Citrus Sinensis ID: 029937

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEcccccEEcccccEEEEEEEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccEEEccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccEEEEEEEccccccccccccccccEEEccccccccEEEEcccccEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccHHHHHcHHHHcccEEEEEcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEcccEHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccEEHHHEEEcccccccccccccccccccEEcccccccEEEEcccccHEEccc
Coil and Loop (DISEMBL)
mkcvyvfscrcldidfnfhaintlpYFISRQLfvmgsegppavtiHVTGFkkfhgvsenptETIVSNLREYMKkkgmpkglilgscniletaghgavapLYQTLQSAInekdsesansRRIIWVHFGVNSGATRFAIEQQAVNeatfrcpdemgwkpqkvpifpadgeisRVREVEMISLFLCAF
Flexible Loop (DISEMBL)
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFkkfhgvsenpteTIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Low Complexity Region (SEG)
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Disordered region (IsUnstruct)
**CVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSA***********RRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA*
Disordered Region (DISOPRED)
*KCVYVFSCRCLDIDFNFHAINTLPYFISRQLFV**SEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Disordered Region (DISEMBL)
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Disordered Region (DISPRO)
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKCVYVFSCRCLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
O73944	208	Pyrrolidone-carboxylate p	yes	no	0.551	0.490	0.310	2e-05
B7LKQ5	214	Pyrrolidone-carboxylate p	yes	no	0.562	0.485	0.272	0.0006
O58321	206	Pyrrolidone-carboxylate p	yes	no	0.529	0.475	0.296	0.0007

>sp|O73944|PCP_PYRFU Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49

Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3

>sp|B7LKQ5|PCP_ESCF3 Pyrrolidone-carboxylate peptidase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pcp PE=3 SV=1

 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 17/121 (14%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
           T+ +TGF+ F G   NP+  +VS L             ILG C ++              
Sbjct: 3   TVLITGFEPFGGEQINPSWEVVSQLDNA----------ILGGCRVVARQLPCVFGESLAV 52

Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
           L SAI+            + +  G   G T   +E+ A+N    R PD  G +P  VP+ 
Sbjct: 53  LNSAIDALSPS-------VVLAVGQAGGRTDITVERVAINVDDARIPDNRGNQPVDVPVI 105

Query: 164 P 164
           P
Sbjct: 106 P 106

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) (taxid: 585054)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

>sp|O58321|PCP_PYRHO Pyrrolidone-carboxylate peptidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pcp PE=1 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 20/118 (16%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           I +TGF+ F G  +NPT  IV  L E + +       ++G   IL  +   A   L + L
Sbjct: 3   ILLTGFEPFGGDDKNPTMDIVEALSERIPE-------VVGE--ILPVSFKRAREKLLKVL 53

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
                       + R  I ++ G+  G T  ++E+ AVN    R PD  G +P+  PI
Sbjct: 54  D-----------DVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPI 100

Removes 5-oxoproline from various penultimate amino acid residues except L-proline.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
225450494	219	PREDICTED: pyrrolidone-carboxylate pepti	0.772	0.652	0.874	3e-70
225450496	219	PREDICTED: pyrrolidone-carboxylate pepti	0.772	0.652	0.874	6e-70
255542992	219	pyroglutamyl-peptidase I, putative [Rici	0.772	0.652	0.853	7e-69
224124574	219	predicted protein [Populus trichocarpa]	0.772	0.652	0.825	5e-67
224124970	219	predicted protein [Populus trichocarpa]	0.772	0.652	0.825	2e-66
356505749	222	PREDICTED: pyrrolidone-carboxylate pepti	0.772	0.644	0.772	7e-60
449435568	220	PREDICTED: pyrrolidone-carboxylate pepti	0.772	0.65	0.741	1e-59
356575313	178	PREDICTED: pyrrolidone-carboxylate pepti	0.8	0.831	0.771	3e-59
351724685	222	uncharacterized protein LOC100306599 [Gl	0.772	0.644	0.765	5e-59
357441915	226	Pyrrolidone-carboxylate peptidase [Medic	0.772	0.632	0.765	1e-58

>gi|225450494|ref|XP_002280759.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Vitis vinifera]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 133/143 (93%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPPAVTIHVTGFKKFHGVS+NPTETIVSNL+EYMKK G+PKGLILGSCNILETAG 
Sbjct: 1   MGSEGPPAVTIHVTGFKKFHGVSDNPTETIVSNLQEYMKKNGLPKGLILGSCNILETAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GA+ PLYQTLQSAI+ KDSES+NS+RIIWVHFGVNSGATRFAIE QAVNEATFRCPDEMG
Sbjct: 61  GALVPLYQTLQSAISGKDSESSNSKRIIWVHFGVNSGATRFAIEHQAVNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQKVPI PADG ISR RE  +
Sbjct: 121 WKPQKVPIIPADGGISRTRETSL 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450496|ref|XP_002280794.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 4 [Vitis vinifera]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 133/143 (93%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPPAVTIHVTGFKKFHGVS+NPTETIVSNL+EYMKK G+PKGLILGSCNILETAG 
Sbjct: 1   MGSEGPPAVTIHVTGFKKFHGVSDNPTETIVSNLQEYMKKNGLPKGLILGSCNILETAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GA+ PLYQTLQSAI+ KDSES+NS+RIIWVHFGVNSGATRFAIE QAVNEATFRCPDEMG
Sbjct: 61  GALVPLYQTLQSAISGKDSESSNSKRIIWVHFGVNSGATRFAIEHQAVNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQKVPI PADG ISR RE  +
Sbjct: 121 WKPQKVPIIPADGGISRTRETSL 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542992|ref|XP_002512559.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223548520|gb|EEF50011.1| pyroglutamyl-peptidase I, putative [Ricinus communis]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 132/143 (92%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPPAVTIHVTGFKKFHGVSENPTETIV+NLREYMKKKGMPKG+ILG+CN+LETAG 
Sbjct: 1   MGSEGPPAVTIHVTGFKKFHGVSENPTETIVTNLREYMKKKGMPKGVILGNCNVLETAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GAV PLYQTLQ+AIN KDSES+N  R IW+HFGVNSGATRFAIE QAVNEATFRCPDEMG
Sbjct: 61  GAVIPLYQTLQTAINSKDSESSNPGRTIWLHFGVNSGATRFAIEHQAVNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQK+PI P+DG ISRVRE  +
Sbjct: 121 WKPQKLPIIPSDGGISRVRETTL 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124574|ref|XP_002330057.1| predicted protein [Populus trichocarpa] gi|118487308|gb|ABK95482.1| unknown [Populus trichocarpa] gi|222871482|gb|EEF08613.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/143 (82%), Positives = 131/143 (91%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPPAVTIHVTGFKKFHGV+ENPTETIV NL+EYMKKKGMPKG+ILGSC++LE+AG 
Sbjct: 1   MGSEGPPAVTIHVTGFKKFHGVAENPTETIVGNLKEYMKKKGMPKGVILGSCSVLESAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GAVAPLYQ  QS+IN KDSES++  RIIW+HFGVNSGATRFAIE QAVNEATFRCPDE+G
Sbjct: 61  GAVAPLYQIFQSSINSKDSESSSPGRIIWLHFGVNSGATRFAIEHQAVNEATFRCPDELG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQKVPI P+DG ISRVRE  +
Sbjct: 121 WKPQKVPIIPSDGGISRVRETTL 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124970|ref|XP_002319470.1| predicted protein [Populus trichocarpa] gi|118483857|gb|ABK93819.1| unknown [Populus trichocarpa] gi|222857846|gb|EEE95393.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/143 (82%), Positives = 129/143 (90%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEG PAVTIHVTGFKKFHGV+ENPTETIVSNL+EYMKKKGMPKG++LGSCN+LE AG 
Sbjct: 1   MGSEGLPAVTIHVTGFKKFHGVAENPTETIVSNLKEYMKKKGMPKGVVLGSCNVLEAAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           G V+PLYQT QSAIN KD ES++  RIIW+HFGVNSGATRFAIE QAVNEATFRCPDEMG
Sbjct: 61  GGVSPLYQTFQSAINSKDYESSSPGRIIWLHFGVNSGATRFAIEHQAVNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQKVPI P+DG ISRVRE  +
Sbjct: 121 WKPQKVPIIPSDGGISRVRETTL 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505749|ref|XP_003521652.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Glycine max] gi|356505751|ref|XP_003521653.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Glycine max]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 35  MGSEGPPAVT--IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETA 92
           MGSEGP   T  IHVTGFKKFHGVSENPTETI +NL EYM KKG+PKGL++GSC+ILETA
Sbjct: 1   MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKGLVIGSCSILETA 60

