV  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSC---DRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           ++    S  ++        K + W         F+TSA +G  ++ A E + +    
Sbjct: 120 MEQAMTSSEMANSLGLPALKDRKWQ-------IFKTSATKGTGLDEAMEWLVETLKS 169

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++           T+G  F  K ++     F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D         + + + E               ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSA---DRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           + G  +   + E       ++  W            SA  G ++    + +  +    
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWR-------IQGCSAVTGEDLLPGIDWLLDDISSR 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 28/184 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQY-VNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + V+ LG    GKT+++N+   +   S     TIG  F  ++ +      +  ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEF--LIQASPSDPENFPFVVL 123
            R+++L   +Y+     + V D     S D   +   +EE   L+          P +  
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132

Query: 124 GNKTDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
            NK D+     S  VS+       K K W           + A +G  ++   + +    
Sbjct: 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWH-------ICASDAIKGEGLQEGVDWLQDQI 185

Query: 177 LKNE 180
              +
Sbjct: 186 QTVK 189

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T G  F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNK 126
           + +    +++   D  + V D     S D        +E             P ++  NK
Sbjct: 72  KIRPYWRSYFENTDILIYVID-----SADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 127 TDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+     +  ++E       + + W            SA  G  V+     + KN    
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQ-------IQSCSALTGEGVQDGMNWVCKNVNAK 179

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 24/181 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +   Q+  T+     ++E+       T   +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNK 126
           + + +   +    +  V + D       D+  L   +EE     +     N P ++LGNK
Sbjct: 81  QARRVWKNYLPAINGIVFLVD-----CADHERLLESKEELDSLMTDETIANVPILILGNK 135

Query: 127 TDVDG--GNSRVVSEKKAKAWCASKGNIPY----------FETSAKEGFNVEAAFECIAK 174
            D        R+            KG++            F  S  +       F  +A+
Sbjct: 136 IDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195

Query: 175 N 175
            
Sbjct: 196 Y 196

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQI 61
           +R+     V+ +G    GKT L  + +  ++ +    +I     +   +   +R  +L +
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTL 58

Query: 62  WDTAGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFL---IQASPSDP 115
            D  G E     L   F   A   V V D     S       ++  EFL   +  S +  
Sbjct: 59  IDLPGHESLRFQLLDRFKSSARAVVFVVD-----SAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 116 ENFPFVVLGNKTDVDG 131
            +   ++  NK D+  
Sbjct: 114 NSPSLLIACNKQDIAM 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 52.8 bits (126), Expect = 9e-09
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 25/190 (13%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQE 68
           V+++G    GK+S + + V           + +   T     E    L  L + +  GQ 
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 69  RFQSLGV---AFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFLIQASPSDPENFPFVVL 123
            +          ++     V V D    +  + + N     E+  + +P    +    VL
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQ-DEYINAITNLAMIIEYAYKVNP----SINIEVL 112

Query: 124 GNKTDVDGGNSRVVSE--------KKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            +K D    + +V ++        ++          + ++ TS  +  ++  AF  I + 
Sbjct: 113 IHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQK 171

Query: 176 ALKNEPQEEE 185
            +      E 
Sbjct: 172 LIPELSFLEN 181

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 11/134 (8%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
                   +II G    GKTSL+              +           ++    TL   
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEP---LSAADYDGSGVTL--V 96

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNVMKSFDNLNNWREEF---LIQASPSDPEN 117
           D  G  + +     + +        L++ V+       L    E     L     S    
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 118 FPFVVLGNKTDVDG 131
              ++  NK+++  
Sbjct: 157 IDILIACNKSELFT 170

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   N + +   + T      ++E+   +       +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPE--NFPFVVLG 124
           + + L   ++   +  V + D     + D    +  R E    A  +  E  + PFV+LG
Sbjct: 79  QARRLWKDYFPEVNGIVFLVD-----AADPERFDEARVEL--DALFNIAELKDVPFVILG 131

Query: 125 NKTDVDGGNSRV-VSEK----KAKAWCASKGNIPY--FETSAKEGFNVEAAFECIAKN 175
           NK D     S   +               +G  P   F  S         AF+ +++ 
Sbjct: 132 NKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+         +  + T+ +        ++    TL   D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTL--VDFPGHVKL 68

Query: 71  QSLGVAFYRGA--DCCVLVYDVNVMKSFDNLNNWREEF---LIQASPSDPENFPFVVLGN 125
           +     + +        L++ V+       L    E     L     S       ++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 126 KTDVDG 131
           K+++  
Sbjct: 129 KSELFT 134

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 48/207 (23%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
               R++   +  +I G    GK++L+N  + ++     +A I     G   D++ +   
Sbjct: 224 YQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQE-----RA-IVSHMPGTTRDYIEECFI 277

Query: 52  FEDRLFTLQIWDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNVMKSFDN 98
            +      ++ DTAG        E     G+   R       AD  + + D+   +  D 
Sbjct: 278 HDK--TMFRLTDTAGLREAGEEIEH---EGIR--RSRMKMAEADLILYLLDLGTERLDDE 330

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
           L   RE  L  A P       F+ + NK D       ++                    S
Sbjct: 331 LTEIRE--LKAAHP----AAKFLTVANKLDRAANADALIRAIA------DGTGTEVIGIS 378

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEEE 185
           A  G  ++   + +       +   E 
Sbjct: 379 ALNGDGIDTLKQHMGDLVKNLDKLHEA 405

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 44/177 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G    GK+SL+N    R+      A I     G   D L + +  +     L I
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGRE-----AA-IVTDIAGTTRDVLREHIHIDG--MPLHI 56

Query: 62  WDTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA 110
            DTAG        ER   +G+         AD  + + D     + D    W E      
Sbjct: 57  IDTAGLREASDEVER---IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFI---- 109

Query: 111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167
               P   P  V+ NK D+ G               +          SA+ G  V+ 
Sbjct: 110 -ARLPAKLPITVVRNKADITG----------ETLGMSEVNGHALIRLSARTGEGVDV 155

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 32/185 (17%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +++ G   VGK+S MN  V +     S+   A    D + K ++    +  + + DT G 
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSD--YAGTTTDPVYKSMELHP-IGPVTLVDTPGL 93

Query: 68  ERFQSLG-------VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +    LG          +  ADC +LV D            + ++ +           PF
Sbjct: 94  DDVGELGRLRVEKARRVFYRADCGILVTDSAP-------TPYEDDVVNLFKEM---EIPF 143

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+ NK DV G        ++ K    S+        SA +    +   + I++      
Sbjct: 144 VVVVNKIDVLG-----EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL---- 194

Query: 181 PQEEE 185
           P +EE
Sbjct: 195 PGDEE 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 32/124 (25%)

Query: 5   RRMLLK------VIILGDSGVGKTSLMNQYVN-----RKFSNQ-YKATIGADFLTKEV-- 50
           R+ LL+      V+I G  G GKT +            K   + +   +      + V  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 51  --------------QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC-CVL--VYDVNVM 93
                            D    +++   + Q   + L +      +C  VL  V +    
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 94  KSFD 97
            +F+
Sbjct: 260 NAFN 263

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 45/204 (22%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
           A    +L   L+++I+G   VGK++L+N+ +N       +A I     G   D +++E+ 
Sbjct: 234 ADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNED-----RA-IVTDIPGTTRDVISEEIV 287

Query: 52  FEDRLFTLQIWDTAGQERFQS------LGV----AFYRGADCCVLVYDVNVMKSFDNLNN 101
                   +I DTAG  R ++      LG+         AD  + V D +        + 
Sbjct: 288 IRG--ILFRIVDTAGV-RSETNDLVERLGIERTLQEIEKADIVLFVLDAS--------SP 336

Query: 102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
             EE   +      +N  ++V+ NK DV    +    + K         +    + SA +
Sbjct: 337 LDEE--DRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALK 388

Query: 162 GFNVEAAFECIAKNALKNEPQEEE 185
           G  +E   E I +   +   +  +
Sbjct: 389 GEGLEKLEESIYRETQEIFERGSD 412

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL 99
           TIG  F  + V++++   +  +WD  GQ++ + L   +++     + V D N     + +
Sbjct: 196 TIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 248

Query: 100 NNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131
           N  REE +   +  +  +   +V  NK D+  
Sbjct: 249 NEAREELMRMLAEDELRDAVLLVFANKQDLPN 280

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 53/207 (25%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
             +  +L   LKV I+G   VGK+SL+N +         +A I     G   D +  ++ 
Sbjct: 215 KDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSD-----RA-IVTDLPGTTRDVVESQLV 268

Query: 52  FEDRLFTLQIWDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNVMKSFDN 98
                  +Q+ DTAG        E+   +GV   R       AD  +L  D         
Sbjct: 269 VGG--IPVQVLDTAGIRETSDQVEK---IGVE--RSRQAANTADLVLLTIDAA------- 314

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
              W      Q      ++ P +++ NK D+       V ++   +    +       T+
Sbjct: 315 -TGWTTG--DQEIYEQVKHRPLILVMNKIDL-------VEKQLITSLEYPENITQIVHTA 364

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEEE 185
           A +   +++    I +     + Q  +
Sbjct: 365 AAQKQGIDSLETAILEIVQTGKVQAAD 391

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 7/137 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAG 66
           L V + G++G GK+S +N         +  A  G   +T E        +  +  WD  G
Sbjct: 70  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                     +          YD  ++ S         +              F  +  K
Sbjct: 130 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFVRTK 184

Query: 127 TDVDGGNSRVVSEKKAK 143
            D D  N      +   
Sbjct: 185 VDSDITNEADGEPQTFD 201

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---FEDRLFTLQIWDTAG- 66
           V+I G   VGK++L+      K            F T+ +    FED  F  QI DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYP-----FTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 67  -----QERFQSLGVAFYRGAD-CCVLVY-------DVNVMKSFDNLNN-WREEFLIQASP 112
                 ER +    A         +++Y           ++   +L      EF      
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----- 279

Query: 113 SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SKGNIPYFETSAKEGFNVEAAFE 170
               + PF+V+ NK D       V  E+  K       +  +   + SA +G  ++   E
Sbjct: 280 ----DLPFLVVINKID-------VADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKE 328

Query: 171 CIAK--NALKNEPQEEE 185
            I K    L  +   E+
Sbjct: 329 EIIKTLRPLAEKVAREK 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.93
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.93
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.92
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.91
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.91
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.9
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.89
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.89
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.88
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.87
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.86
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.84
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.84
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.82
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.81
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.81
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.8
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.78
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.76
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.76
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.75
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.7
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.7
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.69
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.69
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.68
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.68
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.68
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.67
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.65
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.65
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.56
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.55
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.48
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.45
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.41
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.25
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.22
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.17
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.16
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.13
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.99
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.96
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.66
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.55
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.53
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.42
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.36
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.25
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.19
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.0
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.84
2xxa_A	433	Signal recognition particle protein; protein trans	97.84
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.72
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.66
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.66
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.65
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.63
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.63
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.57
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.56
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.56
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.55
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.55
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.54
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.53
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.52
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.51
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.51
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.49
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.48
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.47
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.47
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.47
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.46
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.45
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.44
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.44
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.43
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.42
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.42
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.42
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.42
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.41
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.41
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.4
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.39
1g6h_A	257	High-affinity branched-chain amino acid transport	97.39
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.39
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.38
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.38
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.37
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.37
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.37
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.37
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.36
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.36
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.36
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.36
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.36
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.36
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.36
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.35
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.35
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.35
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.35
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.34
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.32
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.32
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.32
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.31
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.31
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.31
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.3
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.3
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.3
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.3
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.3
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.29
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.29
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.29
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.29
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.29
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.29
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.28
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.28
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.27
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.26
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.25
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.25
1via_A	175	Shikimate kinase; structural genomics, transferase	97.24
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.24
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.24
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.24
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.23
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.23
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.22
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.22
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.22
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.21
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.21
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.21
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.2
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.2
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.19
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.19
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.19
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.19
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.19
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.18
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.18
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.16
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.16
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.16
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.16
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.16
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.15
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.15
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.15
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.14
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.14
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.14
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.14
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.13
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.13
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.13
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.12
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.11
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.11
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.11
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.11
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.1
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.1
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.1
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.09
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.08
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.06
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.06
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.05
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.04
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.04
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.04
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.02
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.01
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.97
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.96
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.96
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.95
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.94
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.94
3bos_A	242	Putative DNA replication factor; P-loop containing	96.93
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.93
2og2_A	359	Putative signal recognition particle receptor; nuc	96.92
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.89
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.88
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.88
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.87
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.86
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.86
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.85
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.85
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.84
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.84
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.84
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.82
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.78
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.78
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.77
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.76
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.76
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.74
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.72
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.72
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.7
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.7
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.7
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.69
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.68
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.68
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.67
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.66
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.65
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.65
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.65
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.62
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.61
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.6
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.6
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.58
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.55
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.55
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.53
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.53
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.51
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.5
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.5
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.49
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.48
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.47
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.47
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.47
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.47
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.46
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.45
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.45
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.45
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.44
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.44
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.41
2qgz_A	308	Helicase loader, putative primosome component; str	96.41
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.39
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.39
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.38
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.37
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.36
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.33
3co5_A	143	Putative two-component system transcriptional RES	96.33
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.32
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.32
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.3
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.28
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.27
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.26
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.26
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.26
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.25
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.24
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.22
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.22
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.21
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.21
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.21
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.2
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.18
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.18

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.6e-39  Score=222.65  Aligned_cols=166  Identities=37%  Similarity=0.636  Sum_probs=142.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+|+|.+|+|||||++++....+...+.+|.+.++.......++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++|+.+..|+..+......    ++|+++|+||+|+.+.  +.+..+++..++...+ ++|+++||++|.|++
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV~  164 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNVK  164 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCHH
Confidence            99999999999999999998876543    7899999999999765  7788999999999888 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ++|+.|++.+...
T Consensus       165 e~F~~i~~~i~~~  177 (216)
T 4dkx_A          165 QLFRRVAAALPGM  177 (216)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=6.1e-36  Score=202.09  Aligned_cols=180  Identities=64%  Similarity=1.061  Sum_probs=138.6

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR   79 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~   79 (185)
                      |+..+...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            66666778999999999999999999999998887788888888877777776 55678999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++|+|+|++++.+++.+..|+..+..........+.|+++|+||+|+... .+....++...++......+++++||
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc-cccCCHHHHHHHHHhcCCCeEEEEec
Confidence            99999999999999999999999998887765544557899999999999643 23456677777777555689999999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcCC
Q 029929          160 KEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ++|.|+++++++|.+.+.++++
T Consensus       160 ~~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999887643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.5e-36  Score=204.42  Aligned_cols=173  Identities=40%  Similarity=0.693  Sum_probs=121.9

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            55555678999999999999999999999888777778888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++|+|+|++++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....+++..++...+ ++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  153 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK  153 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence            9999999999999999999889888876543    26799999999999764  4566777888887777 899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|.|+++++++|.+.+..+.
T Consensus       154 ~~~~i~~l~~~l~~~i~~~~  173 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAKM  173 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999887653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.5e-36  Score=200.97  Aligned_cols=172  Identities=41%  Similarity=0.705  Sum_probs=147.9

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+|+|++|+|||||++++.+..+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            55566778999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++++|+|++++++++.+..|+..+.....     +.|+++|+||+|+...  +....++...++...+ ++++++||+
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK  153 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence            9999999999999999999999988876543     6799999999998764  4556677778877777 799999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|.|+++++++|.+.+...+
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~  173 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAK  173 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.7e-35  Score=200.13  Aligned_cols=171  Identities=39%  Similarity=0.692  Sum_probs=151.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            34579999999999999999999999998888889998889888888998889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....+....++...+ ++++++||++|.|
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  165 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN  165 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCCC
Confidence            9999999999999999998888776542    6799999999999865  5566777888888777 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      +++++++|.+.+..+...
T Consensus       166 v~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999877543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=7.6e-35  Score=200.71  Aligned_cols=173  Identities=37%  Similarity=0.664  Sum_probs=151.2

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            55555677999999999999999999999999888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++|+|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL  153 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence            9999999999999999999999888876542    26799999999999865  4556677777877776 899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|.|+++++++|.+.+.++.
T Consensus       154 ~g~gi~~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKESM  173 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=9.4e-35  Score=195.57  Aligned_cols=173  Identities=54%  Similarity=0.988  Sum_probs=148.5

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++.+++.+..|+..+..........+.|+++|+||+|+..   +....+++..++.....++++++||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            99999999999999999999888776554445789999999999973   456677788887755568999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +++++++|.+.+.+++
T Consensus       161 i~~l~~~l~~~~~~~~  176 (177)
T 1wms_A          161 VAAAFEEAVRRVLATE  176 (177)
T ss_dssp             HHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999988653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.1e-35  Score=202.08  Aligned_cols=177  Identities=77%  Similarity=1.243  Sum_probs=150.0

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            66667788999999999999999999999999888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++|+|+|++++.+++.+..|+..+..........+.|+++|+||+|+..   +....++...++.....++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK  157 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence            999999999999999999999998888776544444789999999999973   34566777777774555899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|.|+++++++|.+.+..++
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          158 EAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999887653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.1e-35  Score=200.33  Aligned_cols=173  Identities=36%  Similarity=0.655  Sum_probs=150.8

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            55555678999999999999999999999999888888888888888888888888899999999999999989999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++|+|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  155 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL  155 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence            9999999999999999999989888766543    27799999999999653  4556677778877776 899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcC
Q 029929          161 EGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +|.|+++++++|.+.+.++.
T Consensus       156 ~~~gi~~l~~~l~~~~~~~~  175 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNKI  175 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999888653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=8.9e-35  Score=196.79  Aligned_cols=169  Identities=29%  Similarity=0.526  Sum_probs=148.5

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      .+...++|+|+|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345679999999999999999999999988877788877666 6777788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec-cC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-EG  162 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~  162 (185)
                      +++|+|++++++++.+..|+..+.......   +.|+++|+||+|+.+.  +....+++..++...+ ++++++||+ ++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  166 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDPP  166 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCCCC
Confidence            999999999999999999988887654332   7799999999999764  5677888888888887 899999999 99


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      .|+++++++|.+.+.++
T Consensus       167 ~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          167 LNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             BSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhC
Confidence            99999999999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=6.7e-35  Score=196.96  Aligned_cols=171  Identities=35%  Similarity=0.645  Sum_probs=147.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|.+|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988887788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++.+++.+..|+..+.....    ++.|+++|+||+|+...  +....+++..++...+ ++++++||++|.|
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  161 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTATN  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence            999999999999999999988877643    26799999999999765  4566778888887776 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      +++++++|.+.+...++.
T Consensus       162 i~~l~~~l~~~~~~~~~~  179 (181)
T 2efe_B          162 VKEIFYEIARRLPRVQPT  179 (181)
T ss_dssp             HHHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999988766543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-35  Score=201.36  Aligned_cols=169  Identities=38%  Similarity=0.637  Sum_probs=148.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999988888888888888888888888899999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNV  176 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988876543    26799999999999754  4556677777777776 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++++|.+.+..+..
T Consensus       177 ~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          177 EKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999886543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=7.5e-35  Score=196.57  Aligned_cols=175  Identities=32%  Similarity=0.526  Sum_probs=147.9

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |.......++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            5455667799999999999999999999999888777777776664 666778888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++++|+|++++++++.+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ ++++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  154 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK  154 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence            99999999999999999998888888655432   26799999999999754  4456677777777666 899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCCc
Q 029929          161 EGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      +|.|+++++++|.+.+.+....
T Consensus       155 ~~~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999876554

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=7.5e-35  Score=198.57  Aligned_cols=168  Identities=38%  Similarity=0.682  Sum_probs=144.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|+
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACNV  171 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999899888876543    26799999999999754  4556777888887776 89999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      ++++++|.+.+.++.
T Consensus       172 ~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          172 EEAFINTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.5e-35  Score=200.13  Aligned_cols=170  Identities=35%  Similarity=0.572  Sum_probs=141.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45699999999999999999999999887777888888887888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....+++..++...+..+++++||++|.|+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            99999999999999999988876642    36799999999999754  4566778888888777339999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++++|.+.+..+..
T Consensus       181 ~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          181 EEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.3e-34  Score=195.04  Aligned_cols=166  Identities=37%  Similarity=0.677  Sum_probs=146.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999988777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....+++.+++...+ ++++++||++|.|+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGENV  165 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            999999999999999998888766432    6799999999999654  4556777888887776 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029929          166 EAAFECIAKNALK  178 (185)
Q Consensus       166 ~~~~~~i~~~~~~  178 (185)
                      ++++++|.+.+.+
T Consensus       166 ~~l~~~l~~~i~~  178 (179)
T 1z0f_A          166 EDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.3e-34  Score=195.72  Aligned_cols=170  Identities=31%  Similarity=0.449  Sum_probs=146.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3568999999999999999999998888877788887766 667778888899999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+......   .+.|+++|+||+|+...  +....+++..++...+ ++++++||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA  156 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCCH
Confidence            999999999999999999888776543   26799999999999765  6677888888888887 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCc
Q 029929          166 EAAFECIAKNALKNEPQ  182 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~~  182 (185)
                      ++++++|.+.+...+..
T Consensus       157 ~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          157 VDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-35  Score=199.37  Aligned_cols=170  Identities=41%  Similarity=0.656  Sum_probs=146.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+|+|.+|+|||||++++++..+.....++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            35679999999999999999999999988777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....+++..++...+ ++++++||+++.|
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g  172 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKNAIN  172 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTTTBS
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence            999999999999999999988876642    26799999999999753  4566778888888776 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+.+..+
T Consensus       173 i~~l~~~l~~~i~~~~~  189 (192)
T 2fg5_A          173 IEELFQGISRQIPPLDP  189 (192)
T ss_dssp             HHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHHHHHhhCC
Confidence            99999999998876554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2e-34  Score=196.13  Aligned_cols=167  Identities=35%  Similarity=0.660  Sum_probs=147.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            45699999999999999999999999988777888888887788888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENINV  172 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence            99999999999999889888876642    26799999999999754  4556677888888777 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|.+.+.++
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-34  Score=196.98  Aligned_cols=171  Identities=35%  Similarity=0.609  Sum_probs=148.4

Q ss_pred             ccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCc
Q 029929            3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (185)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   82 (185)
                      ......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            33445699999999999999999999999988888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      ++|+|+|++++.+++.+..|+..+.....   ..+.|+++|+||+|+..   +....++...++...+ ++++++||+++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTC  162 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCCC
Confidence            99999999999999999888888765432   23679999999999954   4456677777877776 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcC
Q 029929          163 FNVEAAFECIAKNALKNE  180 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~  180 (185)
                      .|+++++++|.+.+.+..
T Consensus       163 ~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          163 DGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             TTHHHHHHHHHHHHHTSG
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.9e-34  Score=196.09  Aligned_cols=171  Identities=28%  Similarity=0.526  Sum_probs=147.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            45699999999999999999999999988777788776664 45667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      +|+|++++++++.+ ..|...+.....     +.|+++|+||+|+.....+....+++..++...+...++++||++|.|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            99999999999997 667777765532     679999999999987655777888899998888733499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      +++++++|.+.+..+++.
T Consensus       175 i~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          175 LNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             HHHHHHHHHHHHHCSCC-
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1e-34  Score=194.09  Aligned_cols=166  Identities=37%  Similarity=0.639  Sum_probs=140.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999999888778888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+......    +.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  156 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKGI  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCCH
Confidence            999999999999999898887665432    6799999999999754  4556777888888776 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029929          166 EAAFECIAKNALK  178 (185)
Q Consensus       166 ~~~~~~i~~~~~~  178 (185)
                      ++++++|.+.+.+
T Consensus       157 ~~l~~~l~~~~~~  169 (170)
T 1z08_A          157 EELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.1e-34  Score=192.48  Aligned_cols=167  Identities=38%  Similarity=0.692  Sum_probs=140.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999887888888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++.+++.+..|+..+.....    .+.|+++|+||+|+..   +....++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  153 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN  153 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            9999999999999899888877653    2679999999999943   4456677777877776 899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 029929          167 AAFECIAKNALKNEP  181 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (185)
                      +++++|.+.+.++.+
T Consensus       154 ~l~~~l~~~~~~~~~  168 (170)
T 1g16_A          154 EIFFTLAKLIQEKID  168 (170)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-34  Score=192.61  Aligned_cols=169  Identities=40%  Similarity=0.678  Sum_probs=138.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ...++|+++|.+|+|||||++++.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            45799999999999999999999998875 45678888888777778888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  160 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGLN  160 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence            999999999999999999888876653    27799999999999864  4556677777777776 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+.+++.
T Consensus       161 i~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          161 VDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999886654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.4e-34  Score=193.33  Aligned_cols=166  Identities=39%  Similarity=0.665  Sum_probs=145.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34579999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++++++.+..|+..+.....    ++.|+++|+||+|+...  +....++...++...+ ++++++||++|.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence            999999999999999889888876543    26799999999999754  4456677777777766 8999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029929          165 VEAAFECIAKNAL  177 (185)
Q Consensus       165 i~~~~~~i~~~~~  177 (185)
                      +++++++|.+.+.
T Consensus       156 i~~l~~~i~~~~~  168 (170)
T 1r2q_A          156 VNEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=198.81  Aligned_cols=169  Identities=38%  Similarity=0.676  Sum_probs=140.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999888777788888888888888888889999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  ++...++...++.....++++++||++|.|
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            999999999999999888887766543    26799999999999754  455667778887776558999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 029929          165 VEAAFECIAKNALKN  179 (185)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (185)
                      +++++++|.+.+.++
T Consensus       177 i~~l~~~l~~~i~~~  191 (192)
T 2il1_A          177 VDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=4e-34  Score=193.94  Aligned_cols=167  Identities=25%  Similarity=0.427  Sum_probs=142.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|.+|+|||||++++++..+...+.++. ..+ ...+.+++..+.+.+|||+|++.+.     +++.+|++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            3567999999999999999999999998887666663 333 4677788888999999999988766     77889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|||++++++++.+..|+..+.....   ..+.|+++|+||+|+.....+....+++..++...+.++++++||++|.|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999889888865432   23679999999999976555778888899999888768999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+..+++
T Consensus       167 v~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          167 VERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999987754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-35  Score=200.96  Aligned_cols=170  Identities=35%  Similarity=0.641  Sum_probs=150.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....+||+|+|.+|+|||||+++|++..+.....++.+.+.....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            35679999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  172 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENIS  172 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence            999999999999999999988876542    27799999999999754  5566777888888777 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+.++..
T Consensus       173 i~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          173 VRQAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.3e-34  Score=191.96  Aligned_cols=165  Identities=33%  Similarity=0.702  Sum_probs=145.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+....     .+.|+++|+||+|+...  +....+++..++...+ ++++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  154 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence            9999999999999988988887765     26799999999999754  4456677778877777 79999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029929          166 EAAFECIAKNALK  178 (185)
Q Consensus       166 ~~~~~~i~~~~~~  178 (185)
                      ++++++|.+.+.+
T Consensus       155 ~~l~~~l~~~~~~  167 (168)
T 1z2a_A          155 SEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-34  Score=192.46  Aligned_cols=165  Identities=38%  Similarity=0.644  Sum_probs=144.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999988877888888888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-ceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-SRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      +|++++.+++.+..|+..+.....    .+.|+++|+||+|+.... .++...+....++...+ ++++++||++|.|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  157 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVN  157 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            999999999999889888877652    267999999999997542 24556677777777766 899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029929          167 AAFECIAKNAL  177 (185)
Q Consensus       167 ~~~~~i~~~~~  177 (185)
                      +++++|.+.+.
T Consensus       158 ~l~~~l~~~i~  168 (170)
T 1ek0_A          158 DVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.8e-34  Score=191.86  Aligned_cols=167  Identities=21%  Similarity=0.304  Sum_probs=131.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-cccchhccCcEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL   86 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~   86 (185)
                      .++|+++|++|+|||||++++.+........++.+.+.....+.+++..+.+.+||+||+..+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998776666666666777778888888899999999999988776 66777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......   .+.|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccC---CCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence            99999999999999999988776543   26799999999999754  5677788888888877 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      +++++|.+.+..++
T Consensus       156 ~l~~~l~~~i~~~r  169 (169)
T 3q85_A          156 ELFEGAVRQIRLRR  169 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.2e-34  Score=190.61  Aligned_cols=165  Identities=38%  Similarity=0.655  Sum_probs=145.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.++|+++|++|+|||||++++.+..+.....++.+.+.......+.+....+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45699999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+.....    +..|+++|+||+|+...  ++...++...++...+ ++++++||+++.|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  156 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAINI  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence            99999999999999888888876532    36799999999999754  4556677777877776 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029929          166 EAAFECIAKNAL  177 (185)
Q Consensus       166 ~~~~~~i~~~~~  177 (185)
                      ++++++|.+.++
T Consensus       157 ~~l~~~i~~~i~  168 (170)
T 1z0j_A          157 NELFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.9e-34  Score=195.79  Aligned_cols=170  Identities=41%  Similarity=0.671  Sum_probs=146.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE-EEEEEECCc---------EEEEEEecCCChhhhcccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSLG   74 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~   74 (185)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+.+.+.         .+.+.+|||||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            456799999999999999999999998888777888887776 556666655         7899999999999999989


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ..+++.+|++|+|+|++++.+++.+..|+..+......   .+.|+++|+||+|+...  +....+++..++...+ +++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~  161 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IPY  161 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CCE
Confidence            99999999999999999999999998998888766532   26799999999999754  4556677888877776 799


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +++||+++.|+++++++|.+.+.++.
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-34  Score=195.04  Aligned_cols=167  Identities=34%  Similarity=0.668  Sum_probs=146.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45699999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....+....++...+ ++++++||++|.|+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  158 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINV  158 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCCH
Confidence            99999999999999889888876542    26799999999999764  4566777888888777 79999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|.+.+.++
T Consensus       159 ~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          159 KQTFERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=196.46  Aligned_cols=172  Identities=20%  Similarity=0.293  Sum_probs=140.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-cccchhccCcE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADC   83 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~   83 (185)
                      ....++|+|+|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|+..+.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            35679999999999999999999976554434455666666677778888889999999999887654 66778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +|+|||++++++++.+..|+..+......   .+.|+++|+||+|+...  +.+..++...++...+ ++++++||+++.
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~  173 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHH  173 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCCC
Confidence            99999999999999999999888765432   26799999999999764  4566777888887776 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCc
Q 029929          164 NVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~~  182 (185)
                      |+++++++|++.+..++.+
T Consensus       174 ~v~~lf~~l~~~i~~~~~~  192 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLRRGR  192 (195)
T ss_dssp             SHHHHHHHHHHHHHTTC--
T ss_pred             CHHHHHHHHHHHHHHhcCC
Confidence            9999999999999876544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=197.76  Aligned_cols=168  Identities=36%  Similarity=0.627  Sum_probs=137.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45699999999999999999999998888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi  175 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV  175 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999888876543    26799999999999754  4456677777777776 89999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      ++++++|.+.+..+.
T Consensus       176 ~~l~~~l~~~i~~~~  190 (200)
T 2o52_A          176 EEAFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=5e-34  Score=194.13  Aligned_cols=167  Identities=37%  Similarity=0.636  Sum_probs=142.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-ccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~   84 (185)
                      ...++|+|+|.+|+|||||+++|++..+.....++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            456999999999999999999999998888788888888888888888888999999999999888 7788899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--  162 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--  162 (185)
                      |+|+|++++.+++.+..|+..+......   .+.|+++|+||+|+...  ++...++...++...+ ++++++||+++  
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~  171 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPND  171 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCCc
Confidence            9999999999999999999988876533   26799999999999754  4556777788877776 89999999999  


Q ss_pred             -CCHHHHHHHHHHHHhh
Q 029929          163 -FNVEAAFECIAKNALK  178 (185)
Q Consensus       163 -~~i~~~~~~i~~~~~~  178 (185)
                       .|+++++++|.+.+.+
T Consensus       172 ~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GSCHHHHHHHHC-----
T ss_pred             ccCHHHHHHHHHHHHhh
Confidence             9999999999987753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.8e-34  Score=189.85  Aligned_cols=164  Identities=30%  Similarity=0.547  Sum_probs=141.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888777777776555 35566777788999999999999998999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+......   .+.|+++|+||+|+.+.  +....++...++...+..+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence            9999999999998888888776432   36799999999999754  455677788888777558999999999999999


Q ss_pred             HHHHHHHHHh
Q 029929          168 AFECIAKNAL  177 (185)
Q Consensus       168 ~~~~i~~~~~  177 (185)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=193.90  Aligned_cols=167  Identities=34%  Similarity=0.663  Sum_probs=146.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45699999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+....    ..+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  175 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTNV  175 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTS----CTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            9999999999999888888876543    236799999999999754  4456677778877766 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|.+.+.++
T Consensus       176 ~~l~~~l~~~i~~~  189 (193)
T 2oil_A          176 ELAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=198.49  Aligned_cols=169  Identities=35%  Similarity=0.656  Sum_probs=140.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45699999999999999999999999988778888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  163 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV  163 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988876642    26799999999999754  4556677778877766 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++++|.+.+..+..
T Consensus       164 ~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          164 DKAFEELINTIYQKVS  179 (223)
T ss_dssp             HHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.3e-34  Score=192.53  Aligned_cols=165  Identities=38%  Similarity=0.652  Sum_probs=144.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||++|.|++
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNVK  165 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT----TSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence            9999999999999999888876543    26799999999999754  4556677777777776 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      +++++|.+.+..
T Consensus       166 ~l~~~l~~~~~~  177 (179)
T 2y8e_A          166 QLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=197.72  Aligned_cols=171  Identities=31%  Similarity=0.460  Sum_probs=140.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            3569999999999999999999999998877777777666 566666777789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.....   ..++|+++|+||+|+...  +....++...++...+ ++++++||++|.|+
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  174 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHG---KTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence            99999999999999999888875432   236799999999999754  5566777888888777 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcc
Q 029929          166 EAAFECIAKNALKNEPQE  183 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~  183 (185)
                      ++++++|.+.+.......
T Consensus       175 ~~l~~~l~~~i~~~~~~~  192 (201)
T 3oes_A          175 QGIFTKVIQEIARVENSY  192 (201)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhhhhhh
Confidence            999999999998776543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-34  Score=195.72  Aligned_cols=172  Identities=22%  Similarity=0.442  Sum_probs=142.0

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      |+......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            555556779999999999999999999999988877777776665 4456677788999999999999999899999999


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhc
Q 029929           81 ADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASK  149 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~  149 (185)
                      +|++|+|+|++++++++.+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..+++..++...
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            9999999999999999998 678887766542     6799999999999742          12456677888888877


Q ss_pred             CCCcEEEeeec-cCCCHHHHHHHHHHHHhh
Q 029929          150 GNIPYFETSAK-EGFNVEAAFECIAKNALK  178 (185)
Q Consensus       150 ~~~~~~~~s~~-~~~~i~~~~~~i~~~~~~  178 (185)
                      +.++++++||+ ++.|+++++++|.+.+..
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            65799999999 689999999999998875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.7e-34  Score=192.80  Aligned_cols=172  Identities=33%  Similarity=0.518  Sum_probs=145.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      ....++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34579999999999999999999999887766777887778778888776 56899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      +++|+|++++++++.+..|+..+........  +.| +++|+||+|+.+.  +....++...++...+ ++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE--TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT--CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccC--CCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence            9999999999999999888888776532110  335 8999999999754  4456677778877776 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCC
Q 029929          163 FNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~~  181 (185)
                      .|+++++++|.+.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHhhhh
Confidence            9999999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=7.9e-34  Score=191.31  Aligned_cols=167  Identities=22%  Similarity=0.399  Sum_probs=138.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++.     ..+++.+|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            356999999999999999999999988776 566666444 56677788888999999999875     45778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+....... ..+.|+++|+||+|+.....+....+++..++...+.++++++||++|.|+
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999988876665554322 237899999999999654446677888888887765589999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      ++++++|.+.+...+
T Consensus       157 ~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=195.33  Aligned_cols=168  Identities=34%  Similarity=0.584  Sum_probs=135.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||++++++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            45699999999999999999999999887777888888888888888888899999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----NSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      +|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...    ..+.+..+....++...+ ++++++||++
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~  180 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAH----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKD  180 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence            99999999999999888887766543    26799999999999631    224566777778877776 7999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029929          162 GFNVEAAFECIAKNALK  178 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (185)
                      |.|+++++++|.+.+..
T Consensus       181 g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.8e-33  Score=187.45  Aligned_cols=165  Identities=32%  Similarity=0.539  Sum_probs=138.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999887766666665544 4455678888899999999999988889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+.......   +.|+++|+||+|+...  ++...++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence            999999999999999988888766432   6799999999999754  4466777888877776 799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      +++++|.+.+.+
T Consensus       156 ~l~~~l~~~i~~  167 (168)
T 1u8z_A          156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=189.01  Aligned_cols=168  Identities=26%  Similarity=0.388  Sum_probs=130.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--hcccccchhccCcEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC   84 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~d~~   84 (185)
                      ..++|+++|++|+|||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||||+..  +......+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            468999999999999999999998876543 34455666667777888888999999999877  455667788899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~g  155 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQHN  155 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCCC
Confidence            999999999999999888887765422   236799999999999765  4556667777777766 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+..++.
T Consensus       156 i~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          156 VAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1e-33  Score=196.20  Aligned_cols=171  Identities=22%  Similarity=0.404  Sum_probs=143.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            4569999999999999999999999998888788887666 455667778889999999999999999999999999999


Q ss_pred             EEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|||++++++++. +..|+..+.....     +.|+++|+||+|+...          ..+.+..++...++...+..++
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            9999999999998 6888888877642     6799999999999752          1256778888899888883399


Q ss_pred             EEeeeccCCC-HHHHHHHHHHHHhhcCCc
Q 029929          155 FETSAKEGFN-VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       155 ~~~s~~~~~~-i~~~~~~i~~~~~~~~~~  182 (185)
                      +++||++|.| ++++|++|.+.+..+...
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            9999999998 999999999998876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=193.69  Aligned_cols=167  Identities=31%  Similarity=0.530  Sum_probs=143.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||+..+...+..+++.+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4568999999999999999999999888777777776554 456677888889999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.......   +.|+++|+||+|+...  +....+++..++...+ ++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV  164 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence            9999999999999999988887765432   6799999999999764  4566777888887776 79999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|.+.+..+
T Consensus       165 ~~l~~~l~~~i~~~  178 (206)
T 2bov_A          165 DKVFFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.6e-33  Score=190.90  Aligned_cols=168  Identities=31%  Similarity=0.529  Sum_probs=143.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            4569999999999999999999999888777667665544 455667778889999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++++++.+..|+..+.......   +.|+++|+||+|+...  +....+++..++...+ ++++++||+++.|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV  168 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCH
Confidence            9999999999999999988888766532   6799999999999754  4466777888887776 79999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      ++++++|.+.+..++
T Consensus       169 ~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          169 DKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.4e-33  Score=186.82  Aligned_cols=165  Identities=24%  Similarity=0.349  Sum_probs=119.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|.+|+|||||++++.+..... ..++.+.+. .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            4899999999999999999998766442 233444333 45567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+.  +....++...++...+ ++++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQ---TDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA  153 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence            999999999999999888775432   237899999999999865  5667777788877776 8999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 029929          168 AFECIAKNALKNE  180 (185)
Q Consensus       168 ~~~~i~~~~~~~~  180 (185)
                      ++++|.+.+..++
T Consensus       154 l~~~l~~~~~~~r  166 (166)
T 3q72_A          154 LFEGVVRQIRLRR  166 (166)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999987653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.6e-33  Score=188.99  Aligned_cols=167  Identities=26%  Similarity=0.474  Sum_probs=142.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            3569999999999999999999999988777777776554 455667777889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+....          .+....++...++...+..++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  169 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  169 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence            999999999999986 68888776532     67999999999997642          135667788888888774599


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhh
Q 029929          155 FETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++||++|.|+++++++|.+.+..
T Consensus       170 ~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          170 VECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=5.2e-33  Score=191.04  Aligned_cols=165  Identities=32%  Similarity=0.588  Sum_probs=142.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE-----------------------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-----------------------------   56 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   56 (185)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            456999999999999999999999998888888888878777777766544                             


Q ss_pred             --------EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           57 --------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        57 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                              ..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....      +.|+++|+||+|
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D  158 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKID  158 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTT
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCC
Confidence                    889999999999999999999999999999999999999999888888887653      369999999999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                       ...  +....+++..++...+ ++++++||++|.|+++++++|.+.+.++.
T Consensus       159 -~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          159 -KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             -ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence             322  4566788888888776 79999999999999999999999988653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=2e-33  Score=187.14  Aligned_cols=164  Identities=32%  Similarity=0.527  Sum_probs=140.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|++|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999887776666665433 56677788888999999999999888888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++.+++.+..|+..+......   .+.|+++|+||+|+...  ++...++...++...+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHH
Confidence            9999999999998888888776543   26799999999999754  4556677777777776 8999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      ++++|.+.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6.7e-33  Score=191.76  Aligned_cols=166  Identities=39%  Similarity=0.700  Sum_probs=144.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+..   +....++...++...+ ++++++||+++.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTT----TCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999889888876643    2679999999999943   4456677777777776 79999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|.+.+.++
T Consensus       170 ~~l~~~l~~~~~~~  183 (213)
T 3cph_A          170 NEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=4.9e-34  Score=198.15  Aligned_cols=168  Identities=43%  Similarity=0.711  Sum_probs=142.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc----------EEEEEEecCCChhhhccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~   75 (185)
                      .+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+.          .+.+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45699999999999999999999998887777777777777777777665          78899999999999999999


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      .+++.+|++|+|+|++++.+++.+..|+..+....   ...+.|+++|+||+|+...  +....+++..++...+ ++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~  176 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYF  176 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcEE
Confidence            99999999999999999999998888777654322   1247899999999999754  4556777888887776 8999


