Citrus Sinensis ID: 029958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEcccEEEEEEccccccccccccEEEEEEEEccccccccEEEEEEccccEEEcccccEEEEEEcccEEEEEEccccEEEEEHHHHHccccccccccccccEEEEEEcccHHHHHHHHccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccHcccccccccHHHHHHHHHEEHccccccccEEEEEccccEEEEEEcccccEEEccccEEEEEEEEccccccccEEccccccccEEEcccccEEEEEccccEEEEEEcEccEEEEEcHHHHHcHHHHHccccccEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MQDDEEELHKlllpnvhdlpltppsaidfnfvayfapdflkpghdqyvyRHANGlcviglapthvafkdeggitavdfnvgksdrsgfkvtgkrkknaqhfesntavckvctnndsyivRCCVKGSLLEVNNRlikqpgllnssadreGYIAIIMPKPADWLKIKSSLLGLEDYKRKreecfgss
Flexible Loop (DISEMBL)
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITavdfnvgksdrsgfkvtgkrkknaqhfesntavckvctnnDSYIVRCCVKGSLLEVNNRLikqpgllnssadREGYIAIImpkpadwlKIKSsllgledykrkreecfgss
Low Complexity Region (SEG)
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
Disordered region (IsUnstruct)
**********LLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK*****************HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDY***********
Disordered Region (DISOPRED)
************LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVG*******************FESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECF***
Disordered Region (DISEMBL)
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRS*************HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
Disordered Region (DISPRO)
****EEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREECFGSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q6GR35	183	Protein FAM206A OS=Xenopu	N/A	no	0.837	0.846	0.329	4e-22
Q80ZQ9	193	Protein FAM206A OS=Mus mu	yes	no	0.827	0.792	0.326	3e-21
Q29S16	187	Protein FAM206A OS=Bos ta	yes	no	0.864	0.855	0.321	4e-20
Q1LU93	177	Protein FAM206A OS=Danio	yes	no	0.821	0.858	0.329	6e-20
Q5RFS0	181	Protein FAM206A OS=Pongo	yes	no	0.821	0.839	0.322	1e-19
Q9NX38	181	Protein FAM206A OS=Homo s	yes	no	0.821	0.839	0.322	1e-19
Q28G67	183	Protein FAM206A OS=Xenopu	yes	no	0.821	0.830	0.303	4e-19
Q54TD9	175	FAM206 family protein OS=	yes	no	0.697	0.737	0.370	4e-19
Q9VFR1	214	FAM206 family protein CG9	yes	no	0.918	0.794	0.335	1e-17
Q5ZHW7	173	Protein FAM206A OS=Gallus	yes	no	0.783	0.838	0.304	2e-16

>sp|Q6GR35|F206A_XENLA Protein FAM206A OS=Xenopus laevis GN=fam206a PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 21  LTPPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN 79
           L  PS +D  F  ++ PD   KP  D  + +H+N +C+I LA  H   ++E  I ++ + 
Sbjct: 8   LAFPSVVDRYFTRWYKPDIKGKPCEDHCILQHSNRICIITLAECHPLLQNEKTIKSISYQ 67

Query: 80  VGKS-DRSGFKVTGKRKKNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQ 137
           +  +  R   KV+GK K+ AQ       +C++  T+ + Y +  C++G LLEVN  +++ 
Sbjct: 68  ISANCSRLQNKVSGKSKRGAQFLTELAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQN 127

Query: 138 PGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           PGLL      EGYIA+++PK  +   I   LL   +Y+
Sbjct: 128 PGLLKEKPSTEGYIAVVLPKFEESKTITEGLLSQREYE 165

Xenopus laevis (taxid: 8355)

>sp|Q80ZQ9|F206A_MOUSE Protein FAM206A OS=Mus musculus GN=Fam206a PE=2 SV=2

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 23  PPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVG 81
           PPS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    I  + + + 
Sbjct: 24  PPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKAIQRISYQIS 83

Query: 82  KS-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPG 139
            +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EVN  ++ QP 
Sbjct: 84  NNCSRLENKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHQPS 143

Query: 140 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           LL      EGYIA+++PK  +   +   LL  + Y+
Sbjct: 144 LLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYE 179