Query: 93  GHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDE 152
           G GA+ PLYQ LQSA+  KD+ES+NS RIIW+HFGVNSGATRFAIE QAVNEA FRCPDE
Sbjct: 61  GQGALVPLYQRLQSAVIAKDTESSNSNRIIWLHFGVNSGATRFAIENQAVNEANFRCPDE 120

Query: 153 MGWKPQKVPIFPADGEISRVREVEM 177
           MGWKPQKVPI P+DG ISR RE  +
Sbjct: 121 MGWKPQKVPIVPSDGGISRTRETSL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 125/143 (87%)

Query: 35  MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
           MGSEGPP+VTIHVTGFKKFHGVS+NPTETIV+NL++YM+K G+P+GL +GSC+ILETAG 
Sbjct: 1   MGSEGPPSVTIHVTGFKKFHGVSDNPTETIVNNLKKYMEKNGLPEGLTIGSCSILETAGQ 60

Query: 95  GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
           GA+  L++TLQSA+  K SE  NSRRIIW+H GVNSGA+RFAIE+QA NEATFRCPDEMG
Sbjct: 61  GALDLLHKTLQSAVEGKGSEPTNSRRIIWLHLGVNSGASRFAIERQAFNEATFRCPDEMG 120

Query: 155 WKPQKVPIFPADGEISRVREVEM 177
           WKPQKVPI   DGE+SR RE  +
Sbjct: 121 WKPQKVPIVLEDGEVSRARETSL 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575313|ref|XP_003555786.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 4 [Glycine max]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 134/149 (89%), Gaps = 1/149 (0%)

Query: 35  MGSEGPPA-VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAG 93
           MGSEGPPA VT+HVTGFKKFHGVSENPTETIV+NL EY+KKKG+ KGL++GSC+ILETAG
Sbjct: 1   MGSEGPPAAVTVHVTGFKKFHGVSENPTETIVNNLTEYLKKKGLSKGLVIGSCSILETAG 60

Query: 94  HGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEM 153
            GA+ PLY+TLQSAI  K+SES++S +IIW+HFGVNSGATRFAIE+QAVNEATFRCPDEM
Sbjct: 61  QGALIPLYKTLQSAITSKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDEM 120

Query: 154 GWKPQKVPIFPADGEISRVREVEMISLFL 182
           GWKPQKVPI P+D  I+R+R+    SLFL
Sbjct: 121 GWKPQKVPIVPSDVAITRIRKNGTKSLFL 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724685|ref|NP_001237322.1| uncharacterized protein LOC100306599 [Glycine max] gi|255629021|gb|ACU14855.1| unknown [Glycine max]

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 35  MGSEGPPAVT--IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETA 92
           MGSEGP   T  IHVTGFKKFHGVSENPTETI +NL EYM KKG+PK L++GS +ILETA
Sbjct: 1   MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKRLVIGSSSILETA 60

Query: 93  GHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDE 152
           G GA+ PLYQ LQSA+N KDSES+NS +IIW+HFGVNSGATRFAIE+QAVNEA FRCPDE
Sbjct: 61  GQGALVPLYQRLQSAVNAKDSESSNSNKIIWLHFGVNSGATRFAIEKQAVNEANFRCPDE 120

Query: 153 MGWKPQKVPIFPADGEISRVREVEM 177
           MGWKPQKVPI P+DG ISR RE  +
Sbjct: 121 MGWKPQKVPIVPSDGGISRTRETTL 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441915|ref|XP_003591235.1| Pyrrolidone-carboxylate peptidase [Medicago truncatula] gi|355480283|gb|AES61486.1| Pyrrolidone-carboxylate peptidase [Medicago truncatula] gi|388515769|gb|AFK45946.1| unknown [Medicago truncatula]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 130/145 (89%), Gaps = 2/145 (1%)

Query: 35  MGSEGPPA--VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETA 92
           MGSEGP A   T+++TGFKKFHGVSENPTETIV+NL EY+KKKG+PKGL +GSC+IL+TA
Sbjct: 1   MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTA 60

Query: 93  GHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDE 152
           G GA+ PLYQTLQSAI  K+SES++S +IIW+HFGVNSGATRFAIE+QAVNEATFRCPDE
Sbjct: 61  GQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 120

Query: 153 MGWKPQKVPIFPADGEISRVREVEM 177
           MGWKPQKVPI P+DG ISR+RE  +
Sbjct: 121 MGWKPQKVPIVPSDGPISRIRETTL 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2027615	219	AT1G56700 [Arabidopsis thalian	0.767	0.648	0.685	4e-51
TAIR|locus:2028906	217	AT1G23440 [Arabidopsis thalian	0.745	0.635	0.607	3.4e-45
DICTYBASE|DDB_G0267498	207	pgpep "pyroglutamyl-peptidase	0.6	0.536	0.319	1.5e-10

TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 98/143 (68%), Positives = 117/143 (81%)

Query:    35 MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
             MGSEGP  VTIH+TGFKKFHGV+ENPTE + +NL+EY+ K  + K + LGSC +LETAG 
Sbjct:     1 MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQ 60

Query:    95 GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
             GA+A LYQ LQSA+N K+SES   + I WVHFGVNSGAT+FAIEQQAVNEATFRCPDE+G
Sbjct:    61 GALASLYQLLQSAVNTKESESLTGKTI-WVHFGVNSGATKFAIEQQAVNEATFRCPDELG 119

Query:   155 WKPQKVPIFPADGEISRVREVEM 177
             WKPQ +PI P+DG IS VR+  +
Sbjct:   120 WKPQNLPIVPSDGPISTVRKTNL 142

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 85/140 (60%), Positives = 112/140 (80%)

Query:    35 MGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
             MGSEGP A+TIHVTGFKKF GVSENPTE I + L+ Y++K+G+P GL LGSC++L+TAG 
Sbjct:     1 MGSEGPKAITIHVTGFKKFLGVSENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTAGE 60

Query:    95 GAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG 154
             GA + LY+ L+S++   D    N+  ++W+H GVNSGAT+FAIE+QAVNEA FRCPDE+G
Sbjct:    61 GAKSKLYEVLESSVVSGDKN--NNGTVVWLHLGVNSGATKFAIERQAVNEAHFRCPDELG 118

Query:   155 WKPQKVPIFPADGEISRVRE 174
             W+PQ++PI   DG IS+ +E
Sbjct:   119 WQPQRLPIVVEDGGISKAKE 138

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 39/122 (31%), Positives = 64/122 (52%)

Query:    45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMP-KGLI---LGSCNILETAGHGAVAPL 100
             I ++GF  F GVS+NP+  +++ ++ Y+   G+P K  +   +   N+++ +G+G    L
Sbjct:     6 IILSGFGTFCGVSDNPSSQLMNEIKTYIN--GIPNKDELRFEIIDINVIKVSGNGVKDYL 63