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhc
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ++||+++.|+++++++|.+.+.++
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1e-32  Score=187.33  Aligned_cols=165  Identities=33%  Similarity=0.571  Sum_probs=139.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            469999999999999999999999887776666664 4445666778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......   .+.|+++|+||+|+..   .....+....++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~  154 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGVD  154 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence            99999999999999998888776443   3679999999999974   4456677778877777 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      +++++|.+.+...
T Consensus       155 ~l~~~l~~~~~~~  167 (189)
T 4dsu_A          155 DAFYTLVREIRKH  167 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=190.25  Aligned_cols=167  Identities=24%  Similarity=0.417  Sum_probs=138.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+... ..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            4569999999999999999999999988877778877665 455667888899999999999887764 56889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee-ccCCC
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGFN  164 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~  164 (185)
                      +|||++++++++.+..|+..+...... ...+.|+++|+||+|+...  +....+++..++...+ ++++++|| ++|.|
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g~g  172 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDFEH  172 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCcccc
Confidence            999999999999999999888766421 0126799999999999654  5567778888888877 79999999 89999


Q ss_pred             HHHHHHHHHHHHhh
Q 029929          165 VEAAFECIAKNALK  178 (185)
Q Consensus       165 i~~~~~~i~~~~~~  178 (185)
                      +++++++|.+.+.+
T Consensus       173 v~~lf~~l~~~i~~  186 (187)
T 3c5c_A          173 VQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.2e-33  Score=189.42  Aligned_cols=168  Identities=21%  Similarity=0.443  Sum_probs=141.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777777776655 34566778889999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCc
Q 029929           85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP  153 (185)
Q Consensus        85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (185)
                      |+|+|++++++++.+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..++...++...+..+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            999999999999998 678887766532     6799999999999742          124566778888888777679


Q ss_pred             EEEeeec-cCCCHHHHHHHHHHHHhh
Q 029929          154 YFETSAK-EGFNVEAAFECIAKNALK  178 (185)
Q Consensus       154 ~~~~s~~-~~~~i~~~~~~i~~~~~~  178 (185)
                      ++++||+ ++.|+++++++|.+.+.+
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999999 689999999999998875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.6e-33  Score=188.18  Aligned_cols=170  Identities=25%  Similarity=0.481  Sum_probs=142.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999888777667765444 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEE
Q 029929           87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      |+|++++.+++.+. .|+..+.....     +.|+++|+||+|+....          .+....++...++...+..+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  157 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  157 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            99999999999886 68777766532     67999999999997542          1345667777788777745999


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      ++||++|.|+++++++|.+.+.+....
T Consensus       158 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          158 ECSALTQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred             EecCCCccCHHHHHHHHHHHHhccccc
Confidence            999999999999999999999876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=191.19  Aligned_cols=170  Identities=27%  Similarity=0.448  Sum_probs=136.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            4579999999999999999999998887766677775444 456677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+....          .+....++...++...+..++
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            999999999999986 68887776542     67999999999997531          245667778888887774599


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +++||++|.|+++++++|.+.+...+.
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999886643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=190.28  Aligned_cols=168  Identities=26%  Similarity=0.458  Sum_probs=142.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4569999999999999999999999988777777776554 45566788888999999999887 667788889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC-C
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-N  164 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~  164 (185)
                      +|+|++++++++.+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ ++++++||++|. |
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN  177 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence            999999999999998888888765432   26799999999999764  4566777888887776 899999999999 9


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+.++++
T Consensus       178 i~~l~~~l~~~i~~~~~  194 (196)
T 2atv_A          178 ITEIFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999999887643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-33  Score=190.77  Aligned_cols=170  Identities=23%  Similarity=0.341  Sum_probs=133.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC   83 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~   83 (185)
                      ...++|+++|.+|+|||||++++.+.... ....++++.+.....+.+++..+.+.+|||+|+.. +..+...+++.+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            45699999999999999999999964431 22234466666667777888888999999999776 44556677889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +|+|||++++++++.+..|+..+.....   ..++|+++|+||+|+...  +.+..++...++...+ ++++++||++|.
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~g~  188 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQH  188 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            9999999999999999888877654321   236799999999999753  4455666677776666 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 029929          164 NVEAAFECIAKNALKNEP  181 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~  181 (185)
                      |++++|++|++.+..++.
T Consensus       189 ~v~elf~~l~~~i~~~~~  206 (211)
T 2g3y_A          189 NVKELFEGIVRQVRLRRD  206 (211)
T ss_dssp             SHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999999999876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-32  Score=189.82  Aligned_cols=171  Identities=25%  Similarity=0.479  Sum_probs=137.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34689999999999999999999999887777777765554 33667778889999999999999988899999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++++++.+ ..|...+.....     +.|+++|+||+|+.....          +....++...++...+..++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY  176 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence            99999999999988 667777766432     679999999999975421          23556677777777774589


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      +++||++|.|+++++++|.+.+..++..
T Consensus       177 ~~~SA~~g~gi~el~~~l~~~i~~~~~~  204 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETATRAALQKRYG  204 (207)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHSCCCC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999876543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.6e-32  Score=188.44  Aligned_cols=167  Identities=25%  Similarity=0.512  Sum_probs=140.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45689999999999999999999999888777777776664 34667788889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++++++.+ ..|...+.....     +.|+++|+||+|+.....          +....++...++...+..++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            99999999999988 667777765432     679999999999976421          34556777888887774589


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhh
Q 029929          155 FETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++||++|.|+++++++|.+.+.+
T Consensus       177 ~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=4.9e-32  Score=184.36  Aligned_cols=168  Identities=32%  Similarity=0.533  Sum_probs=131.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            3569999999999999999999999887766666665443 456667778889999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+.......   +.|+++|+||+|+..   +....+++..++...+ ++++++||+++.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  170 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            9999999999999988888887665422   679999999999976   3455677788887777 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      ++++++|.+.+...+.
T Consensus       171 ~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          171 EDAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-33  Score=191.88  Aligned_cols=170  Identities=31%  Similarity=0.548  Sum_probs=140.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3569999999999999999999999888777777776554 445667778889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc------eeecHHHHHHHHHhcCCCcEEEee
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS------RVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+.....      ..+..++...++...+..+++++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            999999999999986 78888776542     679999999999976411      123567777888877745999999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcCC
Q 029929          159 AKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      |++|.|+++++++|.+.+...+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC--
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhh
Confidence            99999999999999999986653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=8.8e-33  Score=191.51  Aligned_cols=170  Identities=33%  Similarity=0.537  Sum_probs=122.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3569999999999999999999998887766666665444 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+.....          +.+..++...++...+..++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  185 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY  185 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence            999999999999986 68887766542     679999999999976421          24566777888887774599


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +++||++|.|+++++++|.+.+.+.+.
T Consensus       186 ~~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          186 LECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.7e-32  Score=179.43  Aligned_cols=163  Identities=32%  Similarity=0.567  Sum_probs=138.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .++|+++|.+|+|||||++++.+..+.....++.+... ...+...+..+.+.+||+||+..+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            48999999999999999999999887766666665433 45566777888999999999998888888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++.+++.+..|+..+.......   +.|+++|+||+|+..   +....+....++...+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED  154 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence            99999999999988988887765432   679999999999976   3455677777777776 8999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      ++++|.+.+.+
T Consensus       155 l~~~l~~~~~~  165 (166)
T 2ce2_X          155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=5.1e-33  Score=193.14  Aligned_cols=170  Identities=31%  Similarity=0.505  Sum_probs=141.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      +...++|+|+|.+|+|||||+++|++..+...+.++.+...........+ ..+.+.+|||||++.+...+..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            45679999999999999999999998888777777777666666655444 34789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +|+|+|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....+....++...+ ++++++||++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~  160 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTAH  160 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTTB
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCCC
Confidence            99999999999999999998888776543    5799999999999764  4566677777766665 899999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 029929          164 NVEAAFECIAKNALKNEP  181 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~  181 (185)
                      |+++++++|.+.+.....
T Consensus       161 gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          161 NFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTTHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.4e-33  Score=193.20  Aligned_cols=170  Identities=27%  Similarity=0.489  Sum_probs=108.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEECCc--EEEEEEecCCChhhhcccccchhccCc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGAD   82 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d   82 (185)
                      ..++|+|+|.+|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++.+|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            4589999999999999999999988  666677777777777777888776  889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (185)
                      ++|+|+|++++.+++.+..|+..+....... ..+.|+++|+||+|+.. .  +....+++..++...+ ++++++||++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~  174 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKAWFELLKSARPDR-ERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSANP  174 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCSCT-TSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC--
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhccc-ccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccCC
Confidence            9999999999999999999999887765410 12679999999999976 3  4566778888888777 8999999999


Q ss_pred             -CCCHHHHHHHHHHHHhhcC
Q 029929          162 -GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 -~~~i~~~~~~i~~~~~~~~  180 (185)
                       +.|+++++++|.+.+.++.
T Consensus       175 ~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             -----CHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHH
Confidence             9999999999999887543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=184.32  Aligned_cols=168  Identities=26%  Similarity=0.413  Sum_probs=137.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||+..+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            458999999999999999999999887766667665444 3445667777899999999999888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......  ..+.|+++|+||+|+...  ++....+...++...+ ++++++||++|.|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  155 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence            99999999999888888877665431  136799999999999754  3455666677777666 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      +++++|.+.+..++
T Consensus       156 ~l~~~l~~~~~~~~  169 (172)
T 2erx_A          156 ELFQELLNLEKRRT  169 (172)
T ss_dssp             HHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999998776543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=201.55  Aligned_cols=168  Identities=40%  Similarity=0.720  Sum_probs=136.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35679999999999999999999999888877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|+|++++++++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~g  182 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN  182 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---HH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence            999999999999999888888754432    36799999999999765  3444455666667666 8999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 029929          165 VEAAFECIAKNALKN  179 (185)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (185)
                      +++++++|.+.+..+
T Consensus       183 v~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          183 VEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-32  Score=186.09  Aligned_cols=169  Identities=26%  Similarity=0.429  Sum_probs=140.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||+..+...+..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34569999999999999999999999888776667766444 34456677788999999999999888888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++++++.+..|+..+......  ..+.|+++|+||+|+..   +....++...++...+ ++++++||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  157 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYN  157 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCC
Confidence            9999999999999988887776655322  12679999999999975   3455667777777766 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 029929          165 VEAAFECIAKNALKNE  180 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (185)
                      +++++++|.+.+..++
T Consensus       158 i~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          158 VKELFQELLTLETRRN  173 (199)
T ss_dssp             HHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3.2e-32  Score=187.39  Aligned_cols=165  Identities=25%  Similarity=0.464  Sum_probs=136.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4569999999999999999999999888777667665 344556667788889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++.+++.+. .|+..+....     .+.|+++|+||+|+.....          +....++...++...+..++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence            999999999999986 6877777654     2679999999999976421          23566778888888876679


Q ss_pred             EEeeeccCCCHHHHHHHHHHHH
Q 029929          155 FETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      +++||++|.|+++++++|.+.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=7.3e-33  Score=192.79  Aligned_cols=167  Identities=28%  Similarity=0.610  Sum_probs=142.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....++|+++|.+|+|||||+++++...+...+.++.+.+.......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            35679999999999999999999777666667778888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      ++|+|++++.+++.+..|+..+.....     +.|+++|+||+|+.+....    .+...++...+ ++++++||++|.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~-~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN-LQYYDISAKSNYN  161 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSSC----GGGCCHHHHHT-CEEEECBGGGTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCcccccccc----HHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            999999999999999999998887643     6799999999999764221    13334445555 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 029929          165 VEAAFECIAKNALKNEP  181 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~  181 (185)
                      +++++++|.+.+.....
T Consensus       162 i~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TTHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=8e-33  Score=186.90  Aligned_cols=167  Identities=29%  Similarity=0.509  Sum_probs=124.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45689999999999999999999998877666666654332 22344556678889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--------eeecHHHHHHHHHhcCCCcEEE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--------RVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +|+|++++++++.+. .|+..+.....     +.|+++|+||+|+.+...        .....++...++...+..++++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999986 68887776532     679999999999976421        1235677778887777459999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhh
Q 029929          157 TSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +||++|.|+++++++|.+.+..
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.2e-32  Score=188.26  Aligned_cols=168  Identities=21%  Similarity=0.301  Sum_probs=130.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCcceeeeEEEEE-EECCcEEEEEEecCCChhhhcc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQS   72 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~~   72 (185)
                      +...++|+++|.+|+|||||++.+.+.. ...+           .++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            3567999999999999999997776544 3232           2344434333333 4566778999999999999999


Q ss_pred             cccchhccCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929           73 LGVAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC  146 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  146 (185)
                      .+..+++.+|++|+|+|++      +.++++.+..|+..+.     ....+.|+++|+||+|+.+.    ...+++..++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~  160 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA----LPVEMVRAVV  160 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC----CCHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc----cCHHHHHHHH
Confidence            9999999999999999999      4556666666666542     22347899999999999764    6677888888


Q ss_pred             HhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          147 ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       147 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      ...+..+++++||++|.|+++++++|.+.+.++.++
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            777733999999999999999999999999876543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=4.9e-32  Score=185.52  Aligned_cols=174  Identities=19%  Similarity=0.305  Sum_probs=128.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      ....++|+|+|.+|+|||||+++|++..+.. .+.++.+....  .+  ....+.+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            3567899999999999999999999998877 66777764333  22  3455789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCceeecHHHHH-HHHHhcCCCcEEEee
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASP----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCASKGNIPYFETS  158 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s  158 (185)
                      +|+|+|++++++++.+..|+..+......    ....+.|+++|+||+|+..........+... ........++++++|
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  169 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASN  169 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEee
Confidence            99999999999999998888877654111    0112679999999999986522111111111 111122347899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcCCc
Q 029929          159 AKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      |++|.|+++++++|.+.+..+...
T Consensus       170 a~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          170 GLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             CCCccCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999876543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=4.8e-31  Score=179.90  Aligned_cols=168  Identities=23%  Similarity=0.345  Sum_probs=130.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC   83 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~   83 (185)
                      ...++|+++|.+|+|||||++++.+.... ....++++.+.....+.+++..+.+.+|||+|+.. .......+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            35689999999999999999999964321 22234456666667778888888999999999765 45566778889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +++|||++++++++.+..|+..+.....   ..+.|+++|+||+|+...  +....++...++...+ ++++++||++|.
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g~  157 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQH  157 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTT---TSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccCC
Confidence            9999999999999999888887765432   236799999999999753  4455666666666665 799999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 029929          164 NVEAAFECIAKNALKN  179 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (185)
                      |++++|++|.+.+..+
T Consensus       158 ~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          158 NVKELFEGIVRQVRLR  173 (192)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999988654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.3e-31  Score=179.09  Aligned_cols=163  Identities=20%  Similarity=0.310  Sum_probs=125.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+.. ..++.+..  ...+.+.  ...+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            346899999999999999999999887653 45555433  3344444  478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++....++..+.....   ..+.|+++|+||+|+.+..    ...++......    ...++++++||++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAM----TSSEMANSLGLPALKDRKWQIFKTSATK  152 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCC----CHHHHHHHhCchhccCCceEEEECcCCC
Confidence            99999999999988877776654321   2367999999999997642    12222222111    1235899999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 029929          162 GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~  180 (185)
                      |.|+++++++|.+.+.+++
T Consensus       153 ~~gi~~l~~~l~~~i~~~q  171 (171)
T 1upt_A          153 GTGLDEAMEWLVETLKSRQ  171 (171)
T ss_dssp             CTTHHHHHHHHHHHHHTCC
T ss_pred             CcCHHHHHHHHHHHHhhcC
Confidence            9999999999999987653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=2.3e-32  Score=185.84  Aligned_cols=163  Identities=23%  Similarity=0.381  Sum_probs=127.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++..  +.  ...+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            356999999999999999999999988877777777766543  22  34578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+....    ..+++......    ...++++++||++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~  168 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGAL----DEKELIEKMNLSAIQDREICCYSISCKE  168 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCC----CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence            99999999999998888877654321   2377999999999997642    12222221111    1235789999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 029929          162 GFNVEAAFECIAKNALKN  179 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (185)
                      |.|+++++++|.+.+..+
T Consensus       169 g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          169 KDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             CTTHHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999877654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.98  E-value=1.5e-31  Score=181.41  Aligned_cols=162  Identities=18%  Similarity=0.311  Sum_probs=127.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+.. ...+.++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999999887 55566666533  3344444  478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+....   ...+.|+++|+||+|+....    ..++..+....    ...++++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVT  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCCC----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence            9999999999999888887776432   12367999999999997642    22333332211    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 029929          162 GFNVEAAFECIAKNALKN  179 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (185)
                      |.|+++++++|.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.7e-31  Score=181.29  Aligned_cols=164  Identities=18%  Similarity=0.261  Sum_probs=123.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+. .+.++.+...  ..+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999987765 4555555333  3334443  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+...    ...+++.+....    ...++++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC----CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            99999999999999888887765321   136799999999999753    223333333321    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCC
Q 029929          162 GFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~~  181 (185)
                      |.|+++++++|.+.+....+
T Consensus       162 g~gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC---
T ss_pred             CcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=7.6e-32  Score=179.20  Aligned_cols=159  Identities=16%  Similarity=0.303  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      ++|+++|++|+|||||++++.+..+.. +.|+.+..  ...+..  ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 45555532  333333  4478999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCC
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFN  164 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~  164 (185)
                      |++++++++.+..|+..+....   ...+.|+++|+||+|+.+..    ..++.......    ...++++++||++|.|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  148 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSGDG  148 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCCC----CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence            9999999998888877765432   22367999999999997642    12222221111    1235799999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 029929          165 VEAAFECIAKNALKN  179 (185)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (185)
                      +++++++|.+.+..+
T Consensus       149 i~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          149 LYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=4.5e-31  Score=180.85  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=118.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+. .+.++.+..  ...+.+++  ..+.+|||||++.++..+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34589999999999999999999987754 344555443  33445555  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----------------
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----------------  149 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----------------  149 (185)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+..    ....+++..+....                
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE----AISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc----cCCHHHHHHHhCcccccccccccccccccC
Confidence            99999999999999888887764321   23679999999999975    24455666655421                


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      ..++++++||++|.|+++++++|.+.
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            23689999999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.3e-31  Score=181.05  Aligned_cols=163  Identities=22%  Similarity=0.332  Sum_probs=121.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+. .+.++.+..  ...+.++  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987543 334555432  3344444  478899999999999888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+....   ...+.|+++|+||+|+.+..    ..+++......    ...++++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccCC----CHHHHHHHhCchhccCCceEEEEccCCC
Confidence            9999999999998888777664321   22367999999999997642    12233222111    1236799999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 029929          162 GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~  180 (185)
                      |.|+++++++|.+.+.+++
T Consensus       162 g~gi~~l~~~l~~~~~~~~  180 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNVNAKK  180 (181)
T ss_dssp             CTTHHHHHHHHHHTC----
T ss_pred             CCCHHHHHHHHHHHHHhcc
Confidence            9999999999998876543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.5e-30  Score=177.20  Aligned_cols=158  Identities=21%  Similarity=0.308  Sum_probs=123.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.++|+++|++|+|||||++++.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            34589999999999999999999988765 344555443  44555555  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----------cCCCcE
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~  154 (185)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+...    ...+++.+....           ...+++
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence            99999999999999888887764322   236799999999999752    344555554432           123679


Q ss_pred             EEeeeccCCCHHHHHHHHHHH
Q 029929          155 FETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +++||++|.|+++++++|.+.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999999764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=175.93  Aligned_cols=164  Identities=18%  Similarity=0.287  Sum_probs=126.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ...++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  ..+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            456999999999999999999999877 4555555555  3344444443  6889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--hc--CCCcEEEeeec
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK--GNIPYFETSAK  160 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~s~~  160 (185)
                      ++|+|++++++++.+..|+..+...... ...+.|+++|+||+|+...    ...+++.+...  ..  ..++++++||+
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            9999999999999988888877654321 0136799999999999753    23444544442  11  23689999999


Q ss_pred             cCCCHHHHHHHHHHHHhh
Q 029929          161 EGFNVEAAFECIAKNALK  178 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~  178 (185)
                      +|.|+++++++|.+.+..
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.4e-31  Score=181.35  Aligned_cols=161  Identities=16%  Similarity=0.303  Sum_probs=118.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||+++++...+. .+.++.+  .....+..  ..+.+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45699999999999999999999987755 3344444  33333433  3478999999999999988889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+....   ...+.|+++|+||+|+....    ..+++......    ...++++++||++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~  174 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ  174 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence            9999999999999888887765432   12367999999999997641    12222221111    1125799999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 029929          162 GFNVEAAFECIAKNALK  178 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (185)
                      |.|+++++++|.+.+.+
T Consensus       175 g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          175 GTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             TBTHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999988754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2.3e-31  Score=179.87  Aligned_cols=158  Identities=19%  Similarity=0.285  Sum_probs=121.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||+++|.+..+ ....++.+...  ..+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999998887 44455555443  3334443  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+...    ...+++......    ...++++++||++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            99999999999998888877764321   236799999999999763    223333333211    1235899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAKN  175 (185)
Q Consensus       162 ~~~i~~~~~~i~~~  175 (185)
                      |.|+++++++|.+.
T Consensus       167 g~gi~~l~~~l~~~  180 (181)
T 2h17_A          167 GEGLCQGLEWMMSR  180 (181)
T ss_dssp             TBTHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=2.1e-29  Score=172.63  Aligned_cols=166  Identities=37%  Similarity=0.684  Sum_probs=140.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46899999999999999999999998887778888888888888889888899999999999888888888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|+.+..+++.+..|+..+.....    .+.|+++++||+|+.+.  +....++++.++...+ +.++++||+++.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i~  156 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNVE  156 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence            9999999999888888877654422    26799999999999754  4455667777877766 889999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      +++++|.+.+...
T Consensus       157 ~l~~~l~~~~~~~  169 (199)
T 2f9l_A          157 EAFKNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-31  Score=180.09  Aligned_cols=163  Identities=18%  Similarity=0.316  Sum_probs=122.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|++|+|||||++++.+..+ ..+.++.+..  ...+.++  ...+.+|||||+..+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4579999999999999999999997765 3445555533  3334444  378999999999999989999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..|+..+....   ...+.|+++|+||+|+.+.    ...+++.......    ..++++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA----LSASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC----CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            9999999999998888877765432   2337899999999999764    2233333332211    125799999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 029929          162 GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~  180 (185)
                      |.|+++++++|.+.+.+++
T Consensus       164 ~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhcc
Confidence            9999999999999987653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=4e-31  Score=179.76  Aligned_cols=163  Identities=16%  Similarity=0.276  Sum_probs=124.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++....+.. +.++.+..  ...+.++  ...+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            457999999999999999999998776543 44555433  3334443  478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~  161 (185)
                      +|+|++++++++.+..++..+...   ....+.|+++|+||+|+....    ..++......    ....++++++||++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDE---DELRKSLLLIFANKQDLPDAA----SEAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTC---STTTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhh---hhcCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            999999999999887777766543   223478999999999997642    1222222111    11135799999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 029929          162 GFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~~  180 (185)
                      +.|+++++++|.+.+.++.
T Consensus       168 ~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhcc
Confidence            9999999999999997764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.7e-29  Score=185.48  Aligned_cols=168  Identities=24%  Similarity=0.470  Sum_probs=140.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3458999999999999999999999888777777765444 555677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++.+++.+. .|...+.....     ++|+++|+||+|+....          .+....++...++...+..++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  306 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  306 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence            999999999999886 67777766543     67999999999996531          145667788888888774599


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +++||++|.|+++++++|.+.+...
T Consensus       307 ~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=2e-30  Score=175.72  Aligned_cols=167  Identities=26%  Similarity=0.411  Sum_probs=119.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEE---CCcEEEEEEecCCChhhhcccccchhccCc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   82 (185)
                      .++|+++|++|||||||++++.+.  .+...+.++.+.++....+.+   .+..+.+.+|||+|++.+......+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  344455667766665554433   234678899999999999888888999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec---HHHHHHHHHhcCCCc----E
Q 029929           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS---EKKAKAWCASKGNIP----Y  154 (185)
Q Consensus        83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~----~  154 (185)
                      ++++|+|++++ .+++.+..|+..+....     ++.|+++|+||+|+...  +...   .+....++...+ ++    +
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~  153 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY  153 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence            99999999997 57888888988876653     26799999999999753  2211   122333433334 55    8


Q ss_pred             EEeeeccCC-CHHHHHHHHHHHHhhcCCc
Q 029929          155 FETSAKEGF-NVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       155 ~~~s~~~~~-~i~~~~~~i~~~~~~~~~~  182 (185)
                      +++||+++. +++++++.|.+.+......
T Consensus       154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~  182 (184)
T 2zej_A          154 HFVNATEESDALAKLRKTIINESLNFKIR  182 (184)
T ss_dssp             EECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred             EEEecccCchhHHHHHHHHHHHHhccccC
Confidence            999999997 9999999999988876543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.4e-28  Score=167.62  Aligned_cols=164  Identities=38%  Similarity=0.707  Sum_probs=141.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|+.|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            35689999999999999999999999888888889888888888888988888999999999888888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|..+..+++.+..|+..+.....    .+.|+++++||+|+.+.  +....+.++.++...+ +.++++|++++.|+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v  179 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV  179 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999888778776654322    25699999999999753  3455667788877766 88999999999999


Q ss_pred             HHHHHHHHHHH
Q 029929          166 EAAFECIAKNA  176 (185)
Q Consensus       166 ~~~~~~i~~~~  176 (185)
                      ++++++|.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=2.6e-29  Score=169.03  Aligned_cols=165  Identities=20%  Similarity=0.175  Sum_probs=122.3

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      .....++|+++|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            345679999999999999999999999888776666666666555566665  467799999999999998899999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC--------CCcEE
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--------NIPYF  155 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~  155 (185)
                      +++|+|++++....... .+..+.   .    .+.|+++|+||+|+....     .+..........        .++++
T Consensus        82 ~i~v~d~~~~~~~~~~~-~l~~~~---~----~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVE-AINHAK---A----ANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFC  148 (178)
T ss_dssp             EEEEEETTCCCCHHHHH-HHHHHG---G----GSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred             EEEEEECCCCCcHHHHH-HHHHHH---h----CCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEE
Confidence            99999998843222221 112221   1    267999999999997631     222222222211        14799


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      ++||++|.|+++++++|.+.+...+...
T Consensus       149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~~~  176 (178)
T 2lkc_A          149 KLSAKTKEGLDHLLEMILLVSEMEELKA  176 (178)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHTTTTS
T ss_pred             EEecCCCCCHHHHHHHHHHhhhhhcccc
Confidence            9999999999999999999988766544

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=4.9e-30  Score=175.42  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=118.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccc---cchhcc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLG---VAFYRG   80 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~~~~~   80 (185)
                      ....+||+++|.+|+|||||++++.+.. ......+...........+. +..+.+.+|||||++.+....   ..+++.
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCC-CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcC-CCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            4567999999999999999999887653 32222222222222222232 566789999999999887776   789999


Q ss_pred             CcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----ceeecHHHHHHHHH----hc
Q 029929           81 ADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-----SRVVSEKKAKAWCA----SK  149 (185)
Q Consensus        81 ~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~----~~  149 (185)
                      +|++|+|||++++  ++++.+..|+..+....     .+.|+++|+||+|+....     .+.+..+....++.    ..
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-----TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            9999999999997  66666666666654322     277999999999987632     13344445556665    33


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      + ++++++||++ .|++++|..|++.+
T Consensus       171 ~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 H-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             C-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             C-cceEEEEech-hhHHHHHHHHHHHh
Confidence            4 7899999999 99999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=2.7e-29  Score=173.91  Aligned_cols=167  Identities=19%  Similarity=0.258  Sum_probs=115.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc-EEEEEEecCCChhhhcc-cccchhccCc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGAD   82 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~d   82 (185)
                      +...++|+++|.+|+|||||++++++..+...+. +++.....  +.+++. .+.+.+|||||+..+.. .+..+++.+|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            3556999999999999999999999988766554 33333332  555544 57899999999998887 7788899999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--------------
Q 029929           83 CCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--------------  147 (185)
Q Consensus        83 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--------------  147 (185)
                      ++|+|+|+++.+ ++.....++..+..... ....+.|+++|+||+|+..........+.+.....              
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence            999999999853 45555444443332211 11226799999999999865333333333332222              


Q ss_pred             -------hcC-------------CCcEEEeeeccC------CCHHHHHHHHHHH
Q 029929          148 -------SKG-------------NIPYFETSAKEG------FNVEAAFECIAKN  175 (185)
Q Consensus       148 -------~~~-------------~~~~~~~s~~~~------~~i~~~~~~i~~~  175 (185)
                             ..+             .++|++|||++|      .|+++++++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                   011             467999999999      9999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=3.9e-32  Score=186.89  Aligned_cols=165  Identities=25%  Similarity=0.486  Sum_probs=131.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4569999999999999999999998877666666654433 344556667788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (185)
                      +|+|++++.+++.+. .|+..+.....     +.|+++|+||+|+.....          +....++...++...+..++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
Confidence            999999999998886 67666644322     679999999999975421          13444556666666663489


Q ss_pred             EEeeeccCCCHHHHHHHHHHHH
Q 029929          155 FETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      +++||++|.|+++++++|.+.+
T Consensus       182 ~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=186.08  Aligned_cols=161  Identities=16%  Similarity=0.278  Sum_probs=117.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..++|+|+|.+|+|||||+++|.+..+... .+|.+..+  ..+.  ...+.+.+|||||++.+...+..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998875433 34444333  2233  344789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (185)
                      |+|++++++++.+..++..+....   ...++|+++|+||+|+....    ..+++......    ...++++++||++|
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc----CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            999999999998877776665432   22377999999999998642    22222222211    12357999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 029929          163 FNVEAAFECIAKNALKN  179 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (185)
                      .|+++++++|.+.+.++
T Consensus       312 ~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          312 DGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTHHHHHHHHHHHHTC-
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            99999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=7.2e-29  Score=169.28  Aligned_cols=161  Identities=19%  Similarity=0.183  Sum_probs=109.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~   75 (185)
                      ...++|+|+|.+|+|||||++++++..+.....++.+.+........+.   .+.+|||||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            3569999999999999999999998875544445544444444444443   588999999          677777777


Q ss_pred             chhccC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           76 AFYRGA---DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        76 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      .+++.+   |++++|+|++++.++.... +...+..       .+.|+++|+||+|+..........+++.+........
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            777766   9999999999877666532 2222221       2679999999999986532222223344322223347


Q ss_pred             cEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          153 PYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      +++++||++|.|+++++++|.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=9.1e-29  Score=179.75  Aligned_cols=167  Identities=19%  Similarity=0.256  Sum_probs=126.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-----cccccchhccC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFYRGA   81 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~   81 (185)
                      .+||+++|.+|+|||||++++++.... ....+..+.+.....+.+.+ .+.+.+|||||++.+     ...+..+++.+
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            489999999999999999999887433 11123333333344444444 579999999999888     67788888999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----ecHHHHHHHHHhcC--CCcEE
Q 029929           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----VSEKKAKAWCASKG--NIPYF  155 (185)
Q Consensus        82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~~~~  155 (185)
                      |++|+|+|++++++++.+..|...+......  .++.|+++|+||+|+.....+.    ...+++..++...+  .++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~  159 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF  159 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence            9999999999999999987775554433211  2267999999999998643344    55577788888776  38999


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhh
Q 029929          156 ETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ++||++ .++.+++..+++.+.+
T Consensus       160 ~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          160 PTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             ECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EeeecC-ChHHHHHHHHHHHHcC
Confidence            999999 8999999998876654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.96  E-value=3.9e-28  Score=165.49  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~   75 (185)
                      ...++|+++|.+|+|||||++++++.... ...++.+.+..........   .+.+|||||          +..+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999988733 2334433333333333332   467999999          666666666


Q ss_pred             chhccC---cEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929           76 AFYRGA---DCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG  150 (185)
Q Consensus        76 ~~~~~~---d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (185)
                      .+++.+   |++++|+|+++..+...  +..|+...          +.|+++|+||+|+..........+.+..++...+
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            676655   99999999987543332  22333322          6799999999999876555666667777777666


Q ss_pred             CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .++++++||++|.|+++++++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            6899999999999999999999998864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=7.5e-28  Score=168.24  Aligned_cols=166  Identities=18%  Similarity=0.064  Sum_probs=112.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh---------cccccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~   76 (185)
                      ...++|+|+|.+|+|||||+++|++..+.....+..+.+.........+  ..+.+|||||+...         ......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4568999999999999999999998876533334444444444444333  67899999997321         111233


Q ss_pred             hhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecH---HHHHHHHHhcC-
Q 029929           77 FYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSE---KKAKAWCASKG-  150 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~-  150 (185)
                      ++..+|++|+|+|++++.+++.  ...|+..+...     ..+.|+++|+||+|+....  ....   +....++...+ 
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMD--SLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCS
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCch--hhHHHHHHHHHHHHHhcCC
Confidence            4678899999999999877642  23444444322     1267999999999998642  2222   23445544432 


Q ss_pred             CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          151 NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .++++++||++|.|+++++++|.+.+...+
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            268999999999999999999999887653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=2.4e-28  Score=162.69  Aligned_cols=153  Identities=12%  Similarity=0.161  Sum_probs=110.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc--
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR--   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--   79 (185)
                      .++|+++|++|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .....+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998776555556655555555565554  578999999987654      23344554  


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++|+|+++.+.   ...|+..+...       +.|+++|+||+|+........   +...++...+ ++++++||
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~~SA  146 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSLGIEI---DVDKLEKILG-VKVVPLSA  146 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHTTCCC---CHHHHHHHHT-SCEEECBG
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhccccChhh---HHHHHHHHhC-CCEEEEEc
Confidence            7999999999997543   34455555431       679999999999864311111   2455555566 79999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKNA  176 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~  176 (185)
                      ++|.|+++++++|.+.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.8e-29  Score=178.09  Aligned_cols=165  Identities=24%  Similarity=0.302  Sum_probs=117.5

Q ss_pred             cceeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCccCcc-eeeeEEEE--------------EEECCcEEE
Q 029929            6 RMLLKVIILGDS---------GVGKTSLMNQYVN---RKFSNQYKATI-GADFLTKE--------------VQFEDRLFT   58 (185)
Q Consensus         6 ~~~~~i~viG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~   58 (185)
                      ...+||+|+|.+         |+|||||+++|++   ..+...+.+++ +.++....              ..+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            456999999999         9999999999998   44545555544 32221111              123456678


Q ss_pred             EEEec-----------------------CCChhhhcccccchhc---------------------cCcEEEEEEECCCh-
Q 029929           59 LQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNVM-   93 (185)
Q Consensus        59 ~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~-   93 (185)
                      +.+||                       ++|++.+...+..++.                     .+|++|+|+|++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       5555666666666666                     79999999999998 


Q ss_pred             -hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHH
Q 029929           94 -KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI  172 (185)
Q Consensus        94 -~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i  172 (185)
                       ++++.+..|+..+......   .+.|+++|+||+|+...  +.  .++...++.....++++++||++|.|+++++++|
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence             9999999998888765211   16799999999999643  22  2466666665434899999999999999999999


Q ss_pred             HHHHh
Q 029929          173 AKNAL  177 (185)
Q Consensus       173 ~~~~~  177 (185)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=4e-28  Score=164.82  Aligned_cols=159  Identities=21%  Similarity=0.225  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------hhhhcccccch
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF   77 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~   77 (185)
                      ++|+++|.+|+|||||++++.+..+...+.++.+......  ...    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999887766666655443322  222    678999999           66667777777


Q ss_pred             hcc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929           78 YRG-ADCCVLVYDVNVMKSFDNL-NNWREE--------FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (185)
Q Consensus        78 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (185)
                      ++. ++++++|+++.+..+++.+ ..|...        +......   .+.|+++|+||+|+....     .+....++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-----~~~~~~~~~  147 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV-----QEVINFLAE  147 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH-----HHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH-----HHHHHHHHH
Confidence            766 6666666666666677665 444432        2222111   267999999999998642     455666666


Q ss_pred             hcCC------CcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          148 SKGN------IPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       148 ~~~~------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ..+.      .+++++||++|.|+++++++|.+.+.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            6652      247999999999999999999999887654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=5.4e-27  Score=170.42  Aligned_cols=166  Identities=20%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----------ccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG   74 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~   74 (185)
                      ...-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.+|||||+....          ...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            445789999999999999999999988753 333444444434444333 14689999999975433          455


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCc
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP  153 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  153 (185)
                      ..+++.+|++++|+|+++..+......|+..+..       .+.|+++|+||+|+...  ..........+.... ...+
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTCCC
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCCCe
Confidence            6778899999999999998777776555665543       26799999999999732  344455666666665 4578


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          154 YFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ++++||++|.|+++++++|.+.+++...
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~  185 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPEGEP  185 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence            9999999999999999999999876543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=2e-27  Score=157.31  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhcc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~   80 (185)
                      ++|+++|++|+|||||++++.+..+. ....++.+.+.....+...+  ..+.+|||||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988754 23344444555555555555  3788999999776       33445567889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      +|++++|+|++++.+...  .++......      .+.|+++|+||+|+....      ++...+. ..+..+++++||+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~~~~~~~Sa~  144 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE------LYLGPLY-GLGFGDPIPTSSE  144 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG------GGCGGGG-GGSSCSCEECBTT
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch------HhHHHHH-hCCCCCeEEEecc
Confidence            999999999998543322  222222221      167999999999997541      2223333 4453389999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029929          161 EGFNVEAAFECIAKNA  176 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (185)
                      +|.|+++++++|.+.+
T Consensus       145 ~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          145 HARGLEELLEAIWERL  160 (161)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHhC
Confidence            9999999999998875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=1.6e-27  Score=159.75  Aligned_cols=156  Identities=22%  Similarity=0.298  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccchh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFY   78 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   78 (185)
                      .++|+++|.+|+|||||++++.+.... ....++++.++....+.+++  ..+.+|||||+..+...        ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            479999999999999999999987643 23345555566666666665  35789999997543211        12357


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      +.+|++++|+|++++.+++. ..|+..+.....    .++|+++|+||+|+........          .....+++++|
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~----------~~~~~~~~~~S  146 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP----AKLPITVVRNKADITGETLGMS----------EVNGHALIRLS  146 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCEEE----------EETTEEEEECC
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc----cCCCEEEEEECccCCcchhhhh----------hccCCceEEEe
Confidence            89999999999999877653 466666655432    2679999999999864321111          01236899999


Q ss_pred             eccCCCHHHHHHHHHHHHhhcC
Q 029929          159 AKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |++|.|+++++++|.+.+....
T Consensus       147 A~~g~gv~~l~~~l~~~~~~~~  168 (172)
T 2gj8_A          147 ARTGEGVDVLRNHLKQSMGFDT  168 (172)
T ss_dssp             TTTCTTHHHHHHHHHHHC----
T ss_pred             CCCCCCHHHHHHHHHHHhhhcc
Confidence            9999999999999998876544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.3e-27  Score=160.95  Aligned_cols=159  Identities=12%  Similarity=0.139  Sum_probs=118.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR   79 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~   79 (185)
                      ...++|+++|++|+|||||++++++........++.+.+.....+.+.+  ..+.+|||||+..+.      .....++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3568999999999999999999998765555556666666666666654  688999999987664      23444553


Q ss_pred             --cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           80 --GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        80 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                        .+|++++|+|.++   ++....|...+..       .+.|+++|+||+|+.......   .....++...+ ++++++
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~~  148 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE---IDVDKLEKILG-VKVVPL  148 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEEC
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch---HHHHHHHHHhC-CCeEEE
Confidence              5999999999985   4445556665543       267999999999986432111   23455555566 799999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ||+++.|+++++++|.+.+....
T Consensus       149 Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          149 SAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             EecCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999987665

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.95  E-value=1.2e-27  Score=166.48  Aligned_cols=166  Identities=14%  Similarity=0.066  Sum_probs=110.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCcceeeeEEEEEEEC-CcEEEEEEecCCCh----------hhhcc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS   72 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~   72 (185)
                      ...++|+|+|.+|+|||||+++|++...  .....+..+..  ....... .....+.+|||||.          +.+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH--INYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC--EEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc--eEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            3468999999999999999999998863  22223333333  2333333 34467889999993          33445


Q ss_pred             cccchhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929           73 LGVAFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (185)
Q Consensus        73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  149 (185)
                      ....++..   +|++++|+|+++..+... ..++..+..       .+.|+++|+||+|+..........+.+.......
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            55555555   788999999987543222 334444432       2679999999999986422222233333333332


Q ss_pred             ------CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          150 ------GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       150 ------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                            ...+++++||++|.|+++++++|.+.+.....
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence                  45789999999999999999999999876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.95  E-value=1.1e-27  Score=169.68  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc----------cccchh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY   78 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~   78 (185)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+.+.+.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            58999999999999999999998766666677777777777776653  788999999766553          344555


Q ss_pred             --ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           79 --RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        79 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                        ..+|++|+|+|+++.+....+   ...+.    ..   +.|+++|+||+|+.........   ...+....+ +++++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~----~~---~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~  145 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL---TSQLF----EL---GKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP  145 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH---HHHHT----TS---CSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH---HHHHH----Hc---CCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence              789999999999986554433   22222    11   6799999999998754333333   333445555 89999


Q ss_pred             eeeccCCCHHHHHHHHHHH
Q 029929          157 TSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~  175 (185)
                      +||++|.|+++++++|.+.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999886

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=6e-27  Score=166.17  Aligned_cols=156  Identities=21%  Similarity=0.146  Sum_probs=116.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh-
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY-   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~-   78 (185)
                      ...++|+++|.+|||||||+++|++..+.....++.+.+.....+...  ...+.+|||||+..+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            346899999999999999999999887665555666555555555544  368899999998766542      24444 


Q ss_pred             -ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           79 -RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        79 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                       ..+|++++|+|+++.++..   .|...+...       +.|+++|+||+|+........   +...+...++ ++++++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~~---~~~~l~~~lg-~~vi~~  146 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMKI---DRYELQKHLG-IPVVFT  146 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCCB---CHHHHHHHHC-SCEEEC
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchHH---HHHHHHHHcC-CCEEEE
Confidence             5899999999999865432   344444321       679999999999865322222   3455666666 899999