Mus musculus (taxid: 10090)

>sp|Q29S16|F206A_BOVIN Protein FAM206A OS=Bos taurus GN=FAM206A PE=2 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 16  VHDLPLTP--PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGG 72
           V DL   P  PS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    
Sbjct: 9   VADLAPEPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKT 68

Query: 73  ITAVDFNVGKS-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEV 130
           I ++ + +  +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EV
Sbjct: 69  IKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEV 128

Query: 131 NNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           N  ++ +P +L      EGYIA+++PK  +   I   LL  ++Y+
Sbjct: 129 NENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKEYE 173

Bos taurus (taxid: 9913)

>sp|Q1LU93|F206A_DANRE Protein FAM206A OS=Danio rerio GN=fam206a PE=2 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 24  PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
           PS ID  F  ++  D   KP  D  + +H+N +CVI LA +H  F++   I  +++ +  
Sbjct: 10  PSVIDRYFTRWYRTDLKGKPCEDHCILQHSNRICVITLAESHPIFQNGRKIKNINYQISD 69

Query: 83  S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
              R   KV+GK K+  Q       +C++ CT+   + +  C++G LLEVN  ++ +P L
Sbjct: 70  GCSRLKNKVSGKSKRGGQFLTEFAPLCRITCTDEQEFTIFSCIRGRLLEVNEVILNKPDL 129

Query: 141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           L      EGYIA+I+PK  +   +   LL  E Y+
Sbjct: 130 LMEKPSTEGYIAVILPKFEESKSVTEGLLTREQYE 164

Danio rerio (taxid: 7955)

>sp|Q5RFS0|F206A_PONAB Protein FAM206A OS=Pongo abelii GN=FAM206A PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 24  PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
           PS +D  F  ++ PD   K   D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct: 13  PSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72

Query: 83  S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
           +  R   KV+GK K+ AQ       +CK+ C++ + Y V  CV+G L+EVN  ++ +P +
Sbjct: 73  NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPSI 132

Query: 141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           L      EGYIA+++PK  +   I   LL  + Y+
Sbjct: 133 LQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167

Pongo abelii (taxid: 9601)

>sp|Q9NX38|F206A_HUMAN Protein FAM206A OS=Homo sapiens GN=FAM206A PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 24  PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
           PS +D  F  ++ PD   K   D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct: 13  PSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72

Query: 83  S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
           +  R   KV+GK K+ AQ       +CK+ C++ + Y V  CV+G L+EVN  ++ +P +
Sbjct: 73  NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPSI 132

Query: 141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           L      EGYIA+++PK  +   I   LL  + Y+
Sbjct: 133 LQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167

Homo sapiens (taxid: 9606)

>sp|Q28G67|F206A_XENTR Protein FAM206A OS=Xenopus tropicalis GN=fam206a PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 24  PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
           PS +D  F  ++  D   KP  D  + +H+N +C+I LA  H   ++   I  + + +  
Sbjct: 12  PSVVDRYFKRWYKSDVKGKPCEDHCILQHSNRICIITLAECHPLLQNGKTIKTISYQISA 71

Query: 83  S-DRSGFKVTGKRKKNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
           +  R   KV+GK K+ AQ    +  +C++  T+ + Y +  C++G LLEVN  +++ P L
Sbjct: 72  NCSRLQNKVSGKSKRGAQFLTEHAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQNPEL 131

Query: 141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           L      EGYIA+++PK  +   +   LL  ++Y+
Sbjct: 132 LKEKPSTEGYIAVVLPKFEESKTVTEGLLSQQEYE 166

Xenopus tropicalis (taxid: 8364)

>sp|Q54TD9|F206_DICDI FAM206 family protein OS=Dictyostelium discoideum GN=DDB_G0281837 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 6/135 (4%)

Query: 45  DQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESN 104
           DQYV +H N L VIG+AP+H   + E  I+ ++F   K +    +V+G RK      +SN
Sbjct: 27  DQYVNQHTNELAVIGVAPSHPVLQQE--ISKIEF---KENAINNEVSGVRKTGGFKLQSN 81