Query:   101 YQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKV 160
              Q   + +     +       I +HFGV+S  T   +E+   N A FRC DE  WKPQ  
Sbjct:    64 NQIETNYLKTSKDDIP-----ILIHFGVSSSETNNRLERYGWNMADFRCDDEDMWKPQNE 118

Query:   161 PI 162
             PI
Sbjct:   119 PI 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       185   0.00080  110 3  11 22  0.39    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.97u 0.15s 17.12t   Elapsed:  00:00:01
  Total cpu time:  16.97u 0.15s 17.12t   Elapsed:  00:00:01
  Start:  Fri May 10 01:33:35 2013   End:  Fri May 10 01:33:36 2013

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
cd00501	194	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG	4e-22
PRK13194	208	PRK13194, PRK13194, pyrrolidone-carboxylate peptid	3e-06
PRK13193	209	PRK13193, PRK13193, pyrrolidone-carboxylate peptid	8e-05
COG2039	207	COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N	1e-04
PRK13197	215	PRK13197, PRK13197, pyrrolidone-carboxylate peptid	0.002

>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

 Score = 88.1 bits (219), Expect = 4e-22
 Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 25/136 (18%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNI----LETAGHGAVA 98
             + VTGF  F G   NP+   V  L            LILG   +    L      AV 
Sbjct: 1   KKVLVTGFGPFGGEPVNPSWEAVKEL----------PKLILGGAEVVGLELPVVFQKAVE 50

Query: 99  PLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQ 158
            L + ++             +  + +H G+  G +   IE+ A+N    R PD  G +P 
Sbjct: 51  VLPELIEEH-----------KPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPI 99

Query: 159 KVPIFPADGEISRVRE 174
             PI P          
Sbjct: 100 DEPIVPGGPAAYFSTL 115

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194

>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G  +NPT  IV  L    KK G  K               G V P+  + + 
Sbjct: 5   VTGFEPFGGDKKNPTMDIVKALDG--KKIGDAKVF-------------GRVLPV--SFKR 47

Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
           A  E +      +  I ++ G+  G T  ++E+ AVN    R PD  G KP+  PI  
Sbjct: 48  AREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVE 105

Length = 208

>gnl|CDD|237298 PRK13193, PRK13193, pyrrolidone-carboxylate peptidase; Provisional

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPL-Y 101
           +T+ + GF+ F    ENP++ IV  L      K   KG+IL               P+ Y
Sbjct: 1   MTVLLFGFEPFLEYKENPSQLIVEALNGSTILKEEVKGVIL---------------PVEY 45

Query: 102 QTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMG--WKPQK 159
           + ++  I  K  E    + I+ +  GV  G  +   E+ A+N    R  D  G  +K +K
Sbjct: 46  EKIEDLIVTKIRE---MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEK 102

Query: 160 VPIFPADGEISRVREVEMISLF 181
           +     DG  + +   +++ L 
Sbjct: 103 IDPLGQDGIFTNIPVEDLVDLL 124

Length = 209

>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 24/127 (18%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGS---CNILETAGHGAVAPL 100
            + VTGF+ F G   NP+   V         K +   +I G+     IL      ++  L
Sbjct: 2   KVLVTGFEPFGGEPINPSWEAV---------KELNGRIIGGAEVKGRILPVVFKKSIDAL 52

Query: 101 YQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKV 160
            Q +              +  + +  G   G T+   E+ A+N    R PD  G +P   
Sbjct: 53  VQAIAE-----------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDE 101

Query: 161 PIFPADG 167
           PI P DG
Sbjct: 102 PIDP-DG 107

Length = 207

>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 26/129 (20%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNI----LETAGHGAVAP 99
            I VTGF  F G   NP+   V  L           G  +G   I    L T    +   
Sbjct: 3   KILVTGFDPFGGEKINPSWEAVKQL----------PGKEIGGAEIIKRQLPTVFGKSAEV 52

Query: 100 LYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQK 159
           L + +         E      +I +  G   G T    E+ A+N    R PD  G +P  
Sbjct: 53  LKEAI---------EEVQPDAVICI--GQAGGRTDITPERVAINIDDARIPDNEGNQPID 101

Query: 160 VPIFPADGE 168
            PI   DG 
Sbjct: 102 EPIVE-DGP 109

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PF01470	202	Peptidase_C15: Pyroglutamyl peptidase This is fami	100.0
PRK13195	222	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13194	208	pyrrolidone-carboxylate peptidase; Provisional	100.0
PRK13193	209	pyrrolidone-carboxylate peptidase; Provisional	100.0
COG2039	207	Pcp Pyrrolidone-carboxylate peptidase (N-terminal	100.0
PRK13196	211	pyrrolidone-carboxylate peptidase; Provisional	100.0
TIGR00504	212	pyro_pdase pyroglutamyl-peptidase I. Alternate nam	100.0
PRK13197	215	pyrrolidone-carboxylate peptidase; Provisional	100.0
cd00501	194	Peptidase_C15 Pyroglutamyl peptidase (PGP) type I,	99.98
PF06162	166	DUF976: Caenorhabditis elegans protein of unknown	99.7
KOG4755	213	consensus Predicted pyroglutamyl peptidase [Posttr	98.91

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification

Probab=100.00  E-value=9.6e-36  Score=247.23  Aligned_cols=121  Identities=28%  Similarity=0.400  Sum_probs=88.2

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|++..    . .+. .++..+|||+|+.+.+.+    +++|+       +++||+|
T Consensus         2 ~ILvTGFgpF~~~~~NpS~~~v~~L~~~~----~-~~~-~v~~~~lPV~~~~~~~~l----~~~l~-------~~~PdlV   64 (202)
T PF01470_consen    2 RILVTGFGPFGGVPVNPSWELVKRLPGEL----I-GGA-EVHTRELPVSYEKAFEAL----EELLE-------EHQPDLV   64 (202)
T ss_dssp             EEEEEEE-S-TT-SS-HHHHHHHHHTTSE----E-TTE-EEEEEEE-SSHHHHHHHH----HHHHH-------HH--SEE
T ss_pred             EEEEecccCCCCCCCChHHHHHHHcCCCc----C-CCc-eEEEEEecCchHhHHHHH----HHHHH-------hcCCcEE
Confidence            89999999999999999999999998521    1 222 457789999999998875    66676       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+||+++++.|+||++|+|.+++++||++|++|.+++|+++||   .+|+|+||+++|++
T Consensus        65 IhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~~gp---~~~~t~lp~~~l~~  122 (202)
T PF01470_consen   65 IHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVPDGP---EAYFTTLPVRALVE  122 (202)
T ss_dssp             EEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SSTTS----SEEE-BS-HHHHHH
T ss_pred             EEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccCCCc---cceecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999864

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....