Q ss_pred             eeccCCCHHHHHHHHHHHHh
Q 029929          158 SAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ||++|.|+++++++|.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=2.1e-27  Score=184.36  Aligned_cols=165  Identities=24%  Similarity=0.338  Sum_probs=120.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEE------EE--ECCcEEEEEEecCCChhhhcccccch
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKE------VQ--FEDRLFTLQIWDTAGQERFQSLGVAF   77 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~D~~g~~~~~~~~~~~   77 (185)
                      ...+||+++|.+|||||||++++++..+.....++.+.++....      +.  ..+..+.+.+||+||++.+......+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            45699999999999999999999999887777777776665442      11  12345789999999999999999999


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++|+|+|+++.   +....|+..+.....     +.|+++|+||+|+...  +....+.+...+...+ ++++++
T Consensus       119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~v  187 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHRI  187 (535)
T ss_dssp             HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEEC
T ss_pred             ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEEE
Confidence            9999999999999865   445677777776543     5799999999999865  4555677777777666 789999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ||++|.|+++++++|.+.+.....
T Consensus       188 SA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          188 SCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             CC-----CTTHHHHHHHHHTCTTS
T ss_pred             ecCcccCHHHHHHHHHHHHhcccc
Confidence            999999999999999999876543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=9.9e-28  Score=171.69  Aligned_cols=156  Identities=19%  Similarity=0.229  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc----------ccch
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF   77 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~   77 (185)
                      .++|+++|.+|||||||+|+|++........++.+.+.....+...+  ..+.+|||||+..+...          ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999876656667777777666666654  46788999997765521          2222


Q ss_pred             h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           78 Y--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      +  +.+|++++|+|+++.+....+   ...+...       ++|+++|+||+|+.........   ...+....+ ++++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~i  146 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYL---TLQLLEL-------GIPCIVALNMLDIAEKQNIRIE---IDALSARLG-CPVI  146 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH-------TCCEEEEEECHHHHHHTTEEEC---HHHHHHHHT-SCEE
T ss_pred             HhhcCCCEEEEEecCCChHHHHHH---HHHHHhc-------CCCEEEEEECccchhhhhHHHH---HHHHHHhcC-CCEE
Confidence            2  689999999999986554433   3333322       6799999999998754333333   344445555 8999


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhc
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ++||++|.|+++++++|.+.+...
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999998877644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.7e-27  Score=169.89  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=112.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc-
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-   79 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-   79 (185)
                      ..++|+++|.+|||||||+++|++........++.+.+.....  +.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            3589999999999999999999987655444555544433333  343 5678999999987664      33445554 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        80 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                       .+|++++|+|+++.+..   ..|...+.+       .+.|+++|+||+|+.......   .+...+....+ ++++++|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg-~~vi~~S  144 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG-VPVVATS  144 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEECB
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC-CCEEEEE
Confidence             69999999999975543   345454443       167999999999986432122   23455555566 8999999


Q ss_pred             eccCCCHHHHHHHHHHHHhh
Q 029929          159 AKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~  178 (185)
                      |++|.|+++++++|.+.+..
T Consensus       145 A~~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCTT
T ss_pred             ccCCCCHHHHHHHHHHHHhh
Confidence            99999999999999987643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.2e-27  Score=172.87  Aligned_cols=160  Identities=17%  Similarity=0.194  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---cccchhccCcE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC   83 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~   83 (185)
                      ||+++|..|+|||||++++.+...+.   ...+|.+.+...    ++ ..+.+++|||+|++++..   ....+++.+++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   245666655543    22 347899999999999864   35788999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----eeecHHHHHHHHHhc---CCCc
Q 029929           84 CVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----RVVSEKKAKAWCASK---GNIP  153 (185)
Q Consensus        84 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~---~~~~  153 (185)
                      +|+|||++++  +.......|+..+...     .+++|+++++||+|+.....     +++..++..+++...   ..++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~  150 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS  150 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence            9999999987  2222222233333222     23789999999999986532     334455555555531   2478


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          154 YFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |+++||++ .++.++|..|++.+.++.
T Consensus       151 f~eTSAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          151 FYLTSIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             EECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             EEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence            99999998 589999999998877654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.94  E-value=2.9e-26  Score=163.98  Aligned_cols=158  Identities=20%  Similarity=0.192  Sum_probs=118.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc------cccchh--c
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--R   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~   79 (185)
                      .++|+++|++|||||||+++|++........++.+.+.....+...+  ..+.+|||||+..+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            58999999999999999999999877666667777777666666655  4588999999876655      344444  6


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++|+|+++.+   ....+...+....      ..|+++|+||+|+.........   ...+....+ ++++++||
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~~~~Sa  147 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKKKGAKID---IKKMRKELG-VPVIPTNA  147 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHHHTCCCC---HHHHHHHHS-SCEEECBG
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCcccccHHH---HHHHHHHcC-CcEEEEEe
Confidence            899999999999753   2233444443321      2799999999998653222222   445555666 89999999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcC
Q 029929          160 KEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++|.|+.++++++.+.+....
T Consensus       148 ~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999886543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=1.8e-25  Score=161.71  Aligned_cols=166  Identities=16%  Similarity=0.107  Sum_probs=112.4

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hc
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ   71 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~   71 (185)
                      |+.. .+..+|+++|.+|+|||||+|+|++..+.. ...+.++.........  ....++.+|||||...        +.
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~   77 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMD   77 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHH
Confidence            4443 345689999999999999999999988753 3333333333222232  2346899999999665        44


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (185)
                      .....+++.+|++++|+|++++.+... ..++..+....     .+.|+++|+||+|+....  ....+.+..+   .+.
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~~  146 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPE  146 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STT
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cCc
Confidence            455677899999999999988644432 22233443321     267999999999997541  1012222222   344


Q ss_pred             CcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          152 IPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       152 ~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .+++++||++|.|+++++++|.+.+++..
T Consensus       147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~~~  175 (301)
T 1wf3_A          147 AEPRMLSALDERQVAELKADLLALMPEGP  175 (301)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHhcccCC
Confidence            67999999999999999999998876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.93  E-value=3e-25  Score=169.81  Aligned_cols=160  Identities=21%  Similarity=0.214  Sum_probs=113.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~   78 (185)
                      ...++|+++|+.++|||||+++|++..       ......++.+.+.....+.+++  ..+++|||||++.+...+..++
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            346899999999999999999999776       2223333444444333444443  6889999999999988888899


Q ss_pred             ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc---CCC
Q 029929           79 RGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---GNI  152 (185)
Q Consensus        79 ~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  152 (185)
                      ..+|++|+|+|+++   +.+.+.+.    .+. .      .++|+++++||+|+.+....+...+++..++...   ..+
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~-~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~  163 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILD-H------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS  163 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHH-H------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHH-H------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence            99999999999987   44444332    111 1      1678899999999986432333445566665544   247


Q ss_pred             cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          153 PYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +++++||++|.|+++++++|.+.+..
T Consensus       164 ~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          164 SIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHhhcC
Confidence            99999999999999999999998763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.93  E-value=8.2e-25  Score=164.43  Aligned_cols=169  Identities=16%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE-------EE---------EE---CCcEEEEEEecCC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK-------EV---------QF---EDRLFTLQIWDTA   65 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~~~D~~   65 (185)
                      +...++|+++|++|+|||||+++|++....... .....+....       .+         ..   ......+.+||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            456799999999999999999999975433210 0000000000       00         00   1123689999999


Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW  145 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  145 (185)
                      |++.+...+..++..+|++|+|+|+++..+......++..+....      ..|+++|+||+|+.+........+++.++
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999998765555555555443321      23899999999998643222333444444


Q ss_pred             HHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          146 CASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       146 ~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ....  ..++++++||++|.|+++++++|.+.++...
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            4332  2478999999999999999999998776543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=1.4e-25  Score=170.17  Aligned_cols=162  Identities=17%  Similarity=0.156  Sum_probs=112.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc-
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG-   74 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-   74 (185)
                      ..++|+++|.+|+|||||++++++.... ....++++.+.....+.+++.  .+.+|||||+.          .+.... 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4689999999999999999999988753 344455555655556666653  58899999973          333222 


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH----HHHHHhcC
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA----KAWCASKG  150 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~  150 (185)
                      ..+++.+|++++|+|++++.++... .|...+..       .+.|+++|+||+|+.+..  ....++.    ........
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~~  321 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD  321 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccCC
Confidence            2467889999999999998777664 45554432       267999999999998642  2222222    22222234


Q ss_pred             CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          151 NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .++++++||++|.|++++++.+.+.+....
T Consensus       322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          322 YAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            589999999999999999999998887544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=4.4e-25  Score=168.17  Aligned_cols=157  Identities=17%  Similarity=0.177  Sum_probs=97.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc--------cch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~   77 (185)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3589999999999999999999987532 34455566666556666655  578999999987655332        346


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++++|+|++++.+++.+..+.. +...+.     +.|+++|+||+|+......  .   ...+... +..+++++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l~-----~~piIvV~NK~Dl~~~~~~--~---~~~l~~~-~~~~~i~v  377 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAHP-----AAKFLTVANKLDRAANADA--L---IRAIADG-TGTEVIGI  377 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHCT-----TSEEEEEEECTTSCTTTHH--H---HHHHHHH-HTSCEEEC
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHH-HHHhcC-----CCCEEEEEECcCCCCccch--h---HHHHHhc-CCCceEEE
Confidence            789999999999999877754333222 222222     5799999999999865321  1   1223232 22689999


Q ss_pred             eeccCCCHHHHHHHHHHHHh
Q 029929          158 SAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ||++|.|+++++++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=1.9e-26  Score=159.95  Aligned_cols=149  Identities=14%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc-
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-   80 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-   80 (185)
                      +...++|+++|++|+|||||+++|.+..+..   ...++.+..+         ....+.+|||||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4567999999999999999999999987654   2333333222         34578899999999988888888877 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec----HHHHHHHHHhcCCC
Q 029929           81 ---ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS----EKKAKAWCASKGNI  152 (185)
Q Consensus        81 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~  152 (185)
                         +|++|+|+|++ +++++.....|+..+..........+.|+++|+||+|+.........    .+++..+....+ .
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence               89999999999 88888888888777765432111236799999999999875321111    333444444333 4


Q ss_pred             cEEEeeeccCC
Q 029929          153 PYFETSAKEGF  163 (185)
Q Consensus       153 ~~~~~s~~~~~  163 (185)
                      +++++||+++.
T Consensus       159 ~~~~~Sa~~~~  169 (218)
T 1nrj_B          159 SLNEVERKINE  169 (218)
T ss_dssp             HHHC-------
T ss_pred             ccccccccccc
Confidence            66667776654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.93  E-value=2.2e-24  Score=162.35  Aligned_cols=165  Identities=17%  Similarity=0.165  Sum_probs=108.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCccee--eeEEEEEEE-------------C--C----cEEEEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ   60 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~   60 (185)
                      +...++|+++|+.++|||||+++|++...   .....+..+.  .+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            34569999999999999999999985432   2233342232  332222211             1  1    136899


Q ss_pred             EecCCChhhhcccccchhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      +|||||++.+...+...+..+|++|+|+|+++.    .+.+.+..    + ....     ..|+++++||+|+.......
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~-~~l~-----~~~iivv~NK~Dl~~~~~~~  154 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----L-EILG-----IDKIIIVQNKIDLVDEKQAE  154 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----H-HHTT-----CCCEEEEEECTTSSCTTTTT
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----H-HHcC-----CCeEEEEEEccCCCCHHHHH
Confidence            999999999988888888899999999999953    34433321    1 1111     23799999999998754333


Q ss_pred             ecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ...+++.+++...  ..++++++||++|.|+++++++|.+.++..
T Consensus       155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            4456666666542  347999999999999999999999877643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=4e-25  Score=162.03  Aligned_cols=164  Identities=18%  Similarity=0.136  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccchh---ccC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA   81 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~---~~~   81 (185)
                      .+|+|+|.+|||||||+++|++........+.++.......+.+++. ..+.+|||||...    ...+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987644333444445555555555542 4789999999543    223334444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEe
Q 029929           82 DCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET  157 (185)
Q Consensus        82 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (185)
                      |++|+|+|+++   +++++.+..|..++..+...  ..++|+++|+||+|+...      .+....+...+.. .+++++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i  309 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI  309 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence            99999999998   78888888888887765321  136799999999999753      1344455555442 689999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ||+++.|+++++++|.+.+...+.
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhCcc
Confidence            999999999999999999986654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=1.2e-24  Score=165.89  Aligned_cols=164  Identities=17%  Similarity=0.157  Sum_probs=114.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhcccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG   74 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~   74 (185)
                      ...++|+++|.+|+|||||++++.+... .....++++.+.....+..++.  .+++|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3568999999999999999999997653 2334455555554555555553  788999999          45555443


Q ss_pred             c-chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----
Q 029929           75 V-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----  149 (185)
Q Consensus        75 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----  149 (185)
                      . .+++.+|++++|+|+++..+... ..+...+..       .++|+++|+||+|+...  +....+++.+.+...    
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~  340 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL  340 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence            3 36789999999999987543222 344444432       26799999999999865  334444444444432    


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +.++++++||++|.|++++++++.+.+.....
T Consensus       341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            35899999999999999999999998876543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=8.2e-24  Score=156.73  Aligned_cols=162  Identities=21%  Similarity=0.209  Sum_probs=116.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---------cccc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVA   76 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~   76 (185)
                      ...++|+++|.+|+|||||++++.+........+..+.......+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356899999999999999999999877443333444444444444333  35789999999643211         1123


Q ss_pred             hhccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           77 FYRGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ....+|++++|+|++++.  +++....|+..+.....     +.|+++|+||+|+....    ..+....++...+ +++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~-~~~  312 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADEE----NIKRLEKFVKEKG-LNP  312 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCHH----HHHHHHHHHHHTT-CCC
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCChH----HHHHHHHHHHhcC-CCe
Confidence            345699999999998876  66776778777766542     57999999999997541    1234444554444 799


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          155 FETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +++||++|+|+++++++|.+.+...
T Consensus       313 ~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          313 IKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.92  E-value=3.7e-24  Score=161.23  Aligned_cols=165  Identities=18%  Similarity=0.212  Sum_probs=113.9

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCccee--eeEEEEEEE-------------C--C----cEEEEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ   60 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~   60 (185)
                      +...++|+++|+.++|||||+++|++...   .....+..+.  .+....+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            35569999999999999999999985432   2233343333  222222211             0  1    136899


Q ss_pred             EecCCChhhhcccccchhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      +|||||+..+...+...+..+|++|+|+|+++.    .+.+.+..    +... .     ..|+++++||+|+.......
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~-~-----~~~iivviNK~Dl~~~~~~~  156 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII-G-----QKNIIIAQNKIELVDKEKAL  156 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH-T-----CCCEEEEEECGGGSCHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-C-----CCcEEEEEECccCCCHHHHH
Confidence            999999999988888888899999999999953    34443322    1111 1     23799999999998643222


Q ss_pred             ecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ...+++.+++...  ..++++++||++|.|+++++++|.+.++..
T Consensus       157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            3344555555432  347999999999999999999999877643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.92  E-value=9.7e-26  Score=169.23  Aligned_cols=159  Identities=22%  Similarity=0.234  Sum_probs=112.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-------ccc
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVA   76 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~   76 (185)
                      ....++|+|+|..|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+...       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            345799999999999999999999988763 3445555666666677766653 7899999998876554       234


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ++..+|++|+|+|++..+.   ...|+..+...       +.|+++|+||+|+......    +....+....+ +++++
T Consensus       110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~~  174 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVLL  174 (423)
T ss_dssp             HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCCC
T ss_pred             HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEEE
Confidence            7788999999999943332   24555555433       6799999999999875322    34444444444 79999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      +||++|.|+++++++|.+.++..
T Consensus       175 vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          175 VSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999998544

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=5e-24  Score=162.47  Aligned_cols=152  Identities=23%  Similarity=0.272  Sum_probs=113.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh-hhcc--------cccch
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF   77 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~   77 (185)
                      .++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||.. ....        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987643 44556666676666666664  568999999977 4432        22456


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++|+|+|++++.+++... ++..    +.     +.|+++|+||+|+...    ...+++..+..  ..++++++
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~--~~~~~i~i  384 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILER----IK-----NKRYLVVINKVDVVEK----INEEEIKNKLG--TDRHMVKI  384 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHH----HT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT--CSTTEEEE
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHH----hc-----CCCEEEEEECcccccc----cCHHHHHHHhc--CCCcEEEE
Confidence            78999999999999887766532 2222    21     5699999999999753    22344444322  23689999


Q ss_pred             eeccCCCHHHHHHHHHHHHh
Q 029929          158 SAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ||++|.|+++++++|.+.+.
T Consensus       385 SAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHTH
T ss_pred             ECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999765

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.91  E-value=1.6e-23  Score=163.09  Aligned_cols=162  Identities=18%  Similarity=0.208  Sum_probs=111.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------CccCcceeeeEEEEEEE---CCcEEEEEEecCCChh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE   68 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~   68 (185)
                      +..+|+++|+.++|||||+++|+.....  .             ....+.+.......+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4679999999999999999999863211  0             00111222211222222   4556899999999999


Q ss_pred             hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh
Q 029929           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS  148 (185)
Q Consensus        69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (185)
                      +|...+..+++.+|++|+|+|+++..+......|.....        .++|+++|+||+|+....    ..+...++...
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~----~~~v~~ei~~~  150 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD----PERVAEEIEDI  150 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence            999999999999999999999998766666655655432        167999999999998642    22223333343


Q ss_pred             cC--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       149 ~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++  ..+++++||++|.|+++++++|.+.++...
T Consensus       151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             hCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            33  235999999999999999999999887643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.91  E-value=1.3e-24  Score=155.75  Aligned_cols=165  Identities=15%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------cCcceeeeEEEEEEECCcEEEEEEecCCChhhh------
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------   70 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------   70 (185)
                      +...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+++|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            456799999999999999999998876654332        445555555555554555579999999996322      


Q ss_pred             -cccc-------cchh-------------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           71 -QSLG-------VAFY-------------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        71 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                       ....       ..++             ..+|+++++++.+.......-..++..+.    .    ++|+++|+||+|+
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~----~~pvi~V~nK~D~  156 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E----KVNIIPLIAKADT  156 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----T----TSCEEEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----c----cCCEEEEEeccCC
Confidence             1111       2222             23789999997765222122133334332    2    5799999999998


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ..........+.+.......+ ++++++|+.+++|+.+++++|.+.++.
T Consensus       157 ~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          157 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence            754333333344555555555 889999999999999999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=2.5e-23  Score=150.64  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=108.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChh---------hhcccccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVA   76 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~   76 (185)
                      +..+|+++|++|+|||||++++++..+.. ...+.++.......+..  ....+.+|||||+.         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            34689999999999999999999887532 22232332222222322  34688999999976         23444566


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.+|++++|+|+++. +  ....+.....   ..   .+.|+++++||+|+...  .....+.+..+....+...+++
T Consensus        85 ~l~~~D~vl~Vvd~~~~-~--~~~~~i~~~l---~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~  153 (301)
T 1ega_A           85 SIGDVELVIFVVEGTRW-T--PDDEMVLNKL---RE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVP  153 (301)
T ss_dssp             CCCCEEEEEEEEETTCC-C--HHHHHHHHHH---HS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEE
T ss_pred             HHhcCCEEEEEEeCCCC-C--HHHHHHHHHH---Hh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEE
Confidence            78899999999999762 2  2122222211   11   26799999999999762  2233344555544455347999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcC
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +||+++.|+++++++|.+.++...
T Consensus       154 iSA~~g~~v~~l~~~i~~~l~~~~  177 (301)
T 1ega_A          154 ISAETGLNVDTIAAIVRKHLPEAT  177 (301)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred             EECCCCCCHHHHHHHHHHhCCcCC
Confidence            999999999999999998776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.91  E-value=3.4e-23  Score=161.06  Aligned_cols=163  Identities=17%  Similarity=0.212  Sum_probs=113.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC--CC-------------CccCcceeee--EEEEEEE-CCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SN-------------QYKATIGADF--LTKEVQF-EDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~-------------~~~~~~~~~~--~~~~~~~-~~~~~~~~~~D~~g~   67 (185)
                      .+..+|+++|+.++|||||+++|+....  ..             ....+.+...  ....+.. ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            4568999999999999999999975311  10             0011111111  1122221 455689999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  147 (185)
                      .+|...+..+++.+|++|+|+|+++..+......|.....        .++|+++|+||+|+....    ..+...++..
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~----~~~v~~el~~  151 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD----VDRVKKQIEE  151 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC----HHHHHHHHHH
Confidence            9999988899999999999999999877776666655432        167999999999998642    1222333444


Q ss_pred             hcCC--CcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          148 SKGN--IPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       148 ~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ..+.  .+++++||++|.|+++++++|.+.++...
T Consensus       152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             hhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            3431  25899999999999999999999887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.91  E-value=1.7e-23  Score=158.62  Aligned_cols=156  Identities=18%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++++|||||+++|+....                               .....++.+.+.....+  ..
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~--~~   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF--ET   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE--ec
Confidence            4568999999999999999999954321                               11112334444444444  34


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~  127 (185)
                      ....+++|||||+.++...+..+++.+|++|+|+|+++...   ++   .....+....    .   .++| +++++||+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~----~---~~v~~iIvviNK~  165 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK----T---AGVKHLIVLINKM  165 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH----H---cCCCeEEEEeecC
Confidence            45689999999999999999999999999999999997532   11   1111111111    1   1556 89999999


Q ss_pred             CCCCCCc----eeecHHHHHHHHHhcC-----CCcEEEeeeccCCCHHHHHH
Q 029929          128 DVDGGNS----RVVSEKKAKAWCASKG-----NIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       128 Dl~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~~~~  170 (185)
                      |+...+.    .+...+++..++...+     .++++++||++|.|+.++.+
T Consensus       166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            9964321    2223344444544433     36899999999999999654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=4e-23  Score=156.85  Aligned_cols=154  Identities=21%  Similarity=0.300  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccchh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~   78 (185)
                      .+|+++|.+|+|||||+|+|++.... ....++++.+.....+...+.  .+.+|||||...         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 344566666666666666654  678999999653         234456678


Q ss_pred             ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH-HHHHHhcCCCcEE
Q 029929           79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA-KAWCASKGNIPYF  155 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~  155 (185)
                      +.+|++++|+|+.+..+...  +..|+...          ++|+++|+||+|+...    . .... ..+. ..+..+++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~  143 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI  143 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence            99999999999987544432  22333221          6799999999997531    1 1222 3333 34533789


Q ss_pred             EeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          156 ETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ++||++|.|+.+++++|.+.+++..
T Consensus       144 ~iSA~~g~gv~~L~~~i~~~l~~~~  168 (439)
T 1mky_A          144 PVSAEHNINLDTMLETIIKKLEEKG  168 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEeccCCCCHHHHHHHHHHhccccc
Confidence            9999999999999999999998543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=8.3e-23  Score=151.10  Aligned_cols=165  Identities=19%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh---------hhcccccchhcc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAFYRG   80 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~   80 (185)
                      .|+++|++|||||||++++++........++.+.+.....+.+++  ..+.+|||+|.-         .+... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            399999999999999999998876544455566666667777776  467899999952         12222 234688


Q ss_pred             CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEE
Q 029929           81 ADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFE  156 (185)
Q Consensus        81 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~  156 (185)
                      +|++++|+|++++.  ..+....+...+....    ..+.|+++|+||+|+.+.. .......+..+....  ...++++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~----~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIG----VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT----CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhC----cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEE
Confidence            99999999999876  4555444444443322    1267999999999997542 111112232233333  2247899


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      +||+++.|+++++++|.+.+......
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             EECCCCcCHHHHHHHHHHHhcccCCC
Confidence            99999999999999999988766543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=7.4e-24  Score=160.88  Aligned_cols=155  Identities=19%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc--------cch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~   77 (185)
                      ..++|+++|++|+|||||+|+|++.... ....++++.+.....+.+++  ..+.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3589999999999999999999986543 33445555555444555554  567899999976544322        335


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      +..+|++++|+|++++.+... ..++..+    .     ..|+++|+||+|+.......    ....+   ....+++++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~i  363 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVHT  363 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEEE
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEEE
Confidence            788999999999998766554 3444433    2     35999999999997642211    11111   124689999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ||++|.|+++++++|.+.+....
T Consensus       364 SAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          364 AAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=8.5e-26  Score=173.57  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=115.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ++++|+++|++++|||||+++|.+..+.....++.+.++....+...+ ...++||||||++.|..++..+++.+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            457899999999999999999987765544455555544433333322 2368899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH---Hhc-CCCcEEEeeeccC
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC---ASK-GNIPYFETSAKEG  162 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~  162 (185)
                      |+|+++.........+ ..+.    .   .++|+++++||+|+........ ...+....   ... +.++++++||++|
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~----~---~~vPiIVViNKiDl~~~~~~~v-~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK----D---AHVPIVLAINKCDKAEADPEKV-KKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH----T---TTCCEEECCBSGGGTTTSCCSS-SSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEECCCCccHHHHHHH-HHHH----H---cCCcEEEEEecccccccchHHH-HHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            9999986555443332 2221    1   1679999999999976432222 22222211   111 2358999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 029929          163 FNVEAAFECIAKNALK  178 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~  178 (185)
                      .|+++++++|...+..
T Consensus       153 ~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          153 ENMMALAEATIALAEM  168 (537)
T ss_dssp             CSSHHHHHHHHHHHTT
T ss_pred             CCchhHHHHHHHhhhc
Confidence            9999999999988753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=142.39  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=105.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC--cceeeeEEEEEEECCcEEEEEEecCCCh-----------hhhcc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQS   72 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~   72 (185)
                      ...++|+|+|.+|+|||||++++++........+  +.+...........+  ..+.+|||||.           ..+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4569999999999999999999999887655444  344444444555544  57889999993           23444


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceee----cHHHHHHHHHh
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCAS  148 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~  148 (185)
                      ....+++.+|++|+|+|++.....+  ..++..+...+...  ...|+++|+||+|+........    ..+.++.+...
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4445567789999999987633321  22223332211110  0348999999999876422211    12356667676


Q ss_pred             cCCCcEEEeeeccC-----CCHHHHHHHHHHHHhhc
Q 029929          149 KGNIPYFETSAKEG-----FNVEAAFECIAKNALKN  179 (185)
Q Consensus       149 ~~~~~~~~~s~~~~-----~~i~~~~~~i~~~~~~~  179 (185)
                      .+ ..++.+++..+     .++.+++..+.+.+..+
T Consensus       181 ~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          181 FG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            66 56777766643     68999999998888664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.90  E-value=1.1e-23  Score=158.46  Aligned_cols=165  Identities=16%  Similarity=0.115  Sum_probs=113.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--c-----cCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR--------KFSNQ--Y-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ...++|+++|++++|||||+++|++.        .+...  .     ....+.+.......+......+.+|||||+.++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45689999999999999999999873        11110  0     001222222233344444568899999999999


Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHh
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCAS  148 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~  148 (185)
                      ...+..+++.+|++|+|+|+++...... ..++..+...       ++| +++++||+|+..... .+...+++..++..
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~  160 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ  160 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999988654333 3444433321       567 889999999985211 11223455566655


Q ss_pred             cC----CCcEEEeeeccCCC------------------HHHHHHHHHHHHhh
Q 029929          149 KG----NIPYFETSAKEGFN------------------VEAAFECIAKNALK  178 (185)
Q Consensus       149 ~~----~~~~~~~s~~~~~~------------------i~~~~~~i~~~~~~  178 (185)
                      .+    .++++++||++|.|                  +.++++.|...++.
T Consensus       161 ~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          161 YEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             TTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             hcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            54    37899999999987                  78888888877763

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.90  E-value=2.1e-23  Score=156.48  Aligned_cols=164  Identities=16%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   72 (185)
                      ..++|+++|+.++|||||+++|++..       +...       .....+.+.......+......+.+|||||+.++..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998631       1100       000112222223334444556889999999999988


Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhcC
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASKG  150 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~  150 (185)
                      .+..+++.+|++|+|+|+++.........+ ..+..       .++| +++++||+|+..... .+...+++.+++...+
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  153 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG  153 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999985443332222 22221       1567 689999999985211 1223345666666554


Q ss_pred             ----CCcEEEeeeccCCC----------HHHHHHHHHHHHhh
Q 029929          151 ----NIPYFETSAKEGFN----------VEAAFECIAKNALK  178 (185)
Q Consensus       151 ----~~~~~~~s~~~~~~----------i~~~~~~i~~~~~~  178 (185)
                          .++++++||++|.|          +.++++.|.+.++.
T Consensus       154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                36999999999764          88999999887764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=1.1e-22  Score=144.73  Aligned_cols=166  Identities=17%  Similarity=0.242  Sum_probs=106.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCc-ceeeeEEEEEEECCcEEEEEEecCCChhhhcccc---------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG---------   74 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------   74 (185)
                      ...++|+|+|.+|+|||||++++++... .....++ .+...........+  ..+.+|||||+..+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999998773 3333343 34444444444443  578999999976543222         


Q ss_pred             --cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCceeecH-------HHHHH
Q 029929           75 --VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN-KTDVDGGNSRVVSE-------KKAKA  144 (185)
Q Consensus        75 --~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~~~~~~~~-------~~~~~  144 (185)
                        ..+++.+|++|+|+|++......  ..++..+...+...  ...|.++++| |+|+....   ...       ..+..
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~  170 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSK  170 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCcc---HHHHHHhcchHHHHH
Confidence              22568899999999998622221  22223333322211  1346777776 99998431   111       22344


Q ss_pred             HHHhcCCC--cE--EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          145 WCASKGNI--PY--FETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       145 ~~~~~~~~--~~--~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +....+..  .+  +++||+++.|+++++++|.+.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            44444311  12  78999999999999999999988654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.90  E-value=3.9e-23  Score=161.05  Aligned_cols=162  Identities=22%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~   69 (185)
                      .+.++|+++|++++|||||+++|.+..+........+.+.........                .....+++|||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            356899999999999999999998765432211111111111111110                1112589999999999


Q ss_pred             hcccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----------
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----------  136 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----------  136 (185)
                      |..++..+++.+|++|+|+|+++   +.+++.+..    +..       .++|+++++||+|+.......          
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence            99999989999999999999998   566554432    111       167999999999997531100          


Q ss_pred             ----ecHH-------HHHHHHHhc--------------CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          137 ----VSEK-------KAKAWCASK--------------GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       137 ----~~~~-------~~~~~~~~~--------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                          ...+       +........              ..++++++||++|.|+.+++++|...++.
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                0000       111111111              22489999999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=1.2e-22  Score=154.17  Aligned_cols=162  Identities=22%  Similarity=0.188  Sum_probs=106.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------------   73 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------   73 (185)
                      ..++|+++|++|||||||++++++.... ....++++.+.....+.+++.  .+.+|||+|.......            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999987642 333455555555556666664  5789999996433221            


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH-HHH---hc
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCA---SK  149 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~---~~  149 (185)
                      ...+++.+|++++|+|+.+..+.... .+...+..       .+.|+++|+||+|+....  ....++... +..   ..
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  326 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI  326 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCch--hhHHHHHHHHHHHHhccC
Confidence            12356789999999999876555432 22222221       167999999999997642  222222221 112   23


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ..++++++||++|.|++++++.+.+.+....
T Consensus       327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          327 DYSPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            4579999999999999999999998876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=2.4e-23  Score=157.97  Aligned_cols=154  Identities=17%  Similarity=0.204  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccchhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYR   79 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~   79 (185)
                      ++|+++|.+|+|||||+|+|++.... ....++.+.+......  ...+..+.+|||||+.        .+......+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987654 2233344334333333  3334578999999975        45666677889


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++|+|+|+.++.+...  .++..+.   ..   .++|+++|+||+|+.......      .++. ..+..+++++||
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l---~~---~~~pvilv~NK~D~~~~~~~~------~~~~-~lg~~~~~~iSA  146 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEMRANI------YDFY-SLGFGEPYPISG  146 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHH---TT---CCSCEEEEEECCCC-----CC------CSSG-GGSSCCCEECBT
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHH---HH---cCCCEEEEEECccCccchhhH------HHHH-HcCCCCeEEEeC
Confidence            9999999999998666543  2222222   22   267999999999987532111      1111 233237899999


Q ss_pred             ccCCCHHHHHHHHHHHHhhc
Q 029929          160 KEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ++|.|+.++++++.+.+++.
T Consensus       147 ~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGGC
T ss_pred             cCCCChHHHHHHHHHhcCcc
Confidence            99999999999999988754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-23  Score=143.19  Aligned_cols=118  Identities=15%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc--
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG--   80 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--   80 (185)
                      ...++|+++|++|+|||||++++.+..+..   ...++.+.++         ....+.+|||||+..+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            456899999999999999999999887543   2222222111         34578899999998887777777765  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           81 --ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        81 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                        +|++++|+|++ +++++..+..|+..+..........+.|+++|+||+|+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence              89999999999 88999888888777765432111236799999999999865

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.89  E-value=3.3e-23  Score=159.66  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------------CccCcceeeeEEEEEEECCcEEEEEEec
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------------QYKATIGADFLTKEVQFEDRLFTLQIWD   63 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D   63 (185)
                      .+..+|+++|++|+|||||+++|+......                      ...++.+.......+..  ..+.+++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEE
Confidence            356899999999999999999996221100                      00112222222333333  347899999


Q ss_pred             CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |||+.++......+++.+|++|+|+|+++..+.....-| ..+..    .   ++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~---~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----R---HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----T---TCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----c---CCCEEEEEeCCCCccc
Confidence            999999999999999999999999999986666554333 32221    1   6799999999999754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=2.6e-23  Score=152.93  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  125 (185)
                      .+.+.+||++|++.++..|..+++.++++|+|+|+++          ..+++....|+..+....   ...++|+++++|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~piiLv~N  268 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDTSIILFLN  268 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCCcEEEEEE
Confidence            5789999999999999999999999999999999998          456777777777765431   223689999999


Q ss_pred             CCCCCCCC-------------ceeecHHHHHHHHHh----------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          126 KTDVDGGN-------------SRVVSEKKAKAWCAS----------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       126 K~Dl~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      |+|+....             ......+++..++..          ...+.+++|||+++.|++++|+++.+.+...+.
T Consensus       269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            99985310             012456677776652          234788999999999999999999999987653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.89  E-value=1.1e-24  Score=165.04  Aligned_cols=160  Identities=16%  Similarity=0.218  Sum_probs=105.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------ccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ-----------------------------YKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|+.++|||||+++|+..  .+...                             ..++.+.+..  ...+..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEec
Confidence            35689999999999999999999864  22110                             0122222222  223344


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN  133 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~  133 (185)
                      ....+++|||||+.++...+..+++.+|++|+|+|+++ .+++....|..+..++.......+. |+++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            45689999999999999988899999999999999998 6666543332222222111101133 689999999998632


Q ss_pred             c----eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929          134 S----RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       134 ~----~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~  168 (185)
                      .    .+...+++..++...+    .++++++||++|.|+.++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            1    1233455666666554    378999999999999754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.89  E-value=3.4e-23  Score=158.85  Aligned_cols=158  Identities=19%  Similarity=0.201  Sum_probs=98.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|.+|+|||||+++|+.....                               ....++.+.+...  ..+..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEec
Confidence            34699999999999999999999755111                               1111222333323  33344


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL--NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ..+.+.+|||||++.+...+..+++.+|++|+|+|+++.++...+  ..+.......+...+  ..|+++|+||+|+.+.
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence            557899999999999999999999999999999999986433221  011111111111111  2369999999999863


Q ss_pred             Cc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929          133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (185)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (185)
                      ..  .+...+++..+....+    .++++++||++|.|+.+
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            21  1112333444443332    36899999999999874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.89  E-value=5.1e-23  Score=152.62  Aligned_cols=149  Identities=14%  Similarity=0.038  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      +|+++|++++|||||+++|+        ....+.+.....  +......+++|||||+.++.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        222222332333  33344579999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCceeecHHHHHHHHHhc--CCCcEEE--eeecc--
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN-KTDVDGGNSRVVSEKKAKAWCASK--GNIPYFE--TSAKE--  161 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~s~~~--  161 (185)
                       +. ........++..+...       ++|. ++++| |+|+ +....+...+++.+++...  ..+++++  +||++  
T Consensus        93 -~~-g~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~  162 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN  162 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred             -CC-CCcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence             54 2333334444433221       5677 89999 9999 4311111224555555443  2478999  99999  


Q ss_pred             -CCCHHHHHHHHHHHHhh
Q 029929          162 -GFNVEAAFECIAKNALK  178 (185)
Q Consensus       162 -~~~i~~~~~~i~~~~~~  178 (185)
                       +.|++++++.|.+.++.
T Consensus       163 ~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          163 PFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccc
Confidence             99999999999988764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.88  E-value=2.7e-24  Score=164.02  Aligned_cols=157  Identities=22%  Similarity=0.236  Sum_probs=107.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .++++|+++|+.++|||||+++|.+..+.....++.+.+.....+..+  ...++||||||+..|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            356899999999999999999998765443333333333322222222  347889999999999999999999999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH--HHHHHHHhc-CCCcEEEeee
Q 029929           86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASK-GNIPYFETSA  159 (185)
Q Consensus        86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~s~  159 (185)
                      +|+|+++   +.+.+.+.    ....       .++|+++++||+|+...+......+  ....+.... +.++++++||
T Consensus        80 LVVda~~g~~~qT~e~l~----~~~~-------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA  148 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAIQ----HAKA-------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA  148 (501)
T ss_dssp             EEEETTTBSCTTTHHHHH----HHHH-------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred             EEeecccCccHHHHHHHH----HHHh-------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence            9999988   44443332    1111       1679999999999975322111100  000000111 2368999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKN  175 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~  175 (185)
                      ++|.|+++++++|...
T Consensus       149 ktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          149 KAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTCTTHHHHTTTT
T ss_pred             eeccCcchhhhhhhhh
Confidence            9999999999998753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=1.1e-22  Score=147.63  Aligned_cols=124  Identities=11%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG  124 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  124 (185)
                      ..+.+.+||++|++.++..+..+++.++++|+|+|++          +.++++....|+..+...   ....++|+++++
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~~~~iiL~~  241 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQNSSVILFL  241 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGTTCEEEEEE
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccCCceEEEEE
Confidence            4578999999999999999999999999999999665          566777766666666532   223378999999


Q ss_pred             eCCCCCCC--------------CceeecHHHHHHHHHh---------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          125 NKTDVDGG--------------NSRVVSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       125 nK~Dl~~~--------------~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ||+|+...              .......+++.+++..         ...+.++++||+++.|++.+|..+.+.+.+++-
T Consensus       242 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          242 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             ECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            99998532              0113456666666431         123567899999999999999999999987764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=1.2e-22  Score=154.87  Aligned_cols=158  Identities=17%  Similarity=0.147  Sum_probs=101.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC--------hhhhcccccch
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVAF   77 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~   77 (185)
                      ....+|+++|.+|+|||||+|+|++..... ...+.+.+..............+.+|||||        +..+......+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            345799999999999999999999876541 122233333333334444456889999999        66777778888


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++|+|+|+.+..+...  .++..+.   ..   .++|+++|+||+|+.....      ....+. ..+...++++
T Consensus       100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l---~~---~~~pvilV~NK~D~~~~~~------~~~e~~-~lg~~~~~~i  164 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEMRA------NIYDFY-SLGFGEPYPI  164 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHHH--HHHHHHH---TT---CCSCEEEEEECC---------------CCSG-GGSSSSEEEC
T ss_pred             HhhCCEEEEEEeCCCCCChHH--HHHHHHH---HH---cCCCEEEEEECccchhhhh------hHHHHH-HcCCCceEEe
Confidence            899999999999886433322  2222222   22   2679999999999874311      111111 2333467899


Q ss_pred             eeccCCCHHHHHHHHHHHHhhc
Q 029929          158 SAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      ||++|.|+.++++++.+.+...
T Consensus       165 SA~~g~gv~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          165 SGTHGLGLGDLLDAVAEHFKNI  186 (456)
T ss_dssp             CTTTCTTHHHHHHHHHTTGGGS
T ss_pred             ecccccchHHHHHHHHhhcccc
Confidence            9999999999999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.5e-22  Score=153.51  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=102.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC--CC----------ccCcc-------------------eeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQ----------YKATI-------------------GADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~~----------~~~~~-------------------~~~~~~~~~~~~~   54 (185)
                      ...++|+++|+.++|||||+++|+.....  ..          ..++.                   +.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            34589999999999999999999865411  00          00110                   1111112222333


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN  133 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~  133 (185)
                      ....+++|||||+..+...+..++..+|++|+|+|+++...... ..++..+.. .      +. |+++|+||+|+.+..
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-~------~~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-L------GIKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-T------TCCEEEEEEECTTTTTSC
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCeEEEEEEcCcCCccc
Confidence            45688999999999998888889999999999999998543332 223332221 1      33 589999999998632


Q ss_pred             ce--eecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929          134 SR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       134 ~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~  168 (185)
                      ..  ....+++..++...+    .++++++||++|.|+.++
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            11  123345556655544    268999999999999873

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.87  E-value=3.8e-22  Score=137.44  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=99.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hcccccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA   76 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~   76 (185)
                      ...+|+++|++|||||||++++++..+.....++.+.......+.+.+   .+.+|||||...          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            347899999999999999999988764333344444433333333333   467899999632          2222223


Q ss_pred             hh---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929           77 FY---RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (185)
Q Consensus        77 ~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  150 (185)
                      ++   ..++++++++|+.++.+...  +..|+..          .+.|+++++||+|+.....++.....+..++.... 
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            33   46899999999988655432  2222221          16789999999998764322222345555555443 


Q ss_pred             CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          151 NIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      .+.++++|++++.|+++++++|.+.+.+.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            35788999999999999999999887654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=7.2e-23  Score=151.56  Aligned_cols=164  Identities=16%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-Cc--------cCcceeeeEEEEEEECCcEEEEEEecCCCh-------hh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~   69 (185)
                      ...++|+|+|++|+|||||+++|++..... ..        .++.+.......+...+....+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999987654332 11        133333333333344455678999999997       44