Query: 105 TAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLK 163
           T +C + C+N   Y +R C+KG LLE+N  LI  P LL ++    G++AI+ P   D   
Sbjct: 82  TILCVITCSNGKEYFLRSCIKGKLLEINKELINNPSLLKTNHATSGFLAIVEPMIKDKFM 141

Query: 164 IKSSLLGLEDYKRKR 178
               L+  E+Y + R
Sbjct: 142 ENPGLIKFEEYHKLR 156

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VFR1|F206_DROME FAM206 family protein CG9288 OS=Drosophila melanogaster GN=CG9288 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 3   DDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAP 62
           +++E   KL+ P         PS +D  F  Y+   + K      V  H+N +C+I LAP
Sbjct: 17  EEQEICGKLVAPITDSFQEDYPSVVDRFFTRYY---YFKGDVPYQVLYHSNRICLICLAP 73

Query: 63  THVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCT-NNDSYIVRC 121
            H A     GI++V+F++G  DRS   V GK KK     ++ + +  + T N  +Y V  
Sbjct: 74  EHPALAQ--GISSVNFDIGNVDRSQNVVKGKGKKGGMILQAESTLALLTTANGGTYKVPS 131

Query: 122 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRK 177
           C++G L+EVN  ++++P LL    +  GY AI++PK  +   IK+SLL  E Y+ +
Sbjct: 132 CIRGKLVEVNTAIVEEPKLLEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEER 187

Drosophila melanogaster (taxid: 7227)

>sp|Q5ZHW7|F206A_CHICK Protein FAM206A OS=Gallus gallus GN=FAM206A PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 31  FVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKS-DRSGF 88
           F  ++  D   +P  D  V +H+N +CVI LA  H   +    IT++++ +  +  R   
Sbjct: 13  FTRWYKADVKGRPCEDFCVLQHSNRICVITLAEAHPLLQPGKTITSINYQISPNCSRLQN 72

Query: 89  KVTGKRKKNAQHFESNTAVCKVCTNN-DSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADR 147
           KV+GK K+ AQ       +C++ +++ + Y +   ++G L+EVN  ++  P LL      
Sbjct: 73  KVSGKSKRGAQFLTELAPLCRIASSDGEEYTIYSFIRGRLIEVNENILSNPALLQEKPST 132

Query: 148 EGYIAIIMPKPADWLKIKSSLLGLEDYK 175
           EGYIA+++PK  +   +   LL  E+YK
Sbjct: 133 EGYIAVVLPKFEESKSVTQGLLTPEEYK 160

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255539042	282	protein with unknown function [Ricinus c	0.962	0.631	0.848	1e-88
224061971	205	predicted protein [Populus trichocarpa]	0.897	0.809	0.867	1e-82
302142721	912	unnamed protein product [Vitis vinifera]	0.940	0.190	0.798	3e-82
225457867	196	PREDICTED: protein FAM206A [Vitis vinife	0.940	0.887	0.798	1e-81
356517742	203	PREDICTED: protein FAM206A-like isoform	0.935	0.852	0.803	5e-80
357467055	211	hypothetical protein MTR_3g114470 [Medic	0.951	0.834	0.767	3e-78
356517744	217	PREDICTED: protein FAM206A-like isoform	0.935	0.797	0.743	5e-77
312282739	230	unnamed protein product [Thellungiella h	0.956	0.769	0.768	7e-77
449437184	223	PREDICTED: protein FAM206A-like [Cucumis	0.967	0.802	0.762	1e-76
297842337	224	hypothetical protein ARALYDRAFT_476748 [	0.962	0.794	0.752	1e-75

>gi|255539042|ref|XP_002510586.1| protein with unknown function [Ricinus communis] gi|223551287|gb|EEF52773.1| protein with unknown function [Ricinus communis]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 151/178 (84%), Positives = 167/178 (93%)

Query: 2   QDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLA 61
           Q  +E+LHKLLLP+V +LP+ PPS+I+ NFV+YFAPDF+KPGHDQYVYRHANGLCVIGLA
Sbjct: 96  QVTDEDLHKLLLPDVSNLPIVPPSSIETNFVSYFAPDFMKPGHDQYVYRHANGLCVIGLA 155