>PRK13195 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=4.7e-35  Score=246.77  Aligned_cols=121  Identities=19%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++++.|.+.    .+ .+. .+...+|||+|+.+.+.+    +++++       +++||+|
T Consensus         3 ~ILvTGF~PFgg~~~NPS~~~v~~L~~~----~~-~~~-~v~~~~lPv~f~~~~~~l----~~~i~-------~~~Pd~V   65 (222)
T PRK13195          3 KVLVTGFGPYGVTPVNPAQLTAEELDGR----TI-AGA-TVISRIVPNTFFESIAAA----QQAIA-------EIEPALV   65 (222)
T ss_pred             EEEEeeecCCCCCCcCchHHHHHhcccc----cc-CCe-EEEEEEeCeEehHHHHHH----HHHHH-------HHCCCEE
Confidence            6999999999999999999999999852    12 121 345679999999998875    66666       7899999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCC---CCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFR---CPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~---~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|++||+|+|.+|++   +|||+|++|.+++|+++||   .+|+|+||+++|++
T Consensus        66 i~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp---~ay~stLpv~~iv~  126 (222)
T PRK13195         66 IMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDPAGP---VAYHATVPVRAMVL  126 (222)
T ss_pred             EEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccCCCc---ceeecCCCHHHHHH
Confidence            9999999999999999999998864   9999999999999999997   58999999999874

>PRK13194 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=5.3e-35  Score=244.38  Aligned_cols=121  Identities=26%  Similarity=0.333  Sum_probs=107.2

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++++.|.+..    + .+ ..+...+|||+|+.+.+.+    +++|+       +++||+|
T Consensus         2 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~-~~v~~~~LPV~~~~~~~~l----~~~l~-------~~~Pd~v   64 (208)
T PRK13194          2 KVLVTGFEPFGGDKKNPTMDIVKALDGKK----I-GD-AKVFGRVLPVSFKRAREEL----EKVLD-------EIKPDIT   64 (208)
T ss_pred             EEEEEeeCCCCCCCCCcHHHHHHhccccc----c-CC-cEEEEEEeCCchHhHHHHH----HHHHH-------HhCCCEE
Confidence            69999999999999999999999998631    2 12 1456779999999999885    66666       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|.+++++||++|++|.+++|+++||   .+|+|+||+++|+.
T Consensus        65 lhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp---~~y~ttlp~~~l~~  122 (208)
T PRK13194         65 INLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGAP---AAYFATLPTREIVE  122 (208)
T ss_pred             EEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCC---CcccCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999763

>PRK13193 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=6.2e-35  Score=244.13  Aligned_cols=121  Identities=22%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++++.|.+... .    +. .+...+|||+|+.+.+.|    ..+|+       +++||+|
T Consensus         2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~-~----~~-~v~~~~LPv~~~~~~~~l----~~~~~-------~~~Pd~v   64 (209)
T PRK13193          2 TVLLFGFEPFLEYKENPSQLIVEALNGSTI-L----KE-EVKGVILPVEYEKIEDLI----VTKIR-------EMKPILT   64 (209)
T ss_pred             EEEEEeeCCCCCCCCCcHHHHHHHhhcccc-C----Cc-eEEEEEeCCcHHHHHHHH----HHHHH-------HHCCCEE
Confidence            699999999999999999999999986311 1    11 345679999999999885    66666       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|.+++++|||+|++|.+++|+++||   .+|+|+||+++|++
T Consensus        65 l~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~~gp---~~~~t~lp~~~l~~  122 (209)
T PRK13193         65 LGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQ---DGIFTNIPVEDLVD  122 (209)
T ss_pred             EEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcccCCCc---ceeecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999864

>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-35  Score=241.49  Aligned_cols=121  Identities=25%  Similarity=0.294  Sum_probs=108.5

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +||||||+||++++.||||++|+.|+.... .+     ..+...+|||+|.++.+.|    ...++       +.+||+|
T Consensus         2 kvLvTGFePF~~~~~NPs~e~vk~L~~~~i-~g-----~~V~~~~lP~~f~~s~~~l----~~~i~-------~~qPd~v   64 (207)
T COG2039           2 KVLVTGFEPFGGEPINPSWEAVKELNGRII-GG-----AEVKGRILPVVFKKSIDAL----VQAIA-------EVQPDLV   64 (207)
T ss_pred             eEEEEeccCCCCCCCChHHHHHHhcCcccc-cC-----ceEEEEEcCccHHHHHHHH----HHHHH-------hhCCCeE
Confidence            699999999999999999999999986421 11     2456779999999999885    56666       7899999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      |.+|+|+||..|++||+|+|..|+++|||+|++|.|++|.+|||   .+||||||+++|++
T Consensus        65 l~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~dGp---aAYfstlPvkamv~  122 (207)
T COG2039          65 LAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDPDGP---AAYFSTLPVKAMVQ  122 (207)
T ss_pred             EEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCCCCc---hhhhhcCcHHHHHH
Confidence            99999999999999999999999999999999999999999998   57999999999864

>PRK13196 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=1.2e-34  Score=242.63  Aligned_cols=121  Identities=22%  Similarity=0.295  Sum_probs=108.1

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||++++.||||++++.|++..    . .+. .+...+|||+|+.+.+.|    +++|+       +++||+|
T Consensus         3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~~-~v~~~~LPV~~~~~~~~l----~~~~~-------~~~Pd~v   65 (211)
T PRK13196          3 TLLLTGFEPFHTHPVNPSAQAAQALNGEQ----A-GAL-RVHSALLPVEPRAAMAAL----SRLLD-------ELQPSAV   65 (211)
T ss_pred             EEEEEeecCCCCCCCCcHHHHHHhccccc----C-CCc-EEEEEEeCCChhHHHHHH----HHHHH-------HhCCCEE
Confidence            89999999999999999999999998642    1 111 356779999999999875    77887       7899999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcc--cCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI--FPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I--~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|.+++++|||+|++|.+++|  +++||   .+|+|+||+++|++
T Consensus        66 i~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp---~~y~stLpv~~l~~  125 (211)
T PRK13196         66 LLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAP---AAYLSTLPLRAILA  125 (211)
T ss_pred             EEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCCCCc---cceecCCCHHHHHH
Confidence            999999999999999999999999999999999999999  88887   57999999999864

>TIGR00504 pyro_pdase pyroglutamyl-peptidase I

Probab=100.00  E-value=1.2e-33  Score=236.76  Aligned_cols=120  Identities=24%  Similarity=0.318  Sum_probs=106.5

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|....    +  +. .+...+|||+|+.+.+.+    .++|+       +++||+|
T Consensus         1 ~ILvTGF~PF~~~~~NPS~~~v~~L~~~~----~--g~-~i~~~~lPV~~~~~~~~l----~~~l~-------~~~Pd~v   62 (212)
T TIGR00504         1 KVLLTGFEPFGVDPVNPSWEAAEELDGRT----I--GA-TVVAEILPNTFFEAIEAL----QQAID-------EIEPDIV   62 (212)
T ss_pred             CEEEEeccCCCCCCCCcHHHHHHhcccCc----C--Cc-EEEEEEeCCChHHHHHHH----HHHHH-------HHCCCEE
Confidence            49999999999999999999999998631    1  11 456779999999998875    66666       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|.+++++|||+|++|.+++|+++||   .+|+|+||+++|+.
T Consensus        63 i~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttLpv~~l~~  120 (212)
T TIGR00504        63 IMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDGP---AAYFATLPVRAMVL  120 (212)
T ss_pred             EEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCCC---ceeecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999864

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.