Q ss_pred             hccccc-------chhcc-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           70 FQSLGV-------AFYRG-------------ADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      +..+..       .+++.             +|+++|+++.. ..++..+. .++..+    .    .++|+|+|+||+|
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D  185 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD  185 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence            444443       44433             34566666542 22333332 233322    2    2679999999999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +..........+.+..++...+ ++++++||+++.+ ++.+.++.+.+...-
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            9864222222245555555555 8999999999998 888888887776543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=5.1e-22  Score=146.03  Aligned_cols=123  Identities=13%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG  124 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  124 (185)
                      ..+.+.+|||+|++.++..+..+++.++++|+|+|++          +.++++....|+..+....   ...++|+++|+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence            5688999999999999999999999999999999998          7788988888887775432   12378999999


Q ss_pred             eCCCCCCCCc-------------------eeecHHHHHHHHHh---------------cCCCcEEEeeeccCCCHHHHHH
Q 029929          125 NKTDVDGGNS-------------------RVVSEKKAKAWCAS---------------KGNIPYFETSAKEGFNVEAAFE  170 (185)
Q Consensus       125 nK~Dl~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~  170 (185)
                      ||+|+.....                   .....++...++..               ...+.+++|||+++.|++++|+
T Consensus       258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~  337 (354)
T 2xtz_A          258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK  337 (354)
T ss_dssp             ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence            9999843200                   00123455555332               1123468999999999999999


Q ss_pred             HHHHHHhhcC
Q 029929          171 CIAKNALKNE  180 (185)
Q Consensus       171 ~i~~~~~~~~  180 (185)
                      ++.+.+..++
T Consensus       338 ~v~~~I~~~~  347 (354)
T 2xtz_A          338 LVDETLRRRN  347 (354)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.87  E-value=6.5e-22  Score=161.34  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=110.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      ...++|+++|+.++|||||+++|++..       +..       ......+.+.....+.+......+++|||||+.++.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            456899999999999999999998631       000       001122222222233344455688999999999999


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhc
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASK  149 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~  149 (185)
                      ..+..++..+|++|+|+|+++...... ..++..+...       ++| +++++||+|+.+... .+...+++..+....
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~  445 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY  445 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence            888889999999999999998533322 2333333221       567 789999999985311 112334566666655


Q ss_pred             C----CCcEEEeeeccC--------CCHHHHHHHHHHHHhh
Q 029929          150 G----NIPYFETSAKEG--------FNVEAAFECIAKNALK  178 (185)
Q Consensus       150 ~----~~~~~~~s~~~~--------~~i~~~~~~i~~~~~~  178 (185)
                      +    .++++++||++|        .|+.++++.|.+.++.
T Consensus       446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            4    378999999999        4688999988887653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.8e-22  Score=154.87  Aligned_cols=157  Identities=20%  Similarity=0.208  Sum_probs=101.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-------------------------------cCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-------------------------------KATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++|+|||||+++|+........                               .++++.+.....+.  .
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~--~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--T  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE--C
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe--c
Confidence            34689999999999999999999866322111                               12233333333333  3


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVD  130 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~  130 (185)
                      ....+++|||||+..+...+..+++.+|++|+|+|+++...   +.........+.. ....   ++ |+++|+||+|+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~-~~~l---gi~~iIVVvNKiDl~  318 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL-ASSL---GIHNLIIAMNKMDNV  318 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHH-HHTT---TCCEEEEEEECTTTT
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHH-HHHc---CCCeEEEEEeccccc
Confidence            44688999999999999999999999999999999986420   0000011111111 1111   33 599999999998


Q ss_pred             CCCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929          131 GGNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~  168 (185)
                      ....  .....+.+..+....+    .++++++||++|.|+.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            6321  1122334444444433    368999999999999865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.86  E-value=4.8e-23  Score=160.93  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++++|||||+++|+....                               .....++++.+....  .+..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEEe
Confidence            4568999999999999999999964210                               011122333333322  2333


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEE
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFLIQASPSDPENFP-FVVL  123 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv  123 (185)
                      ....++||||||+..+...+..++..+|++|+|+|+++.          .+.+.+    ..+. ..      ++| +|+|
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~-~l------gip~iIvv  321 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLR-AL------GISEIVVS  321 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHH-HS------SCCCEEEE
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHH-Hc------CCCeEEEE
Confidence            456889999999999999999999999999999999853          222221    1111 11      455 8999


Q ss_pred             EeCCCCCCCCc--eeecHHHHHHHH-HhcC----CCcEEEeeeccCCCHH--------------HHHHHHHHHHh
Q 029929          124 GNKTDVDGGNS--RVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVE--------------AAFECIAKNAL  177 (185)
Q Consensus       124 ~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~--------------~~~~~i~~~~~  177 (185)
                      +||+|+.....  .....+++..+. ...+    .++++++||++|.|+.              .+++.|...++
T Consensus       322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            99999976321  122233444444 3333    2479999999999998              67777766554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=9.6e-22  Score=149.75  Aligned_cols=154  Identities=18%  Similarity=0.242  Sum_probs=102.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------------------------ccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQ-----------------------------YKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|++++|||||+++|+...  +...                             ...+.+.+.....  +..
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EEC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Eec
Confidence            456999999999999999999998641  1100                             0122222222222  334


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~  127 (185)
                      ....+++|||||+..+...+..++..+|++|+|+|+++...   |+   .....+.... .   .   ++| +++++||+
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~---~---~v~~iivviNK~  155 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T---L---GVRQLIVAVNKM  155 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H---T---TCCEEEEEEECG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H---c---CCCeEEEEEEcc
Confidence            45689999999999999988899999999999999997531   11   1112222111 1   1   455 89999999


Q ss_pred             CCCCCCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929          128 DVDGGNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       128 Dl~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~  168 (185)
                      |+.+...  .+...+++..++...+    .++++++||++|.|+.++
T Consensus       156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9984211  1223445555655554    278999999999998643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.86  E-value=1.5e-22  Score=154.51  Aligned_cols=158  Identities=17%  Similarity=0.201  Sum_probs=89.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------------------------CccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-----------------------------QYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|+.++|||||+++|+...  +..                             ....+.+.+.....+..  
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~--  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence            346899999999999999999997421  100                             00112222222222333  


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD  130 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~  130 (185)
                      ....+++|||||+..|...+..++..+|++|+|+|+++..   +|+....+...+... ..   .++| +++++||+|+.
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDEP  194 (467)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECccCC
Confidence            3468899999999999999999999999999999999852   222111111111111 01   1566 99999999996


Q ss_pred             CCC----ceeecHHHHHHHHHhc-C-----CCcEEEeeeccCCCHHHHH
Q 029929          131 GGN----SRVVSEKKAKAWCASK-G-----NIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus       131 ~~~----~~~~~~~~~~~~~~~~-~-----~~~~~~~s~~~~~~i~~~~  169 (185)
                      ...    ..+...+++..++... +     .++++++||++|.|+.+++
T Consensus       195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            421    1122334455555544 2     3679999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.85  E-value=1.7e-21  Score=143.75  Aligned_cols=122  Identities=12%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  125 (185)
                      .+.+.+|||+|++.++..+..+++.++++|+|+|+++          ..++.....|+..+....   ...++|+++++|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~~piILv~N  276 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSNVSIILFLN  276 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCCCCEEEEEE
Confidence            4789999999999999999999999999999999999          678888888877776431   123689999999


Q ss_pred             CCCCCCCC--------------ceeecHHHHHHHHH----h------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          126 KTDVDGGN--------------SRVVSEKKAKAWCA----S------KGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       126 K~Dl~~~~--------------~~~~~~~~~~~~~~----~------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |+|+....              ......+++..++.    .      ...+.++++||+++.|++++|+++.+.+...+
T Consensus       277 K~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          277 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            99985310              01134566665541    1      12367899999999999999999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=5e-22  Score=143.88  Aligned_cols=161  Identities=15%  Similarity=0.198  Sum_probs=99.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc------cCc----------------------ceee--------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KAT----------------------IGAD--------------   44 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~------~~~----------------------~~~~--------------   44 (185)
                      ..++|+|+|.+|+|||||+++|++..+.+..      .|+                      .+.+              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998764211      121                      0000              


Q ss_pred             -------eEEEEEEEC-CcEEEEEEecCCChh-------------hhcccccchhccCcEEE-EEEECCChhhHHHHHHH
Q 029929           45 -------FLTKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNVMKSFDNLNNW  102 (185)
Q Consensus        45 -------~~~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~  102 (185)
                             .....+.+. .....+++|||||..             .+......+++.++.++ +|+|+++..+......+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                   000000000 012578999999953             34455667778888776 79999875433332233


Q ss_pred             HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       103 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ...+    ..   .+.|+++|+||+|+.....  ...+.+.......  +..+++++||++|.|+++++++|.+..
T Consensus       185 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          185 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHH----CT---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHh----CC---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3333    22   2679999999999986422  1222221100011  224688999999999999999988743

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=1.6e-21  Score=142.11  Aligned_cols=122  Identities=14%  Similarity=0.158  Sum_probs=92.4

Q ss_pred             CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      ...+.+.+||++|++.++..+..+++.++++|+|+|++          +.+++.....|+..+.....   ..++|++++
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv  234 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIF  234 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEE
Confidence            34578899999999999999999999999999999998          67788887777777664322   237899999


Q ss_pred             EeCCCCCCCC-------------ceeecHHHHHHHHH-hc-------------------------CCCcEEEeeeccCCC
Q 029929          124 GNKTDVDGGN-------------SRVVSEKKAKAWCA-SK-------------------------GNIPYFETSAKEGFN  164 (185)
Q Consensus       124 ~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~s~~~~~~  164 (185)
                      +||+|+....             ......+++.+++. .+                         ..+.++++||+++.+
T Consensus       235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n  314 (340)
T 4fid_A          235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN  314 (340)
T ss_dssp             EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred             EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence            9999985310             00012344433332 12                         236688999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029929          165 VEAAFECIAKNALK  178 (185)
Q Consensus       165 i~~~~~~i~~~~~~  178 (185)
                      ++.+|..+.+.+..
T Consensus       315 v~~vF~~v~~~Il~  328 (340)
T 4fid_A          315 IKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.84  E-value=2.9e-20  Score=147.71  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=82.9

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCC--------C----------CccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS--------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   65 (185)
                      ...+..+|+++|+.|+|||||+++|+.....        .          ......+.......+..  ..+.+++||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTP   85 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTP   85 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECc
Confidence            3456799999999999999999999842110        0          00111222222222222  34789999999


Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |+.++...+..+++.+|++|+|+|+++..+......|.. +...       ++|+++|+||+|+...
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence            999998889999999999999999998777666544433 2221       6799999999998754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.84  E-value=4.4e-20  Score=138.30  Aligned_cols=163  Identities=18%  Similarity=0.126  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccc---hhccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~d   82 (185)
                      .|+++|++|||||||++++++........+..+.......+...+ ...+++||+||...    ...+...   ....++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            578999999999999999988753322233333344444454443 24678999999632    1112222   235699


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      .+++++|++ ...+..+..+..++..+....  ...|.++++||+|+...    ...+.+.......+ .+++.+||+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~g  309 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALTG  309 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCCc
Confidence            999999998 566677776666665542110  14589999999998752    23344444444444 78999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCC
Q 029929          163 FNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~~  181 (185)
                      +|+++++++|.+.+.....
T Consensus       310 ~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          310 AGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             TTHHHHHHHHHHHHHTSCC
T ss_pred             cCHHHHHHHHHHHHHhccc
Confidence            9999999999999986654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.83  E-value=2.8e-20  Score=143.55  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=79.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   65 (185)
                      ...++|+++|++|+|||||+++|+.......                    ..+..+.+.......+....+.+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            3568999999999999999999986421100                    00011111111122233345789999999


Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |+..+......+++.+|++|+|+|+++......     ..+...+...   ++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~---~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLR---DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTT---TCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHc---CCCEEEEEcCcCCccc
Confidence            999998888889999999999999987543221     2222222222   6799999999999754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.83  E-value=1.1e-19  Score=144.43  Aligned_cols=166  Identities=14%  Similarity=0.179  Sum_probs=106.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeE--------------------------------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFL--------------------------------------   46 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~--------------------------------------   46 (185)
                      ...++|+|+|.+|+|||||+|+|++....+ ...+++.....                                      
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            356899999999999999999999887543 33333310000                                      


Q ss_pred             ---------------EEEEEECCcE--EEEEEecCCChhh---hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHH
Q 029929           47 ---------------TKEVQFEDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF  106 (185)
Q Consensus        47 ---------------~~~~~~~~~~--~~~~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  106 (185)
                                     ...+..+...  ..+++|||||...   .......+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                           0001111100  2588999999654   3345567788999999999999887776654443332


Q ss_pred             HhhcCCCCCCCCcEEEEEeCCCCCCCC---cee--e---cHHHHHH----HHHhc--------CCCcEEEeeec------
Q 029929          107 LIQASPSDPENFPFVVLGNKTDVDGGN---SRV--V---SEKKAKA----WCASK--------GNIPYFETSAK------  160 (185)
Q Consensus       107 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~--~---~~~~~~~----~~~~~--------~~~~~~~~s~~------  160 (185)
                          ...   +.|+++|+||+|+....   ...  .   ....+..    .....        ...+++++||+      
T Consensus       227 ----~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          227 ----KGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             ----TTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             ----Hhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence                211   56899999999986532   000  0   0011211    11111        12479999999      


Q ss_pred             --------cCCCHHHHHHHHHHHHhh
Q 029929          161 --------EGFNVEAAFECIAKNALK  178 (185)
Q Consensus       161 --------~~~~i~~~~~~i~~~~~~  178 (185)
                              ++.|+.++++.|.+.+..
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHH
Confidence                    999999999999887754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=1.1e-19  Score=135.14  Aligned_cols=121  Identities=12%  Similarity=0.078  Sum_probs=92.8

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  125 (185)
                      .+.+.+|||+|++.++..+..+++.++++|+|+|+++          .++++....|+..+....   ...++|+++|+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~~piiLvgN  292 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRTISVILFLN  292 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSSCCEEEEEE
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCCCeEEEEEE
Confidence            3789999999999999999999999999999999999          889999888888776432   223789999999


Q ss_pred             CCCCCCCCc---e------------------------e-ecHHHHHHHH-----Hhc-------CCCcEEEeeeccCCCH
Q 029929          126 KTDVDGGNS---R------------------------V-VSEKKAKAWC-----ASK-------GNIPYFETSAKEGFNV  165 (185)
Q Consensus       126 K~Dl~~~~~---~------------------------~-~~~~~~~~~~-----~~~-------~~~~~~~~s~~~~~~i  165 (185)
                      |+|+.....   .                        . ...+++..++     ...       ..+.++++||+++.|+
T Consensus       293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV  372 (402)
T 1azs_C          293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  372 (402)
T ss_dssp             CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred             ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence            999843200   0                        0 0134444442     211       2356789999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      +++|.++.+.+...
T Consensus       373 ~~vF~~v~~~I~~~  386 (402)
T 1azs_C          373 RRVFNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3.1e-19  Score=126.94  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=83.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc-----
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-----   79 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-----   79 (185)
                      ...++|+++|.+|+|||||++++++.... ....+..+.......+..++  ..+++|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35699999999999999999999988753 22233333344444444443  58899999998777655444443     


Q ss_pred             ----cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           80 ----GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        80 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                          .+|++++|++++.......-..++..+...+...  ...|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence                7899999999876542222245666665543321  12389999999999643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.82  E-value=2.5e-19  Score=141.92  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------cceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ....+|+++|+.|+|||||+++|...........                ..+.++......+....+.+++|||||+.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            3457999999999999999999985432210000                011222222233333457899999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +......+++.+|++++|+|+.+...... ..++..+...       ++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~-------~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL-------GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc-------cCCEEEEecCCchh
Confidence            98888999999999999999887544332 2333333321       67999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.81  E-value=3.2e-20  Score=135.38  Aligned_cols=164  Identities=12%  Similarity=0.201  Sum_probs=96.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee----EEE----------------------------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF----LTK----------------------------------   48 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~----~~~----------------------------------   48 (185)
                      ..++|+|+|.+|+|||||+|+|++..+.+......+...    ...                                  
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            457999999999999999999999876322111000000    000                                  


Q ss_pred             -------------------EEE-ECCcEEEEEEecCCChhh-------------hcccccchhccCcEEEEEEECCChhh
Q 029929           49 -------------------EVQ-FEDRLFTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNVMKS   95 (185)
Q Consensus        49 -------------------~~~-~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~   95 (185)
                                         .+. .......+.+|||||...             +......++..+|++++|+|..+...
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                               000 111224689999999643             44556677889999999999744221


Q ss_pred             H-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE---eeecc---CCCHHHH
Q 029929           96 F-DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE---TSAKE---GFNVEAA  168 (185)
Q Consensus        96 ~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~---~~~i~~~  168 (185)
                      . .....+...+    ..   .+.|+++|+||+|+.....  ...+.+....... ...+++   +|+.+   +.|+.++
T Consensus       183 ~~~~~~~i~~~~----~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l  252 (315)
T 1jwy_B          183 ANSDALQLAKEV----DP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRES  252 (315)
T ss_dssp             TTCSHHHHHHHH----CS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHH
T ss_pred             hhhHHHHHHHHh----CC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHH
Confidence            1 1111222222    22   2679999999999986532  1222222100111 134555   45555   8899999


Q ss_pred             HHHHHHHHhhcC
Q 029929          169 FECIAKNALKNE  180 (185)
Q Consensus       169 ~~~i~~~~~~~~  180 (185)
                      ++.+.+.++...
T Consensus       253 ~~~~~~~~~~~~  264 (315)
T 1jwy_B          253 LKSEILYFKNHP  264 (315)
T ss_dssp             HHHHHHHHHTCT
T ss_pred             HHHHHHHHhCCC
Confidence            999998887643

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.81  E-value=1.3e-18  Score=138.53  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC--CC-----------Cc-----cCcceeeeEEEEEEEC-----CcEEEEEEe
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SN-----------QY-----KATIGADFLTKEVQFE-----DRLFTLQIW   62 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~   62 (185)
                      .+..+|+++|+.|+|||||+++|+....  ..           ..     ....+.......+.+.     +..+.+++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            4568999999999999999999975321  10           00     1111222222222222     234789999


Q ss_pred             cCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ||||+.+|...+..+++.+|++|+|+|+++.........| .....       .++|+++++||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-------~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-------YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-------cCCCEEEEEeCCCcccc
Confidence            9999999988889999999999999999986554443333 22211       16799999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.80  E-value=3e-20  Score=134.43  Aligned_cols=165  Identities=16%  Similarity=0.256  Sum_probs=85.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC-CCCCCc--------cCcceeeeEEEEEEECCcEEEEEEecCCCh-------hh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR-KFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~   69 (185)
                      ...++|+|+|+.|+|||||++++++. .++...        .++.............+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998875 332221        111111111112222344568899999997       33


Q ss_pred             hccccc-------chhc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           70 FQSLGV-------AFYR-------------GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        70 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      +.....       .+++             .+++++++.+.+.. +++...  .. +.....    .+.|+++|+||+|+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~-~l~~l~----~~~~iilV~~K~Dl  167 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VA-FMKAIH----NKVNIVPVIAKADT  167 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HH-HHHHHT----TTSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HH-HHHHHH----hcCCEEEEEEeCCC
Confidence            333322       2322             23456666664321 222221  12 222222    15689999999999


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ..........+++.+++...+ ++++++||+++ |+++++.++.+.+....
T Consensus       168 ~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          168 LTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            764223334567777777776 89999999999 99999999999887544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.80  E-value=5.3e-19  Score=140.54  Aligned_cols=117  Identities=21%  Similarity=0.212  Sum_probs=81.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------Cc-----cCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSN-----------QY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      .+..+|+++|++|+|||||+++|+..  .+..           .+     .+..+.......+.+.  .+.+++|||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence            45689999999999999999999852  2110           00     1111222222223333  468999999999


Q ss_pred             hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      .++......+++.+|++|+|+|+++..+......|. .+...       ++|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~-------~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY-------GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT-------TCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEECCCcccc
Confidence            999888889999999999999999876665544443 33221       6799999999999764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=9.1e-20  Score=135.24  Aligned_cols=155  Identities=11%  Similarity=0.159  Sum_probs=96.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE---------------------------------------
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK---------------------------------------   48 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------   48 (185)
                      ..+|+|+|.+|||||||++++++..+.+......+......                                       
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            45999999999999999999999876433222221110000                                       


Q ss_pred             -------------EEEE-CCcEEEEEEecCCChhhh-------------cccccchhccCcEEEEEEECCChhhHHHHHH
Q 029929           49 -------------EVQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNVMKSFDNLNN  101 (185)
Q Consensus        49 -------------~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  101 (185)
                                   ...+ ......+++|||||...+             ......+++.+|++|+|+|..+.+...  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         0000 111235789999996654             455677889999999999876543222  22


Q ss_pred             HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929          102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC  171 (185)
Q Consensus       102 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  171 (185)
                      ++..+.. ...   .+.|+++|+||+|+....  ....+.+.......+ .+++++++..+.++++.+..
T Consensus       192 ~~~l~~~-~~~---~~~~~i~V~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 AIKISRE-VDP---SGDRTFGVLTKIDLMDKG--TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHH-SCT---TCTTEEEEEECGGGCCTT--CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHH-hcc---cCCCEEEEEeCCccCCCc--ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCH
Confidence            2232222 222   267999999999998652  222333332222233 78899999988877765544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.79  E-value=4.3e-19  Score=132.62  Aligned_cols=85  Identities=16%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEE---------------------ECC-cEEEEEEecCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG   66 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g   66 (185)
                      ++|+++|.+|+|||||+|++++........|+++.+.......                     +.+ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998774333344333333222211                     122 246899999999


Q ss_pred             hhh----hcccc---cchhccCcEEEEEEECCCh
Q 029929           67 QER----FQSLG---VAFYRGADCCVLVYDVNVM   93 (185)
Q Consensus        67 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~   93 (185)
                      ...    ...+.   ...++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            643    22222   2456899999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=1.5e-18  Score=123.96  Aligned_cols=121  Identities=19%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccc-------h-
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-------F-   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~-   77 (185)
                      ..++|+++|.+|+|||||+++|++..+.. ...+..+.......  +......+.+|||||...+......       + 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS--RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE--EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE--EeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            46999999999999999999999877532 22222222222222  3334568999999997655432221       1 


Q ss_pred             -hccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           78 -YRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        78 -~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                       ...+|++++|+|++... +... ..|+..+...+...  ...|+++|+||+|+...
T Consensus       116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred             hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence             24699999999987532 3222 35566555443210  12589999999999754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.78  E-value=5.4e-18  Score=131.38  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------------CCCccCcceeeeEEEEEEECCcEEEEEEec
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWD   63 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   63 (185)
                      .+.-||+|+|+.++|||||..+|+....                      ......+++.......+.+  .++.++++|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEe
Confidence            3567999999999999999999852211                      1112222222222333333  457899999


Q ss_pred             CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |||+.+|.......++-+|++|+|+|+...-......-| ....+.       ++|.++++||+|....
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~-------~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR-------ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT-------TCCEEEEEECTTSCCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh-------CCceEEEEecccchhc
Confidence            999999999999999999999999999985444433333 323221       7899999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.77  E-value=2.4e-19  Score=132.68  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      .+.+.+|||||...   ........+|++++|+|....+....+.            ......|.++|+||+|+......
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~~~~  235 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHHKEA  235 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcChhHH
Confidence            36788999999432   2223458899999999987654332211            11114589999999998643112


Q ss_pred             eecHHHHHHHHHhcC------CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          136 VVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .....++........      ..+++++||++|.|+++++++|.+.+..
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222223333222121      3689999999999999999999988764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=130.62  Aligned_cols=162  Identities=16%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-------cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----   72 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----   72 (185)
                      ...++|+|+|+.|||||||++.|++.... ...       .++.............+....+++||++|......     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34589999999999999999999987653 211       11111111111112223345789999999654311     


Q ss_pred             --------------------cccchhccCc--EEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           73 --------------------LGVAFYRGAD--CCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        73 --------------------~~~~~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                                          ....++..++  +++|+.+.+. .+++.. ..|+..+.        .++|+|+|+||+|+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl  179 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADT  179 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence                                1122344444  4555555431 122222 23444442        16799999999999


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ..........+.+...+...+ ++++++|++++.++.+++..+...++
T Consensus       180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred             ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            764222222356666766665 89999999999999998888877655

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.76  E-value=4.9e-20  Score=136.31  Aligned_cols=159  Identities=15%  Similarity=0.183  Sum_probs=91.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE----------------------------------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL----------------------------------------   46 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   46 (185)
                      ..++|+|+|.+|+|||||+++|++..+.+......+....                                        
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999998764221111100000                                        


Q ss_pred             ---------EEEEEEC-CcEEEEEEecCCChh-------------hhcccccchhccCc-EEEEEEECCChhhHHHHHHH
Q 029929           47 ---------TKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNW  102 (185)
Q Consensus        47 ---------~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~  102 (185)
                               ...+.+. .....+++|||||..             .+..+...++..++ ++++|.|++..........+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                     0001111 113578999999953             23445556665555 55556676542221111122


Q ss_pred             HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH--HHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW--CASKGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       103 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      ...+    ..   .+.|+++|+||+|+......  ....+...  ....+..+++++||+++.|++++++++.+
T Consensus       190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEV----DP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH----CT---TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHh----Cc---CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2222    22   26799999999999864321  11111100  00012236788999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.76  E-value=9.9e-19  Score=121.27  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=93.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceee--------------eEEEEEEE----------------CCcE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD--------------FLTKEVQF----------------EDRL   56 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   56 (185)
                      ...+|+++|.+|+|||||+++|...............+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45799999999999999999998653211000000000              00111111                1123


Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      +.+.+|||+|+......   +....+.+++|+|+.+....  ...+....          +.|.++|+||+|+...  ..
T Consensus       109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~--~~  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEA--VG  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHH--HT
T ss_pred             CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcc--hh
Confidence            46788899884111111   11246889999998764321  11111111          4589999999998642  11


Q ss_pred             ecHHHHHHHHHhc-CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929          137 VSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       137 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      ...+.....+... ..++++++||++|.|+++++++|.+.+.....
T Consensus       172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~  217 (221)
T 2wsm_A          172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD  217 (221)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence            2344444444443 24789999999999999999999998876543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=5.3e-17  Score=119.35  Aligned_cols=85  Identities=25%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhhhc-
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ-   71 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~-   71 (185)
                      .++|+++|.+|+|||||+|++++........|+++.+.....+.+.+.               ...+.+||+||..... 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999987754443444443333333444442               1478999999976542 


Q ss_pred             ---ccc---cchhccCcEEEEEEECCC
Q 029929           72 ---SLG---VAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        72 ---~~~---~~~~~~~d~~i~v~d~~~   92 (185)
                         .+.   ...++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               222   234689999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.72  E-value=7.9e-19  Score=129.42  Aligned_cols=107  Identities=12%  Similarity=0.014  Sum_probs=62.4

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ++.+.++||+|....   .......+|++++|+|++.++....+.   ..+         ...|.++|+||+|+......
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i---------l~~~~ivVlNK~Dl~~~~~~  230 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI---------IEMADLVAVTKSDGDLIVPA  230 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH---------HhcCCEEEEeeecCCCchhH
Confidence            356789999995321   123457899999999998653222111   111         14478999999998642110


Q ss_pred             eecHHHHHHHHHh------cCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          136 VVSEKKAKAWCAS------KGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       136 ~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ......+......      .+..+++++||++|.|+++++++|.+.+.
T Consensus       231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            0111111111111      11357899999999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=4.6e-18  Score=123.06  Aligned_cols=134  Identities=19%  Similarity=0.132  Sum_probs=102.7

Q ss_pred             HHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-hHHHHH
Q 029929           23 SLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLN  100 (185)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~  100 (185)
                      +|+.+++...+. ..+.||.+..+. ..  +.... .+.+||+  ++.+..++..+++.+|++|+|+|+++++ +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577777777777 778888885443 22  22222 6889999  8889999999999999999999999987 788888


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCCHHHHHHHHH
Q 029929          101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVEAAFECIA  173 (185)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~i~  173 (185)
                      .|+..+..       .++|+++|+||+|+.+.  +.  .++...++..... ++++++||++|.|+++++.++.
T Consensus       106 ~~l~~~~~-------~~~piilv~NK~DL~~~--~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK-------NELETVMVINKMDLYDE--DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH-------TTCEEEEEECCGGGCCH--HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH-------CCCCEEEEEeHHHcCCc--hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            88886643       16799999999999753  22  1344555544432 6899999999999999998765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.70  E-value=4.5e-17  Score=131.90  Aligned_cols=117  Identities=21%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CccC--cceeeeEEEEEE------------ECCc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKA--TIGADFLTKEVQ------------FEDR   55 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~   55 (185)
                      ....+|+|+|+.|+|||||+++|+......                ...+  |.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998642100                0111  222222222232            2344


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      .+.+++|||||+.+|...+..+++.+|++|+|+|+.+..++.....|.....        .++|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcc
Confidence            7899999999999999999999999999999999999877776544443221        167999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.70  E-value=5.5e-18  Score=124.69  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ++.+.++||||.......   ....+|++++|+|++..+....+..   ..         .+.|.++|+||+|+.+....
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~  212 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNV  212 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHH
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHH
Confidence            457899999995543322   3578999999999975433211110   00         03488999999999753111


Q ss_pred             eecHHHHHHHHHhcC------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          136 VVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ....+++.......+      ..+++++||++|.|+++++++|.+.+.
T Consensus       213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111122333222222      357899999999999999999998765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.69  E-value=7.8e-16  Score=122.92  Aligned_cols=119  Identities=17%  Similarity=0.135  Sum_probs=79.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC--------C----------CCCccCcceeeeEEEEEEEC-----CcEEEEEEe
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--------F----------SNQYKATIGADFLTKEVQFE-----DRLFTLQIW   62 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~   62 (185)
                      .+..||+|+|+.++|||||..+|+...        .          .......++..-....+.+.     ...+.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            456799999999999999999985211        0          01112222222222333332     236899999


Q ss_pred             cCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |||||.+|.......++-+|++|+|+|+...-......-| ++..+.       ++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~-------~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY-------GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH-------TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc-------CCCeEEEEccccccCc
Confidence            9999999999999999999999999999874443332223 322222       7799999999998643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.69  E-value=4.3e-18  Score=134.30  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--------CC-----cc---CcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS--------NQ-----YK---ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   71 (185)
                      ..||+|+|+.++|||||..+|+.....        ..     +.   .-.+.+.......+...++.++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            468999999999999999998632110        00     00   001223333333444456788999999999999


Q ss_pred             ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH---------
Q 029929           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA---------  142 (185)
Q Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~---------  142 (185)
                      ......++-+|++|+|+|+...-.... ...+....+.       ++|.++++||+|....+.... .+++         
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~-------~lp~i~~INKmDr~~a~~~~~-~~~i~~~l~~~~~  152 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM-------GIPTIFFINKIDQNGIDLSTV-YQDIKEKLSAEIV  152 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH-------TCSCEECCEECCSSSCCSHHH-HHHHHHTTCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc-------CCCeEEEEeccccccCCHHHH-HHHHHHHhCCCcc
Confidence            999999999999999999987433332 2222333322       679999999999865431110 0000         


Q ss_pred             ---------------------------------------------------HHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929          143 ---------------------------------------------------KAWCASKGNIPYFETSAKEGFNVEAAFEC  171 (185)
Q Consensus       143 ---------------------------------------------------~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  171 (185)
                                                                         ..........|++..||+++.|++.+++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~  232 (638)
T 3j25_A          153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV  232 (638)
T ss_dssp             CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred             ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence                                                               00011122368889999999999999999


Q ss_pred             HHHHHhhc
Q 029929          172 IAKNALKN  179 (185)
Q Consensus       172 i~~~~~~~  179 (185)
                      +...++..
T Consensus       233 i~~~~p~p  240 (638)
T 3j25_A          233 ITNKFYSS  240 (638)
T ss_dssp             HHHSCCCS
T ss_pred             hhccccCc
Confidence            99877654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.68  E-value=9.7e-17  Score=111.58  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE------------EEEEEEC-Cc------------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL------------TKEVQFE-DR------------------   55 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   55 (185)
                      ..++|+++|.+|+|||||+++++...+.....++...++.            .....++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999876544333333332221            1111111 10                  


Q ss_pred             -EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929           56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (185)
Q Consensus        56 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  134 (185)
                       ...+.++|++|.-....   .+-...+..+.++|.........  .....+          ..|.++|+||+|+...  
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~iiv~NK~Dl~~~--  179 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGIM----------KTADLIVINKIDLADA--  179 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhHh----------hcCCEEEEeccccCch--
Confidence             11344556655211000   01122445566777532111100  001111          4588999999998642  


Q ss_pred             eeecHHHHHHHHHhc-CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          135 RVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      .....+.....+... ..++++++||++|.|+++++++|.+.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            223455555555543 34789999999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.68  E-value=1.9e-16  Score=116.96  Aligned_cols=84  Identities=23%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-------------------cEEEEEEecCCChhh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER   69 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~   69 (185)
                      ++|+++|.+|+|||||++++++........+..+.........+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998653322233333322222233322                   234789999999765


Q ss_pred             hc-------ccccchhccCcEEEEEEECCC
Q 029929           70 FQ-------SLGVAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        70 ~~-------~~~~~~~~~~d~~i~v~d~~~   92 (185)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            32       122335689999999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.68  E-value=3.8e-17  Score=129.73  Aligned_cols=159  Identities=15%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccee------------------------------------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGA------------------------------------------   43 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~------------------------------------------   43 (185)
                      ..++|+|+|.+++|||||+|+|++..+.+ ....++..                                          
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999987632 21111100                                          


Q ss_pred             --------eeEEEEEEECCcEEEEEEecCCChhh-------------hcccccchh-ccCcEEEEEEECCChhhHHHHHH
Q 029929           44 --------DFLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNVMKSFDNLNN  101 (185)
Q Consensus        44 --------~~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~  101 (185)
                              +.....+...+ ...++++||||...             .......++ ..+|++++|+|++..........
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                    00111111111 22578999999332             222333444 57899999999987433222222


Q ss_pred             HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH-HH-HhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929          102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WC-ASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (185)
Q Consensus       102 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~  175 (185)
                      +...+    ..   .+.|+++|+||+|+.......  ...... .. ...+..+++++||++|.|++++++.+.+.
T Consensus       209 ll~~L----~~---~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEV----DP---QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHH----CT---TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH----Hh---cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33333    22   267999999999998653221  111110 00 01123467889999999999999999873

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.67  E-value=5.9e-17  Score=125.75  Aligned_cols=120  Identities=19%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEE---------------------------------
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE---------------------------------   49 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~---------------------------------   49 (185)
                      ...++|+|+|.+|+|||||+|+|++..+.   ....++++.......                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998763   333333321111000                                 


Q ss_pred             ---EEECCc-EEEEEEecCCChhh-----------hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929           50 ---VQFEDR-LFTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD  114 (185)
Q Consensus        50 ---~~~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  114 (185)
                         ...... ...+++|||||...           +......++..+|++|+|+|+++....+....++..+.    .. 
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~-  217 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GH-  217 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TC-
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hc-
Confidence               000000 02578999999654           33455567789999999999987544444444544432    21 


Q ss_pred             CCCCcEEEEEeCCCCCCC
Q 029929          115 PENFPFVVLGNKTDVDGG  132 (185)
Q Consensus       115 ~~~~p~iiv~nK~Dl~~~  132 (185)
                        +.|+++|+||+|+...
T Consensus       218 --~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          218 --EDKIRVVLNKADMVET  233 (550)
T ss_dssp             --GGGEEEEEECGGGSCH
T ss_pred             --CCCEEEEEECCCccCH
Confidence              5689999999999863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.65  E-value=6.5e-16  Score=109.70  Aligned_cols=119  Identities=14%  Similarity=-0.046  Sum_probs=69.2

Q ss_pred             EEEEEecCCChhhhccccc------chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +.+.+|||||.........      ..+.. +++++++|+.....................   ..+.|+++|+||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccc
Confidence            5789999999765433211      23456 889999988643222222111111100000   0156999999999987


Q ss_pred             CCCceeecHHH------HH-H-----------------HHHhcC-CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          131 GGNSRVVSEKK------AK-A-----------------WCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       131 ~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                      .........+.      .. .                 ++...+ ..+++++||+++.|+++++++|.+.+...
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            53110000110      00 0                 012222 25899999999999999999999887654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.6e-15  Score=108.82  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=84.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccccchh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFY   78 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~   78 (185)
                      ....+|+++|.||+|||||+|+|++........|+++.+.....+.+.+  .+++++||||.....       ......+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            3446899999999999999999999887767778888888888888776  467889999942211       1223345


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +.+|++++|+|+++|....  .....++.....  ...+.|.++++||.|..
T Consensus       148 ~~ad~il~vvD~~~p~~~~--~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHK--QIIEKELEGVGI--RLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHH--HHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred             HhcCccccccccCccHHHH--HHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence            7899999999999864322  222233322211  11255889999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.56  E-value=4.4e-14  Score=103.67  Aligned_cols=105  Identities=14%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  135 (185)
                      ++.+.++||+|.....   ......+|++++++|+...+....+...   +.         ..+.++++||+|+...  .
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~  209 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--E  209 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--H
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--h
Confidence            4578899999954321   1234689999999998754322111110   11         2356788899997642  1


Q ss_pred             eecHHHHHHHHHh---cC------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          136 VVSEKKAKAWCAS---KG------NIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       136 ~~~~~~~~~~~~~---~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      .........+...   ..      ..+++.+||+++.|++++++.|.+...
T Consensus       210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          210 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            1111122222221   11      357899999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=101.43  Aligned_cols=112  Identities=10%  Similarity=-0.025  Sum_probs=73.6

Q ss_pred             CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCceeecHHH
Q 029929           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNKT-DVDGGNSRVVSEKK  141 (185)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~-Dl~~~~~~~~~~~~  141 (185)
                      .+||...+.+|..|+..+|++|||+|.++.+..+ ...-+..+..++.... ..+.|++|++||. |+...    ....+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A----ms~~E  183 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----MPCFY  183 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----CCHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----CCHHH
Confidence            3479999999999999999999999999976544 3333333344443332 3578999999995 77543    33334


Q ss_pred             HHHHHHh---cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          142 AKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       142 ~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +.+...-   ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            3332211   23588999999999999999999998886655

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.48  E-value=4.5e-14  Score=104.84  Aligned_cols=87  Identities=21%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhhhc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ   71 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~   71 (185)
                      ..++|+++|.+|+|||||++++++........|+++.++....+.+.+.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4579999999999999999999988765555666666665555555442               2358999999966543


Q ss_pred             c-------cccchhccCcEEEEEEECCCh
Q 029929           72 S-------LGVAFYRGADCCVLVYDVNVM   93 (185)
Q Consensus        72 ~-------~~~~~~~~~d~~i~v~d~~~~   93 (185)
                      .       .+..+++.+|++++|+|+.+.
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            3       345667899999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.47  E-value=1.8e-12  Score=96.48  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh-
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER-   69 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~-   69 (185)
                      ...+++++|++|+|||||+|+|++... .....|+++.++....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            347899999999999999999999876 5556676666666666666542               13678999999432 


Q ss_pred             ------hcccccchhccCcEEEEEEECCC
Q 029929           70 ------FQSLGVAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        70 ------~~~~~~~~~~~~d~~i~v~d~~~   92 (185)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234445688999999999863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.45  E-value=3.2e-13  Score=97.72  Aligned_cols=97  Identities=16%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             hhhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec-HHHHHH
Q 029929           67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-EKKAKA  144 (185)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~  144 (185)
                      ++.+..+...+++++|++++|+|+++++ ++..+..|+..+..       .++|+++|+||+|+.+.  .+.. .+....
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~--~~v~~~~~~~~  136 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE--EEKKELERWIS  136 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence            6667777778899999999999999986 88878888876543       26799999999999753  1111 344555


Q ss_pred             HHHhcCCCcEEEeeeccCCCHHHHHHHHH
Q 029929          145 WCASKGNIPYFETSAKEGFNVEAAFECIA  173 (185)
Q Consensus       145 ~~~~~~~~~~~~~s~~~~~~i~~~~~~i~  173 (185)
                      ++...+ ++++++||++|.|+++++..+.
T Consensus       137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence            555555 7999999999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.41  E-value=3e-14  Score=100.59  Aligned_cols=112  Identities=10%  Similarity=-0.030  Sum_probs=75.1

Q ss_pred             CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeC-CCCCCCCceeecHHH
Q 029929           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNK-TDVDGGNSRVVSEKK  141 (185)
Q Consensus        64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK-~Dl~~~~~~~~~~~~  141 (185)
                      .+||...+..|..|+..+|++|||+|+++.+.++ ...-+.++..+..... ..+.|++|++|| .|+...    ....+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A----ms~~E  268 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----MPCFY  268 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB----CCHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC----CCHHH
Confidence            4678999999999999999999999999977544 2222222222222111 137899999996 588643    33333


Q ss_pred             HHHHHHh---cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          142 AKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       142 ~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +.+...-   ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus       269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            3332211   13578999999999999999999999886654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=87.49  Aligned_cols=138  Identities=14%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------cCcceeeeEEEEEEECC--cEEEEEEecCCChhhhc------
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFED--RLFTLQIWDTAGQERFQ------   71 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~------   71 (185)
                      .|+++++|+.|||||||++.+++...+..-        .+... ......+....  ....++++|++|-....      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCC-SCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            489999999999999999999875432110        00000 00111111122  22367899999821100      


Q ss_pred             ------------ccc----------cchhccCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           72 ------------SLG----------VAFYRGADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        72 ------------~~~----------~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                                  ...          ...+..++++++++|.. .+-.... ...+..+..        .+++++|++|+|
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------~~~vI~Vi~K~D  151 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------VVNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------TSEEEEEETTGG
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------cCcEEEEEeccc
Confidence                        000          01123468899999965 3222222 222333321        258999999999