Query: 62  PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRC 121
           PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTA+CKVCT + SYIVRC
Sbjct: 156 PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTALCKVCTRDASYIVRC 215

Query: 122 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           CVKGSLLEVN++LIKQPGLLNSSADREGY AI+MPKP DWLKIKSSLL LE+YK+ RE
Sbjct: 216 CVKGSLLEVNDKLIKQPGLLNSSADREGYTAIMMPKPGDWLKIKSSLLTLEEYKKLRE 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061971|ref|XP_002300690.1| predicted protein [Populus trichocarpa] gi|222842416|gb|EEE79963.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 156/166 (93%)

Query: 14  PNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGI 73
           P++ DLP TPPS++  NFV+YFAPDF+KPGHDQYVYRHANGLCVIGLA THVAFKDEGGI
Sbjct: 38  PDIRDLPTTPPSSVQTNFVSYFAPDFVKPGHDQYVYRHANGLCVIGLARTHVAFKDEGGI 97

Query: 74  TAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 133
           T VDFNVGKSDRSG KVTGKRKKNAQHFESNTA+CKVCT NDSYIVRCCVKGSLLEVN+R
Sbjct: 98  TVVDFNVGKSDRSGIKVTGKRKKNAQHFESNTALCKVCTQNDSYIVRCCVKGSLLEVNDR 157

Query: 134 LIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           LIKQP LLNSSADREGYIAIIMPKPADWLK+K+SLLGLE+YK+ RE
Sbjct: 158 LIKQPELLNSSADREGYIAIIMPKPADWLKVKASLLGLEEYKKLRE 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 163/174 (93%)

Query: 8   LHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAF 67
           L +LL+P+VH+LPL PPSA+  NFV+YFAPDF+KPGHDQYVYRHANGLCVIGLAP+HVA 
Sbjct: 739 LQRLLVPDVHNLPLFPPSAVQSNFVSYFAPDFMKPGHDQYVYRHANGLCVIGLAPSHVAL 798

Query: 68  KDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSL 127
            ++GG+TAVDFNVGK+DRSG KVTGKRKKNAQHFESN+A+CKVCTN+ SYIVRCCVKG+L
Sbjct: 799 TEKGGVTAVDFNVGKTDRSGIKVTGKRKKNAQHFESNSALCKVCTNDASYIVRCCVKGNL 858

Query: 128 LEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREEC 181
           LEVN+RLIKQPGLLNSSADREGYIAIIMPKPADWLK+K+SL+ +E+YK+ +E C
Sbjct: 859 LEVNDRLIKQPGLLNSSADREGYIAIIMPKPADWLKVKASLIDIEEYKKLKEVC 912

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457867|ref|XP_002269229.1| PREDICTED: protein FAM206A [Vitis vinifera]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 139/174 (79%), Positives = 163/174 (93%)

Query: 8   LHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAF 67
           L +LL+P+VH+LPL PPSA+  NFV+YFAPDF+KPGHDQYVYRHANGLCVIGLAP+HVA 
Sbjct: 23  LQRLLVPDVHNLPLFPPSAVQSNFVSYFAPDFMKPGHDQYVYRHANGLCVIGLAPSHVAL 82

Query: 68  KDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSL 127
            ++GG+TAVDFNVGK+DRSG KVTGKRKKNAQHFESN+A+CKVCTN+ SYIVRCCVKG+L
Sbjct: 83  TEKGGVTAVDFNVGKTDRSGIKVTGKRKKNAQHFESNSALCKVCTNDASYIVRCCVKGNL 142

Query: 128 LEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREEC 181
           LEVN+RLIKQPGLLNSSADREGYIAIIMPKPADWLK+K+SL+ +E+YK+ +E C
Sbjct: 143 LEVNDRLIKQPGLLNSSADREGYIAIIMPKPADWLKVKASLIDIEEYKKLKEVC 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517742|ref|XP_003527545.1| PREDICTED: protein FAM206A-like isoform 1 [Glycine max]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/173 (80%), Positives = 156/173 (90%)

Query: 7   ELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVA 66
           +L KLL+P+V +LPL PPSA++ NF  YFA DF+KP HDQYVYRHANGLCVIGLAP+HVA
Sbjct: 29  DLQKLLVPDVQNLPLIPPSAVETNFATYFALDFMKPAHDQYVYRHANGLCVIGLAPSHVA 88