>PRK13197 pyrrolidone-carboxylate peptidase; Provisional

Probab=100.00  E-value=3.7e-33  Score=234.05  Aligned_cols=121  Identities=25%  Similarity=0.230  Sum_probs=106.9

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|...    .+ .+. .+...+|||+|+.+.+.+    .++++       +++||+|
T Consensus         3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~----~~-~~~-~i~~~~lPV~y~~~~~~l----~~~l~-------~~~Pd~v   65 (215)
T PRK13197          3 KILVTGFDPFGGEKINPSWEAVKQLPGK----EI-GGA-EIIKRQLPTVFGKSAEVL----KEAIE-------EVQPDAV   65 (215)
T ss_pred             EEEEeeccCCCCCCCCcHHHHHHHcccc----cc-CCc-EEEEEEECCChHHHHHHH----HHHHH-------HhCCCEE
Confidence            7999999999999999999999999863    12 122 456679999999998885    55665       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|..++++|||+|++|.+++|+++||   .+|+|+||+++|++
T Consensus        66 ih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~Lp~~~l~~  123 (215)
T PRK13197         66 ICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVEDGP---AAYFSTLPIKAMVK  123 (215)
T ss_pred             EEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999998   47999999999864

>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

Probab=99.98  E-value=2e-32  Score=225.00  Aligned_cols=121  Identities=26%  Similarity=0.315  Sum_probs=107.1

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||++++.||||++|++|.+... .+.     .+...+|||+|+.+.+.+    +++|+       +++||+|
T Consensus         2 ~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~-~~~-----~i~~~~lpv~y~~~~~~~----~~~~~-------~~~pd~v   64 (194)
T cd00501           2 KVLVTGFGPFGGEPVNPSWEAVKELPKLIL-GGA-----EVVGLELPVVFQKAVEVL----PELIE-------EHKPDLV   64 (194)
T ss_pred             EEEEEecCCCCCCCCChHHHHHHhcccccc-CCc-----EEEEEEcCccHHHHHHHH----HHHHH-------HhCCCEE
Confidence            799999999999999999999999986422 121     356679999999998885    66776       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+||++|+|.++++.||++|++|.+++|.++||   .+|+|+||+++|+.
T Consensus        65 lhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~---~~~~t~lp~~~l~~  122 (194)
T cd00501          65 IHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGP---AAYFSTLPVKAIVK  122 (194)
T ss_pred             EEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCC---CeeeecCCHHHHHH
Confidence            99999999999999999999998899999999999999999987   57999999999863

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.

>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=99.70  E-value=3.7e-17  Score=131.63  Aligned_cols=116  Identities=20%  Similarity=0.247  Sum_probs=94.2

Q ss_pred             EEEEEcc-cCCCCCCCChHHHHH--HHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937           44 TIHVTGF-KKFHGVSENPTETIV--SNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR  120 (185)
Q Consensus        44 ~ILITGF-gPF~g~~~NPS~~iv--~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P  120 (185)
                      .++|||| |||.+.  |||..++  .+|.+.    +  ... .+ ...+|+||+.|.+.+    +++|.        .+|
T Consensus        25 ~~vvTgF~~~fe~~--nps~~viv~DEL~k~----~--~~~-~l-~~K~~~sYe~V~ekv----pel~~--------~~~   82 (166)
T PF06162_consen   25 KVVVTGFDGPFEGE--NPSSAVIVLDELEKE----G--EDK-IL-FFKMEVSYEEVDEKV----PELWK--------EQP   82 (166)
T ss_pred             ceeEEecCCCccCC--CCCcceeeHHHhhcC----C--ccc-ee-eeeccchHHHHHHHh----HHHHh--------hCC
Confidence            5789999 599775  5665555  999863    2  111 12 239999999999985    88896        469


Q ss_pred             cEEEEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       121 dlvIHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      |++||+|.|+..++|++||.|+-. +|..+|.+|+.|.+.++-.++-  ...+.|.++.+.|+.
T Consensus        83 ~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~~~--e~~lkt~vdce~Lvk  143 (166)
T PF06162_consen   83 DFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCESE--ETVLKTFVDCEELVK  143 (166)
T ss_pred             CeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccCcc--ccccccccCHHHHHH
Confidence            999999999999999999999995 7999999999999999965554  368999999998863

>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.6e-09  Score=87.39  Aligned_cols=118  Identities=16%  Similarity=0.142  Sum_probs=89.9

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|+.+..+||-|...||+|.++++|.+.   .+....+    .-..-.+|+.|.+.+    ++.|.       .+. ...
T Consensus        21 kvv~v~~~p~~g~~~~~aviv~dEl~k~---~~~s~~l----~~~~~~sy~~v~~~i----~e~~~-------~~~-~~a   81 (213)
T KOG4755|consen   21 KVVTVFDFPFFGKQPSPAVIVLDELVKK---GGVSKYL----CFKMCTSYETVDEII----LELWE-------EHL-QSA   81 (213)
T ss_pred             EEEEeccCCccCccCCchhhhHHHHHHc---CCceecc----eecceechhhHhHHH----HHhhc-------cce-eEE
Confidence            3555555565554449999999999863   1121221    113333999999884    77776       444 899


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhh
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLC  183 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~  183 (185)
                      ||+|.++...+|.+|+.|++. +|..-|.+|++|.++++.-++|+  ...+|..+...++
T Consensus        82 Ihl~sh~~knti~i~~~af~~-gy~~~d~~g~vp~~nkv~~~~~d--~~~~s~i~c~~vv  138 (213)
T KOG4755|consen   82 IHLGSHSQKNTIQIEQSAFSS-GYTQKDKCGKVPEGNKVKCDGPD--TGGRSCINCEIVV  138 (213)
T ss_pred             EEecccccCcEEEEEEecccC-CccchhhcccccCCceeEecccc--ccccccccHHHHH
Confidence            999999999999999999995 78999999999999999999984  6888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1iof_A	208	X-Ray Crystalline Structures Of Pyrrolidone Carboxy		2e-06
2df5_A	213	Crystal Structure Of Pf-Pcp(1-204)-C Length = 213		2e-06
1x12_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		2e-06
2eo8_A	208	Crystal Structure Of A Mutant Pyrrolidone Carboxyl		2e-06
1ioi_A	208	X-Ray Crystalline Structures Of Pyrrolidone Carboxy		2e-06
1z8w_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		2e-06
1z8x_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		2e-06
1z8t_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		2e-06
1x10_A	208	Structure Of Mutant Pyrrolidone Carboxyl Peptidase		2e-06
1iu8_A	206	The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl		6e-05
1a2z_A	220	Pyrrolidone Carboxyl Peptidase From Thermococcus Li		4e-04

>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl Peptidase (A199p) From P. Furiosus Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a) From A Hyperthermophile, Pyrococcus Furiosus Length = 208

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47  VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
           VTGF+ F G   NPTE I  +L           G+ +G   +      G V P+      
Sbjct: 5   VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
            + EK  E       I +H G+  G +  +IE+ AVN    R PD  G K +  PI P 
Sbjct: 50  EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106

>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           I +TGF+ F G  +NPT  IV  L E + +       ++G   IL  +   A   L + L
Sbjct: 3   ILLTGFEPFGGDDKNPTMDIVEALSERIPE-------VVGE--ILPVSFKRAREKLLKVL 53
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
                       + R  I ++ G+  G T  ++E+ AVN    R PD  G +P+  PI
Sbjct: 54  D-----------DVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPI 100

>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           + +TGF+ F G S+NPTE I     +Y  +K +   ++ G   +L  +   A   L + L
Sbjct: 4   VLITGFEPFGGDSKNPTEQIA----KYFDRKQIGNAMVYG--RVLPVSVKRATIELKRYL 57
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKP 157
           +    E           I ++ G+    +   +E+ AVN    R PD  G++P
Sbjct: 58  EEIKPE-----------IVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQP 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	5e-19
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	4e-18
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	2e-17
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	3e-16
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	1e-15
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	3e-15
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215

 Score = 79.9 bits (196), Expect = 5e-19
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 42  AVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLY 101
           A+ I VTGF  F   + NP+   V+ L + +    +           L T+       + 
Sbjct: 3   AMHILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTID-------KLKLPTSFKKVDNIIN 55

Query: 102 QTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVP 161
           +TL S           +   + +  G   G      E+ A+N    R PD   ++P    
Sbjct: 56  KTLAS-----------NHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQA 104