Q ss_pred             CCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929          129 VDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      .....+.......+.......+ +++++
T Consensus       152 ~lt~~e~~~~k~~i~~~l~~~~-i~i~~  178 (270)
T 3sop_A          152 TMTLEEKSEFKQRVRKELEVNG-IEFYP  178 (270)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTT-CCCSS
T ss_pred             cCCHHHHHHHHHHHHHHHHHcC-ccccC
Confidence            8865433333444444444444 44443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.23  E-value=2.3e-11  Score=91.18  Aligned_cols=144  Identities=14%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----cCcceeeeEEEEEEECCcEEEEEEecCCChhhh------------
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------   70 (185)
                      ..++++|+|+.|||||||++.+++..+....    .+..............+....++++|++|-...            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3467999999999999999999987543111    111111111111121222347889999883211            


Q ss_pred             --cccc----cc---------hhcc--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           71 --QSLG----VA---------FYRG--ADC-CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        71 --~~~~----~~---------~~~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                        ...+    ..         ....  +|+ ++++.|....-+...     ..+.+.+.    .+.|+|+|+||+|....
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~----~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD----SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh----hCCCEEEEEcchhccch
Confidence              0000    11         1112  344 445666654332222     12222222    26799999999998764


Q ss_pred             CceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929          133 NSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      .+.......+....... +++++.+|..
T Consensus       192 ~E~~~l~~~I~~~L~~~-gi~I~~is~~  218 (427)
T 2qag_B          192 SELTKFKIKITSELVSN-GVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHHHHBTT-BCCCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHc-CCcEEecCCC
Confidence            33333333333322223 3677777753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.22  E-value=2e-12  Score=95.95  Aligned_cols=140  Identities=17%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC------CCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------cccc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGV   75 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~   75 (185)
                      .+|+++|.+|+|||||+|+|++.      .......++++..  ...+.+...   +.++||||-....       ....
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999976      2222333333333  333433432   6789999933211       1111


Q ss_pred             chh---ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           76 AFY---RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        76 ~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      ..+   +..|.++++++.........+..     .   ......+.|+++++||+|..+.   .........+....+ .
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l---~~l~~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g-~  305 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----L---DYIKGGRRSFVCYMANELTVHR---TKLEKADSLYANQLG-E  305 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-----E---EEEESSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-T
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE-----E---EEccCCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-C
Confidence            122   56899999999853211111100     1   1111226799999999998864   233333334444454 4


Q ss_pred             cEEEeeeccCCCH
Q 029929          153 PYFETSAKEGFNV  165 (185)
Q Consensus       153 ~~~~~s~~~~~~i  165 (185)
                      .+.+.++....++
T Consensus       306 ~l~p~~~~~~~~~  318 (369)
T 3ec1_A          306 LLSPPSKRYAAEF  318 (369)
T ss_dssp             TBCSSCGGGTTTC
T ss_pred             ccCCCCchhhhhc
Confidence            5555555554443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.17  E-value=1.2e-10  Score=89.25  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH------hCCCC----CCccCcc-----------eeeeEEEEEE-------------E
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYV------NRKFS----NQYKATI-----------GADFLTKEVQ-------------F   52 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~   52 (185)
                      .+..|+++|.+||||||++++|.      +.+..    +...+..           +..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999997      33211    0001100           0111110000             0


Q ss_pred             CCcEEEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe
Q 029929           53 EDRLFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN  125 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n  125 (185)
                      ....+.+.++||||.....    ......  ...+|.+++|+|+.......   .....+..        ..|+ .+|+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVlN  248 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIVT  248 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEEE
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEEe
Confidence            0034578899999954221    111111  22789999999998743221   12222222        1364 89999


Q ss_pred             CCCCCCCCceeecHHHHHHHHHhcC-----------------CCcEEEeeeccCCC-HHHHHHHHHHH
Q 029929          126 KTDVDGGNSRVVSEKKAKAWCASKG-----------------NIPYFETSAKEGFN-VEAAFECIAKN  175 (185)
Q Consensus       126 K~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~~~~~-i~~~~~~i~~~  175 (185)
                      |.|.......      ........+                 ..+.+.+|+..|.| +.++++++.+.
T Consensus       249 K~D~~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9998743211      111111222                 12234578889999 99999998766

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.16  E-value=3e-10  Score=85.08  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=87.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeee--EEEEEEECCcEEEEEEecCCChhhhcccccc-----hhc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR   79 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~   79 (185)
                      ...++++|++|||||||+|.+.+...+.. .....+...  ....... .....++++|++|..........     .+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            35799999999999999999998542211 000001000  0111111 11125788999984322111111     123


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC---------CCCceeecHHHHHHHHH---
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD---------GGNSRVVSEKKAKAWCA---  147 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~---------~~~~~~~~~~~~~~~~~---  147 (185)
                      ..+..++ ++......-.  ..+...+...       +.|+++|.||.|+.         +...+....+.++.+..   
T Consensus       148 ~~~~~~~-lS~G~~~kqr--v~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKND--IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             GCSEEEE-EESSCCCHHH--HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHH--HHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            3455554 7776311111  1122222221       56999999999974         11112222333444431   


Q ss_pred             -hc--CCCcEEEeee--ccCCCHHHHHHHHHHHHhhcC
Q 029929          148 -SK--GNIPYFETSA--KEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       148 -~~--~~~~~~~~s~--~~~~~i~~~~~~i~~~~~~~~  180 (185)
                       ..  ....++.+|+  ..+.|++++.+.+.+.+++..
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             21  2247899999  566679999999998877654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.13  E-value=5.9e-12  Score=93.40  Aligned_cols=135  Identities=13%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc----cc---
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----LG---   74 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~---   74 (185)
                      .+|+++|.+|+|||||+|+|++....       ....++++  .....+.+...   +.++||||-.....    ..   
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            58999999999999999999976311       12222222  22333443332   67899999432211    11   


Q ss_pred             -cch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929           75 -VAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (185)
Q Consensus        75 -~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (185)
                       ..+  ....+.++++++.........+..     .   ......+.|+++++||+|..+.   .........+....+ 
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~---d~l~~~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g-  303 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----F---DYVSGGRRAFTCHFSNRLTIHR---TKLEKADELYKNHAG-  303 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----E---EEEESSSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBT-
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE-----E---EEecCCCceEEEEecCcccccc---ccHHHHHHHHHHHhC-
Confidence             111  256788999998843211111100     1   1111226799999999998863   233333333444444 


Q ss_pred             CcEEEeeec
Q 029929          152 IPYFETSAK  160 (185)
Q Consensus       152 ~~~~~~s~~  160 (185)
                      ..+++.++.
T Consensus       304 ~~l~p~~~~  312 (368)
T 3h2y_A          304 DLLSPPTPE  312 (368)
T ss_dssp             TTBCSSCHH
T ss_pred             CccCCCchh
Confidence            344444443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=4.1e-10  Score=83.55  Aligned_cols=101  Identities=15%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-eeecHHHHHH
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKA  144 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~  144 (185)
                      ..+.|......+.+.+|++++|+|+.+++     ..|...+.+...     +.|+++|+||+|+.+... .+...+.+..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~  124 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY  124 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence            35778888888889999999999999853     344444544432     679999999999976421 1111222233


Q ss_pred             HHHhcCC--CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       145 ~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      .+...+.  .+++.+||++|.|++++++.|.+..
T Consensus       125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            3444442  2799999999999999999997754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.99  E-value=6.2e-10  Score=82.63  Aligned_cols=101  Identities=16%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-eeecHHHHHH
Q 029929           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKA  144 (185)
Q Consensus        66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~  144 (185)
                      .++.|......+...++++++|+|+.++++     .|...+.+.+.     +.|+++|+||+|+.+... .+...+....
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~  126 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR  126 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence            477888888888899999999999998763     23333333332     569999999999976421 1111222333


Q ss_pred             HHHhcCC--CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       145 ~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      .+...+.  .+++.+||++|.|++++++.|.+..
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444442  3789999999999999999998765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.96  E-value=9.3e-10  Score=78.75  Aligned_cols=99  Identities=15%  Similarity=0.104  Sum_probs=68.5

Q ss_pred             ecCCChh-hhcccccchhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929           62 WDTAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS  138 (185)
Q Consensus        62 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  138 (185)
                      -..|||. .........+..+|+++.|+|+.+|.+...  +..+       .     .++|.++|+||+|+.+.    ..
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l-----~~kp~ilVlNK~DL~~~----~~   67 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L-----KNKPRIMLLNKADKADA----AV   67 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C-----SSSCEEEEEECGGGSCH----HH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H-----CCCCEEEEEECcccCCH----HH
Confidence            3578865 455666778899999999999999877642  2222       1     16799999999999852    11


Q ss_pred             HHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          139 EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      .+....+....+ .+++.+||.++.|++++++.+.+.+.
T Consensus        68 ~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           68 TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence            222333333334 68999999999999999998888765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.79  E-value=1.8e-08  Score=76.01  Aligned_cols=90  Identities=19%  Similarity=0.061  Sum_probs=51.4

Q ss_pred             EEEEEecCCChhhhc----cccc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           57 FTLQIWDTAGQERFQ----SLGV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~----~~~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +.+.++||+|.....    ....  .....+|.+++|+|+.......   .....+...       -.+..+|+||.|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~-------~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA-------TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh-------CCCeEEEEECCCCc
Confidence            678899999932211    1111  1223579999999998643222   222333321       12567999999986


Q ss_pred             CCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ..      ...+.......+ .|+.+++.  |+++
T Consensus       253 ~~------gG~~ls~~~~~g-~PI~fig~--Ge~v  278 (443)
T 3dm5_A          253 AK------GGGALSAVAATG-APIKFIGT--GEKI  278 (443)
T ss_dssp             SS------HHHHHHHHHTTC-CCEEEEEC--SSST
T ss_pred             cc------ccHHHHHHHHHC-CCEEEEEc--CCCh
Confidence            53      223344444455 78887775  5543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=6.9e-09  Score=74.26  Aligned_cols=57  Identities=23%  Similarity=0.400  Sum_probs=35.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ...++|+++|.+|+|||||+|++.+.... ....++++....  .+....   .+.++||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence            34589999999999999999999987632 333333332221  222222   5678999994

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.66  E-value=1.1e-08  Score=72.41  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ++++++|.+|+|||||+|++.+.... ....++.+  .....+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGIT--KGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCc--cceEEEEeC---CCEEEEECCCccc
Confidence            58999999999999999999987653 22222222  212222222   2568999999543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.57  E-value=4.8e-08  Score=76.27  Aligned_cols=63  Identities=22%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcc-eeeeEEEEE--EE-CCcEEEEEEecCCChh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-GADFLTKEV--QF-EDRLFTLQIWDTAGQE   68 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~~~D~~g~~   68 (185)
                      .....|+|+|.+|+|||||+|+|++....-....++ +.+.....+  .. ......+.++||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            456899999999999999999999876421111111 111112111  11 1233478899999944

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.55  E-value=3.9e-07  Score=68.87  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      +..|+++|++|+||||++..|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.53  E-value=4.8e-08  Score=73.60  Aligned_cols=91  Identities=18%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             EEEEEEecCCChhh--hc----ccccc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           56 LFTLQIWDTAGQER--FQ----SLGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        56 ~~~~~~~D~~g~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      .+.+.++||||...  ..    .....  .....|.+++|+|+.......   .....+.+..       .+..+|+||.
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKl  248 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKM  248 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEecc
Confidence            45678999999432  11    11111  112468999999998643222   2223333222       2578999999


Q ss_pred             CCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      |....      ...........+ .|+.+++.  |+++
T Consensus       249 D~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          249 DGTAK------GGGALSAVVATG-ATIKFIGT--GEKI  277 (433)
T ss_dssp             GGCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred             ccccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence            97643      223334444455 78887775  5543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.46  E-value=4.9e-07  Score=71.32  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..++|+|+.|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.44  E-value=8.1e-08  Score=67.97  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=60.4

Q ss_pred             CCChhh-hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929           64 TAGQER-FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (185)
Q Consensus        64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  142 (185)
                      .|||.. ........+..+|+++.|+|+.+|.+....     .+. ..      ++|.++|+||+|+.+.    ...+..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~----~~~~~~   67 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE----KTTKKW   67 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH----HHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH----HHHHHH
Confidence            466543 334566778899999999999987665421     011 11      5699999999999863    112233


Q ss_pred             HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAK  174 (185)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~  174 (185)
                      ..+....+ .++ .+||.++.|++++++.+..
T Consensus        68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence            33344444 677 9999999999999887643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.42  E-value=7.9e-07  Score=64.04  Aligned_cols=92  Identities=18%  Similarity=0.087  Sum_probs=53.2

Q ss_pred             EEEEEEecCCChhh--hcc-ccc-----chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 029929           56 LFTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (185)
Q Consensus        56 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK  126 (185)
                      .+.+.++||||...  ... ...     .....+|.+++|+|+....   ........+..        ..| ..+|+||
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk  248 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITK  248 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEEC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeC
Confidence            35688999999554  211 111     1234689999999987432   22222233322        234 6789999


Q ss_pred             CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929          127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      .|....      ...........+ .|+.+++  .|+++++
T Consensus       249 ~D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          249 MDGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GGGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             CCCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence            997542      223344555555 7887776  5666544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.36  E-value=1.7e-07  Score=67.66  Aligned_cols=91  Identities=13%  Similarity=0.030  Sum_probs=59.2

Q ss_pred             cccchhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (185)
                      +....+.++|.+++|+|+.+|..... +.+++...    ...   ++|.++|+||+|+.+........+...+.....+ 
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-  150 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-  150 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-
Confidence            33446789999999999997654433 33333322    122   6789999999999864110011234444444455 


Q ss_pred             CcEEEeeeccCCCHHHHHHH
Q 029929          152 IPYFETSAKEGFNVEAAFEC  171 (185)
Q Consensus       152 ~~~~~~s~~~~~~i~~~~~~  171 (185)
                      .+++.+|+.++.|+++++..
T Consensus       151 ~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             CCEEECCHHHHTTCTTTGGG
T ss_pred             CeEEEEecCCCCCHHHHHhh
Confidence            79999999999988776543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.25  E-value=8.2e-06  Score=61.81  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+..-|.|+|++++|||||+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34567889999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.19  E-value=3.5e-06  Score=61.48  Aligned_cols=91  Identities=14%  Similarity=0.049  Sum_probs=49.3

Q ss_pred             EEEEecCCChhhhcccc----cc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           58 TLQIWDTAGQERFQSLG----VA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        58 ~~~~~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .+.++|++|........    ..  ..-..|-.++++|+....   .+......+.+..      + ...+++||.|...
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~------~-it~iilTKlD~~a  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV------K-IDGIILTKLDADA  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS------C-CCEEEEECGGGCS
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc------C-CCEEEEeCcCCcc
Confidence            45678999943221111    10  112478899999987542   2222233333221      1 3478899999643


Q ss_pred             CCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929          132 GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      .      .-.+.......+ .|+.+++  +|+++++
T Consensus       283 ~------~G~~l~~~~~~~-~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 R------GGAALSISYVID-APILFVG--VGQGYDD  309 (328)
T ss_dssp             C------CHHHHHHHHHHT-CCEEEEE--CSSSTTC
T ss_pred             c------hhHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence            2      122334445555 7888887  6666543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=1.2e-05  Score=59.16  Aligned_cols=86  Identities=10%  Similarity=0.005  Sum_probs=53.5

Q ss_pred             hhccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ...++|.+++|.+. +|.... .+.+++......       ++|.++|+||+|+.+.... ...+.........+ ++++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G-~~v~  196 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG-YRVL  196 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT-CCEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC-CcEE
Confidence            45789999988665 454332 234443322211       6688999999999864110 01122233333445 7899


Q ss_pred             EeeeccCCCHHHHHHHH
Q 029929          156 ETSAKEGFNVEAAFECI  172 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i  172 (185)
                      .+|+.++.|++++...+
T Consensus       197 ~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ECBTTTTBTHHHHHHHH
T ss_pred             EEecCCCcCHHHHHHhc
Confidence            99999999999887643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.00  E-value=5.5e-07  Score=68.96  Aligned_cols=101  Identities=10%  Similarity=-0.022  Sum_probs=54.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--hcccc--------c
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~   75 (185)
                      ..+..|+++|.+||||||+.++|....... ..++.............+......+||..|...  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999987543110 011111000000000011112335788888632  22222        4


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLI  108 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  108 (185)
                      .++...++.++|+|.++. +.+....|...+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            455567888999999986 34444555554443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.84  E-value=1.2e-05  Score=53.48  Aligned_cols=23  Identities=52%  Similarity=0.878  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +++++|+.|||||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.84  E-value=0.00012  Score=55.48  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHH
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~   29 (185)
                      .+..|+++|..|+||||++..|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678889999999999998875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.80  E-value=1.9e-05  Score=52.17  Aligned_cols=31  Identities=19%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      |...+...-.|+++|++||||||+++.|.+.
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4444444457899999999999999988653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.75  E-value=1.8e-05  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.709  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|++|||||||++.+.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999998743

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.72  E-value=2.1e-05  Score=53.14  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+|+.|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.66  E-value=2.8e-05  Score=52.59  Aligned_cols=22  Identities=45%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++++|+.|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5789999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.66  E-value=3e-05  Score=51.90  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.++++|++|||||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.63  E-value=0.00017  Score=52.08  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|||||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999998 53

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.63  E-value=3.4e-05  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.59  E-value=4.1e-05  Score=52.58  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.58  E-value=4.3e-05  Score=52.53  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++|+|+.|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.58  E-value=5.8e-05  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.57  E-value=5.9e-05  Score=50.87  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      |......+..|+|+|++||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4444556688999999999999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.56  E-value=4.1e-05  Score=52.10  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|+|+|++|||||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.56  E-value=5.1e-05  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.720  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -|+|+|++|||||||++.|....
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57889999999999999998653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.55  E-value=5.2e-05  Score=51.64  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      --|+++|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            357899999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.55  E-value=4.8e-05  Score=50.13  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~   29 (185)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.54  E-value=5.7e-05  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999998765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.53  E-value=5.8e-05  Score=49.61  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.52  E-value=6.6e-05  Score=52.44  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 029929            8 LLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~   29 (185)
                      +-.|+|+|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.51  E-value=5.1e-05  Score=52.72  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999888764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.51  E-value=8.4e-05  Score=50.47  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +...|+|.|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.49  E-value=6.7e-05  Score=50.14  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++++|++|||||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.49  E-value=7.2e-05  Score=50.60  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.48  E-value=8.4e-05  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|+++|+.|||||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.47  E-value=7.4e-05  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.|+++|++||||||+++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.47  E-value=7.5e-05  Score=52.05  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.47  E-value=7.6e-05  Score=50.58  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|+|+|++||||||+++.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997643

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.47  E-value=8e-05  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+|+||+|||||||+++|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.46  E-value=6.2e-05  Score=51.91  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.45  E-value=8.1e-05  Score=48.76  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.44  E-value=8.2e-05  Score=52.52  Aligned_cols=22  Identities=18%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.44  E-value=8.2e-05  Score=48.78  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQY   28 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l   28 (185)
                      -|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.43  E-value=8e-05  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.42  E-value=9.2e-05  Score=50.02  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|+|+|++||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.42  E-value=0.00011  Score=49.73  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999976

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.42  E-value=9.2e-05  Score=49.68  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|+.|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.42  E-value=8.1e-05  Score=52.59  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999988764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.41  E-value=8.1e-05  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.41  E-value=0.00013  Score=49.23  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+..|+|.|++||||||+.+.|...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.40  E-value=8.6e-05  Score=49.22  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.++++|++|+|||||++.+.+.-
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.40  E-value=8.6e-05  Score=51.66  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.39  E-value=0.0001  Score=54.35  Aligned_cols=24  Identities=42%  Similarity=0.594  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      .++++|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.39  E-value=0.00013  Score=50.19  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.39  E-value=8.9e-05  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.00012  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.|+++|++||||||+.+.|...
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47899999999999999998743

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.38  E-value=7.7e-05  Score=50.84  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.38  E-value=9.1e-05  Score=52.43  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.37  E-value=9.8e-05  Score=52.18  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.37  E-value=9.7e-05  Score=51.71  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.37  E-value=0.0001  Score=51.02  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.37  E-value=0.00013  Score=49.81  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.37  E-value=0.00012  Score=49.46  Aligned_cols=24  Identities=25%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.|+++|++||||||+.+.+.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.37  E-value=0.00012  Score=52.77  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+|+.|||||||++.+.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999998754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.36  E-value=0.00013  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.36  E-value=0.00013  Score=49.34  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.36  E-value=0.0001  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.36  E-value=0.00011  Score=51.22  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.36  E-value=0.00012  Score=51.39  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|+.|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.36  E-value=0.0001  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.36  E-value=0.00012  Score=51.85  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|+.|||||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.35  E-value=0.00014  Score=49.68  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.35  E-value=0.00016  Score=48.33  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|++.|++||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.35  E-value=0.00017  Score=50.37  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .+..|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.35  E-value=0.00011  Score=51.47  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.34  E-value=0.00018  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.32  E-value=0.00019  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|+++|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.32  E-value=0.00018  Score=47.60  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..-++++|+.|||||||++++...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            456889999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.32  E-value=0.00012  Score=52.16  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.32  E-value=0.00012  Score=51.64  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.31  E-value=0.00012  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.31  E-value=0.00018  Score=49.31  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.30  E-value=0.00019  Score=47.92  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      +..|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.30  E-value=0.00015  Score=52.59  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...-|+|+|+.|||||||++.+.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3467899999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.30  E-value=0.00013  Score=51.25  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.30  E-value=0.00018  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999998763

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.30  E-value=0.00018  Score=47.75  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|+++|++||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.29  E-value=0.00016  Score=52.06  Aligned_cols=24  Identities=38%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      .++++|++|||||||++.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.29  E-value=0.00017  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.29  E-value=0.00019  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.29  E-value=0.00015  Score=49.81  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|++|||||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.29  E-value=8.5e-05  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHH-hC
Q 029929           10 KVIILGDSGVGKTSLMNQYV-NR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~-~~   31 (185)
                      -++|+|+.|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 65

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.29  E-value=0.00015  Score=53.52  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.29  E-value=0.00014  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.28  E-value=0.00019  Score=48.85  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+++|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.28  E-value=0.00015  Score=49.67  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+..|+|+|++||||||+.+.|...
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.28  E-value=0.00022  Score=47.51  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ++..|++.|++||||||+.+.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.27  E-value=0.00022  Score=51.76  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..++-|+++|+.|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.26  E-value=0.00019  Score=49.40  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ...|+|.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.26  E-value=0.00019  Score=47.83  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.25  E-value=0.00017  Score=53.21  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.25  E-value=0.00018  Score=51.11  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.24  E-value=0.00019  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+++|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999988653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.24  E-value=0.00019  Score=50.74  Aligned_cols=23  Identities=48%  Similarity=0.668  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.24  E-value=0.00012  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999988654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.24  E-value=0.00021  Score=48.77  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.23  E-value=0.00033  Score=47.43  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|+++|++||||||+++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999999865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.23  E-value=0.00012  Score=49.07  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.22  E-value=0.00026  Score=49.39  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|+++|+.|||||||++.+.+.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.22  E-value=0.00028  Score=47.81  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.22  E-value=0.00029  Score=47.50  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..|+|.|.+||||||+.+.|...-
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            579999999999999999998753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.21  E-value=0.00025  Score=50.73  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+.-|++.|++||||||+.+.|...
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.21  E-value=0.00031  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..+.-|+|+|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.21  E-value=0.00021  Score=52.63  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.20  E-value=0.00027  Score=48.86  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|+|+|.+||||||+.+.|...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999988653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.20  E-value=0.00033  Score=47.27  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+..|+|.|++||||||+.+.|...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988743

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.19  E-value=0.00023  Score=49.80  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|+|||||++.+.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.19  E-value=0.00011  Score=48.54  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+.|+|+.|||||||++.+.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999988653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.19  E-value=0.00019  Score=53.14  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+++|+|+.|||||||++.+.+..
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.19  E-value=0.00022  Score=52.57  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46899999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.19  E-value=0.00023  Score=52.86  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            46899999999999999998765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.18  E-value=0.00023  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999998765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.18  E-value=0.00031  Score=46.12  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+.++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.17  E-value=0.00024  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.16  E-value=6.1e-05  Score=54.36  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|||||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.16  E-value=0.00025  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.16  E-value=0.00041  Score=46.12  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|+++|.+||||||+++.+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.16  E-value=0.00021  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.16  E-value=0.00027  Score=47.39  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|++.|++||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.15  E-value=0.00025  Score=52.57  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46899999999999999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.15  E-value=0.00026  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.15  E-value=0.00033  Score=46.35  Aligned_cols=23  Identities=30%  Similarity=0.629  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|++.|++||||||+.+.|...
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHH
Confidence            56899999999999999998743

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.15  E-value=0.012  Score=44.57  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHH
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~   29 (185)
                      ....-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345667799999999999999665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.14  E-value=0.00034  Score=45.62  Aligned_cols=22  Identities=14%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|++.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.14  E-value=0.00026  Score=53.36  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++|+|+.|||||||++.+.+.-
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999998653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.14  E-value=0.00015  Score=52.28  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            68899999999999999887654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.14  E-value=0.00029  Score=52.36  Aligned_cols=22  Identities=18%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.13  E-value=0.00037  Score=47.06  Aligned_cols=23  Identities=43%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..-|+++|+.||||||+++.+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.13  E-value=0.00025  Score=52.46  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.13  E-value=0.00024  Score=49.81  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+..|+++|++||||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.13  E-value=0.00029  Score=50.85  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .-.++++|+.||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34788999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.12  E-value=0.00031  Score=49.32  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|+|+|++|||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            4789999999999999998653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.11  E-value=0.00035  Score=48.00  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.11  E-value=0.00033  Score=45.86  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|++.|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.11  E-value=0.00042  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ++.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.11  E-value=0.00036  Score=47.35  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|+|.|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.11  E-value=0.0004  Score=48.72  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 029929            9 LKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~   29 (185)
                      ..|.++|+.||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.10  E-value=0.0004  Score=48.89  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999998753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.10  E-value=0.00024  Score=51.93  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.10  E-value=0.00039  Score=46.01  Aligned_cols=23  Identities=30%  Similarity=0.690  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.09  E-value=0.00041  Score=48.57  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .++.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.09  E-value=0.00043  Score=50.02  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..-|+|+|+.|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.09  E-value=0.00034  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      --++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.08  E-value=0.00028  Score=54.52  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|++|||||||++++.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.08  E-value=0.00045  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |+|+|+|||||+|....|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999988754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.07  E-value=0.00036  Score=49.59  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|++|+|||||++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999998753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.07  E-value=0.00021  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46899999999999999998765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.06  E-value=0.00035  Score=51.07  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.++++|++|+|||||++.+.+.-
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            358999999999999999998653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.06  E-value=0.00033  Score=52.24  Aligned_cols=22  Identities=32%  Similarity=0.714  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.05  E-value=0.00045  Score=47.82  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++.|.+.|++||||||+.+.+...
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999988643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.04  E-value=0.00041  Score=46.28  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.04  E-value=0.00027  Score=46.79  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=16.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +..|++.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.04  E-value=0.0005  Score=44.90  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.04  E-value=0.00044  Score=45.67  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988763

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.02  E-value=0.00097  Score=45.34  Aligned_cols=67  Identities=19%  Similarity=0.041  Sum_probs=44.3

Q ss_pred             EEEEEEecCCCh-hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           56 LFTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        56 ~~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .+.+.++|+|+. ...  .....+..+|.+|++...+ ..+...+..+...+....      +.++.+|+|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCcc
Confidence            356789999885 322  2344667899999999876 344555555555554321      346889999998653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.01  E-value=0.00045  Score=47.39  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999998743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.99  E-value=0.00016  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.98  E-value=0.00048  Score=45.56  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -.+|+|+.|||||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.97  E-value=0.00061  Score=47.75  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.+++.|++|+|||||++++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.97  E-value=0.00058  Score=48.71  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .++.|+|.|++||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.97  E-value=0.00021  Score=52.61  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998765

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00042  Score=52.86  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999998753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.96  E-value=0.0006  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..+++.|++|+|||+|+..+...-
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999987643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.95  E-value=0.00044  Score=45.61  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.94  E-value=0.00066  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.94  E-value=0.00052  Score=48.07  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -.|+++|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.93  E-value=0.00064  Score=46.81  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.93  E-value=0.00035  Score=48.24  Aligned_cols=24  Identities=33%  Similarity=0.606  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..-|+|.|+.||||||+++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            356899999999999999998775

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.92  E-value=0.00057  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      --++++|+.||||||++..+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4688999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.89  E-value=0.00086  Score=45.02  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -...|+++|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999988764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.88  E-value=0.0006  Score=48.87  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.88  E-value=0.00069  Score=46.05  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|++.|.+||||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999988654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.87  E-value=0.00065  Score=52.09  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      --++|+|+.|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4688999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.86  E-value=0.0054  Score=44.64  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            347899999999999999999765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.86  E-value=0.00077  Score=48.32  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+..+++.|++|+|||+|++++....
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567888999999999999998653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.85  E-value=0.00085  Score=42.80  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999998764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.85  E-value=0.00073  Score=43.42  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.85  E-value=0.00074  Score=49.64  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.84  E-value=0.00061  Score=46.11  Aligned_cols=22  Identities=14%  Similarity=0.321  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+++.|+||+||||++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.84  E-value=0.00077  Score=46.59  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.84  E-value=0.00077  Score=45.84  Aligned_cols=21  Identities=29%  Similarity=0.180  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.82  E-value=0.0011  Score=45.85  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..-|++.|++||||||+++.+....
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999987653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.78  E-value=0.00062  Score=49.45  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      --++|+|+.|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            356789999999999999999764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.78  E-value=0.00083  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999999886

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.77  E-value=0.0011  Score=46.38  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +..+++.|++|+|||++++++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.76  E-value=0.00088  Score=51.30  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.76  E-value=0.00097  Score=47.69  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-.+++.|++|+|||++++.+.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998643

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.74  E-value=0.0012  Score=45.62  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .-..++.|+|++||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.73  E-value=0.0011  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+++.|++|+|||+|++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.72  E-value=0.0014  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.72  E-value=0.0013  Score=48.13  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.70  E-value=0.0015  Score=46.10  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .....+++.|++|+|||++++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.70  E-value=0.0011  Score=47.61  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.+++.|++|+|||+|++++.+..
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCcCHHHHHHHHHHHh
Confidence            468999999999999999998653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.70  E-value=0.0016  Score=46.74  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.+++.|++|+|||++++.+....
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            468999999999999999987643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.69  E-value=0.0011  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +++++|+.|||||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.68  E-value=0.0012  Score=44.72  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.68  E-value=0.0012  Score=45.34  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|.|++|+|||||++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.67  E-value=0.0014  Score=45.28  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ....|+++|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.66  E-value=0.0015  Score=46.96  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.65  E-value=0.0012  Score=48.95  Aligned_cols=19  Identities=32%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999976

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.65  E-value=0.0012  Score=47.97  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++|+|||||++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.65  E-value=0.0016  Score=47.27  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.63  E-value=0.0015  Score=50.90  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0017  Score=51.32  Aligned_cols=23  Identities=17%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.61  E-value=0.0013  Score=46.74  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998874

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.60  E-value=0.0014  Score=44.08  Aligned_cols=24  Identities=50%  Similarity=0.711  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..|+++|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.60  E-value=0.0015  Score=44.05  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .|.+.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.58  E-value=0.0012  Score=51.92  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68899999999999999988754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.55  E-value=0.0022  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..+|+++|++|+||||+.+.+..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46799999999999999987653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.55  E-value=0.0019  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67899999999999999988754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0019  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.53  E-value=0.00081  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=16.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .+-|+|.|+.||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.51  E-value=0.0018  Score=42.89  Aligned_cols=21  Identities=14%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.51  E-value=0.0015  Score=49.24  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +.-|+++|++||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456888999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0019  Score=50.29  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.50  E-value=0.0017  Score=46.70  Aligned_cols=21  Identities=24%  Similarity=0.615  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 029929            9 LKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~   29 (185)
                      -.++++|+.|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999998875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.49  E-value=0.0025  Score=46.26  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...+++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0021  Score=48.57  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.|++.||||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.48  E-value=0.0025  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.47  E-value=0.0019  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.|++.|++|+|||+|++++....
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            579999999999999999998653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.47  E-value=0.0019  Score=46.24  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.47  E-value=0.0017  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.47  E-value=0.0019  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      --|+++|++|+||||++..+..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            4688999999999999988763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.47  E-value=0.0023  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.46  E-value=0.0015  Score=47.92  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998773

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.45  E-value=0.0018  Score=47.28  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+++.|++|+||||+++.+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999987653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.45  E-value=0.0024  Score=50.45  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0023  Score=48.43  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            458999999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.45  E-value=0.0019  Score=44.66  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.44  E-value=0.0021  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|.|++|+|||||++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.44  E-value=0.0012  Score=46.43  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +...|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999888754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.43  E-value=0.0028  Score=45.65  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +.-|+|+|++|||||||...+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            446788999999999999999754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.41  E-value=0.0023  Score=46.19  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.39  E-value=0.0014  Score=51.75  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999888654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.39  E-value=0.0021  Score=47.32  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.|+|++|||||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.38  E-value=0.0031  Score=46.00  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|+|+|++|||||||...|...-
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            368999999999999999997653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.37  E-value=0.0029  Score=43.86  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998765

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.36  E-value=0.0025  Score=43.43  Aligned_cols=23  Identities=13%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ++.|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.003  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~~   33 (185)
                      ++++|+.|||||||++.+.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            78999999999999999987653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0024  Score=47.72  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.|++.||||+|||+|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            457999999999999999999865

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.33  E-value=0.0028  Score=45.82  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|+|+|++|||||||...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5788999999999999999765

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.33  E-value=0.0011  Score=42.24  Aligned_cols=24  Identities=13%  Similarity=0.256  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356999999999999999888754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.32  E-value=0.0028  Score=42.90  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4678999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.32  E-value=0.0012  Score=51.93  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            67899999999999999887654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.30  E-value=0.001  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++|+|||+|++++...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999999764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.28  E-value=0.0027  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+++.|++|+||||+++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.27  E-value=0.0026  Score=49.03  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.++++|++|+|||+|++++.+..
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999998653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.27  E-value=0.0028  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.|++.|++|+|||+|++++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999865

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.26  E-value=0.0031  Score=44.28  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ...|++.|++|+|||++++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            3578999999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.26  E-value=0.0029  Score=46.59  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.26  E-value=0.0016  Score=51.27  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            67899999999999999887654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.25  E-value=0.0027  Score=49.56  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.++++|++|+|||||++.+.+..
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc
Confidence            368999999999999999987643

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.24  E-value=0.0028  Score=48.15  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++|+|||||++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.22  E-value=0.0018  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..|+++|+.|||||||++.|.+..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh
Confidence            578999999999999999987654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.22  E-value=0.0024  Score=47.13  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-.+++.|++|+||||+++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.21  E-value=0.048  Score=39.37  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      +++-|++|+|||++++++...-
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh
Confidence            4445669999999999997653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.21  E-value=0.0042  Score=40.84  Aligned_cols=24  Identities=29%  Similarity=0.616  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.21  E-value=0.0036  Score=47.96  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.|++.|++|+|||+|++++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.20  E-value=0.0037  Score=46.08  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|++.|++|+|||+|++++...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0025  Score=46.20  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..-.+++.|+||+|||++++.+...
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999998754

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.18  E-value=0.0031  Score=46.71  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ...+++.|++|+|||++++.+....
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-48
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-45
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-44
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-43
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-42
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-42
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-40
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-39
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-39
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-39
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-37
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-36
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-36
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-35
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-35
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-35
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-34
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-34
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-34
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-32
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-31
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-29
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-28
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-28
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-27
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-27
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-26
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-25
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-25
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-24
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-22
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	5e-22
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-19
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-18
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-13
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-11
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-11
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	9e-10
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-09
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-09
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-08
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-07
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-04
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.002
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.002
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (386), Expect = 2e-48
 Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +           +    +++GNK+
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKS 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+    +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   + 
Sbjct: 118 DM---ETRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  151 bits (381), Expect = 2e-47
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 7/173 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   KSFDN+ NW              +   ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKC 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           DV+          +     A    I + ETSAK   NVE AF  +A++     
Sbjct: 122 DVNDKRQVSKERGE---KLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 3e-45
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A          V++GNK 
Sbjct: 65  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                  R    ++     +   ++ Y ETSAKE  NVE  F  +A   +  
Sbjct: 120 --IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (363), Expect = 1e-44
 Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E               +++GNK 
Sbjct: 66  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID----RYATSTVLKLLVGNK- 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                  + V E       A    +P+ ETSA +  NVE AF  +A+   ++  Q+ 
Sbjct: 121 --CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 3e-43
 Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+    +    E +A A      N+ + ETSA +  NVE AF+ I     +   Q++
Sbjct: 120 DLRHLRAVPTDEARAFAEK---NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (348), Expect = 1e-42
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +      N   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKC 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++          +     A      +FE SAK+  NV+  FE +     +
Sbjct: 121 DMEDERVVSSERGR---QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 2e-42
 Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)

Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +  L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LG
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           NK D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L 
Sbjct: 123 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  137 bits (344), Expect = 6e-42
 Identities = 135/177 (76%), Positives = 151/177 (85%), Gaps = 3/177 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPFVVLGNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+    +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E + E
Sbjct: 122 DL---ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 6e-41
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+S+  A+YR A   +L+YDV    SFDN+  W  E    A      +   ++LGNK
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNK 121

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
            D    + RVV  +  +   A +  +P+ ETSAK G NV+ AF  IAK   +
Sbjct: 122 VDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 6e-40
 Identities = 73/185 (39%), Positives = 107/185 (57%), Gaps = 16/185 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +       +  EN
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCEN 121

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    +
Sbjct: 122 PDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

Query: 178 KNEPQ 182
           K   Q
Sbjct: 179 KRMEQ 183

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 1e-39
 Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   ++++ L NW  +          +N   ++ GNK 
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA----RMLASQNIVIILCGNK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                ++         +  A +  + + ETSA  G NVE AF   A+  L      E
Sbjct: 120 --KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 1e-39
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV      D             +     +   +++GNK D
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVT---RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                +R V   +   + A K ++ + E SAK    V+ AFE + +  ++ 
Sbjct: 125 K---ENREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (327), Expect = 2e-39
 Identities = 111/173 (64%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  +  ++ T+Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FPFV+LGNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D +  + ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+ 
Sbjct: 122 IDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 3e-39
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +           N   +++GNK 
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKA 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++        E K     A +  + + E SAK G NVE AF   AK
Sbjct: 120 DLEAQRDVTYEEAK---QFAEENGLLFLEASAKTGENVEDAFLEAAK 163

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-37
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK+
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D++        +++     A +  + + ETSAK   NVE AF   AK   +   Q
Sbjct: 119 DLESRRDV---KREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 6e-36
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + +    SF+N+       +    P    N P +++G K D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLD 120

Query: 129 VDGGNSRVVSEK------------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +   + +   EK            +  A     G + Y E SA     ++  F+   +  
Sbjct: 121 LR--DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

Query: 177 LKNEP 181
           L   P
Sbjct: 179 LCPPP 183

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 8e-36
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD+
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
                +     +     A + N+ + ETSAK G+NV+  F  +A 
Sbjct: 118 ---ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 16/188 (8%)

Query: 1   MASR-RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           MA     ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLL 59

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
            ++DTAGQE +  L    Y   D  ++ + V    SF N+       L + +P    N P
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVP 115

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           F+++G + D          ++    + +  ++ +      G   Y E SA     ++  F
Sbjct: 116 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 175

Query: 170 ECIAKNAL 177
           +      L
Sbjct: 176 DEAIIAIL 183

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 3e-35
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 15/187 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+       +    P      PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQID 118

Query: 129 VDGGNSRVVSEKK----------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +    S +    K          A+        + Y E SA     ++  F+     AL+
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

Query: 179 NEPQEEE 185
               ++ 
Sbjct: 179 PPEPKKS 185

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  119 bits (298), Expect = 4e-35
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T   D   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++      V E K     A + N+ Y ETSAK   NV+  F  + +    
Sbjct: 120 DLEDKRQVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 9e-35
 Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++ +LGD+  GK+SL+++++   +         ++   KE+  + +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     F   AD  + V+ +    SF  ++      L              ++G +  
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHG-QLSSLRGEGRGGLALALVGTQDR 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           +   + RVV + +A+A CA      Y+ET A  G NV+  F+ +A+  +    Q++
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 1e-34
 Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNK 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKI 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++      + E ++    A      ++ TSAK+   +E  F  + K  ++
Sbjct: 119 DLEKERHVSIQEAES---YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 2e-34
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YR A   ++VYDV   +SF    +W +E   Q      ++    ++GNK D
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKID 119

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +          ++     A +  + +FETSAK G NV   F  I +
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-34
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F S+   + +     +LVY +   +SF ++   R++ +        E  P +++GNK D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +       SE +     A +   P+ ETSAK    V+  F  I +
Sbjct: 121 ESEREVSSSEGR---ALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 4e-34
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNK--- 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               ++   + +     A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+GD   GKT L+      +F   Y  T+  +    +++ + +   L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + ++   S +N+       +    P    N P +++GNK D
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKD 117

Query: 129 VDGGN----------SRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +                 V  ++ +      G   Y E SAK    V   FE   + AL+
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 5e-33
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  + V        L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCD- 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               +    E +     A    IPY ETSAK    VE AF  + +   ++
Sbjct: 120 ---LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 4e-32
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERFQSLGV-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           ERF+   V  +YR     V VYD+  M SF +L  W EE           + P +++GNK
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIA 173
            D+   ++  V    A+ + A   ++P FETSAK   +  +VEA F  +A
Sbjct: 119 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 9e-32
 Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 8/172 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           + +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +                +
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-------DIPTALVQ 113