Query: 67  FKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGS 126
           FKDEGGITAVDFNVGKSDRSG KVTGKRKKNAQHFESNTA+CK+ T NDSYIVRCCVKGS
Sbjct: 89  FKDEGGITAVDFNVGKSDRSGMKVTGKRKKNAQHFESNTALCKISTKNDSYIVRCCVKGS 148

Query: 127 LLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           LLEVN +LIKQP LLN SA REGYIAIIMPKPADWLK+K+SL+ L++YK+ RE
Sbjct: 149 LLEVNQQLIKQPELLNVSAYREGYIAIIMPKPADWLKVKASLVSLQEYKKLRE 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467055|ref|XP_003603812.1| hypothetical protein MTR_3g114470 [Medicago truncatula] gi|355492860|gb|AES74063.1| hypothetical protein MTR_3g114470 [Medicago truncatula]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/176 (76%), Positives = 156/176 (88%)

Query: 4   DEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPT 63
           +E++L KLLLP+V + PL PPSAI+ NFV YFA DF KP HDQY+YRHANGLCVIGLAP+
Sbjct: 17  EEDDLEKLLLPDVENFPLIPPSAIETNFVTYFALDFTKPAHDQYIYRHANGLCVIGLAPS 76

Query: 64  HVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCV 123
           H+AFKDEGGIT+VDFNVGKSDR+  KV+GKRKKNAQHFESNTA+CKV T NDSYIVRCCV
Sbjct: 77  HIAFKDEGGITSVDFNVGKSDRTAVKVSGKRKKNAQHFESNTALCKVSTKNDSYIVRCCV 136

Query: 124 KGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           KGSLLEVN +LIK P LLN SADREGYIAI+MPKPADWLK+K+S + L++YK+ RE
Sbjct: 137 KGSLLEVNQQLIKHPELLNGSADREGYIAIMMPKPADWLKVKASFVSLQEYKKVRE 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517744|ref|XP_003527546.1| PREDICTED: protein FAM206A-like isoform 2 [Glycine max]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 156/187 (83%), Gaps = 14/187 (7%)

Query: 7   ELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVA 66
           +L KLL+P+V +LPL PPSA++ NF  YFA DF+KP HDQYVYRHANGLCVIGLAP+HVA
Sbjct: 29  DLQKLLVPDVQNLPLIPPSAVETNFATYFALDFMKPAHDQYVYRHANGLCVIGLAPSHVA 88

Query: 67  FKDEGGITAVDFNVGKSDRSGFKVTGKRKK--------------NAQHFESNTAVCKVCT 112
           FKDEGGITAVDFNVGKSDRSG KVTGKRKK              NAQHFESNTA+CK+ T
Sbjct: 89  FKDEGGITAVDFNVGKSDRSGMKVTGKRKKLLLLLLLIGCVFVQNAQHFESNTALCKIST 148

Query: 113 NNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLE 172
            NDSYIVRCCVKGSLLEVN +LIKQP LLN SA REGYIAIIMPKPADWLK+K+SL+ L+
Sbjct: 149 KNDSYIVRCCVKGSLLEVNQQLIKQPELLNVSAYREGYIAIIMPKPADWLKVKASLVSLQ 208

Query: 173 DYKRKRE 179
           +YK+ RE
Sbjct: 209 EYKKLRE 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282739|dbj|BAJ34235.1| unnamed protein product [Thellungiella halophila]

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 151/177 (85%)

Query: 3   DDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAP 62
           +DE+EL  LLL ++ DLPL+PPSA   NFV+YF  DF K GHDQY+YRHANGLCVIGLAP
Sbjct: 51  EDEDELRNLLLSDIGDLPLSPPSATQVNFVSYFITDFTKSGHDQYIYRHANGLCVIGLAP 110

Query: 63  THVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCC 122
           TH+AFKDEGGIT +DFNVGKSDRS  KV+GKRKKNA   ESNTA+CKV T NDSYIVRCC
Sbjct: 111 THIAFKDEGGITNIDFNVGKSDRSVLKVSGKRKKNAMRSESNTALCKVSTANDSYIVRCC 170