Query: 162 IFPADGEI 169
           I       
Sbjct: 105 IHLDGAPA 112

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206

 Score = 77.2 bits (189), Expect = 4e-18
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQ 102
           + I +TGF+ F G  +NPT  IV  L E +               IL  +   A   L +
Sbjct: 1   MKILLTGFEPFGGDDKNPTMDIVEALSERI---------PEVVGEILPVSFKRAREKLLK 51

Query: 103 TLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
            L              R  I ++ G+  G T  ++E+ AVN    R PD  G +P+  PI
Sbjct: 52  VLDDV-----------RPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPI 100

Query: 163 FPADGE 168
                 
Sbjct: 101 VEGGPA 106

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223

 Score = 75.7 bits (185), Expect = 2e-17
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
            + +TGF  F G + NP+   V  L    +      G        + T  + ++A L + 
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRLNGAAE------GPASIVSEQVPTVFYKSLAVLREA 57

Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
           ++             +  I +  G   G  +   E+ A+N    R PD  G +P    I 
Sbjct: 58  MKK-----------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDIS 106

Query: 164 P 164
            
Sbjct: 107 Q 107

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
            + +TGF+ F G S+NPTE I     +Y  +K +   ++ G   +L  +   A   L + 
Sbjct: 3   KVLITGFEPFGGDSKNPTEQIA----KYFDRKQIGNAMVYGR--VLPVSVKRATIELKRY 56

Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
           L+             +  I ++ G+    +   +E+ AVN    R PD  G++P    I 
Sbjct: 57  LEEI-----------KPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIE 105

Query: 164 P 164
            
Sbjct: 106 E 106

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 43  VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQ 102
           + + VTGF+ F G   NPTE I  +L           G+ +G   +             +
Sbjct: 1   MKVLVTGFEPFGGEKINPTERIAKDLD----------GIKIGDAQVFGRVLPVVFGKAKE 50

Query: 103 TLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
            L+  + E           I +H G+  G +  +IE+ AVN    R PD  G K +  PI
Sbjct: 51  VLEKTLEEIK-------PDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPI 103

Query: 163 FP 164
            P
Sbjct: 104 VP 105

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215

 Score = 69.9 bits (170), Expect = 3e-15
 Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
           T+ +TGF  F G S NP   +  +L E            +G   I+              
Sbjct: 3   TVLLTGFDPFGGESINPAWEVAKSLHEKT----------IGEYKIISKQVPTVFHKSISV 52

Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
           L+  I E             +  G   G     IE+ A+N    R  D  G +P  VP+ 
Sbjct: 53  LKEYIEEL-------APEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVV 105

Query: 164 PADGEI 169
                 
Sbjct: 106 EEGPAA 111

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           I VTGF+ F  +  NP++ ++  L   +  K + K ++                   + L
Sbjct: 2   ILVTGFEPFGSLEHNPSQALLDLLPSEVDGKPLRKAVLPVD---------------AEAL 46

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
             A+ +   E         +H G+        +E+ AVN   F  PD  G   + +PI P
Sbjct: 47  GEALEDLHRE----GPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVP 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 58/196 (29%)

Query: 9   CRCLDI-D----------FNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVS 57
             CL +            FN      L    +R   V       A T H++       ++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSC-KIL--LTTRFKQVTDFLSA-ATTTHISLDHHSMTLT 299

Query: 58  ENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESAN 117
            +  ++++    +  + + +P+ ++  +             P      S I E   +   
Sbjct: 300 PDEVKSLLLKYLD-CRPQDLPREVLTTN-------------PR---RLSIIAESIRDGLA 342

Query: 118 SRRIIWVHFGVNSGATRFAIEQQAVNEATFRC--PDEMGWKP--QKVPIFPADGEI---- 169
                W H   +        +   + E++     P E   +    ++ +FP    I    
Sbjct: 343 -TWDNWKHVNCD--------KLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTIL 391

Query: 170 -------SRVREVEMI 178
                      +V ++
Sbjct: 392 LSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	100.0
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	100.0
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	100.0
4hps_A	228	Pyrrolidone-carboxylate peptidase; structural geno	100.0
4gxh_A	216	Pyrrolidone-carboxylate peptidase; structural geno	100.0
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	100.0
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	100.0
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	100.0
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	100.0

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0

Probab=100.00  E-value=2.5e-36  Score=252.21  Aligned_cols=123  Identities=19%  Similarity=0.187  Sum_probs=108.8

Q ss_pred             CceEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937           41 PAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR  120 (185)
Q Consensus        41 ~~~~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P  120 (185)
                      +.++|||||||||+++++||||+++++|++.+.      +. .+...+|||+|+.+.+.+    +++|+       +++|
T Consensus         2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~-~i~~~~lPv~~~~~~~~l----~~~i~-------~~~P   63 (215)
T 3giu_A            2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDIIG------TH-TIDKLKLPTSFKKVDNII----NKTLA-------SNHY   63 (215)
T ss_dssp             --CEEEEEEECCCTTCSCCHHHHHHHHSCSEET------TE-EEEEEEECSCHHHHHHHH----HHHHH-------HSCC
T ss_pred             CCcEEEEEecCCCCCCCCChHHHHHHHhccccC------Cc-EEEEEEeceehHhHHHHH----HHHHH-------HhCC
Confidence            345899999999999999999999999987421      22 456779999999998875    77777       7899


Q ss_pred             cEEEEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       121 dlvIHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      |+|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        64 d~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~stLpv~~iv~  124 (215)
T 3giu_A           64 DVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGA---PAYFSNLPVKAMTQ  124 (215)
T ss_dssp             SEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCTTSC---SEEECCSCHHHHHH
T ss_pred             CEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccCCCc---cccccCCCHHHHHH
Confidence            99999999999999999999999989999999999999999999997   57999999999874

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A

Probab=100.00  E-value=7.8e-36  Score=250.48  Aligned_cols=121  Identities=21%  Similarity=0.216  Sum_probs=108.2

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||+++++|++.+.      +...+...+|||+|..+.+.+    +++|+       +.+||+|
T Consensus         4 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~~~i~~~~lPv~y~~~~~~l----~~~i~-------~~~Pd~V   66 (223)
T 3ro0_A            4 KVLLTGFDPFGGETVNPSWEAVKRLNGAAE------GPASIVSEQVPTVFYKSLAVL----REAMK-------KHQPDII   66 (223)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHHTTTCEE------TTEEEEEEEECSCTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeCCCCCCCCCChHHHHHHHhccccC------CCcEEEEEEeeeEehhHHHHH----HHHHH-------HhCCCEE
Confidence            899999999999999999999999997432      112456679999999998875    67777       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        67 ihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp---~a~~stLpv~~~v~  124 (223)
T 3ro0_A           67 ICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGP---AAYWTGLPIKRIVE  124 (223)
T ss_dssp             EEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred             EEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCC---ceeecCCCHHHHHH
Confidence            99999999999999999999989999999999999999999997   57999999999874

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}

Probab=100.00  E-value=9e-36  Score=248.75  Aligned_cols=121  Identities=23%  Similarity=0.267  Sum_probs=108.1

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||+++++|++.+.      +...+...+|||+|.++.+.+    +++|+       +++||+|
T Consensus         3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~~~i~~~~lPv~y~~~~~~l----~~~~~-------~~~Pd~V   65 (215)
T 3lac_A            3 TVLLTGFDPFGGESINPAWEVAKSLHEKTI------GEYKIISKQVPTVFHKSISVL----KEYIE-------ELAPEFI   65 (215)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHTTTTCEE------TTEEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEecCCCCCCCCChHHHHHHHhccccC------CCcEEEEEEEeeEhHHHHHHH----HHHHH-------hhCCCeE
Confidence            899999999999999999999999987322      112456779999999998875    67777       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        66 ihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp---~~~~s~Lpv~~~v~  123 (215)
T 3lac_A           66 ICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGP---AAYWSTLPMKAIVK  123 (215)
T ss_dssp             EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred             EEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcCCCC---ceeecCCCHHHHHH
Confidence            99999999999999999999989999999999999999999998   57999999999874