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
             +D  +   +  ++     A +  + ++ TS KE  NV   F+ +A+  L+
Sbjct: 114 NKIDLLDDSCIKNEE-AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-31
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +  + RVV +++ +       N  + E+SAK   NV   F  + +   +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++++G  GVGK++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LV+ V    SF+ +  ++ + L      D + FP +++GNK D+
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADL 122

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           D        E +     A +  + Y E SAK   NV+ AF  + +   K +
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++G  GVGK++L  Q++   F + Y      D  TK    +     L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F ++   + R     +LV+ +N  +SF+ +     + L      D ++FP V++GNK 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKA 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D++   S+    +   +   +  ++ YFE SAK   NV+ AFE + +   K + Q
Sbjct: 122 DLE---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 9e-31
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E         P +    + GNK D
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +      +  + K     A   +  + ETSAK   N+   F  I++
Sbjct: 121 LTDVREVMERDAK---DYADSIHAIFVETSAKNAININELFIEISR 163

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 9e-29
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 16/181 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDS  GKT+L++ +    F   Y  T+  +  T   + + +   L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSP 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + ++    Y  +D  ++ +D++  ++ D++    +  + +  P    N   +++G K+D
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSD 117

Query: 129 VDGG----------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFN-VEAAFECIAKNAL 177
           +                 VS  +        G   Y E SA +  N V   F       +
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

Query: 178 K 178
            
Sbjct: 178 N 178

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       T            E +  +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N  +  +         L +    D      V    +  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--VLLVFANKQDL 113

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            +  N+  +++K          N     T A  G  +    + ++  
Sbjct: 114 PNAMNAAEITDKLGLHS-LRHRNWYIQATCATSGDGLYEGLDWLSNQ 159

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F  L   +Y  A C ++++DV    ++ N+ NW  + +        EN P V+ GNK D+
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDI 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
                +    K        K N+ Y++ SAK  +N E  F  +A+  + +   E
Sbjct: 120 -----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 8e-28
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK++L  Q+  + F   Y  TI  D   K  + +++   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  D  ++VY V    SF++++ + +  L      D E+FP +++ NK D+
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANKVDL 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNALK 178
              + R V+  +     A+K NIPY ETSAK+   NV+  F  + +   +
Sbjct: 122 M--HLRKVTRDQ-GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 2e-27
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+   +          + TLQI DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-KSICTLQITDTTGSHQ 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L        I     D E+ P +++GNK D 
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIY--EQICEIKGDVESIPIMLVGNKCDE 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                   SE +     A      + ETSAK   NV+  F+ +     + 
Sbjct: 121 SPSREVQSSEAE---ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 99.0 bits (245), Expect = 2e-27
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G +      +      T+++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+   + RG    V + D    +  +   N     L +      +  P +VLGNK D
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRD 115

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           + G        +K          I  +  S KE  N++   + + +++
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 8e-27
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++           TI           E R F L IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++           ++  NK D
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 114

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           + G  S    ++  +       +      SA  G ++    + +  +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 96.6 bits (239), Expect = 4e-26
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG +  T   +       L +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN----LKLNVWDLGGQT 72

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y      + V D          +      L +    + ++   +V  NK D
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQD 129

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             G  S     K+         +     +SA +G  +    + +     + +
Sbjct: 130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 8e-26
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+++ +    +       T+G +  T   +         +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y G    + V D       D             +  +  +   ++  NK D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQD 124

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +         ++K         N     + A  G  +      +  N
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.4 bits (236), Expect = 1e-25
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S     +++++LG    GKT+L+ Q  +   S+    T G +  + + Q     F L 
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQG----FKLN 63

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WD  GQ + +    +++   D  + V D    K F+       E L +         P 
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPV 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           ++  NK D+          +                 SA  G  V+     + KN
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 4e-25
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
                     R  +  VLVYD+    SF+ +   +           P+N   +++GNK D
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI---KKPKNVTLILVGNKAD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNALK 178
           +D        E +     A++    ++E SA  G  N+   F  + +   +
Sbjct: 118 LDHSRQVSTEEGE---KLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.4 bits (228), Expect = 1e-24
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 15/172 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG    GKT+L++   N + +     T+   +     +          +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   ++   +  V + D    + FD      +     A   + ++ PFV+LGNK D 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDA 113

Query: 130 DGGNSRV-------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               S         +           +  +  F  S         AF+ +++
Sbjct: 114 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (221), Expect = 1e-23
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+ ILG   VGK+SL  Q+V  +F + Y  TI  +  TK +    + + LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM---VGKVQIPIMLVGNKKD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +         E K     A   N  + E+SAKE       F  I   A K
Sbjct: 121 LHMERVISYEEGK---ALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 1e-22
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 8/172 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       T              +    Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y   D  + V D           +     L +    +      VV  NK D
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++   +                    F+TSA +G  ++ A E + +     +
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +           +   +         +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D    +          + L      D      ++  NK D
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQD 127

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           V    +     +  K               A  G  +    E +   
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 5e-22
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L   +   +   +           + +  +    +L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L        D  V+VY V    SF       E  +        ++ P +++GNK+D+
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSF---EKASELRVQLRRARQTDDVPIILVGNKSDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
                  V E +    CA   +  + ETSA    NV+A FE + +        +
Sbjct: 118 VRSREVSVDEGR---ACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 6e-22
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 4/171 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+++G+ GVGK++L N +     S      +  +   +     D      I     + +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            ++  +  +           V  +    +     E  +        E+ P +++GNK+D+
Sbjct: 65  GENEWLHDHCMQVGDA-YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
                  VSE +    CA   +  + ETSA    NV+  FE I +      
Sbjct: 124 VRCREVSVSEGR---ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 21/176 (11%), Positives = 48/176 (27%), Gaps = 17/176 (9%)

Query: 6   RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           R   ++++LG    GK++++ Q            T G      + Q +       ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSG--IFETKFQVDK--VNFHMFDVG 55

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENF 118
           GQ   +   +  +      + V   +        +N           F    +       
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
             ++  NK D+     +V++ K        +         A      +        
Sbjct: 116 SVILFLNKQDLLAE--KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKY 169

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.8 bits (193), Expect = 3e-19
 Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 42/206 (20%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K+++LG    GK++ + Q    +  +    T G         FE +    ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENFPF 120
              +      +      + +   +        +            F    +     N   
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 121 VVLGNK------------------------TDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156
           ++  NK                          +      +V   + K     +  + +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 157 TSAKEGFNVEAAF----ECIAKNALK 178
           T+A    N+   F    + I  + LK
Sbjct: 175 TTAINTENIRLVFRDVKDTILHDNLK 200

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 1e-18
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 1/125 (0%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            V+ +G    GKT L  + +  ++ +    +I       +V          I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
              L   F   A   V V D    +            ++  S +   +   ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 DGGNS 134
               S
Sbjct: 121 AMAKS 125

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.9 bits (188), Expect = 2e-18
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 43/203 (21%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG    GK++++ Q      +       G      E  F  +    +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-------LNNWREEFLIQASPSDPENFPFV 121
             +   +  + G    +    ++              ++   + F    +     +   +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFE 156
           +  NK D+     ++        +    G                          I    
Sbjct: 114 LFLNKKDLF--EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF 171

Query: 157 TSAKEGFNVEAAFECIAKNALKN 179
           T A +  NV+  F+ +    +KN
Sbjct: 172 TCATDTKNVQFVFDAVTDVIIKN 194

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.6 bits (182), Expect = 1e-17
 Identities = 26/203 (12%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+++LG    GK++ + Q      S     T G         F+ +    ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENFPFV 121
             +   +  +      + +  ++        ++           F    +    +N   +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFE 156
           +  NK D+     +++       +    G                          I    
Sbjct: 117 LFLNKKDLL--EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF 174

Query: 157 TSAKEGFNVEAAFECIAKNALKN 179
           T A +  N+   F  +    L+ 
Sbjct: 175 TCATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.3 bits (173), Expect = 2e-16
 Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 20/179 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +                  +      T   +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGHI 68

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + +   +    +  V + D    +         +  +         N P ++LGNK D
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKID 125

Query: 129 VD------------GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
                         G   +   +        +   +  F  S  +       F  +A+ 
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 12/174 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+            + T+ +        ++    TL  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 71  QS---LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +    L            +V      K       +  + L     S       ++  NK+
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 128 DVDGGNS-RVVSEKKAKAWCA----SKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           ++        + +             K ++   E    E    E   + +    
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 11/178 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
           V ++G    GK+SL+                        V          + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 68  -ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
               + LG+ F R      ++  V                 + A        P +V  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
            D+           KA A   ++  +     SA  G  + A  E +    +++ P  E
Sbjct: 123 VDLLEEE-----AVKALADALAREGLAVLPVSALTGAGLPALKEALHA-LVRSTPPPE 174

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.5 bits (137), Expect = 3e-11
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 2/169 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           L ++ + G S VGK+S +N  +NRK   +  +  G           D L  + +     A
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
              + +                    V++  D  +    + +           P +V+  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           K D           K  +              S++     + A+  I K
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 56.3 bits (134), Expect = 5e-11
 Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 14/170 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+I G    GK+SL+N    R+ +       G                L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASP---SDPENFPFVVLGN 125
                            +     V+   D       +            P   P  V+ N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           K D+                 +          SA+ G  V+     + ++
Sbjct: 121 KADI----------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 53.2 bits (126), Expect = 9e-10
 Identities = 27/165 (16%), Positives = 45/165 (27%), Gaps = 4/165 (2%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V I+G   VGK++L+N  +  K +                   +    +   DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
                 F        L     V+   D  +    E  + A    P      +L     +D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
                   E+  KA+            SA +   V      +   
Sbjct: 127 AAKYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 168

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 1e-09
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 3/168 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V   G S  GK+S +N   N+K   +   T G   L    +  D    + +      E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 69  RFQSLGVAFYRGADCC---VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
             + +   + R               V+           +  +     D      V+L  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
              +  G  +       +A  A  G++     S+ +   V+   + + 
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 8/177 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV I+G   VGK++L N  +N++ +       G      + +           DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 69  RFQSLGVAFYRGADCCVLVY-----DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           R   +            +V      DV V+         R++  +            VV 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 124 GNKTDV-DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                V           K  +         P   TSA +G+N++   + +   A  +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM-NLAYAS 183

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 17/183 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           V ++G   VGK++L++   + K     Y  T     L      + R F   + D  G   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFV--MADLPGLIE 61

Query: 70  FQS----LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF----PFV 121
                  LG  F R  +   ++  V  M   +  + + +   I    S+        P +
Sbjct: 62  GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++ NK D+        +E           + P F  SA     +      +A N L+N P
Sbjct: 122 IVANKMDMPE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA-NQLENTP 175

Query: 182 QEE 184
           +  
Sbjct: 176 EFP 178

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.8 bits (117), Expect = 2e-08
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V+I+G   VGK++L N+ V +K +   +   G      +   E    T ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 71  QSLGVAFYRGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
               ++         ++ + ++ +   D      +E    A          +++ NK + 
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
                    E++ K    S G       SA+   N++   E I K  L+ +  + E
Sbjct: 122 LR-----EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKK-LEEKGLDLE 171

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 3/171 (1%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           + I+G   VGK++L+N+ + +K S   +           +  E     +   DT G    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
           +   +           + DV ++        W  +  +  +       P ++  NK D  
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
              + ++   +  A       +     SA+ G NV+     + K+  +   
Sbjct: 127 QEKADLLPHLQFLASQ--MNFLDIVPISAETGLNVDTIAAIVRKHLPEATH 175

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 13/177 (7%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +I  G S VGK++L+ +   +K     +  +    +  E +    +         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA----SPSDPE--------NF 118
               +             +++V     +     E           P D E        + 
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIPYFETSAKEGFNVEAAFECIAK 174
           P +V  NK D       V++    K     S+ +  +   SAK G N+E     I +
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 179

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++I+G   VGK++L+N+ +N   +       G        +   R    +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 69  RFQSLGVAFY---------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
              +  V              AD  + V D +     ++                  N  
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK----------NKR 109

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++V+ NK DV    +    + K              + SA +G  +E   E I +
Sbjct: 110 YLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGEGLEKLEESIYR 158

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWDTAG 66
           L V + G++G GK+S +N         +  A  G   +T E        +  +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                     +          YD  ++ S         +              F  +  K
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFVRTK 171

Query: 127 TDVDGGNSRVVSEKK 141
            D D  N      + 
Sbjct: 172 VDSDITNEADGEPQT 186

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 10/159 (6%)

Query: 16  DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75
             G  +T++      +K              + +     R  +    D  G E   +  +
Sbjct: 47  KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI--DAPGHEVLMATML 104

Query: 76  AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135
           +     D  +LV   N                I            +++ NK DV      
Sbjct: 105 SGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEA 158

Query: 136 VVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECI 172
           +   ++ K +       N+P    SA    N+++  E I
Sbjct: 159 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI 197

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 24/184 (13%), Positives = 43/184 (23%), Gaps = 22/184 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           + + I G    GKT+L           +  +T   D L +  +    +            
Sbjct: 6   INLGIFGHIDHGKTTLSKVLT------EIASTSAHDKLPESQKRGITIDIGFSAFKLENY 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R               ++   V+     D      +      + +               
Sbjct: 60  RITL----VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115

Query: 129 VDGGNSRVVSEKKAK----------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           V    S     ++ K              +  N      SAK GF V+     I      
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL-- 173

Query: 179 NEPQ 182
           N  +
Sbjct: 174 NNAE 177

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 13/189 (6%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +       L ++++G  GVGK+S +N  +  +  +              V      FTL 
Sbjct: 25  LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLN 83

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-----EEFLIQASPSDP 115
           I DT G      +           +L   ++V+   D L+ +R     +      + S  
Sbjct: 84  IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG 143

Query: 116 ENF--PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +      +V          +     E  +K   A    +      +      +A    I 
Sbjct: 144 KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVV-----RSGASLKKDAQASDIP 198

Query: 174 KNALKNEPQ 182
              ++N  +
Sbjct: 199 VVLIENSGR 207

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 11  VIIL-GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++ L GD G GKT+L    +          +     + +       ++   ++  A  E 
Sbjct: 35  MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94

Query: 70  FQSLGVAFYRGADCCVLV 87
            + +G+  Y   D   L+
Sbjct: 95  LEFMGIRDYFNTDSICLI 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.92
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.92
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.91
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.9
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.89
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.88
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.82
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.8
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.79
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.79
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.71
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.64
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.61
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.53
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.48
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.46
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.32
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.27
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.22
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.78
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.61
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.55
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.53
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.52
d1okkd2	207	GTPase domain of the signal recognition particle r	98.52
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.52
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.48
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.47
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.23
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.96
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.94
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.93
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.91
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.9
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.78
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.78
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.73
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.73
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.73
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.73
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.69
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.68
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.68
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.65
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.61
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.6
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.59
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.59
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.55
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.54
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.53
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.53
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.52
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.52
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.5
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.5
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.49
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.49
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.48
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.48
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.46
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.45
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.45
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.44
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.42
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.41
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.39
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.39
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.38
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.37
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.36
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.34
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.33
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.33
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.31
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.3
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.29
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.26
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.24
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.24
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.22
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.22
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.21
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.21
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.15
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.12
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.12
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.1
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.1
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.02
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.99
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.98
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.96
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.95
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.94
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.93
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.92
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.91
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.91
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.9
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.9
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.88
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.78
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.66
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.43
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.42
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.41
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.36
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.33
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.28
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.28
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.28
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.23
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.21
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.16
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.16
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.14
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.11
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.1
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.09
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.02
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.99
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.99
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.91
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.91
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.9
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.83
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.75
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.64
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.64
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.63
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.53
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.47
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.43
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.18
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.15
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.08
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.06
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.71
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.42
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.06
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.29
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.22
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.17
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.6
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.5
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.29
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	92.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.59
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.75
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.53
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.04
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.88
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.79
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.68
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.6
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.36
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.31
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.62
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.58
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.3
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	87.12
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.04
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.29
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.18
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.24
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.68
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.64
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.91
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	80.69

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-37  Score=204.38  Aligned_cols=166  Identities=35%  Similarity=0.682  Sum_probs=148.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|+|||||++++.+..+.+.+.++.+.+.....+......+.+.+|||||++.+..++..+++.+|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999888888999888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|+++++++..+..|+..+.....    .+.|+++++||+|+...  +.+..+++..++...+ +++++|||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~  156 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINVK  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCC----SCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccC----CcceEEEEEeecccccc--cccchhhhHHHHHHcC-CEEEEecCCCCcCHH
Confidence            9999999999999888877655433    26799999999998765  5667788888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ++|++|++.+.++
T Consensus       157 e~f~~l~~~i~ek  169 (169)
T d3raba_         157 QTFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-37  Score=204.56  Aligned_cols=163  Identities=34%  Similarity=0.709  Sum_probs=149.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||+++|.+..+...+.++.+.+.........+..+.+.+||++|+..+......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999998888899999888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|++++++++.+..|+..+.....     +.|+++|+||+|+...  +....++++.++...+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~iilVgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSSHH
T ss_pred             EeccchhhhhhcccccccccccCC-----CceEEEeeccCCcccc--eeeeehhhHHHHHHcC-CEEEEeccCCCcCHHH
Confidence            999999999999999999887654     6799999999999765  5677888899988887 7999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      +|++|++.+++
T Consensus       154 ~f~~l~~~~lq  164 (164)
T d1z2aa1         154 VFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=204.91  Aligned_cols=167  Identities=39%  Similarity=0.644  Sum_probs=150.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|.+|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            46899999999999999999999999988888999899989999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|.+++.+++.+..|+..+......    ..|+++|+||+|+...  +.+..+++..++...+ +++++|||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~ilvgnK~D~~~~--~~v~~~~~~~~~~~~~-~~~~~~SAktg~gV~  156 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNVE  156 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccc----cccEEEEEeecccccc--cchhhhHHHHHHHhCC-CEEEEEccCCCCCHH
Confidence            99999999999999998887665432    6799999999998754  5667788888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      ++|.+|++.+..+.
T Consensus       157 e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         157 KLFLDLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998887653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-37  Score=204.44  Aligned_cols=171  Identities=33%  Similarity=0.533  Sum_probs=149.8

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      ....+||+|+|.+|||||||++++.++.+...+.++. .+.....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            3456999999999999999999999999888777775 455567788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (185)
                      |+|||++++++++.+..|+..+.+....   .+.|+++|+||+|+...  +....+++..++...+ +++++|||++|.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~g  155 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAKLRLN  155 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBS
T ss_pred             eeecccccccccchhhhhhHHHHHHhcc---CCCceEEEEEeechhhc--cccchhhhhHHHHhcC-CEEEEEeCCCCcC
Confidence            9999999999999999999988765433   26799999999999764  5667788899988887 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCc
Q 029929          165 VEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       165 i~~~~~~i~~~~~~~~~~  182 (185)
                      ++++|+.|++.+.+++++
T Consensus       156 v~e~f~~l~~~i~k~~~~  173 (173)
T d2fn4a1         156 VDEAFEQLVRAVRKYQEQ  173 (173)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999877653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=204.17  Aligned_cols=169  Identities=26%  Similarity=0.438  Sum_probs=144.6

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +...+||+|+|.+|+|||||+++++.+.+...+.+|.+ +.........+..+.+.+||++|++.+...+..+++.+|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            45679999999999999999999999998888888876 44566677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcE
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ++|||++++++++.+..|+....+....    +.|+++|+||+|+.+.          ..+.+..++..+++...+.++|
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCC----CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            9999999999999876555544443322    6799999999999753          2356778889999998887899


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHhh
Q 029929          155 FETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ++|||++|.|++++|+.++++++.
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999999998863

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-37  Score=203.28  Aligned_cols=165  Identities=24%  Similarity=0.333  Sum_probs=130.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||++++.+..+... .++. .......+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            48999999999999999999998765432 3333 334456677888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      ||++++++++.+..|+..+......   .++|+++|+||+|+...  +++...++..++...+ +++++|||++|.|+++
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~v~~  152 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA  152 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHH
T ss_pred             ccccccccccccccccchhhccccc---ccceEEEeecccchhhh--cchhHHHHHHHHHhcC-CEEEEEeCCCCcCHHH
Confidence            9999999999999999988765432   36799999999999764  5677888899988887 8999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 029929          168 AFECIAKNALKNE  180 (185)
Q Consensus       168 ~~~~i~~~~~~~~  180 (185)
                      +|.+|++.+..++
T Consensus       153 ~f~~l~~~i~~~~  165 (168)
T d2gjsa1         153 LFEGVVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=202.02  Aligned_cols=165  Identities=37%  Similarity=0.644  Sum_probs=143.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|||||||++++.++.+.+.+.++.+.+........++..+.+.+||++|+..+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999989989899889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++++.+..|+..+......    ..|+++++||+|+...  +.+..+++..++...+ +++++|||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~--~~v~~~e~~~~a~~~~-~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHH
T ss_pred             EEeCCchhHHHhhhhhhhhccccccc----ccceeeeccccccccc--cccchHHHHHHHHHcC-CeEEEEecCCCcCHH
Confidence            99999999999999998877655433    5689999999999865  6678889999999887 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      ++|.+|++.+.+
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.6e-36  Score=201.18  Aligned_cols=165  Identities=32%  Similarity=0.548  Sum_probs=144.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+|+|.+|+|||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+..+..+...+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            48999999999999999999999998888888887665 45667888999999999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++++++.+..|+..+.+....   ++.|+++|+||+|+.+.  +.+..+++..++...+ +++++|||++|.|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piiivgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~e  156 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVDK  156 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCC---TTSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCC---CCCcEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHHH
Confidence            9999999999999999988776433   37899999999998654  6678889999999887 8999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 029929          168 AFECIAKNALKN  179 (185)
Q Consensus       168 ~~~~i~~~~~~~  179 (185)
                      +|.+|++.+..+
T Consensus       157 ~f~~l~~~i~~r  168 (168)
T d1u8za_         157 VFFDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCc
Confidence            999999988653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-36  Score=198.35  Aligned_cols=165  Identities=30%  Similarity=0.535  Sum_probs=147.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|||||||++++.+..+.+.+.++.+..+ ......++..+.+.+||++|++.+......+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999998888888776544 55667888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC-CHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVE  166 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~  166 (185)
                      ||++++++++.+..|+..+.+.....   +.|+++++||+|+...  +.+..+++.+++...+ ++++++||+++. |++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDPPLNVD  156 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBSHH
T ss_pred             cccccchhhhccchhhHHHHhhcccc---CccEEEEecccchhhh--ceeehhhHHHHHHHcC-CEEEEEcCCCCCcCHH
Confidence            99999999999999999987765433   6799999999999876  6678889999999888 899999999986 999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ++|..|++.+.++
T Consensus       157 ~~F~~l~~~i~~~  169 (169)
T d1x1ra1         157 KTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=198.88  Aligned_cols=172  Identities=53%  Similarity=0.984  Sum_probs=152.5

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   83 (185)
                      .+...+||+|+|.+|||||||++++..+.+...+.++.+...........+..+.+.+||++|+.........++..+|+
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            35667999999999999999999999999988888888888888888888888999999999999888889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +++++|.+++.+++.+..|+.++..........+.|+++|+||+|+.+   +....++++.++...+.+++++|||++|.
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~---~~v~~~~~~~~~~~~~~~~~~e~Sak~~~  158 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT  158 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh---ccCcHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence            999999999999999999999998887777777899999999999864   56788889999988777899999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 029929          164 NVEAAFECIAKNALK  178 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~  178 (185)
                      |++++|++|++.++.
T Consensus       159 gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         159 NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998863

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=200.69  Aligned_cols=165  Identities=32%  Similarity=0.460  Sum_probs=147.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.+||+|+|.+|+|||||++++.+..+...+.++.+.++ ...+.+++..+.+.+||++|...+..+...++..+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3458999999999999999999999998888888887765 466778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|||++++++++.+..|+..+.......   ++|+++|+||+|+...  +.+..++++.++...+ +++++|||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilvgnK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v  154 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccccc---ccceeeeccccccccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCH
Confidence            9999999999999999999887765433   6799999999999754  5677888999999887 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029929          166 EAAFECIAKNAL  177 (185)
Q Consensus       166 ~~~~~~i~~~~~  177 (185)
                      +++|..|++.+.
T Consensus       155 ~~~f~~li~~~~  166 (167)
T d1xtqa1         155 VDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=199.05  Aligned_cols=163  Identities=38%  Similarity=0.687  Sum_probs=147.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|+|||||++++.++.+...+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            46899999999999999999999999888888888888988999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......    ..|+++++||+|+...  .....+++..++...+ +++++|||++|.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Saktg~~v~  155 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGENVE  155 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccc----cceEEEEcccccchhh--cccHHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            99999999999999998887665433    6799999999998654  5667788888888877 899999999999999


Q ss_pred             HHHHHHHHHH
Q 029929          167 AAFECIAKNA  176 (185)
Q Consensus       167 ~~~~~i~~~~  176 (185)
                      ++|++|++.+
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=200.02  Aligned_cols=162  Identities=38%  Similarity=0.675  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      |||+|+|.+|||||||++++.+..+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999888999988888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      |.+++.+++.+..|+..+......    +.|+++|+||+|+...  +....+++..++...+ +++++|||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCC----CceEEEEecccchhhh--hhhhHHHHHHHHHHcC-CEEEEecCCCCcCHHHH
Confidence            999999999999999988766543    6799999999999754  5667788889988887 89999999999999999


Q ss_pred             HHHHHHHHh
Q 029929          169 FECIAKNAL  177 (185)
Q Consensus       169 ~~~i~~~~~  177 (185)
                      |++|+++++
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-36  Score=201.29  Aligned_cols=173  Identities=64%  Similarity=1.061  Sum_probs=138.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      +.+||+++|.+|||||||++++++..+.+.+.++.+...........+ ....+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            358999999999999999999999998888777777666665555443 4567899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+.++..........++|+++|+||+|+.+. .+....+++++++...+..++++|||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh-hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999988777666678999999999998753 23466778888888887789999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 029929          166 EAAFECIAKNALKNE  180 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~  180 (185)
                      +++|++|++.+.+++
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999988765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=198.96  Aligned_cols=166  Identities=31%  Similarity=0.544  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+|+|.+|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+..+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            38999999999999999999999998888888776 45567778889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++++++.+..|+..+.+.....   ..|+++|+||+|+...  +....+++..++...+ +++++|||++|.|+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGNKADLDHQ--RQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSS---CCSEEEEEECTTCTTS--CSSCHHHHHHHHHHTT-CEEEECBTTTTBSHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccC---CCCEEEEEeccchhhh--ccchHHHHHHHHHHcC-CEEEEEcCCCCcCHHH
Confidence            99999999999999998887765443   6799999999999765  6677888999998887 8999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 029929          168 AFECIAKNALKNE  180 (185)
Q Consensus       168 ~~~~i~~~~~~~~  180 (185)
                      +|.+|++.+.+.+
T Consensus       158 ~f~~l~~~i~k~~  170 (171)
T d2erya1         158 AFHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987544

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-36  Score=198.73  Aligned_cols=164  Identities=39%  Similarity=0.680  Sum_probs=149.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+|+|.+|+|||||+++|....+...+.++.+...........+....+.+||++|++.+......+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++++.+..|+..+......    +.|+++|+||+|+.+.  +.+..+++++++...+ +++++|||++|.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAININ  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCC----cceEEEecccchhccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCHH
Confidence            99999999999999998887766543    6799999999999754  6678889999999887 899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029929          167 AAFECIAKNAL  177 (185)
Q Consensus       167 ~~~~~i~~~~~  177 (185)
                      ++|.+|+++++
T Consensus       156 e~f~~l~~~i~  166 (167)
T d1z0ja1         156 ELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            99999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=200.89  Aligned_cols=169  Identities=37%  Similarity=0.660  Sum_probs=150.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|||||||++++....+.+.+.++.+.......+..++....+.+||+||++.+..++..+++.+|++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            45899999999999999999999999988888998888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|.++++++..+..|+..+......    +.|+++|+||+|+...  .+...+....++...+ ++++++||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~~~gi~  156 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSALTGENVE  156 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EEecccchhHHHHhhhhcccccccCC----ceEEEEEEecccccch--hchhhhHHHHHHHhCC-CEEEEeeCCCCcCHH
Confidence            99999999999999999988766543    7899999999998654  5666777888888776 899999999999999


Q ss_pred             HHHHHHHHHHhhcCCc
Q 029929          167 AAFECIAKNALKNEPQ  182 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~~  182 (185)
                      ++|.+|.+.+.++...
T Consensus       157 e~f~~l~~~i~~~~~~  172 (174)
T d2bmea1         157 EAFVQCARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999876443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=199.76  Aligned_cols=169  Identities=37%  Similarity=0.671  Sum_probs=151.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+|+|++|||||||++++.+..+...+.++.+.......+.+.+..+.+.+|||||++.+..++..+++.+|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45799999999999999999999999988888999988888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|+++++++..+..++..+.+...    .+.|+++|+||+|+.+.  .....++...++...+ ++++++||++|.|+
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~gi  156 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSALDSTNV  156 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTTTCTTH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhccc----CCceEEEEEeccccccc--cchhHHHHhhhhhccC-cceEEEecCcCccH
Confidence            99999999999999888887766543    27799999999999875  5667777788877766 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 029929          166 EAAFECIAKNALKNEP  181 (185)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (185)
                      +++|++|++.+.+...
T Consensus       157 ~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         157 EDAFLTMARQIKESMS  172 (194)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-37  Score=203.97  Aligned_cols=164  Identities=28%  Similarity=0.614  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||+++++++.+...+.+|.+.++....+..++..+.+.+||++|+..+...+..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999998888889999888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      ||++++++++.+..|+..+.+...     +.|+++|+||+|+.....    .++...++...+ ++++++||++|.|+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~----~~~~~~~~~~~~-~~~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNYNFEK  152 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-----SCCEEEEEECCCCSCSCC----TTTSHHHHSSCS-SEEEEEBTTTTBTTTH
T ss_pred             cccccccccchhHHHHHHHhhccC-----CCceeeecchhhhhhhhh----hhHHHHHHHHcC-CEEEEEeCCCCCCHHH
Confidence            999999999999999998877653     679999999999976422    223344555554 8999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 029929          168 AFECIAKNALKNEP  181 (185)
Q Consensus       168 ~~~~i~~~~~~~~~  181 (185)
                      +|.+|++.++.++.
T Consensus       153 ~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         153 PFLWLARKLIGDPN  166 (170)
T ss_dssp             HHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHccCCC
Confidence            99999999986543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=199.28  Aligned_cols=168  Identities=38%  Similarity=0.682  Sum_probs=146.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+|+|++|||||||++++.+..+.+.+.++.+...........+..+.+.+||++|+..+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......    +.|+++|+||+|+...  +....++...++...+ ++++++||++|.|++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~~--~~~~~~~~~~~a~~~~-~~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACNVE  154 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCC----CCeEEEEecCCchhhh--hhhHHHHHHHHHHHcC-CEEEEecCCCCCCHH
Confidence            99999999999999999888765433    7799999999998754  5667788888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 029929          167 AAFECIAKNALKNEP  181 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (185)
                      ++|.+|++.+.++.+
T Consensus       155 e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         155 EAFINTAKEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999886543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-36  Score=201.54  Aligned_cols=170  Identities=79%  Similarity=1.257  Sum_probs=153.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+|+|.+|||||||++++++..+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999988899999999888998899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++.+++.+..|+..+..+.......++|+++|+||+|+.+   +....++...++...+.+++++|||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  158 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  158 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc---cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHH
Confidence            99999999999999999998887777667889999999999875   456666777777766669999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 029929          168 AFECIAKNALKNE  180 (185)
Q Consensus       168 ~~~~i~~~~~~~~  180 (185)
                      +|++|++.+.+++
T Consensus       159 ~f~~l~~~i~~~~  171 (184)
T d1vg8a_         159 AFQTIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=197.92  Aligned_cols=166  Identities=25%  Similarity=0.453  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ..||+|+|.+|+|||||++++....+.+.+.++.+ +.........+..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888876 44456667788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEEe
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ||++++++++.+..|+.........    +.|+++|+||+|+.+.          ..+.+..++.+.++...+..++++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCC----CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999987766655554332    6899999999999754          2245677888899998887899999


Q ss_pred             eeccCCCHHHHHHHHHHHHhh
Q 029929          158 SAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ||++|.|++++|+.+++++++
T Consensus       157 SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999998763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-36  Score=198.89  Aligned_cols=166  Identities=37%  Similarity=0.684  Sum_probs=144.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+|++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            46899999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|.++++++..+..|+..+..+...    ++|+++|+||+|+.+.  +....+....+....+ .++++|||++|.|++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~----~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~i~  155 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNVE  155 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCC----CCcEEEEEeeeccccc--ccchHHHHHHhhcccC-ceEEEEecCCCcCHH
Confidence            99999999999999999988776543    6899999999999764  4455556666666555 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ++|++|++.+.+.
T Consensus       156 e~f~~l~~~i~~~  168 (175)
T d2f9la1         156 EAFKNILTEIYRI  168 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-36  Score=197.86  Aligned_cols=165  Identities=41%  Similarity=0.691  Sum_probs=149.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      -.+||+++|.+|+|||||+++|....+.+.+.++.+..............+.+.+||++|++.+...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999999998889999988888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|.+++++++.+..|+..+.+....    +.|+++|+||+|+...  +.+..+.++.++...+ +++++|||++|.|++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~SAk~g~~V~  157 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMNVN  157 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCC----CceEEeeccccccccc--ccccHHHHHHHHHhcC-CEEEEeeCCCCCCHH
Confidence            99999999999999988888665433    7899999999999765  6677888999988876 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029929          167 AAFECIAKNALK  178 (185)
Q Consensus       167 ~~~~~i~~~~~~  178 (185)
                      ++|.+|++.+++
T Consensus       158 e~f~~l~~~i~~  169 (170)
T d1r2qa_         158 EIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=196.92  Aligned_cols=165  Identities=30%  Similarity=0.540  Sum_probs=145.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+||++|+..+...+..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999888888887555 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++++.+..|+..+.+....   ++.|+++|+||+|+...  .....++...++.....+++++|||++|.|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~---~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~  155 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCC---CCCeEEEEEEecCcccc--cccchhHHHHHHHHhCCCEEEEEcCCCCcCHH
Confidence            99999999999999999988765432   37799999999999765  56677778888877766899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029929          167 AAFECIAKNAL  177 (185)
Q Consensus       167 ~~~~~i~~~~~  177 (185)
                      ++|.+|++++.
T Consensus       156 e~F~~l~~~i~  166 (167)
T d1c1ya_         156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=200.23  Aligned_cols=167  Identities=26%  Similarity=0.416  Sum_probs=144.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|.+|+|||||++++++..+...+.+|.+..+ .....+++..+.+.+||++|++.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            358999999999999999999999998888888887554 4456678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++++.+..|+..+.+....  ..++|+++|+||+|+...  +++..+++++++...+ +++++|||++|.|++
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilVgnK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~e~Sak~~~~v~  154 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  154 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             Eeecccccchhcccchhhhhhhhhcc--CCCCcEEEEeeccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHH
Confidence            99999999999999998887765332  237799999999998654  5677888999988887 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 029929          167 AAFECIAKNALKN  179 (185)
Q Consensus       167 ~~~~~i~~~~~~~  179 (185)
                      ++|..|++.+.++
T Consensus       155 e~f~~l~~~~~~~  167 (171)
T d2erxa1         155 ELFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-36  Score=199.61  Aligned_cols=167  Identities=41%  Similarity=0.713  Sum_probs=120.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.+||+++|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            35699999999999999999999998888888889998998999999998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|++++.+++.+..|+..+......    +.|+++|+||.|+...  .....+++..++...+ +++++|||++|+|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~gv  156 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAKANINV  156 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC---CCH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccC----CceEEEEEecccchhh--cccHHHHHHHHHHhcC-CEEEEEeCCCCCCH
Confidence            999999999999999998888655433    6799999999999875  4556667777777776 89999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      +++|++|++.+..+
T Consensus       157 ~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         157 ENAFFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=196.23  Aligned_cols=164  Identities=33%  Similarity=0.551  Sum_probs=143.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|.+|+|||||+++++++.+...+.++.+ +.......+++..+.+.+||++|+..+......+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999998888878776 4456677788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++++++.+..|+..+......   +++|+++|+||+|+...  +....+++..++...+ +++++|||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~i~  154 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVD  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccC---CCCCEEEEEEccchhhc--ccchHHHHHHHHHHcC-CeEEEECCCCCcCHH
Confidence            99999999999999999887765432   37899999999999765  5566778888888877 899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029929          167 AAFECIAKNAL  177 (185)
Q Consensus       167 ~~~~~i~~~~~  177 (185)
                      ++|++|++.+-
T Consensus       155 e~f~~i~~~i~  165 (167)
T d1kaoa_         155 ELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=196.25  Aligned_cols=170  Identities=24%  Similarity=0.408  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||++++....+...+.++.+.. ........+..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            4899999999999999999999999988888888744 455666788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEEe
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ||++++++|+.+..|+........    .+.|+++|+||+|+.+.          ..+.+..+++..++...+..++++|
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~----~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC  157 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEEC
T ss_pred             cccchHHHHHHHHHHHHHHHhhcC----CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEE
Confidence            999999999999765555444432    26799999999998643          2345778889999988877899999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      ||++|.|++++|+.+++.+.+..+.
T Consensus       158 SAk~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         158 SALTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             CTTTCTTHHHHHHHHHHHHTSCCST
T ss_pred             eCCCCcCHHHHHHHHHHHHhcCcCC
Confidence            9999999999999999988876543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-35  Score=193.10  Aligned_cols=164  Identities=39%  Similarity=0.707  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||+++++...+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++++++.+..|+..+......    ..|++++++|.|+..   +....++...++...+ +++++|||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~i~~~~k~d~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~e  153 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVNE  153 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccC----cceeeeecchhhhhh---hhhhHHHHHHHHHhcC-CeEEEECCCCCCCHHH
Confidence            9999999999998888877665443    568999999999875   4556778888888877 8999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 029929          168 AFECIAKNALKN  179 (185)
Q Consensus       168 ~~~~i~~~~~~~  179 (185)
                      +|++|++.+.++
T Consensus       154 ~f~~l~~~i~~k  165 (166)
T d1g16a_         154 IFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=192.38  Aligned_cols=163  Identities=32%  Similarity=0.574  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|||||||+++|+++.+...+.++.+..+... ....+..+.+.+||++|++.+......+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999998888888887666444 55677889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +|.+++.+++.+..|+..+.+....   .++|+++|+||+|+..   +....+++.+++...+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED  154 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTC---SSCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCC---CCCeEEEEeccccccc---ccccHHHHHHHHHHhC-CeEEEEcCCCCcCHHH
Confidence            9999999999999999988876533   2679999999999865   4566788888988887 8999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029929          168 AFECIAKNALK  178 (185)
Q Consensus       168 ~~~~i~~~~~~  178 (185)
                      +|++|++.+.+
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-36  Score=200.72  Aligned_cols=168  Identities=42%  Similarity=0.692  Sum_probs=144.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC----------cEEEEEEecCCChhhhcccccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------RLFTLQIWDTAGQERFQSLGVA   76 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~g~~~~~~~~~~   76 (185)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++          ..+.+.+||++|++.+..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999998888888887777666665543          3467899999999999999999


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      +++.+|++|+|||++++++++.+..|+..+..   .......|+++|+||+|+...  +++..+++..++...+ +++++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~iilv~nK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~e  157 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA---NAYCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYFE  157 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCC---CCTTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhh---hccCCCceEEEEeeeccchhh--hcchHHHHHHHHHHcC-CEEEE
Confidence            99999999999999999999999888776543   333446789999999999765  6788889999998887 89999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcC
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      +||++|.|++++|++|++.+.++.
T Consensus       158 ~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         158 TSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999988664

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=194.06  Aligned_cols=165  Identities=25%  Similarity=0.456  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|+|||||+++++.+.+.+.+.||.+..+.. ....++..+.+.+||++|+..+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999988889998777644 44567888999999999987664 455688899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC-HH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN-VE  166 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-i~  166 (185)
                      ||++++++++.+..|+.........   .+.|+++|+||+|+...  +.+..+++..++...+ ++++++||++|.| ++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~Saktg~gnV~  153 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGNIT  153 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHH
T ss_pred             cccCCccchhhhhhhcccccccccc---cCcceeeeccchhhhhh--ccCcHHHHHHHHHHhC-CeEEEEccccCCcCHH
Confidence            9999999999998877665544333   26799999999999754  6678889999999887 8999999999985 99