Query: 123 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           VKGSLLEVN RLIKQP LLNSSADREGYIAIIMP+PADW K K SL+ LE+YK K+E
Sbjct: 171 VKGSLLEVNERLIKQPQLLNSSADREGYIAIIMPRPADWTKNKESLITLEEYKEKKE 227

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437184|ref|XP_004136372.1| PREDICTED: protein FAM206A-like [Cucumis sativus] gi|449511231|ref|XP_004163899.1| PREDICTED: protein FAM206A-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/181 (76%), Positives = 156/181 (86%), Gaps = 2/181 (1%)

Query: 1   MQDDE--EELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVI 58
            Q+DE  EEL KLL P+V DLPL PPSA++ NFV+YFAPDF+K GHDQYVYRHANGLCV+
Sbjct: 41  FQEDEQDEELRKLLTPDVRDLPLVPPSAVETNFVSYFAPDFIKEGHDQYVYRHANGLCVV 100

Query: 59  GLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYI 118
           GLA TH+AFKD GG+TAVDFNVGKSDRS FKVTGKRKKNAQ FE N+A+CKV T + SYI
Sbjct: 101 GLAATHIAFKDSGGVTAVDFNVGKSDRSSFKVTGKRKKNAQFFEPNSALCKVYTKDASYI 160

Query: 119 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 178
           VRC VKGSLLEVN+RLIKQP LLN+   REGYIAI+MPKPADWLK+K SLL LE++KR R
Sbjct: 161 VRCSVKGSLLEVNDRLIKQPELLNTLPHREGYIAIVMPKPADWLKVKESLLSLEEHKRLR 220

Query: 179 E 179
           E
Sbjct: 221 E 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842337|ref|XP_002889050.1| hypothetical protein ARALYDRAFT_476748 [Arabidopsis lyrata subsp. lyrata] gi|297334891|gb|EFH65309.1| hypothetical protein ARALYDRAFT_476748 [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/178 (75%), Positives = 153/178 (85%)

Query: 2   QDDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLA 61
           +D+E+EL KLLL ++ +LP++PPSA   NFV+YF  DF K GHDQY+YRHANGLCVIGLA
Sbjct: 44  EDEEDELRKLLLSDIGELPISPPSATQVNFVSYFITDFTKSGHDQYIYRHANGLCVIGLA 103

Query: 62  PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRC 121
           PTH+AFKDEGGIT VDFNVGKSDRS  KV+GKRKKNA   ESNTA+CKV T  DSYIVRC
Sbjct: 104 PTHIAFKDEGGITNVDFNVGKSDRSVLKVSGKRKKNALRSESNTALCKVSTAKDSYIVRC 163

Query: 122 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
           CVKGSLLEVN RLI+QP LLNSSADREGYIAIIMP+PADW K K SL+ LE+YK+K+E
Sbjct: 164 CVKGSLLEVNERLIRQPELLNSSADREGYIAIIMPRPADWTKNKESLITLEEYKQKKE 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2204375	225	AT1G75980 "AT1G75980" [Arabido	0.962	0.791	0.75	5.5e-70
MGI|MGI:2677850	193	BC026590 "cDNA sequence BC0265	0.827	0.792	0.326	1.1e-21
FB|FBgn0260464	214	CG9288 [Drosophila melanogaste	0.924	0.799	0.337	3.9e-21
RGD|1594560	193	Fam206a "family with sequence	0.821	0.787	0.322	6.3e-21
UNIPROTKB|Q29S16	187	FAM206A "Protein FAM206A" [Bos	0.864	0.855	0.321	1e-20
UNIPROTKB|J9NY63	181	FAM206A "Uncharacterized prote	0.821	0.839	0.316	2.7e-20
ZFIN|ZDB-GENE-060503-602	177	fam206a "family with sequence	0.821	0.858	0.329	3.5e-20
UNIPROTKB|Q9NX38	181	FAM206A "Protein FAM206A" [Hom	0.821	0.839	0.322	4.4e-20
UNIPROTKB|F1SP28	194	FAM206A "Uncharacterized prote	0.821	0.783	0.309	5.7e-20
UNIPROTKB|F1NHU7	179	FAM206A "Protein FAM206A" [Gal	0.783	0.810	0.306	2e-17