>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A

Probab=100.00  E-value=6e-36  Score=251.90  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=107.9

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|++|++.    .+ .+ ..+...+|||+|..+.+.|    +++|+       +.+||+|
T Consensus        25 ~VLvTGF~PF~g~~~NPS~~~v~~L~~~----~i-~~-~~i~~~~lPv~y~~~~~~l----~~~i~-------~~~Pd~V   87 (228)
T 4hps_A           25 TILVTAFDPFGGEAINPSWEAIKPLQGS----QV-FG-ANIEICQIPCIFDTSLEHL----YAAVD-------KYQPELV   87 (228)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHGGGTTC----EE-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeccCCCCCCCChHHHHHHHhcCc----CC-CC-cEEEEEEcceEeHHHHHHH----HHHHH-------hhCCCEE
Confidence            8999999999999999999999999863    11 12 2456779999999998875    66777       6799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++|+.|+|||+|+|..+|++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        88 ihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp---~a~~stLpvk~~v~  145 (228)
T 4hps_A           88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGP---AAYFSRLPIKTMVN  145 (228)
T ss_dssp             EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC---SEEECCSCHHHHHH
T ss_pred             EEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCC---ceeeeCCCHHHHHH
Confidence            99999999999999999999889999999999999999999997   57999999999874

>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}

Probab=100.00  E-value=2.1e-35  Score=246.68  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=107.5

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      ||||||||||+++++||||++|++|++.    .+ .+ ..+....|||+|+.+.+.|    .++|+       +++||+|
T Consensus         4 tVLvTGF~PF~~~~~NPS~~~v~~L~~~----~~-~~-~~i~~~~lPv~~~~~~~~l----~~~i~-------~~~Pd~v   66 (216)
T 4gxh_A            4 TILVTAFDPFGGEAINPSWEAIKPLQGS----QV-FG-ANIEICQIPCIFDTSLEHL----YAAVD-------KYQPELV   66 (216)
T ss_dssp             EEEEEEECCCTTSSSCHHHHHHGGGTTC----EE-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEeeccCCCCCCCChhHHHHHhhhcc----cC-CC-ceEEEEecCccHHHHHHHH----HHHHH-------hhCCCEE
Confidence            8999999999999999999999999752    11 12 2456779999999998875    66777       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++|+.|++||+|+|..++++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        67 i~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp---~~~~t~Lpv~~iv~  124 (216)
T 4gxh_A           67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGP---AAYFSRLPIKTMVN  124 (216)
T ss_dssp             EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTCC---SEEECCSCHHHHHH
T ss_pred             EEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccCCCc---hheecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999998   57999999999874

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1

Probab=100.00  E-value=2.1e-35  Score=245.09  Aligned_cols=118  Identities=28%  Similarity=0.354  Sum_probs=107.1

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|++.+         ..+....|||+|..+.+.|    +++|+       +++||+|
T Consensus         2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i---------~~i~~~~lPv~~~~~~~~l----~~~~~-------~~~Pd~v   61 (206)
T 1iu8_A            2 KILLTGFEPFGGDDKNPTMDIVEALSERI---------PEVVGEILPVSFKRAREKL----LKVLD-------DVRPDIT   61 (206)
T ss_dssp             CEEEEEECCCTTCSCCHHHHHHHHHHHHC---------TTEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeecCCCCCCCCcHHHHHHHhccce---------eEEEEEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence            59999999999999999999999999853         2456679999999998875    66776       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|++||+|+|..++++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        62 i~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~Lpi~~iv~  119 (206)
T 1iu8_A           62 INLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGP---AAYFATIPTREIVE  119 (206)
T ss_dssp             EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC---SEEECCSCHHHHHH
T ss_pred             EEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999874

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A

Probab=100.00  E-value=3.3e-35  Score=244.14  Aligned_cols=121  Identities=26%  Similarity=0.319  Sum_probs=107.6

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|++..    + .+ ..+...+|||+|..+.+.+    +++|+       +++||+|
T Consensus         2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~-~~i~~~~lPv~~~~~~~~l----~~~~~-------~~~pd~v   64 (208)
T 1x10_A            2 KVLVTGFEPFGGEKINPTERIAKDLDGIK----I-GD-AQVFGRVLPVVFGKAKEVL----EKTLE-------EIKPDIA   64 (208)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeecCCCCCCCChHHHHHHHhhccC----C-CC-eEEEEEEEeeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence            69999999999999999999999999741    1 12 2456779999999998875    66776       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++|+.|++||+|+|..++++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        65 i~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttlpi~~iv~  122 (208)
T 1x10_A           65 IHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP---TAYFSTLPIKKIMK  122 (208)
T ss_dssp             EEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred             EEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   47999999999874

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1

Probab=100.00  E-value=5.7e-35  Score=244.72  Aligned_cols=121  Identities=21%  Similarity=0.289  Sum_probs=107.6

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|++|++..    + .+ ..+....|||+|..+.+.|    +++|+       +++||+|
T Consensus         3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~-~~i~~~~lPv~~~~~~~~l----~~~i~-------~~~Pd~V   65 (220)
T 1a2z_A            3 KVLITGFEPFGGDSKNPTEQIAKYFDRKQ----I-GN-AMVYGRVLPVSVKRATIEL----KRYLE-------EIKPEIV   65 (220)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TT-EEEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhhccc----C-CC-eEEEEEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence            69999999999999999999999999741    1 12 2456779999999998875    66776       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|+|++++.|++||+|+|..++++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        66 i~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttLpi~~iv~  123 (220)
T 1a2z_A           66 INLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAP---LAYMATLPVRAITK  123 (220)
T ss_dssp             EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTSC---SEEECCSCHHHHHH
T ss_pred             EEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   47999999999874

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=4.3e-35  Score=240.87  Aligned_cols=119  Identities=22%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||+++++|++.+.      +. .+...+|||+ +.+.+.|    +++|+       +++||+|
T Consensus         1 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~-~i~~~~lPv~-~~~~~~l----~~~~~-------~~~pd~v   61 (192)
T 2ebj_A            1 MILVTGFEPFGSLEHNPSQALLDLLPSEVD------GK-PLRKAVLPVD-AEALGEA----LEDLH-------REGPKAV   61 (192)
T ss_dssp             CEEEEEECCCTTCSCCHHHHGGGGSCSEET------TE-EEEEEEECSC-HHHHHHH----HHHHH-------TTCCSEE
T ss_pred             CEEEEeecCCCCCCCChHHHHHHHhhcccC------Cc-EEEEEEeccc-ccHHHHH----HHHHH-------HhCCCEE
Confidence            599999999999999999999999997532      22 4566789999 9998875    77787       7799999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|++||+|+|..+|++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        62 i~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~lp~~~iv~  119 (192)
T 2ebj_A           62 LHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGP---LALPARFPVKPVLA  119 (192)
T ss_dssp             EEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCSSTTSC---SEEECBSCHHHHHH
T ss_pred             EEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999989999999999999999999997   57999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1iofa_	208	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	2e-21
d1auga_	210	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	3e-19
d1a2za_	220	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	2e-17
d1iu8a_	206	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	9e-17

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 84.7 bits (209), Expect = 2e-21
 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           + VTGF+ F G   NPTE I  +L           G+ +G   +             + L
Sbjct: 3   VLVTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVFGRVLPVVFGKAKEVL 52

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
           +  + E        +  I +H G+  G +  +IE+ AVN    R PD  G K +  PI P
Sbjct: 53  EKTLEE-------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVP 105