Q ss_pred             HHHHHHHHHHhhcC
Q 029929          167 AAFECIAKNALKNE  180 (185)
Q Consensus       167 ~~~~~i~~~~~~~~  180 (185)
                      ++|..|++.+.+++
T Consensus       154 e~F~~l~~~i~~~r  167 (168)
T d2atva1         154 EIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=192.65  Aligned_cols=168  Identities=35%  Similarity=0.625  Sum_probs=149.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|+|||||++++.+..+...+.++.+.......+.+++..+.+.+||+||++.+..++..++..+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            34899999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |+|++++.+++.+..|+..+.+...   ....|+++++||.|...   +.+..+++..++...+ ++++++||++|+|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~i~~~~nk~d~~~---~~v~~~~~~~~~~~~~-~~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EEECCCccccccchhhhhhhccccc---ccceeeEEEeecccccc---ccccHHHHHHHHHHCC-CEEEEEeCCCCCCHH
Confidence            9999999999999999888765433   33678999999999765   5677888888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 029929          167 AAFECIAKNALKNEP  181 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (185)
                      ++|++|++.+.+.+.
T Consensus       159 e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         159 CAFEELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHccCcc
Confidence            999999999987653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=194.06  Aligned_cols=169  Identities=24%  Similarity=0.398  Sum_probs=142.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+|+|.+|+|||||+++|+.+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            4589999999999999999999999988888888764 445667788899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEE
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      |||++++++++.+..|+....+...    .+.|+++|+||+|+...          ........+...++...+.+++++
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E  158 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhC----CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEE
Confidence            9999999999998764444443322    26799999999998653          123445667788888888789999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcC
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      |||++|.|++++|+.|++.++...
T Consensus       159 ~SAk~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         159 CSALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999999988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-34  Score=189.22  Aligned_cols=164  Identities=41%  Similarity=0.691  Sum_probs=136.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ..+||+++|++|||||||++++....+... ..++.+.+.....+...+..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            358999999999999999999999887544 4555677787888888998999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      +|+|.++++++..+..++.........    ..|+++|+||+|+...  ..+..+++..++...+ ++++++||++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~d~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gi  157 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGLNV  157 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCC----CceEEEEEeeechhhc--ccccHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence            999999999999998888877665432    6699999999999875  6677888889988887 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029929          166 EAAFECIAKNAL  177 (185)
Q Consensus       166 ~~~~~~i~~~~~  177 (185)
                      +++|++|++.+.
T Consensus       158 ~e~f~~l~~~i~  169 (170)
T d2g6ba1         158 DLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC
Confidence            999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=192.02  Aligned_cols=165  Identities=38%  Similarity=0.643  Sum_probs=147.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|.+|+|||||++++.++.+.+.+.++.+.++....+...+..+.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            48999999999999999999999999988899999888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      ||.+++++++.+..|+.........    ..|+++++||+|+... ..+.+..+++.+++...+ ++++++||++|.|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gV~  157 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVN  157 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EeCCcccchhhhhhhhhhhcccccc----ccceeeeecccccccccchhhhhHHHHHHHHHHcC-CEEEEecCCCCcCHH
Confidence            9999999999999988876655432    6699999999998653 346778888999998887 799999999999999


Q ss_pred             HHHHHHHHHHh
Q 029929          167 AAFECIAKNAL  177 (185)
Q Consensus       167 ~~~~~i~~~~~  177 (185)
                      ++|..|++.++
T Consensus       158 e~F~~i~~~i~  168 (170)
T d1ek0a_         158 DVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHHhc
Confidence            99999987765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-34  Score=189.91  Aligned_cols=165  Identities=24%  Similarity=0.375  Sum_probs=136.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC---hhhhcccccchhccCcE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---QERFQSLGVAFYRGADC   83 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~d~   83 (185)
                      -+||+++|.+|+|||||++++.+.... ....++.+.+.....+.+++..+.+.+||+++   ++.+  +...+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            489999999999999999999987654 34455666777778888899999999998765   4444  45667899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (185)
Q Consensus        84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (185)
                      +|+|||++++++++.+..|+..+....   ..++.|+++|+||+|+...  +++..++++.++...+ ++++++||++|.
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sak~g~  154 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQH  154 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred             eeeeecccccchhhhhhhhhhhhhhcc---ccCCceEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEeCCCCc
Confidence            999999999999999999988776432   2347899999999999765  6677888888888887 899999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 029929          164 NVEAAFECIAKNALKNE  180 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~~  180 (185)
                      |++++|++|++.+..++
T Consensus       155 ~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         155 NVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHcc
Confidence            99999999999987765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-33  Score=186.91  Aligned_cols=161  Identities=37%  Similarity=0.664  Sum_probs=141.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-cccchhccCcEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCV   85 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i   85 (185)
                      +.+||+++|.+|||||||++++....+...+.++.+.........+......+.+||++|...... .+..+++.+|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999988888888888888888899999999999999776654 4567889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc---C
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---G  162 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~  162 (185)
                      +|||++++++++.+..|+..+.+....   .+.|+++|+||+|+.+.  +++..+++.+++...+ +++++|||++   +
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~pi~lvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAkt~~~~  154 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPNDN  154 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGGG
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccC---CCCeEEEEeccccchhc--cchhHHHHHHHHHHCC-CEEEEEecccCCcC
Confidence            999999999999999999988776543   37899999999999765  5678888999998887 8999999986   5


Q ss_pred             CCHHHHHHHHH
Q 029929          163 FNVEAAFECIA  173 (185)
Q Consensus       163 ~~i~~~~~~i~  173 (185)
                      +|++++|.+|+
T Consensus       155 ~~V~e~F~~lA  165 (165)
T d1z06a1         155 DHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHC
T ss_pred             cCHHHHHHHhC
Confidence            69999998873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-34  Score=189.55  Aligned_cols=167  Identities=21%  Similarity=0.386  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      ..||+++|.+|+|||||++++....+...+.++.+. ........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999998888887754 4455667788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEEe
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ||++++++|+.+..|+.........    +.|+++|+||+|+...          ..+.+..++...++...+..+|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~  156 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  156 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             eecccCCCHHHHHHHHHHHHhccCC----cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEE
Confidence            9999999999987766554443332    6799999999998642          2356778889999998887899999


Q ss_pred             eeccCC-CHHHHHHHHHHHHhhc
Q 029929          158 SAKEGF-NVEAAFECIAKNALKN  179 (185)
Q Consensus       158 s~~~~~-~i~~~~~~i~~~~~~~  179 (185)
                      ||++|. |++++|+.+++.++++
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCCcCHHHHHHHHHHHHhcC
Confidence            999998 5999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=185.37  Aligned_cols=167  Identities=22%  Similarity=0.414  Sum_probs=138.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      ..+||+++|..|+|||||++++.+..+... .++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            359999999999999999999999987643 44444443 566778899999999999997654     36788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (185)
                      |||++++++|+.+..|+..+.... .....+.|+++|+||.|+.....+.+..+++..++.....++|++|||++|.|++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~-~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC-C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHh-hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            999999999999999988876653 3334577999999999987766677888888888777666899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 029929          167 AAFECIAKNALKNEP  181 (185)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (185)
                      ++|..+++.+...++
T Consensus       156 ~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         156 RVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998876653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=183.75  Aligned_cols=158  Identities=23%  Similarity=0.393  Sum_probs=125.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|+|||||+++|....+...+.+|.+..+..  +..  ..+.+.+||+||+..+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999888888877755543  333  347899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGF  163 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~  163 (185)
                      +|++++++++....++..+....   ..+++|+++|+||.|+.+...    ..++.+...    ....++++++||++|+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pi~lv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~  150 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCKEKD  150 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             cccccccccchhhhhhhhhhhhh---cccCCcEEEEEeccccchhhh----HHHHHHHHHHHHHHhCCCEEEEEeCcCCc
Confidence            99999999999888777665443   234789999999999976421    122222111    1123689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029929          164 NVEAAFECIAKNA  176 (185)
Q Consensus       164 ~i~~~~~~i~~~~  176 (185)
                      |++++++||++.+
T Consensus       151 gv~e~~~~l~~~~  163 (164)
T d1zd9a1         151 NIDITLQWLIQHS  163 (164)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcc
Confidence            9999999998853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=6.9e-33  Score=183.13  Aligned_cols=160  Identities=19%  Similarity=0.327  Sum_probs=121.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|++|||||||+++|.+..+. ...++.+....  .+  ....+.+.+||+||++.++..+..++..+|++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK--TL--EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE--EE--EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee--ec--cccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999887653 44555543332  23  33457889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCC
Q 029929           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGF  163 (185)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~  163 (185)
                      +|+++..++.....++......   ....+.|+++|+||+|+.+..    ..++......    ....+++++|||++|+
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVE---ERLAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eecccchhHHHHHHhhhhhhhh---cccCCCceEEEEecccccccc----CHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            9999999998887666555432   223378999999999997542    2222222211    1123679999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 029929          164 NVEAAFECIAKNALKN  179 (185)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (185)
                      |++++++||.+.+..+
T Consensus       150 gv~e~~~~l~~~i~~r  165 (165)
T d1ksha_         150 DLLPGIDWLLDDISSR  165 (165)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            9999999999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=4e-33  Score=186.13  Aligned_cols=165  Identities=22%  Similarity=0.329  Sum_probs=121.9

Q ss_pred             ccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCc
Q 029929            3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (185)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   82 (185)
                      ....+.+||+++|++|||||||++++.+..+.. ..++.+.+  ...+..  ..+.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~--~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFN--IKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEE--EEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeee--EEEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            344567999999999999999999999887642 22333322  333333  3478899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (185)
                      ++++|+|++++.++..+..++..+....   ...++|+++|+||+|+..........+...........+++++|||++|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~---~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhh---ccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            9999999999999998877776665433   2337899999999999865222111111110011122367999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029929          163 FNVEAAFECIAKN  175 (185)
Q Consensus       163 ~~i~~~~~~i~~~  175 (185)
                      +|++++++||++.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.1e-32  Score=183.52  Aligned_cols=163  Identities=18%  Similarity=0.310  Sum_probs=120.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   84 (185)
                      +.+.+||+++|.+|||||||++++....+. ...++.+....  ....  ..+.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE--TLSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE--EEEE--TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE--EEee--CCEEEEEEecccccccchhHHhhhccceeE
Confidence            356799999999999999999999876654 23444443332  2222  347889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeec
Q 029929           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAK  160 (185)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~  160 (185)
                      ++|+|++++.++.....++......   ....+.|+++|+||+|+.+..    ..+++.....    ....+++++|||+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~---~~~~~~piliv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~e~SA~  161 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQE---EELQDAALLVFANKQDQPGAL----SASEVSKELNLVELKDRSWSIVASSAI  161 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTS---STTSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEeeecccccchhHHHHHHHHHHh---hccCCcceEEEEEeecccccc----CHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence            9999999999999888777665433   233478999999999997531    2222222211    1123679999999


Q ss_pred             cCCCHHHHHHHHHHHHhhc
Q 029929          161 EGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (185)
                      +|+|++++++||.+.+.++
T Consensus       162 ~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         162 KGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=178.70  Aligned_cols=158  Identities=15%  Similarity=0.272  Sum_probs=118.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      ...+||+++|.+|||||||++++....... ..++.+...  ..  .....+.+.+||+||+..++..+..+++.+|+++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EE--EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EE--eeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            346899999999999999999998776432 233333322  22  2234478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH-----HHhcCCCcEEEeeec
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW-----CASKGNIPYFETSAK  160 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~  160 (185)
                      +|+|+++.+++..+..++.......   ...+.|+++++||+|+.+..    ...++...     +... .+++++|||+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~---~~~~~piiiv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~-~~~~~e~SA~  156 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAM----KPHEIQEKLGLTRIRDR-NWYVQPSCAT  156 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSS-CEEEEECBTT
T ss_pred             EEEecccchhHHHHHHHHHHHhhhc---ccccceeeeeeecccccccc----cHHHHHHHHHHHHHHhC-CCEEEEeeCC
Confidence            9999999999999887776655432   23367999999999997642    12222221     1112 3679999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029929          161 EGFNVEAAFECIAKNA  176 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (185)
                      +|+|++++++||.+.+
T Consensus       157 tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         157 SGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTBTHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHhc
Confidence            9999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=9.3e-30  Score=166.91  Aligned_cols=159  Identities=14%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   88 (185)
                      +||+++|++|||||||++++.++.+..........     ........+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988765443322211     1223445678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce-eecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      |.+++.++..+..++..+....   .....|+++++||.|+.+.... +........++... .+++++|||++|+|+++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~SAktg~gi~e  151 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYE  151 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSC-CEEEEECBTTTTBTHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhh---cccCceEEEEeecccccccccHHHHHHHHHHHHHhhC-CCEEEEeECCCCCCHHH
Confidence            9999999998877777665433   3336799999999998864211 11111111122222 37899999999999999


Q ss_pred             HHHHHHHHH
Q 029929          168 AFECIAKNA  176 (185)
Q Consensus       168 ~~~~i~~~~  176 (185)
                      +++||.+++
T Consensus       152 ~~~~l~~~l  160 (160)
T d1r8sa_         152 GLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.9e-27  Score=158.65  Aligned_cols=163  Identities=17%  Similarity=0.084  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh--------cccccch
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QSLGVAF   77 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~   77 (185)
                      +.-.|+|+|.+|+|||||+++|++.... ....+.++...........+  ..+.+|||||....        ......+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            3347999999999999999999987643 23334444444444444333  57889999995332        2223445


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ++.+|++++|+|++++..... ..+...+....     .+.|+++|+||+|+...     ..+....+....+...++++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-----~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~i  150 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPLV-----GKVPILLVGNKLDAAKY-----PEEAMKAYHELLPEAEPRML  150 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-----TTSCEEEEEECGGGCSS-----HHHHHHHHHHTSTTSEEEEC
T ss_pred             cccccceeeeechhhhhcccc-cchhhheeccc-----cchhhhhhhcccccccC-----HHHHHHHHHhhcccCceEEE
Confidence            688999999999988654432 33444443222     15799999999999753     12334444555566789999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcCCc
Q 029929          158 SAKEGFNVEAAFECIAKNALKNEPQ  182 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~~~  182 (185)
                      ||++|.|+++++++|.+.+++..+=
T Consensus       151 SA~~~~gi~~L~~~i~~~lpe~p~~  175 (178)
T d1wf3a1         151 SALDERQVAELKADLLALMPEGPFF  175 (178)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred             ecCCCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999998875543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=159.51  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=114.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+.+||+|+|.+|||||||++++.+..+... .++.+...  ....  .....+.+||+++++.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNV--EEIV--INNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSC--EEEE--ETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeE--EEEe--ecceEEEEeccccccccccchhhhhccceeee
Confidence            4569999999999999999999998876532 22222221  1122  23468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeecc
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE  161 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~  161 (185)
                      +++|.++..++.....+.......   ....+.|+++|+||+|+.....    ..+......    ....++++++||++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALT  160 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             eecccccccchhhhhhhhhhhhhc---ccccceEEEEEEEcccccccCc----HHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence            999999999988776555444332   2233779999999999976522    222222221    12346899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029929          162 GFNVEAAFECIAKNA  176 (185)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (185)
                      |+|++++++||.+++
T Consensus       161 g~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=3.5e-27  Score=157.37  Aligned_cols=167  Identities=19%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcc-----eeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   80 (185)
                      .+.++|+++|.+|+|||||+|+|++.........+.     +.........+......+.++|+||+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            345899999999999999999999654322111111     111111111122234678899999999999888889999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh---cCCCcEEEe
Q 029929           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFET  157 (185)
Q Consensus        81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  157 (185)
                      +|++++++|+.+....... ..+..+..       .++|+++|+||+|+...+......+..+.+...   ....+++++
T Consensus        83 ~d~~ilv~d~~~g~~~~~~-~~~~~~~~-------~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i  154 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTG-EHMLILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  154 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHH-HHHHHHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             ccccccccccccccchhhh-hhhhhhhh-------cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence            9999999999985433321 22222221       167999999999998653222222333333332   224689999


Q ss_pred             eeccCCCHHHHHHHHHHHHhhcC
Q 029929          158 SAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       158 s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ||++|+|++++++.|.+.+++.+
T Consensus       155 SA~~g~gi~eL~~~I~~~l~~~e  177 (179)
T d1wb1a4         155 SAKTGFGVDELKNLIITTLNNAE  177 (179)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHSC
T ss_pred             EccCCcCHHHHHHHHHhcCCccc
Confidence            99999999999999999988653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=151.74  Aligned_cols=164  Identities=20%  Similarity=0.333  Sum_probs=119.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|.+|||||||+++++++.+... .++.+  ........  ..+.+.+||.+|..............++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeecc--CceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999999886542 33333  22222222  34688899999999988888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee-ecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (185)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (185)
                      ++|+.+..++.....+.......   ......|+++++||.|+....... ...+....++... .++++++||++|.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~SA~~g~gv  154 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR-KWQIFKTSATKGTGL  154 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTS-CEEEEECCTTTCTTH
T ss_pred             hhhhhhcchhhhccchhhhhhhh---hccccceEEEEEeeccccccccHHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCH
Confidence            99999988887776554444332   233367899999999998642211 1111111222222 478999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 029929          166 EAAFECIAKNALKN  179 (185)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (185)
                      ++++++|++.+.++
T Consensus       155 ~e~~~~l~~~l~~k  168 (169)
T d1upta_         155 DEAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988665

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.3e-26  Score=150.86  Aligned_cols=151  Identities=23%  Similarity=0.321  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchhc
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR   79 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~   79 (185)
                      ++|+++|.+|||||||+++|++.+.. ....++.+.......+...+  ..+.++|+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987754 23334444444444444444  577889999933221        22345568


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|++++++|..+..+.+....|...+... .    .+.|+++|+||+|+........          .....+++++||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~----~~~~iilv~NK~Dl~~~~~~~~----------~~~~~~~~~iSA  144 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-P----AKLPITVVRNKADITGETLGMS----------EVNGHALIRLSA  144 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-C----TTCCEEEEEECHHHHCCCCEEE----------EETTEEEEECCT
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-c----cccceeeccchhhhhhhHHHHH----------HhCCCcEEEEEC
Confidence            899999999999877766655444433322 2    2679999999999876432211          133478999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029929          160 KEGFNVEAAFECIAKNA  176 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~  176 (185)
                      ++|.|+++++++|.+.+
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=8.3e-26  Score=150.84  Aligned_cols=161  Identities=16%  Similarity=0.047  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh----c---ccccchhccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----Q---SLGVAFYRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~---~~~~~~~~~~d   82 (185)
                      +|+++|.+|||||||+|+|++...........+......... ......+.+|||||....    .   ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee-ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999998765443334444444333333 333457889999993321    1   12234457899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929           83 CCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (185)
Q Consensus        83 ~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (185)
                      ++++++|....  +.......++.......     .++|+++|+||+|+...    ...+...+..... ..+++++||+
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~-~~~~~~iSA~  151 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-----LRRPSLVALNKVDLLEE----EAVKALADALARE-GLAVLPVSAL  151 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-----HHSCEEEEEECCTTSCH----HHHHHHHHHHHTT-TSCEEECCTT
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-----chhhhhhhhhhhhhhhH----HHHHHHHHHHHhc-CCeEEEEEcC
Confidence            99999998763  23333333333221111     14699999999999864    2233344444444 4899999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcCC
Q 029929          161 EGFNVEAAFECIAKNALKNEP  181 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~~~  181 (185)
                      +|.|++++++.|.+.+....+
T Consensus       152 tg~gid~L~~~i~~~l~~~~~  172 (180)
T d1udxa2         152 TGAGLPALKEALHALVRSTPP  172 (180)
T ss_dssp             TCTTHHHHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHhhcCC
Confidence            999999999999998875543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.4e-25  Score=147.26  Aligned_cols=153  Identities=21%  Similarity=0.306  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   89 (185)
                      ||+++|++|||||||++++.+..+. ...++.+....  .  .........+||++|...+......+...++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998865 33444443332  2  23334577899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH-----------hcCCCcEEEee
Q 029929           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-----------SKGNIPYFETS  158 (185)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s  158 (185)
                      .++..++.....++......   ....+.|+++++||.|+...    ....++.+...           ....+++++||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~~~k~d~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNI---AELKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  149 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTC---TTTTTCCEEEEEECTTSSSC----CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEB
T ss_pred             ccchhhhhhhhHHHHhhhhh---hccCCceEEEEecccccccc----CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEee
Confidence            99999988877666655433   33447799999999999753    22333322221           11235789999


Q ss_pred             eccCCCHHHHHHHHHH
Q 029929          159 AKEGFNVEAAFECIAK  174 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~  174 (185)
                      |++|+|++|+|+||.+
T Consensus       150 A~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         150 VVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTTBSHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=7.8e-26  Score=149.77  Aligned_cols=160  Identities=22%  Similarity=0.232  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccchhc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR   79 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~   79 (185)
                      .|+++|++|||||||+++|++.... ....+..+.......+  ......+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV--EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEE--EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccc--cccccccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999986643 2223333333323333  33445788999999321         1222344467


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (185)
Q Consensus        80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (185)
                      .+|+++++.|.+....... ..+...+...       ++|+++|+||+|+...    . ..+........+..+++++||
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-------~~pviiv~NK~Dl~~~----~-~~~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS-------TVDTILVANKAENLRE----F-EREVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH-------TCCEEEEEESCCSHHH----H-HHHTHHHHGGGSSCSCEECBT
T ss_pred             cCcEEEEeecccccccccc-cccccccccc-------cccccccchhhhhhhh----h-hhHHHHHHHhcCCCCeEEEec
Confidence            8999999999987544332 3333433322       6799999999998642    1 122222223344568899999


Q ss_pred             ccCCCHHHHHHHHHHHHhhcCCccc
Q 029929          160 KEGFNVEAAFECIAKNALKNEPQEE  184 (185)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~~~~  184 (185)
                      ++|.|+++++++|.+.++++..+.|
T Consensus       147 k~g~gid~L~~~i~~~l~e~~~~~e  171 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEKGLDLE  171 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999998876654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.92  E-value=9e-25  Score=147.46  Aligned_cols=166  Identities=17%  Similarity=0.181  Sum_probs=111.1

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceee--eEEEEEE-------------------ECCcEEEEE
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGAD--FLTKEVQ-------------------FEDRLFTLQ   60 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~--~~~~~~~-------------------~~~~~~~~~   60 (185)
                      ++..++|+++|+.++|||||+++|++.....   ....+.+.+  +......                   .......++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4566899999999999999999998643221   111111111  1111111                   011245789


Q ss_pred             EecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCceeecH
Q 029929           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVVSE  139 (185)
Q Consensus        61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~~~  139 (185)
                      ++||||+..|.......+..+|++++|+|+............+..+...       ++ ++++++||+|+.+........
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-------~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-------GQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-------cCccceeeeecccchhhHHHHHHH
Confidence            9999999999999888899999999999998743222222222222221       33 578889999998754333444


Q ss_pred             HHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          140 KKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      +.+.++....  ..++++++||++|+|+++|++.|.+.+|
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            4555555443  2478999999999999999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=2.8e-24  Score=143.66  Aligned_cols=159  Identities=17%  Similarity=0.258  Sum_probs=109.9

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   85 (185)
                      .+..||+++|.+|||||||+++|.+..+... .++.+....  .+.+.+  ..+.+||+.++.........+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4568999999999999999999998876532 344333332  233333  46788999999998888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----------------c
Q 029929           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----------------K  149 (185)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~  149 (185)
                      +++|.++...+............   .....+.|+++++||.|+...    .....+......                .
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~K~D~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMT---DETIANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSVSLKELNA  158 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHT---CGGGTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             eeeeccCccchHHHHHHHHHhhc---ccccCCCceEEEEeccCcccc----CCHHHHHHHHhhcccchhhhhhhHHHhhc
Confidence            99999998888876554443332   223347899999999998754    223333332221                1


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ..+++++|||++|+|++|+++||++.+
T Consensus       159 ~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         159 RPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            124689999999999999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=5.1e-25  Score=147.37  Aligned_cols=159  Identities=20%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh-----------h----hcccc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----------R----FQSLG   74 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~----~~~~~   74 (185)
                      .|+++|.+|+|||||+|+|++.+......++++.+..  .+...    .+.++||||..           .    .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998766555555544432  22222    24678999931           1    11122


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHH------HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNW------REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS  148 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (185)
                      ....+.+|++++|+|+..+.........      -..+...+..   .++|+++|+||+|+...  .+............
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~  150 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--VQEVINFLAEKFEV  150 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--HHHHHHHHHHHHTC
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhh--HHHHHHHHHHHhcc
Confidence            3345679999999999754322211100      0011111111   16799999999998754  11111111111110


Q ss_pred             ---cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929          149 ---KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       149 ---~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~  179 (185)
                         .....++++||++|.|+++++++|.+.++++
T Consensus       151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         151 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence               0113588999999999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.92  E-value=9e-25  Score=150.67  Aligned_cols=161  Identities=22%  Similarity=0.213  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEE----------------EECCcEEEEEEecCCChhhhccc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV----------------QFEDRLFTLQIWDTAGQERFQSL   73 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~D~~g~~~~~~~   73 (185)
                      .|+|+|++++|||||+++|++...........+........                .+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998653322111111111111111                12234457889999999999888


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec---------------
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS---------------  138 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---------------  138 (185)
                      ....+..+|++|+|+|+.+.-.... ...+..+...       ++|+|+++||+|+.........               
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRMY-------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             chhcccccceEEEEEecccCcccch-hHHHHHhhcC-------CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            8888999999999999987433332 2223333221       7799999999999765321110               


Q ss_pred             ---HHHHHHHHHh-----------------cCCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          139 ---EKKAKAWCAS-----------------KGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       139 ---~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                         ..........                 ....+++++||.+|.|++++++.|.....+
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence               0011111110                 112478999999999999999999877654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.8e-25  Score=147.33  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|..|+|||||+++|....+++.     +.    ....+......+.+||++|++.++..+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            358999999999999999999987665432     21    122334455788999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-------HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-------------CceeecHHHHH---
Q 029929           87 VYDVNVMKSFDNL-------NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-------------NSRVVSEKKAK---  143 (185)
Q Consensus        87 v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~---  143 (185)
                      |+|.++.+++...       ......+...+......+.|+++++||+|+...             ...........   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999987765221       112222222223344447799999999996221             00111111111   


Q ss_pred             --HHHHhc-----CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          144 --AWCASK-----GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       144 --~~~~~~-----~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                        .+....     ..+.++++||+++.|++++|+.+.+.+.+++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~n  195 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  195 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhcC
Confidence              111111     1245778999999999999999999887653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.4e-24  Score=142.10  Aligned_cols=149  Identities=23%  Similarity=0.267  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc---------ccccchh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVAFY   78 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~   78 (185)
                      +||+++|.+|+|||||+|+|++.... ....++.+.......+...+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            58999999999999999999976543 33344444444344444443  578899999932111         1122235


Q ss_pred             ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus        79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ..+|++++|+|++++...+...- ...+    .     ..++++++||+|+....    ..+++....  ....+++++|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~-~~~~----~-----~~~~i~~~~k~d~~~~~----~~~~~~~~~--~~~~~~~~vS  142 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKI-LERI----K-----NKRYLVVINKVDVVEKI----NEEEIKNKL--GTDRHMVKIS  142 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHH-HHHH----T-----TSSEEEEEEECSSCCCC----CHHHHHHHH--TCSTTEEEEE
T ss_pred             HhCCEEEEEEeCCCCcchhhhhh-hhhc----c-----cccceeeeeeccccchh----hhHHHHHHh--CCCCcEEEEE
Confidence            78999999999998776554322 2222    1     55899999999998652    233333322  2247899999


Q ss_pred             eccCCCHHHHHHHHHHH
Q 029929          159 AKEGFNVEAAFECIAKN  175 (185)
Q Consensus       159 ~~~~~~i~~~~~~i~~~  175 (185)
                      |++|+|+++++++|.+.
T Consensus       143 A~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999998763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.5e-25  Score=147.82  Aligned_cols=163  Identities=16%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc----c---ccchhccCc
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----L---GVAFYRGAD   82 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~---~~~~~~~~d   82 (185)
                      +|+++|++|||||||+|+|++........++.+.........+.+. ..+.+|||||......    .   ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999987755443444444444444444332 3678999999532211    1   122345688


Q ss_pred             EEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCcEEEeeec
Q 029929           83 CCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIPYFETSAK  160 (185)
Q Consensus        83 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~  160 (185)
                      .++++++....+....... ...............++|+++|+||+|+...      .+....+.... ...+++++||+
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEECC
Confidence            9988888765432222211 1111222223333446799999999999753      12223333333 34789999999


Q ss_pred             cCCCHHHHHHHHHHHHhhc
Q 029929          161 EGFNVEAAFECIAKNALKN  179 (185)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (185)
                      +|.|++++++.|.+.+.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         156 TREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CSSTTHHHHHHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHhhhhC
Confidence            9999999999999998654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.6e-24  Score=144.85  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=119.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|..|||||||++++....+.  +.||.+....    .+......+.+||++|++.++..+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            3589999999999999999999887763  5677776543    233455788999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--------------CceeecHHH
Q 029929           87 VYDVNVMK-----------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--------------NSRVVSEKK  141 (185)
Q Consensus        87 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~  141 (185)
                      ++|.++..           .++....|...+....    ..+.|+++++||.|+...              .......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~----~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPW----FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG----GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhh----ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            99998754           3444455555554332    237899999999997321              111122222


Q ss_pred             HHHHHH----hc-----CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          142 AKAWCA----SK-----GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       142 ~~~~~~----~~-----~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      ...+..    ..     ..+.++++||++|.|++++|+.|.+.+++++
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            232221    11     1244788999999999999999999988654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1e-23  Score=141.26  Aligned_cols=160  Identities=22%  Similarity=0.167  Sum_probs=102.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh------------ccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------QSL   73 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~   73 (185)
                      ..++|+++|.+|+|||||+++|++.... ....+..+.......+..++  ..+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            3599999999999999999999987643 12223333333333444444  46778899994322            122


Q ss_pred             ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH----Hhc
Q 029929           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC----ASK  149 (185)
Q Consensus        74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~  149 (185)
                      ....++.+|++++|+|++.+..... ..+...+...       +.|+++|+||+|+.....  ....+..+..    ...
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~-------~~~~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~  154 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR-------GRASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFI  154 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT-------TCEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGGG
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc-------CCceeeeccchhhhcchh--hhhhhHHHHHHHHhccc
Confidence            3344678999999999987543322 2333333221       679999999999876532  2222222222    223


Q ss_pred             CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          150 GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      +..+++++||++|.|+++++++|.+.+..
T Consensus       155 ~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         155 DYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999877654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=7.2e-24  Score=143.04  Aligned_cols=158  Identities=20%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh-------------hhhcccc
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------------ERFQSLG   74 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------------~~~~~~~   74 (185)
                      ..+|+|+|.+|||||||+|+|++...........+.+...........   ..+.|++|.             ..+....
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhhh
Confidence            358999999999999999999986543222222222222222333322   234455551             1111122


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (185)
                      ......+|++++++|++++..... ..++..+...       ++|+++|+||+|+..........+..++........++
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~-------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY-------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             hccccchhhhhhhhhccccccccc-cccccccccc-------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence            234456799999999986533222 2333333221       67999999999987643222233333333333455789


Q ss_pred             EEeeeccCCCHHHHHHHHHHHH
Q 029929          155 FETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      +++||++|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=1.6e-23  Score=142.31  Aligned_cols=167  Identities=17%  Similarity=0.172  Sum_probs=107.2

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC---ccCcce--eeeEEEEEEE------------------------CCcE
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---YKATIG--ADFLTKEVQF------------------------EDRL   56 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~~~   56 (185)
                      +..++|+++|+.++|||||+++|++......   ......  ..........                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4558999999999999999999986332110   000000  0000111000                        0123


Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      ..+.++|+||+.+|.......+..+|++|+|+|+.+.-........+...... .     ..|+|+++||+|+.......
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~-----i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-----VKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T-----CCCEEEEEECGGGSCHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C-----CceeeeccccCCCccchHHH
Confidence            46889999999999988888899999999999998742111112222222211 1     23789999999998753333


Q ss_pred             ecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ........+....  ..++++++||++|.|++++++.|...++.
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            3333344444332  24789999999999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.6e-24  Score=146.68  Aligned_cols=167  Identities=16%  Similarity=0.205  Sum_probs=107.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   86 (185)
                      +.+||+++|.+|||||||++++.   +...+.||.|....    .+......+.+||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~----~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE----EEEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE----EEeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999993   33455677774433    233345788999999999999999999999999999


Q ss_pred             EEECCChhhH-------HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--------------CceeecHHHHHHH
Q 029929           87 VYDVNVMKSF-------DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--------------NSRVVSEKKAKAW  145 (185)
Q Consensus        87 v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~~~~~  145 (185)
                      ++|.++..++       .....+...+...+......+.|+++++||+|+...              .......+...++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            9999874432       112233333333334444457899999999997421              0011112222222


Q ss_pred             H----Hhc------CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          146 C----ASK------GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       146 ~----~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                      .    ...      ..+.++++||+++.+++++|+.+.+.+.+++
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            2    211      1234567999999999999999988887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.90  E-value=6.4e-24  Score=142.62  Aligned_cols=162  Identities=16%  Similarity=0.086  Sum_probs=110.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC----------------CCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR----------------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ..++|+++|+.++|||||+++|+..                ........+.  +.......+......++++||||+.+|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgi--Ti~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI--TINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE--EEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCc--cCCcceEEEEeceeeEEeecCcchHHH
Confidence            3589999999999999999999741                1111222233  333344444555568889999999999


Q ss_pred             cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce-eecHHHHHHHHHhc
Q 029929           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKKAKAWCASK  149 (185)
Q Consensus        71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~  149 (185)
                      .......+..+|++++|+|+.+...... ...+.......      ..|+|+++||+|+.....+ +....+++.+....
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~------~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~  152 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG------VEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT------CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc------CCcEEEEEecccccccHHHHHHHHHHHHHHHHHh
Confidence            9988888999999999999997433322 22222222211      3378899999999764221 22233455555544


Q ss_pred             C----CCcEEEeeeccC----------CCHHHHHHHHHHHHh
Q 029929          150 G----NIPYFETSAKEG----------FNVEAAFECIAKNAL  177 (185)
Q Consensus       150 ~----~~~~~~~s~~~~----------~~i~~~~~~i~~~~~  177 (185)
                      +    .++++++|+++|          +++.++++.|.+.++
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            3    378999999998          588999988877665

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2e-22  Score=137.12  Aligned_cols=120  Identities=20%  Similarity=0.295  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-ccccchhccCcEEEEEE
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVLVY   88 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~v~   88 (185)
                      +|+++|++|||||||+++|.+..+... .++.+.+.....+. ......+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999887654 35554444333322 3456789999999998775 45677789999999999


Q ss_pred             ECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           89 DVNVMKSF-DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        89 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |+++..++ .....++..+....... ..++|++||+||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~-~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMAL-KNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTS-TTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHh-hcCCcEEEEEECcccCCC
Confidence            99986553 34344444333222111 125799999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.8e-22  Score=132.15  Aligned_cols=164  Identities=16%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVA   76 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~   76 (185)
                      +.-.|+++|.+|+|||||+|+|++.+..... .++.+........... . ..+..+|++|...         .......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-A-YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-T-EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC-C-ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4456899999999999999999987754322 2222222222222222 2 3556678887221         1122233


Q ss_pred             hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
                      ....+++++++.|........  ..+...+..    .   ..|.++++||.|....  ...............+..++++
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~----~---~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD--EMVLNKLRE----G---KAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVP  150 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH--HHHHHHHHS----S---SSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEE
T ss_pred             chhhcceeEEEEecCccchhH--HHHHHHhhh----c---cCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEEE
Confidence            345678888899887633222  222222221    1   5589999999998765  3333445555556667689999


Q ss_pred             eeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929          157 TSAKEGFNVEAAFECIAKNALKNEPQE  183 (185)
Q Consensus       157 ~s~~~~~~i~~~~~~i~~~~~~~~~~~  183 (185)
                      +||++|.|+++++++|.+.+++..+-+
T Consensus       151 vSA~~g~gi~~L~~~i~~~lpe~~~~y  177 (179)
T d1egaa1         151 ISAETGLNVDTIAAIVRKHLPEATHHF  177 (179)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCCBCCCSS
T ss_pred             EeCcCCCCHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999988776543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=7.1e-22  Score=133.62  Aligned_cols=145  Identities=16%  Similarity=0.064  Sum_probs=94.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC------CCC-----------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR------KFS-----------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      .+++|+++|+.++|||||+++|+..      ...           .......+.+.....+.  ..+..++++||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~--~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE--TAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--CSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE--eCCeEEEEEeCCCchh
Confidence            3589999999999999999999632      000           01111333344444444  4446778999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCA  147 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~  147 (185)
                      |.......+..+|++|+|+|+.+.-.....+ .+......       ++| +++++||+|+.+... .+...+++..+..
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~-------gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~  151 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  151 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc-------CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754443322 22222221       555 677899999976421 1223344555554


Q ss_pred             hcC----CCcEEEeeecc
Q 029929          148 SKG----NIPYFETSAKE  161 (185)
Q Consensus       148 ~~~----~~~~~~~s~~~  161 (185)
                      ..+    ..++++.|+..
T Consensus       152 ~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         152 QYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HTTSCTTTSCEEECCHHH
T ss_pred             hcCCCcccceeeeeechh
Confidence            432    36789988863

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.86  E-value=3.3e-21  Score=131.62  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------ccCcceeeeEEEEEEE
Q 029929            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------------------YKATIGADFLTKEVQF   52 (185)
Q Consensus         4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~   52 (185)
                      .+...+||+++|+.++|||||+.+|+.......                               .....+.+.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            345679999999999999999999963211000                               0000111222222223


Q ss_pred             CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCC
Q 029929           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDG  131 (185)
Q Consensus        53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  131 (185)
                      ......+.++|+||+..|..........+|++|+|+|+.........+.+ .....    .   ++| +|+++||+|+.+
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~----~---gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASL----L---GIKHIVVAINKMDLNG  156 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHH----T---TCCEEEEEEECTTTTT
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHH----c---CCCEEEEEEEcccccc
Confidence            33456788999999999999999999999999999999874333322221 21111    1   444 788999999987


Q ss_pred             CCce--eecHHHHHHHHHhcC----CCcEEEeeeccCCCHH
Q 029929          132 GNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVE  166 (185)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~  166 (185)
                      ....  ....+++..+....+    .++|+++||.+|+|+.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            5322  223334555555543    3578999999999873

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.4e-21  Score=132.86  Aligned_cols=165  Identities=14%  Similarity=0.113  Sum_probs=111.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   87 (185)
                      .+||+++|..|||||||++++....+    .||.|...  ..+.++  .+.+.+||++|+..++..+..++..+++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceEEE
Confidence            48999999999999999999976543    35666433  333344  46889999999999999999999999999999


Q ss_pred             EECCChhhH-------HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--------------------------
Q 029929           88 YDVNVMKSF-------DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--------------------------  134 (185)
Q Consensus        88 ~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------------------  134 (185)
                      +|.++.+.+       ..+......+...+......++|+++++||+|+.....                          
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            999864321       11222233333333444445789999999999843200                          


Q ss_pred             --eeecHHHHHH-----HHHhc-------CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929          135 --RVVSEKKAKA-----WCASK-------GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (185)
Q Consensus       135 --~~~~~~~~~~-----~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~  180 (185)
                        .......+..     +....       ..+-++++||.++.+++.+|+.+.+.|++++
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence              0001122222     21111       1123567999999999999999888887653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=7.3e-20  Score=127.98  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC------------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ..+|+++|+.++|||||+.+++.....                  .......+.......+.  ..+.+++++||||+.+
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~--~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF--WKDHRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE--ETTEEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec--cCCeEEEEecCCchhh
Confidence            358999999999999999998632111                  11111222222233333  3456889999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      |.......++.+|++|+|+|+.+.-......-| ....    ..   ++|.++++||+|....
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~----~~---~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE----KY---KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH----TT---TCCEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH----Hc---CCCEEEEEeccccccc
Confidence            999999999999999999999985444442222 3332    22   7899999999998654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.2e-20  Score=128.23  Aligned_cols=121  Identities=15%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccch----hccCc
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----YRGAD   82 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d   82 (185)
                      +...|+++|++|||||||+|+|++..+.+    +++.+.....  +...+..+.+||+||+......+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            45799999999999999999999987543    3333332333  33444567899999987665554443    35568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929           83 CCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (185)
Q Consensus        83 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  133 (185)
                      .+++++|+.+ ..+++....++..+..........++|+++|+||+|+.+..
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8999999765 56666666665554443333334478999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.5e-19  Score=119.49  Aligned_cols=164  Identities=16%  Similarity=0.058  Sum_probs=86.7

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-------ccc---c
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSL---G   74 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~---~   74 (185)
                      +...++|+++|.+|+|||||+|+|++.+.........+................+...+.++....       ...   .
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            355699999999999999999999987654332222222222222222222223322222221111       111   1


Q ss_pred             cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCc
Q 029929           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP  153 (185)
Q Consensus        75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~  153 (185)
                      .......+.++.+.+......... ..+...+...       ..++++++||+|+..........+.+.+..... +..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS-------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhhc-------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            111233445566666665433332 2233333221       558999999999987533333333334333333 3468


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHH
Q 029929          154 YFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       154 ~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      ++++||++|.|++++++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999987653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.80  E-value=1.2e-19  Score=125.74  Aligned_cols=156  Identities=17%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CccCcceeeeEEEEEEECCcEE
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-----------------------------QYKATIGADFLTKEVQFEDRLF   57 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   57 (185)
                      ..++|+++|+.++|||||+.+|+......                             ......+.........+.....
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            46799999999999999999985311100                             0000011111111122223446


Q ss_pred             EEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCC
Q 029929           58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD------NLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD  130 (185)
Q Consensus        58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~  130 (185)
                      .+.++|+||+..|..........+|++++|+|+.+...-.      .....+.... ..      ++| +++++||+|+.
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~------~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQ------GINHLVVVINKMDEP  175 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HT------TCSSEEEEEECTTST
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-Hc------CCCeEEEEEEcCCCC
Confidence            7899999999999999999999999999999998632110      1111111111 11      444 78999999997


Q ss_pred             CCCceeec----HHHHHHHHHhcC------CCcEEEeeeccCCCHHHHH
Q 029929          131 GGNSRVVS----EKKAKAWCASKG------NIPYFETSAKEGFNVEAAF  169 (185)
Q Consensus       131 ~~~~~~~~----~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~  169 (185)
                      .....+..    .+++..+.....      .++++++||++|+|+.+++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            54322222    223333333221      2579999999999997754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.79  E-value=4.5e-19  Score=123.67  Aligned_cols=113  Identities=17%  Similarity=0.191  Sum_probs=79.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------ccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   69 (185)
                      ..+|+++|+.++|||||+.++........                  .....+.......+..  .+.+++++||||+.+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~--~~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc--cccceeEEccCchhh
Confidence            35799999999999999999853211100                  0112233333333433  346788999999999


Q ss_pred             hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      |.......++.+|++|+|+|+.+.-.......| ....+.       ++|.++++||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~-------~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL-------GLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT-------TCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc-------cccccccccccccc
Confidence            999999999999999999999975544443333 333222       67999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.4e-19  Score=124.72  Aligned_cols=151  Identities=16%  Similarity=0.202  Sum_probs=98.0