TAIR|locus:2204375 AT1G75980 "AT1G75980" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 135/180 (75%), Positives = 153/180 (85%)

Query:     2 QDDEEE--LHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIG 59
             Q+DEEE  L KLLL ++ +LP++PPSA   NFV+YF  DF K GHDQY+YRHANGLCVIG
Sbjct:    43 QEDEEEDELRKLLLSDIGELPISPPSATQVNFVSYFITDFTKSGHDQYIYRHANGLCVIG 102

Query:    60 LAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV 119
             LAPTH+AFKDEGGIT+VDFNVGKSDRS  KV+GKRKKNA   ESNTA+CKV T  D+YIV
Sbjct:   103 LAPTHIAFKDEGGITSVDFNVGKSDRSVLKVSGKRKKNALRSESNTALCKVSTAKDTYIV 162

Query:   120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 179
             RCCVKGSLLEVN RLIKQP LLNS+ADREGYIAIIMP+PADW K K SL+ LE+YK K+E
Sbjct:   163 RCCVKGSLLEVNERLIKQPELLNSTADREGYIAIIMPRPADWTKNKESLITLEEYKEKKE 222

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

MGI|MGI:2677850 BC026590 "cDNA sequence BC026590" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/156 (32%), Positives = 83/156 (53%)

Query:    23 PPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVG 81
             PPS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    I  + + + 
Sbjct:    24 PPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKAIQRISYQIS 83

Query:    82 KS-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPG 139
              +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EVN  ++ QP 
Sbjct:    84 NNCSRLENKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHQPS 143

Query:   140 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             LL      EGYIA+++PK  +   +   LL  + Y+
Sbjct:   144 LLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYE 179

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

FB|FBgn0260464 CG9288 [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 60/178 (33%), Positives = 96/178 (53%)

Query:     2 QDDEEEL-HKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGL 60
             + +E+E+  KL+ P         PS +D  F  Y+   + K      V  H+N +C+I L
Sbjct:    15 EHEEQEICGKLVAPITDSFQEDYPSVVDRFFTRYY---YFKGDVPYQVLYHSNRICLICL 71

Query:    61 APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCT-NNDSYIV 119
             AP H A     GI++V+F++G  DRS   V GK KK     ++ + +  + T N  +Y V
Sbjct:    72 APEHPALAQ--GISSVNFDIGNVDRSQNVVKGKGKKGGMILQAESTLALLTTANGGTYKV 129

Query:   120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRK 177
               C++G L+EVN  ++++P LL    +  GY AI++PK  +   IK+SLL  E Y+ +
Sbjct:   130 PSCIRGKLVEVNTAIVEEPKLLEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEER 187

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

RGD|1594560 Fam206a "family with sequence similarity 206, member A" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 50/155 (32%), Positives = 83/155 (53%)

Query:    24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
             PS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct:    25 PSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIKSISYQISN 84

Query:    83 S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
             +  R   KV+GK K+ AQ       +CK+ C++ + Y +  C++G L+EVN  ++ QP L
Sbjct:    85 NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCIRGRLMEVNENILHQPSL 144

Query:   141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             L      EGYIA+++PK  +   I   LL  + Y+
Sbjct:   145 LQEKPSTEGYIAVVLPKFEESKSITEGLLTQQQYE 179

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

UNIPROTKB|Q29S16 FAM206A "Protein FAM206A" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 53/165 (32%), Positives = 88/165 (53%)

Query:    16 VHDLPLTP--PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGG 72
             V DL   P  PS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    
Sbjct:     9 VADLAPEPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKT 68

Query:    73 ITAVDFNVGKS-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEV 130
             I ++ + +  +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EV
Sbjct:    69 IKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEV 128

Query:   131 NNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             N  ++ +P +L      EGYIA+++PK  +   I   LL  ++Y+
Sbjct:   129 NENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKEYE 173

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005960 "glycine cleavage complex" evidence=IEA

UNIPROTKB|J9NY63 FAM206A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 49/155 (31%), Positives = 83/155 (53%)