Query: 165 ADGE 168
               
Sbjct: 106 GAPT 109

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score = 79.3 bits (195), Expect = 3e-19
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           + +TGF  F G + NP+   V  L           G   G  +I+              L
Sbjct: 5   VLLTGFDPFGGETVNPSWEAVKRL----------NGAAEGPASIVSEQVPTVFYKSLAVL 54

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
           + AI +           I +  G   G  +   E+ A+N    R PD  G +P    I  
Sbjct: 55  REAIKKHQ-------PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQ 107

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 74.3 bits (182), Expect = 2e-17
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 44  TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
            + +TGF+ F G S+NPTE I         +K +   ++ G   +L  +   A   L + 
Sbjct: 3   KVLITGFEPFGGDSKNPTEQIAKYF----DRKQIGNAMVYGR--VLPVSVKRATIELKRY 56

Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
           L+             +  I ++ G+    +   +E+ AVN    R PD  G++P    I 
Sbjct: 57  LEE-----------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIE 105

Query: 164 PADGEISR 171
             D  ++ 
Sbjct: 106 E-DAPLAY 112

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.4 bits (177), Expect = 9e-17
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 20/120 (16%)

Query: 45  IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
           I +TGF+ F G  +NPT  IV  L          + +      IL  +   A   L + L
Sbjct: 3   ILLTGFEPFGGDDKNPTMDIVEAL---------SERIPEVVGEILPVSFKRAREKLLKVL 53

Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFP 164
                         R  I ++ G+  G T  ++E+ AVN    R PD  G +P+  PI  
Sbjct: 54  DD-----------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVE 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1a2za_	220	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1iofa_	208	Pyrrolidone carboxyl peptidase (pyroglutamate amin	100.0
d1iu8a_	206	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.98
d1auga_	210	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.97

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.1e-34  Score=239.14  Aligned_cols=121  Identities=21%  Similarity=0.288  Sum_probs=107.5

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      ||||||||||++++.||||++|+.|++.    .+ .+. .+...+|||+|+++.+.+    .++|+       +.+||+|
T Consensus         3 kILvTGF~PF~~~~~NPS~~iv~~L~~~----~~-~~~-~i~~~~LPV~~~~~~~~l----~~~~~-------~~~pd~v   65 (220)
T d1a2za_           3 KVLITGFEPFGGDSKNPTEQIAKYFDRK----QI-GNA-MVYGRVLPVSVKRATIEL----KRYLE-------EIKPEIV   65 (220)
T ss_dssp             EEEEEEECCCTTCSCCHHHHHHHHHTTC----EE-TTE-EEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEecCCCCCCCCChHHHHHHHhccc----CC-CCc-eEEEEEcceeHHHHHHHH----HHHHH-------hCCceEE
Confidence            8999999999999999999999999852    12 122 456779999999998885    66776       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+|||+|+|..++++|||+|++|.+++|.++||   .+|+|+||+++|++
T Consensus        66 i~~G~a~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttlp~~~i~~  123 (220)
T d1a2za_          66 INLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAP---LAYMATLPVRAITK  123 (220)
T ss_dssp             EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTSC---SEEECCSCHHHHHH
T ss_pred             EEEeecCCCceeEEEEEEEeCCCCccccccCCccCCCCccCCCC---ceeecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   47999999999764

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.5e-34  Score=234.74  Aligned_cols=121  Identities=26%  Similarity=0.319  Sum_probs=107.6

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      ||||||||||+++++||||.+|++|++.    .+ .+ ..+...+|||+|+++.+.+    +++|+       +++||+|
T Consensus         2 kILvTGF~pF~~~~~NpS~~vv~~L~~~----~~-~~-~~i~~~~LpV~~~~~~~~l----~~l~~-------~~~pd~v   64 (208)
T d1iofa_           2 KVLVTGFEPFGGEKINPTERIAKDLDGI----KI-GD-AQVFGRVLPVVFGKAKEVL----EKTLE-------EIKPDIA   64 (208)
T ss_dssp             EEEEEEECCCSSCSCCHHHHHHHHHTTC----EE-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeeCCCCCCCCChHHHHHHhcccC----CC-CC-ceEEEEecceeHHHHHHHH----HHHHH-------hCCCcEE
Confidence            8999999999999999999999999852    12 12 2456789999999999885    67777       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+||++|+|..++++||++|++|.+++|+++||   ..|+|+||+++|++
T Consensus        65 ih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~---~~~~t~lp~~~l~~  122 (208)
T d1iofa_          65 IHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP---TAYFSTLPIKKIMK  122 (208)
T ss_dssp             EEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred             EEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCCccCCCc---ceeecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   57999999999764

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.98  E-value=1.5e-33  Score=231.44  Aligned_cols=118  Identities=28%  Similarity=0.335  Sum_probs=106.5

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||.+++.|++.    +.     .+...+|||+|+++.+.+    .++|+       +.+||+|
T Consensus         2 kILvTGF~pF~~~~~NpS~~i~~~L~~~----~~-----~i~~~~LpV~~~~~~~~~----~~~~~-------~~~pd~v   61 (206)
T d1iu8a_           2 KILLTGFEPFGGDDKNPTMDIVEALSER----IP-----EVVGEILPVSFKRAREKL----LKVLD-------DVRPDIT   61 (206)
T ss_dssp             CEEEEEECCCTTCSCCHHHHHHHHHHHH----CT-----TEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEeeCCCCCCCCChHHHHHHHhhcc----cC-----eEEEEEeeccHHHHHHHH----HHHHH-------hcCCcEE
Confidence            7999999999999999999999999864    12     346679999999999885    66776       6789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+||++|+|..+|++||++|++|.+++|+++||   ..|+|+||+++|+.
T Consensus        62 ih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~---~~~~ttlp~~~i~~  119 (206)
T d1iu8a_          62 INLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGP---AAYFATIPTREIVE  119 (206)
T ss_dssp             EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC---SEEECCSCHHHHHH
T ss_pred             EEEEecCCccceeeEEEEEecCCCccccCCCCCCCCCcccCCCc---cceecCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   47999999998763

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=99.97  E-value=5.9e-33  Score=228.33  Aligned_cols=121  Identities=21%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937           44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW  123 (185)
Q Consensus        44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv  123 (185)
                      +|||||||||+++++||||++|+.|+...    . .+ ..+...+|||+|+++.+.+    .++|+       ..+||+|
T Consensus         4 rILvTGF~PF~~~~~NpS~~vv~~L~~~~----~-~~-~~i~~~~lpV~~~~~~~~~----~~~~~-------~~~p~~v   66 (210)
T d1auga_           4 KVLLTGFDPFGGETVNPSWEAVKRLNGAA----E-GP-ASIVSEQVPTVFYKSLAVL----REAIK-------KHQPDII   66 (210)
T ss_dssp             EEEEEEECCCSSCSCCHHHHHHHTTTTCE----E-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred             EEEEEccCCCCCCCcChHHHHHHHhcccc----C-CC-cEEEEEEccccHHHHHHHH----HHHHH-------hCCCcEE
Confidence            79999999999999999999999998531    1 11 2456789999999998875    55665       5789999


Q ss_pred             EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937          124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA  184 (185)
Q Consensus       124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~  184 (185)
                      ||+|++++++.|+||++|+|..++++||++|++|.+++|.++||   .+|+|+||+++|.+
T Consensus        67 ih~G~~~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g~---~~~~t~lp~~~l~~  124 (210)
T d1auga_          67 ICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGP---AAYWTGLPIKRIVE  124 (210)
T ss_dssp             EEEEECTTCSSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred             EEEEecCCcceEEeeeEeeccCcccccccCCCCCCCCcccCCCC---ceeEcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997   58999999998753