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (185)
                      ...++|+++|+.++|||||+.+|+....                               ......+.+.+.....+..  
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--   81 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--   81 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc--
Confidence            3458999999999999999999853110                               0011223334443444443  


Q ss_pred             cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhH------HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 029929           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF------DNLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (185)
Q Consensus        55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~  127 (185)
                      ..++++++|+|||.+|...+...+..+|++|+|+|+.....-      ......+....    ..   ++| +|+++||+
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~----~~---gv~~iiv~iNKm  154 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF----TL---GVRQLIVAVNKM  154 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH----HT---TCCEEEEEEECG
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH----Hc---CCCeEEEEEECC
Confidence            447889999999999999999999999999999999853210      01111111111    11   455 78899999


Q ss_pred             CCCCCCce--eecHHHHHHHHHhcC----CCcEEEeeeccCCCH
Q 029929          128 DVDGGNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNV  165 (185)
Q Consensus       128 Dl~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i  165 (185)
                      |+.+.+..  ....+++..+....+    .++++++|+..|.|+
T Consensus       155 D~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni  198 (239)
T d1f60a3         155 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM  198 (239)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence            99875321  222334444544433    367899999999876

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=1.1e-19  Score=124.71  Aligned_cols=152  Identities=17%  Similarity=0.197  Sum_probs=93.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECCcE
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFEDRL   56 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (185)
                      .++|+++|+.++|||||+.+|+....                               ......  +.+.......+....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFETKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcC--CccccceEEEEecCC
Confidence            58999999999999999998853110                               001111  122222333344455


Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD------NLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  130 (185)
                      +.++++|||||..|...+...++.+|++|+|+|+.+.....      .....+. +.....     ..++|+++||+|+.
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~-----~~~iIv~iNK~D~~  154 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMG-----LDQLIVAVNKMDLT  154 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTT-----CTTCEEEEECGGGS
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHhC-----CCceEEEEEcccCC
Confidence            78999999999999999999999999999999999742111      1111111 111111     22688899999997


Q ss_pred             CCCceeecHH----HHHHHHHhc----CCCcEEEeeeccCCCHHH
Q 029929          131 GGNSRVVSEK----KAKAWCASK----GNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       131 ~~~~~~~~~~----~~~~~~~~~----~~~~~~~~s~~~~~~i~~  167 (185)
                      .........+    .+..+....    ...+++++||..|.|+.+
T Consensus       155 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         155 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            6432322222    233333333    246789999999998743

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.6e-17  Score=120.71  Aligned_cols=163  Identities=13%  Similarity=0.170  Sum_probs=93.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc---cCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-----ccch
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----GVAF   77 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~   77 (185)
                      ..+++|+|+|.+|+|||||+|+|++.......   .+..+.+.....+...+ ...+.+|||||.......     ....
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhh
Confidence            34699999999999999999999986543211   11111122222333222 235789999995433222     2223


Q ss_pred             hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---------ceeecHHHHHH----
Q 029929           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---------SRVVSEKKAKA----  144 (185)
Q Consensus        78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---------~~~~~~~~~~~----  144 (185)
                      +..+|+++++.|..-.+.-   ..+...+.+.       ++|+++|+||+|.....         ..+...+.++.    
T Consensus       133 ~~~~d~~l~~~~~~~~~~d---~~l~~~l~~~-------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKND---IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             GGGCSEEEEEESSCCCHHH---HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHHH---HHHHHHHHHc-------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHH
Confidence            4678888888775433222   2233333322       67999999999963110         01111222222    


Q ss_pred             HHHh--cCCCcEEEeeecc--CCCHHHHHHHHHHHHhhc
Q 029929          145 WCAS--KGNIPYFETSAKE--GFNVEAAFECIAKNALKN  179 (185)
Q Consensus       145 ~~~~--~~~~~~~~~s~~~--~~~i~~~~~~i~~~~~~~  179 (185)
                      ....  ....+++.+|+.+  ..|+.++.+.+.+.++..
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            1222  2234688888765  458999999998877654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.3e-17  Score=115.66  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEE--------------CCc
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQF--------------EDR   55 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~   55 (185)
                      ....+|+|+|+.++|||||+.+|.....                ........+.......+.+              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            4445799999999999999999962110                1111122222222222221              335


Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  131 (185)
                      .+.++++||||+.+|.......++-+|++++|+|+.+.-......-|..... .       +.|+++++||+|...
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~-~-------~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-E-------RIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-T-------TCEEEEEEECHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH-c-------CCCeEEEEECccccc
Confidence            6789999999999999999999999999999999998655544333333222 1       779999999999743

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.64  E-value=2.4e-15  Score=104.71  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------cccc--
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGV--   75 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~--   75 (185)
                      ...++|+++|.+|+|||||+|++++..... ...+..+...........+  ..+.++||||.....       ....  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            456999999999999999999999877543 2233333444444444544  578899999932211       1111  


Q ss_pred             chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus        76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      ......|++++|++.+...--..-...+..+...+...-  -.++++|+||+|....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI--WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG--GGGEEEEEECCSCCCG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh--hhCEEEEEECcccCCc
Confidence            112457899999988763211211233334443332110  2378999999998764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.61  E-value=1.2e-16  Score=110.62  Aligned_cols=114  Identities=13%  Similarity=-0.044  Sum_probs=67.6

Q ss_pred             EEEEEecCCChhhhcccccchh-----ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929           57 FTLQIWDTAGQERFQSLGVAFY-----RGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~-----~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  128 (185)
                      ..+.++|+||+...........     ...+.+++++|+..   +...............+.      ..|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGG
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeeccc
Confidence            3477889999876544332221     24568899999864   333222211111111111      568999999999


Q ss_pred             CCCCCceeecHH---------------------HHHH----HHHhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929          129 VDGGNSRVVSEK---------------------KAKA----WCASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (185)
Q Consensus       129 l~~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~  176 (185)
                      +...........                     ....    .....+..+++++||++|+|++++++.|.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         169 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            987422111100                     0000    01123457899999999999999999998754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.4e-14  Score=103.75  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             EEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceee
Q 029929           58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV  137 (185)
Q Consensus        58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  137 (185)
                      .+.+++|.|.....   ......+|.+++|.++...+....+.   ..+.+.         +-++|+||+|+........
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k---~gi~e~---------aDi~VvNKaD~~~~~~~~~  212 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIK---KGLMEV---------ADLIVINKDDGDNHTNVAI  212 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCC---HHHHHH---------CSEEEECCCCTTCHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhc---hhhhcc---------ccEEEEEeecccchHHHHH
Confidence            34556666632211   12446699999999876544333322   222222         4489999999886432222


Q ss_pred             cHHHHHHHHHhc------CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          138 SEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       138 ~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ...+........      +..+++.+||.+|+|++++++.|.+...
T Consensus       213 ~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         213 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            233333332211      2357999999999999999999987543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=4.3e-13  Score=95.07  Aligned_cols=87  Identities=20%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~   69 (185)
                      +..++|.++|.|+||||||++++++... .....|+++.++....+.+.+.               ...+.++|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4568999999999999999999998764 3455677777766666665542               24678899999322


Q ss_pred             h-------cccccchhccCcEEEEEEECCC
Q 029929           70 F-------QSLGVAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        70 ~-------~~~~~~~~~~~d~~i~v~d~~~   92 (185)
                      -       .......++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       1233445588999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.48  E-value=1e-13  Score=99.03  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  136 (185)
                      +.+.+++|.|.......   ....+|..++|..+...+......   ..+.         ..+=++|+||+|+.+...  
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k---~gil---------E~aDi~vvNKaD~~~~~~--  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK---KGIF---------ELADMIAVNKADDGDGER--  206 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC---TTHH---------HHCSEEEEECCSTTCCHH--
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhh---hhHh---------hhhheeeEeccccccchH--
Confidence            56778888884332222   334599999999998654443221   2222         124599999999876421  


Q ss_pred             ecHHHHHHHHHh---------cCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929          137 VSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (185)
Q Consensus       137 ~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~  177 (185)
                      ........+...         .+..+++.+||.++.|+++++++|.+...
T Consensus       207 ~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         207 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            111111111111         12357999999999999999999987654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=9.2e-13  Score=92.57  Aligned_cols=84  Identities=24%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCCh----h
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQ----E   68 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~----~   68 (185)
                      .++|.++|.|+||||||++++++........|+++.++....+.+.+.               ...+.++|.||.    .
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999998877666677776665555555432               135788999993    2


Q ss_pred             hhccc---ccchhccCcEEEEEEECC
Q 029929           69 RFQSL---GVAFYRGADCCVLVYDVN   91 (185)
Q Consensus        69 ~~~~~---~~~~~~~~d~~i~v~d~~   91 (185)
                      .-..+   .-..++.+|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            22223   334457899999999873

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.5e-11  Score=87.19  Aligned_cols=118  Identities=17%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEE-----------------------------------
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQ-----------------------------------   51 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------   51 (185)
                      ..+|+|+|..++|||||+|+|++.++ +....+++..-.......                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            36899999999999999999999886 444444332111111110                                   


Q ss_pred             -------------EC-CcEEEEEEecCCChhh-------------hcccccchhccCcE-EEEEEECCChhhHHHHHHHH
Q 029929           52 -------------FE-DRLFTLQIWDTAGQER-------------FQSLGVAFYRGADC-CVLVYDVNVMKSFDNLNNWR  103 (185)
Q Consensus        52 -------------~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~~~  103 (185)
                                   +. .....++++|+||...             ...+...|+...+. +++|.++...-+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                         00 0012378999999321             12334556666765 45566666544444333444


Q ss_pred             HHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929          104 EEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (185)
Q Consensus       104 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  132 (185)
                      +.+    ...   ..++++|+||+|....
T Consensus       186 ~~~----~~~---~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEV----DPQ---GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHH----CTT---CSSEEEEEECGGGSCT
T ss_pred             HHh----CcC---CCceeeEEeccccccc
Confidence            433    222   4589999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=5.3e-12  Score=90.35  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEE----------------------ECCcEEEEEEecCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ----------------------FEDRLFTLQIWDTAG   66 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~D~~g   66 (185)
                      ++|.++|.||||||||+|+|++........|+++.++......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999999887766667666554322211                      011235789999999


Q ss_pred             hhh-------hcccccchhccCcEEEEEEECCC
Q 029929           67 QER-------FQSLGVAFYRGADCCVLVYDVNV   92 (185)
Q Consensus        67 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   92 (185)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321       12223334578999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.22  E-value=6e-11  Score=84.27  Aligned_cols=27  Identities=30%  Similarity=0.666  Sum_probs=24.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRKFS   34 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~~~   34 (185)
                      ..+|+|+|..++|||||+|+|++.++.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            358999999999999999999998863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=4.9e-09  Score=73.01  Aligned_cols=57  Identities=23%  Similarity=0.418  Sum_probs=35.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ...++|+|+|.||+|||||+|+|.+.+.. ....|+.+.+.  ..+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCc
Confidence            35689999999999999999999987753 33444444332  2233322   4678899993

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=3.3e-08  Score=65.89  Aligned_cols=91  Identities=20%  Similarity=0.123  Sum_probs=51.2

Q ss_pred             EEEEEecCCChhhhc----ccccchh---c-----cCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           57 FTLQIWDTAGQERFQ----SLGVAFY---R-----GADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~----~~~~~~~---~-----~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      +.+.++||+|.....    .....+.   .     ..+-.++|+|++. .+....+..++..+          + +--++
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  162 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV----------N-VTGII  162 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS----------C-CCEEE
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc----------C-CceEE
Confidence            467899999922111    1111111   1     2467899999975 33333333333322          1 34688


Q ss_pred             EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +||.|-...      .-.+.......+ .|+.+++  +|+++++
T Consensus       163 ~TKlDe~~~------~G~~l~~~~~~~-~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         163 LTKLDGTAK------GGITLAIARELG-IPIKFIG--VGEKAED  197 (213)
T ss_dssp             EECGGGCSC------TTHHHHHHHHHC-CCEEEEE--CSSSGGG
T ss_pred             EecccCCCc------ccHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence            999997543      223444455555 7888887  5666644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=2.3e-07  Score=62.10  Aligned_cols=85  Identities=22%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             hhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-cCCCcE
Q 029929           77 FYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-KGNIPY  154 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~  154 (185)
                      ...+.|.+++|+++.+|+ +...+.+++-.....       ++|.+||+||+||.+..    ..+....+... ....++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~-------~i~pvIvlnK~DL~~~~----~~~~~~~~~~~~~~~~~v   75 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-------ELETVMVINKMDLYDED----DLRKVRELEEIYSGLYPI   75 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTTSCE
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEeCcccCCHH----HHHHHHHhhcccccceeE
Confidence            457899999999988764 334445555544322       77999999999998631    22233333332 233789


Q ss_pred             EEeeeccCCCHHHHHHHH
Q 029929          155 FETSAKEGFNVEAAFECI  172 (185)
Q Consensus       155 ~~~s~~~~~~i~~~~~~i  172 (185)
                      +.+|++++.|++++..++
T Consensus        76 ~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          76 VKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeccccchhHhhHHHHh
Confidence            999999999999998876

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=2.6e-08  Score=66.97  Aligned_cols=88  Identities=14%  Similarity=0.042  Sum_probs=60.3

Q ss_pred             hhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929           77 FYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (185)
Q Consensus        77 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (185)
                      ...+.|.+++|+++.+|+ +...+.+++-...    ..   +++.+||+||+||.+........+.........+ ++++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~   78 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----AN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVY   78 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEE
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----Hc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-ccce
Confidence            457899999999998764 4444555555443    22   7799999999999875222222223333344455 8999


Q ss_pred             EeeeccCCCHHHHHHHH
Q 029929          156 ETSAKEGFNVEAAFECI  172 (185)
Q Consensus       156 ~~s~~~~~~i~~~~~~i  172 (185)
                      .+|+.++.|++++..+|
T Consensus        79 ~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          79 LTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ECCHHHHTTCTTTGGGG
T ss_pred             eeecCChhHHHHHHHhh
Confidence            99999999998887665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=3.7e-08  Score=65.97  Aligned_cols=58  Identities=22%  Similarity=0.182  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-C-----CccCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRKFS-N-----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   70 (185)
                      ..+++|++|+|||||+|+|...... .     ....+..++.....+.+++.+   .++||||-..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence            5689999999999999999865321 1     111122222333344454443   37799995443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.52  E-value=9e-08  Score=63.48  Aligned_cols=92  Identities=15%  Similarity=0.078  Sum_probs=52.2

Q ss_pred             EEEEEecCCChhhhcc----cccchh--------ccCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           57 FTLQIWDTAGQERFQS----LGVAFY--------RGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~----~~~~~~--------~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      +.+.++||+|......    ......        ...+-+++|+|++. .+....+..++..+          + +--++
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  157 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----------G-LTGVI  157 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----------C-CSEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----------C-CceEE
Confidence            4678999999332221    111111        24577899999976 44444444444443          2 33678


Q ss_pred             EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (185)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  168 (185)
                      +||.|-....      -.+.......+ .|+.+++  +|++++++
T Consensus       158 ~TKlDet~~~------G~~l~~~~~~~-~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         158 VTKLDGTAKG------GVLIPIVRTLK-VPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             EECTTSSCCC------TTHHHHHHHHC-CCEEEEE--CSSSTTCE
T ss_pred             EeccCCCCCc------cHHHHHHHHHC-CCEEEEe--CCCChHhC
Confidence            9999976532      22333344454 7887777  35555443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=1.2e-07  Score=65.89  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (185)
Q Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (185)
                      .....+..+|++|+|+|+.+|.+...  ..+..+   ..     ++|.++|+||+|+.+.   . ..+...+.....+ .
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~-----~Kp~IlVlNK~DLv~~---~-~~~~w~~~f~~~~-~   72 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LK-----NKPRIMLLNKADKADA---A-VTQQWKEHFENQG-I   72 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CS-----SSCEEEEEECGGGSCH---H-HHHHHHHHHHTTT-C
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---Hc-----CCCeEEEEECccCCch---H-HHHHHHHHHHhcC-C
Confidence            34557889999999999998766543  222222   22     5699999999999864   1 2223333333333 6


Q ss_pred             cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929          153 PYFETSAKEGFNVEAAFECIAKNALK  178 (185)
Q Consensus       153 ~~~~~s~~~~~~i~~~~~~i~~~~~~  178 (185)
                      ..+.+|+.++.+..++...+.+.+.+
T Consensus        73 ~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          73 RSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccceeecccCCCccccchhhhhhhhh
Confidence            88999999999998888877766554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.2e-06  Score=57.51  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .=.+|.|.-|||||||++++....
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            346788999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.2e-07  Score=60.85  Aligned_cols=91  Identities=16%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             EEEEEecCCChhhhc----ccccc---hhc-----cCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929           57 FTLQIWDTAGQERFQ----SLGVA---FYR-----GADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~----~~~~~---~~~-----~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv  123 (185)
                      +.+.++||+|.....    .....   ..+     ..+-.++|+|+.. .+....+..++..+          + +--++
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  160 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----------G-LTGIT  160 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----------C-CCEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----------C-CceEE
Confidence            467899999932111    11111   122     2468899999975 33344333333322          1 34688


Q ss_pred             EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      +||.|-...      .-.+.......+ .|+.+++  .|+++++
T Consensus       161 lTKlDe~~~------~G~~l~~~~~~~-~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         161 LTKLDGTAK------GGVIFSVADQFG-IPIRYIG--VGERIED  195 (211)
T ss_dssp             EECCTTCTT------TTHHHHHHHHHC-CCEEEEE--CSSSGGG
T ss_pred             EeecCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence            999997653      233444445555 7888887  6666644

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.38  E-value=1.7e-07  Score=62.29  Aligned_cols=91  Identities=19%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             EEEEEecCCChhhhc------ccccch--hccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929           57 FTLQIWDTAGQERFQ------SLGVAF--YRGADCCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~------~~~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  127 (185)
                      +.+.++||+|.....      ......  .-..+-+++|++++.. +..+....++..+          + +--+++||.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI~TKl  163 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS----------K-IGTIIITKM  163 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC----------T-TEEEEEECT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc----------C-cceEEEecc
Confidence            467899999943221      111111  1246788999998763 3333333332221          2 235779999


Q ss_pred             CCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (185)
Q Consensus       128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (185)
                      |-...      .-.+.......+ .|+.+++  .|+++++
T Consensus       164 Det~~------~G~~l~~~~~~~-lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         164 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             TSCSC------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             cCCCc------ccHHHHHHHHHC-cCEEEEe--CCCCccc
Confidence            97643      445555555555 8888888  5776654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=7.8e-08  Score=64.59  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+++|++|+|||||+|+|...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            5679999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.23  E-value=7.5e-07  Score=59.01  Aligned_cols=84  Identities=20%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             EEEEEecCCChhhhcc----cccch--hccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929           57 FTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  129 (185)
                      +.+.++||+|......    .....  ....+-+++|.|+.... ..+.+..+.+.+    .       .-=+++||.|-
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~-------~~~~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G-------VTGLVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C-------CCEEEEECGGG
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C-------CCeeEEeecCc
Confidence            4678999999322211    11111  23578899999997643 233223332222    2       23588999996


Q ss_pred             CCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929          130 DGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (185)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (185)
                      ...      .-.+.......+ .|+.+++
T Consensus       162 ~~~------~G~~l~~~~~~~-~Pi~~i~  183 (207)
T d1ls1a2         162 DAR------GGAALSARHVTG-KPIYFAG  183 (207)
T ss_dssp             CSS------CHHHHHHHHHHC-CCEEEEC
T ss_pred             ccc------chHHHHHHHHHC-CCEEEEe
Confidence            543      334445455555 7777665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.15  E-value=6.5e-07  Score=57.75  Aligned_cols=23  Identities=52%  Similarity=0.949  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .||+++|++|||||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.01  E-value=1.4e-06  Score=56.41  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-+|+|.|++|||||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.99  E-value=2.4e-06  Score=54.68  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.7

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....+|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            44579999999999999999999754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.96  E-value=2.1e-06  Score=54.81  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+|+++|++||||||+.+.|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.94  E-value=2.4e-06  Score=55.75  Aligned_cols=26  Identities=27%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .|.+|+|+|++||||||+...|....
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999886543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.93  E-value=3.4e-06  Score=55.17  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +.+..|+|+|++||||||+...|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45567899999999999999998754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.6e-06  Score=53.58  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-++|+|.+|||||||++++...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.90  E-value=4.1e-06  Score=54.68  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+.++|+|+|+|||||||+...|....
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.85  E-value=4.9e-06  Score=53.70  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.81  E-value=6e-06  Score=51.60  Aligned_cols=21  Identities=19%  Similarity=0.659  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |++.|++|||||||++.+...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999998754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=7.2e-06  Score=52.97  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ++|+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998755

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.78  E-value=7.7e-06  Score=52.88  Aligned_cols=24  Identities=21%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+|+|+|+|||||||+...|....
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999887653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.78  E-value=8.7e-06  Score=52.98  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|+++|+|||||||+...|...
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            379999999999999999988754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2e-05  Score=54.43  Aligned_cols=61  Identities=25%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-----CcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYK-----ATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   67 (185)
                      ....=|.|+|+.++|||+|+|.|++....-...     .|.|.-...... ..+....+.++||.|.
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGL   95 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCB
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccc
Confidence            345578899999999999999999866331111     122222211111 2344567888999994

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.1e-05  Score=52.66  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      |+.|+|+|+|||||||....|...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=1e-05  Score=52.22  Aligned_cols=23  Identities=22%  Similarity=0.589  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+|+|++||||||+...|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.73  E-value=9.3e-06  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|++.|++||||||+++.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3788999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=9.7e-06  Score=52.23  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+|+|++||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999888654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=9.1e-06  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=1e-05  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999888644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.2e-05  Score=51.73  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|++.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=1.3e-05  Score=50.96  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      +.|+|.+|||||||+++|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            469999999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.68  E-value=1.8e-05  Score=50.63  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...+-|.++|.+||||||+.+.|...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34477899999999999999888643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=9.6e-06  Score=52.35  Aligned_cols=22  Identities=27%  Similarity=0.739  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+|+||+|+||+||+++|....
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7889999999999999998643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.61  E-value=1.7e-05  Score=50.19  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888644

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.5e-05  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+.-|+++|.+||||||++..+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34567899999999999999988643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=2.3e-05  Score=51.55  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      |.=|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999975

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.59  E-value=1.4e-05  Score=52.25  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..--|+|+|+|||||||+...|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3345889999999999999999764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2.6e-05  Score=50.66  Aligned_cols=25  Identities=40%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ..++=|+|.|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457789999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.55  E-value=2.5e-05  Score=49.77  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999988765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.6e-05  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.4e-05  Score=52.80  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999888754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.53  E-value=3.2e-05  Score=52.83  Aligned_cols=26  Identities=27%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .+.-|++.|+||||||||+.++.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568999999999999999997653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.0003  Score=47.33  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....+++.|++|+||||+++.+...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.7e-05  Score=49.39  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      =+++.|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.52  E-value=2.8e-05  Score=49.99  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 029929           11 VIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~   30 (185)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=3.1e-05  Score=50.20  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+|+||+|||||||++.|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=3.3e-05  Score=51.70  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999887654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=3.1e-05  Score=50.51  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..-|+++|++||||||+...|....
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468889999999999999997643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.49  E-value=3.5e-05  Score=50.60  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46899999999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.48  E-value=3.4e-05  Score=51.86  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=3.4e-05  Score=49.76  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+++||+|||||||++.|....
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6788999999999999997653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.46  E-value=3.9e-05  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |++.|++||||||+.+.|...-
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            5566999999999999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.45  E-value=4.2e-05  Score=51.48  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....+++.||||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.45  E-value=3.5e-05  Score=52.44  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999887654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.44  E-value=5e-05  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999988765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.44  E-value=5.3e-05  Score=51.14  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68999999999999999887654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.44  E-value=4.3e-05  Score=48.69  Aligned_cols=22  Identities=18%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.9e-05  Score=52.12  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999887654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=4.6e-05  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+|+|.|++|||||||+++|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.42  E-value=4.4e-05  Score=51.38  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=4.6e-05  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++|+|+.|||||||++.+.+..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=0.0002  Score=44.82  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKFS   34 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~~   34 (185)
                      .-|++-|+-|||||||++.+...-..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            45788899999999999999865433

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=5.3e-05  Score=49.24  Aligned_cols=21  Identities=33%  Similarity=0.716  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |+|+||+|||||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.38  E-value=3.8e-05  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999998865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.5e-05  Score=49.58  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~   30 (185)
                      |+-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.6e-05  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46899999999999999888764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=6.7e-05  Score=49.40  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      |+|+||+|||||||++.|....
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6788999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.34  E-value=6.6e-05  Score=50.61  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46889999999999999998765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.33  E-value=7.9e-05  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....|++.|++|+|||++++++.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3457999999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=6.2e-05  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            357999999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=4.4e-05  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++++|+.|||||||++.+.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3688999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=7.9e-05  Score=50.14  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.++|+.|||||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999998775

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.2e-05  Score=50.11  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .-|.++|.+||||||+.+.|...
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56788999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.26  E-value=0.0001  Score=48.84  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+.|++-||+||||||....|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            367889999999999999988653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.24  E-value=9e-05  Score=47.68  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=17.4

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHh
Q 029929           10 KV-IILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i-~viG~~~~GKstli~~l~~   30 (185)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 4579999999999998864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=8.1e-05  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.22  E-value=0.0001  Score=50.10  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++++|+.|||||||++.+.+..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36899999999999999998765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.22  E-value=4.6e-05  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            78999999999999998877644

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.21  E-value=9.2e-05  Score=48.13  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            456678999999999999999988754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.21  E-value=5.4e-05  Score=50.92  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00022  Score=46.13  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .++-|+|.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            35778999999999999999886654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00019  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ..+++.||+|+||||+++++.+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.12  E-value=0.00016  Score=48.21  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.10  E-value=0.00013  Score=49.56  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +-.++|.|++|+|||++++.+...-
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999987643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.10  E-value=0.00015  Score=50.77  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.++++||||||||.|.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            457899999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00021  Score=48.34  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.|++.|++|+|||++++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            46999999999999999999964

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00023  Score=46.97  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      =|++.||+||||||+...|..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5677899999999999888654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00032  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -+++++|++|+|||++++.|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            4789999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0003  Score=47.81  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      +-.+++.||+|+|||++++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            346999999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.95  E-value=0.00033  Score=46.09  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ....-|.+.|.+|||||||.+.|...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999998743

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00033  Score=48.84  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45678999999999999999888753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00027  Score=46.89  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ...+++.|++|+||||+++.+...
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHHH
Confidence            346899999999999999887643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00036  Score=47.66  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -+++++|++|+|||++++.|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            48899999999999999887643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.91  E-value=0.00022  Score=48.71  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00031  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999998754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00036  Score=47.44  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +-.|++.||+|+|||++++++....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            4579999999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.90  E-value=0.00027  Score=48.01  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .|+|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            577889999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00048  Score=47.43  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHHH
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l~   29 (185)
                      +..++=|.|.|++|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4567889999999999999987764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00034  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..+++.|++|+||||+++.+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            46899999999999999999764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00053  Score=44.96  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      +.+-|+|.|..||||||+.+.|....+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHCCC
Confidence            346688999999999999998865543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.00037  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.676  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      =+|+++||+|||||-|.++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.74  E-value=0.00077  Score=44.05  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      +-|+|.|..||||||+.+.|....
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G   26 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLG   26 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
Confidence            668999999999999998876443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.00056  Score=44.59  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999988764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00046  Score=47.09  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -.|++.|++|+|||+|++++.+.-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            468999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.002  Score=41.90  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.|.|++|+|||+|+..+..+-
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00099  Score=43.59  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 029929           11 VIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~   30 (185)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999988764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.41  E-value=0.00095  Score=48.29  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|+|.|++||||||++.++...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3789999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.36  E-value=0.0012  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.||||+|||+|..++.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.33  E-value=0.0017  Score=41.29  Aligned_cols=24  Identities=50%  Similarity=0.711  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999988765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.002  Score=44.97  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.++++||+|+|||.|...+...
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            36889999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0013  Score=43.08  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 029929           11 VIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~   30 (185)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.28  E-value=0.0006  Score=48.03  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999999864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00069  Score=45.14  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999988764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.23  E-value=0.0015  Score=42.95  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 029929           11 VIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~~   32 (185)
                      +.+.|++|+|||.|++++++.-
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.21  E-value=0.0019  Score=41.05  Aligned_cols=24  Identities=29%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358899999999999999988765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.21  E-value=0.001  Score=47.50  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .+-+++++||+|||||-|.++|...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            4567999999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.0013  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 029929            9 LKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~   29 (185)
                      -+++++|++|+|||++++.|.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            467999999999999986554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.0032  Score=41.98  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++|.|++|+|||+|...+..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0015  Score=43.37  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -+.|.|++|+|||+|+..+...-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.00026  Score=45.87  Aligned_cols=18  Identities=33%  Similarity=0.708  Sum_probs=16.0

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 029929           12 IILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~   29 (185)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999985

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.10  E-value=0.0015  Score=45.89  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      ...++|.|=|.-||||||+++.|...-
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.07  E-value=0.002  Score=44.15  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|.|.|+.|.|||||+..+++..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.02  E-value=0.00083  Score=46.19  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~   29 (185)
                      =|+|.|++||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.99  E-value=0.0029  Score=39.88  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988887753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0022  Score=42.65  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5778899999999999999764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.97  E-value=0.0027  Score=44.59  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         7 ~~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4589999999999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.91  E-value=0.0027  Score=44.29  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      +++.|+||+|||.|.+++...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.91  E-value=0.002  Score=41.75  Aligned_cols=23  Identities=13%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -.+++.|++++|||+|++++..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            47889999999999999988754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0015  Score=45.21  Aligned_cols=18  Identities=28%  Similarity=0.639  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 029929           12 IILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~   29 (185)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999873

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.83  E-value=0.0028  Score=42.11  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++|.|++|+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5688899999999999888654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0027  Score=45.70  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 029929           12 IILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~   29 (185)
                      +++|+.|||||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999974

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.73  E-value=0.0035  Score=41.68  Aligned_cols=22  Identities=14%  Similarity=0.237  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|++.|..||||||+.+.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999988653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0036  Score=41.72  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      -++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999998754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0041  Score=40.56  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0039  Score=41.53  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.63  E-value=0.0036  Score=41.50  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~~   32 (185)
                      -++|.|++|+|||+|+..+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999987543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0039  Score=40.86  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      |++=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            778899999999999988754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.53  E-value=0.0041  Score=43.52  Aligned_cols=24  Identities=42%  Similarity=0.545  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++|.|=|.-|+||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            478999999999999999988643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.47  E-value=0.0033  Score=43.61  Aligned_cols=16  Identities=31%  Similarity=0.725  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029929           10 KVIILGDSGVGKTSLM   25 (185)
Q Consensus        10 ~i~viG~~~~GKstli   25 (185)
                      .++|.|++||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4789999999999854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.43  E-value=0.0028  Score=43.56  Aligned_cols=15  Identities=33%  Similarity=0.747  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 029929           11 VIILGDSGVGKTSLM   25 (185)
Q Consensus        11 i~viG~~~~GKstli   25 (185)
                      ++|+|++||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688899999999854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.18  E-value=0.0063  Score=39.95  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~   29 (185)
                      -+.|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999987654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0058  Score=44.25  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 029929            9 LKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~   30 (185)
                      -+++|+|++|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4689999999999999877653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.08  E-value=0.0073  Score=40.96  Aligned_cols=19  Identities=26%  Similarity=0.634  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      ++|.|++|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5788999999999987775

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.06  E-value=0.0079  Score=40.83  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      .--+.+.|++++|||+|++.+...
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            456788899999999999998764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.012  Score=40.91  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      .++++|++|+|||.+.+.+...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5678899999999999987643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.0099  Score=40.14  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.015  Score=39.81  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      |++++|++|+|||+|+..+...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.016  Score=41.08  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029929           10 KVIILGDSGVGKTSLMNQY   28 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l   28 (185)
                      -.+|.|++|+||||++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4677899999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.06  E-value=0.026  Score=33.14  Aligned_cols=24  Identities=8%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~~~   31 (185)
                      -|.|.+.|..|+||||+.++|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            389999999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.29  E-value=0.031  Score=37.32  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (185)
Q Consensus         9 ~~i~viG~~~~GKstli~~l~~~~   32 (185)
                      .-|++.|++|+||+.+.+.+....
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhc
Confidence            457999999999999999887543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.031  Score=37.68  Aligned_cols=22  Identities=36%  Similarity=0.397  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      =+.+.|++++|||||+-.+...
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3567899999999999777643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.17  E-value=0.03  Score=33.86  Aligned_cols=18  Identities=33%  Similarity=0.423  Sum_probs=14.1

Q ss_pred             EEEcCCCCCHHH-HHHHHH
Q 029929           12 IILGDSGVGKTS-LMNQYV   29 (185)
Q Consensus        12 ~viG~~~~GKst-li~~l~   29 (185)
                      +++||-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            467999999999 665553

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.60  E-value=0.036  Score=35.08  Aligned_cols=21  Identities=14%  Similarity=0.412  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      ++|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.044  Score=36.23  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      +++.|+..+||||+++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5788999999999999864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.29  E-value=0.055  Score=36.65  Aligned_cols=22  Identities=41%  Similarity=0.741  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888644

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.19  E-value=0.05  Score=35.70  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 029929           11 VIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~   29 (185)
                      +++.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.79  E-value=0.064  Score=34.40  Aligned_cols=25  Identities=8%  Similarity=0.019  Sum_probs=21.6

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~   30 (185)
                      .....+++-|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999988775

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.59  E-value=0.051  Score=32.33  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 029929           10 KVIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~   30 (185)
                      ..+|.+++|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            346789999999998865543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.11  Score=35.00  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=17.4

Q ss_pred             ccceeEEEEEcCCCCCHHHHHHHH
Q 029929            5 RRMLLKVIILGDSGVGKTSLMNQY   28 (185)
Q Consensus         5 ~~~~~~i~viG~~~~GKstli~~l   28 (185)
                      +.++--|++.|.-|+||||+.-.+
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHH
Confidence            344445677899999999966554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.53  E-value=0.094  Score=35.04  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=46.2

Q ss_pred             EEEEEecCCChhhhcc-cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc
Q 029929           57 FTLQIWDTAGQERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNS  134 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~  134 (185)
                      +.+.++|+|+...... ........+|.++++.+.. ..++..+......+.......   +.++ -++.|+.+....  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~---~~~~~~vv~N~~~~~~~--  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSG---GVRLGGIICNSRKVANE--  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTB---BCEEEEEEEECCSSSCC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhcccc---ceeccceEEeeecCCCc--
Confidence            5678889987332221 2222234588888887764 556666556655555443322   3333 378899876542  


Q ss_pred             eeecHHHHHHHHHhcC
Q 029929          135 RVVSEKKAKAWCASKG  150 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (185)
                          .+....+....+
T Consensus       190 ----~~~~~~~~~~~~  201 (269)
T d1cp2a_         190 ----YELLDAFAKELG  201 (269)
T ss_dssp             ----HHHHHHHHHHHT
T ss_pred             ----cchhhhhHhhcC
Confidence                233444555444

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.04  E-value=0.11  Score=35.06  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 029929           11 VIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~~   31 (185)
                      +.+.|++++|||+|+-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            567899999999999887643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.88  E-value=0.76  Score=29.45  Aligned_cols=66  Identities=8%  Similarity=0.077  Sum_probs=42.7

Q ss_pred             EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCC
Q 029929           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDG  131 (185)
Q Consensus        56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~  131 (185)
                      .+.+.++|+|+....  .....+..+|.++++...+ ..+...+.+....+.+.       +.|++ +|+|+.+...
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-------~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-------GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-------TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-------hhhhhhhhhccccccc
Confidence            457788999885432  2334567799999999875 44555555544444321       55665 8899998654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.12  Score=32.99  Aligned_cols=19  Identities=26%  Similarity=0.366  Sum_probs=15.6

Q ss_pred             EEEEEcCC-CCCHHHHHHHH
Q 029929           10 KVIILGDS-GVGKTSLMNQY   28 (185)
Q Consensus        10 ~i~viG~~-~~GKstli~~l   28 (185)
                      ++.|.|.. |+||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            67899995 99999977555

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=0.077  Score=36.47  Aligned_cols=14  Identities=50%  Similarity=0.807  Sum_probs=12.5

Q ss_pred             EEEcCCCCCHHHHH
Q 029929           12 IILGDSGVGKTSLM   25 (185)
Q Consensus        12 ~viG~~~~GKstli   25 (185)
                      ++.|..|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999965

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.60  E-value=0.13  Score=34.72  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 029929           11 VIILGDSGVGKTSLMNQYVN   30 (185)
Q Consensus        11 i~viG~~~~GKstli~~l~~   30 (185)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56789999999999876653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.36  E-value=0.099  Score=35.55  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998776543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.31  E-value=0.081  Score=36.48  Aligned_cols=15  Identities=47%  Similarity=0.756  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 029929           11 VIILGDSGVGKTSLM   25 (185)
Q Consensus        11 i~viG~~~~GKstli   25 (185)
                      -++.|..|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            478899999999965

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.62  E-value=0.1  Score=35.97  Aligned_cols=15  Identities=47%  Similarity=0.753  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 029929           11 VIILGDSGVGKTSLM   25 (185)
Q Consensus        11 i~viG~~~~GKstli   25 (185)
                      -++.|..|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            368999999999976

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.58  E-value=0.21  Score=31.52  Aligned_cols=16  Identities=31%  Similarity=0.553  Sum_probs=13.3

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029929           10 KVIILGDSGVGKTSLM   25 (185)
Q Consensus        10 ~i~viG~~~~GKstli   25 (185)
                      ++++.+++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5788899999999743

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.2  Score=33.44  Aligned_cols=20  Identities=35%  Similarity=0.672  Sum_probs=14.4

Q ss_pred             eEEEE-EcCCCCCHHHHHHHH
Q 029929            9 LKVII-LGDSGVGKTSLMNQY   28 (185)
Q Consensus         9 ~~i~v-iG~~~~GKstli~~l   28 (185)
                      .+|++ -|.-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            34444 599999999975444

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=0.25  Score=29.34  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=13.7

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 029929           12 IILGDSGVGKTSLMNQYV   29 (185)
Q Consensus        12 ~viG~~~~GKstli~~l~   29 (185)
                      +++||-.|||||-+-+..
T Consensus         6 li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHH
Confidence            467999999999654443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.04  E-value=0.19  Score=33.92  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 029929           10 KVIILGDSGVGKTSLMNQYVNR   31 (185)
Q Consensus        10 ~i~viG~~~~GKstli~~l~~~   31 (185)
                      |+.++|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6789999999999998765544

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.29  E-value=0.29  Score=29.40  Aligned_cols=21  Identities=24%  Similarity=0.359  Sum_probs=14.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 029929            8 LLKVIILGDSGVGKTSLMNQYV   29 (185)
Q Consensus         8 ~~~i~viG~~~~GKstli~~l~   29 (185)
                      .+.+ ++|+-.|||||-+-+..
T Consensus         8 ~l~l-I~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           8 WVEV-IVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEEE-EECSTTSSHHHHHHHHH
T ss_pred             eEEE-EEeccccHHHHHHHHHH
Confidence            3444 47999999999554443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.18  E-value=0.27  Score=33.12  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=35.7

Q ss_pred             EEEEEecCCChhhhcccc-cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCC
Q 029929           57 FTLQIWDTAGQERFQSLG-VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDV  129 (185)
Q Consensus        57 ~~~~~~D~~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl  129 (185)
                      +.+.++|+|+........ ......+|.++++.... ..+...+......+.......   +.++ -+|.|+.+.
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~---~~~~~gvv~n~~~~  189 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSG---SVRLGGLICNSRNT  189 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTS---CCEEEEEEEECCCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcc---cccccceeehhhcc
Confidence            566788987743222211 11223567777665544 445555555555554433221   3344 378898764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.24  E-value=0.12  Score=30.34  Aligned_cols=17  Identities=24%  Similarity=0.366  Sum_probs=13.3

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 029929            9 LKVIILGDSGVGKTSLM   25 (185)
Q Consensus         9 ~~i~viG~~~~GKstli   25 (185)
                      -++++.+++|+|||..+
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            46678899999999543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.68  E-value=1.1  Score=27.78  Aligned_cols=26  Identities=12%  Similarity=0.321  Sum_probs=17.9

Q ss_pred             cceeEEEEEcC-CCCCHHHHHHHHHhCC
Q 029929            6 RMLLKVIILGD-SGVGKTSLMNQYVNRK   32 (185)
Q Consensus         6 ~~~~~i~viG~-~~~GKstli~~l~~~~   32 (185)
                      .+++||.|+|. .+.|- +|+..|....
T Consensus        22 k~~~kV~I~GA~G~Ig~-~l~~~La~g~   48 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISN-HLLFKLASGE   48 (175)
T ss_dssp             CCCEEEEEETTTSHHHH-HHHHHHHHTT
T ss_pred             CCCcEEEEECCCcHHHH-HHHHHHHcCc
Confidence            35789999997 55664 5555666654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.64  E-value=0.12  Score=32.85  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029929           10 KVIILGDSGVGKTSLM   25 (185)
Q Consensus        10 ~i~viG~~~~GKstli   25 (185)
                      ++++.+++|+|||+..
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            6889999999999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.91  E-value=1.1  Score=24.73  Aligned_cols=28  Identities=18%  Similarity=0.448  Sum_probs=23.3

Q ss_pred             cceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 029929            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF   33 (185)
Q Consensus         6 ~~~~~i~viG~~~~GKstli~~l~~~~~   33 (185)
                      ...-+|.|+|-.|+|.|.|...|....+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~   33 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGY   33 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCC
Confidence            3456899999999999999988877653

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.69  E-value=0.42  Score=34.32  Aligned_cols=16  Identities=31%  Similarity=0.472  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029929           10 KVIILGDSGVGKTSLM   25 (185)
Q Consensus        10 ~i~viG~~~~GKstli   25 (185)
                      .++|.+.+|||||+.+
T Consensus        18 ~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          18 ERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEEcCchHHHHHH
Confidence            5778888999999865