Query:    24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
             PS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct:    13 PSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72

Query:    83 S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
             +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EVN  ++ +P +
Sbjct:    73 NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHKPSI 132

Query:   141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             L      EGYIA+++PK  +   I   LL  + Y+
Sbjct:   133 LQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005960 "glycine cleavage complex" evidence=IEA

ZFIN|ZDB-GENE-060503-602 fam206a "family with sequence similarity 206, member A" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 51/155 (32%), Positives = 82/155 (52%)

Query:    24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
             PS ID  F  ++  D   KP  D  + +H+N +CVI LA +H  F++   I  +++ +  
Sbjct:    10 PSVIDRYFTRWYRTDLKGKPCEDHCILQHSNRICVITLAESHPIFQNGRKIKNINYQISD 69

Query:    83 S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
                R   KV+GK K+  Q       +C++ CT+   + +  C++G LLEVN  ++ +P L
Sbjct:    70 GCSRLKNKVSGKSKRGGQFLTEFAPLCRITCTDEQEFTIFSCIRGRLLEVNEVILNKPDL 129

Query:   141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             L      EGYIA+I+PK  +   +   LL  E Y+
Sbjct:   130 LMEKPSTEGYIAVILPKFEESKSVTEGLLTREQYE 164

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9NX38 FAM206A "Protein FAM206A" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 50/155 (32%), Positives = 83/155 (53%)

Query:    24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
             PS +D  F  ++ PD   K   D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct:    13 PSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72

Query:    83 S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
             +  R   KV+GK K+ AQ       +CK+ C++ + Y V  CV+G L+EVN  ++ +P +
Sbjct:    73 NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPSI 132

Query:   141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             L      EGYIA+++PK  +   I   LL  + Y+
Sbjct:   133 LQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

UNIPROTKB|F1SP28 FAM206A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 48/155 (30%), Positives = 83/155 (53%)

Query:    24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
             PS +D  F  ++  D   KP  D  + +H+N +CVI LA +H   +    I ++ + +  
Sbjct:    26 PSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIESISYQIST 85

Query:    83 S-DRSGFKVTGKRKKNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGL 140
             +  R   KV+GK K+ AQ       +CK+ C++ + Y +  CV+G L+EVN  ++ +P +
Sbjct:    86 NCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNEDILHKPSI 145

Query:   141 LNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             L      EGYIA+++PK  +   +   LL  + Y+
Sbjct:   146 LQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYE 180

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005960 "glycine cleavage complex" evidence=IEA

UNIPROTKB|F1NHU7 FAM206A "Protein FAM206A" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/150 (30%), Positives = 80/150 (53%)

Query:    31 FVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKS-DRSGF 88
             F  ++  D   +P  D  V +H+N +CVI LA  H   +    IT++++ +  +  R   
Sbjct:    13 FTRWYKADVKGRPCEDFCVLQHSNRICVITLAEAHPLLQPGKTITSINYQISPNCSRLQN 72

Query:    89 KVTGKRKKN--AQHFESNTAVCKVCTNN-DSYIVRCCVKGSLLEVNNRLIKQPGLLNSSA 145
             KV+GK K+   AQ       +C++ +++ + Y +  C++G L+EVN  ++  P LL    
Sbjct:    73 KVSGKSKRTQGAQFLTELAPLCRIASSDGEEYTIYSCIRGRLIEVNENILSNPALLQEKP 132

Query:   146 DREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
               EGYIA+++PK  +   +   LL  E+YK
Sbjct:   133 STEGYIAVVLPKFEESKSVTQGLLTPEEYK 162

GO:0005960 "glycine cleavage complex" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29S16	F206A_BOVIN	No assigned EC number	0.3212	0.8648	0.8556	yes	no
Q28G67	F206A_XENTR	No assigned EC number	0.3032	0.8216	0.8306	yes	no
Q5RFS0	F206A_PONAB	No assigned EC number	0.3225	0.8216	0.8397	yes	no
Q1LU93	F206A_DANRE	No assigned EC number	0.3290	0.8216	0.8587	yes	no
Q9NX38	F206A_HUMAN	No assigned EC number	0.3225	0.8216	0.8397	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II0169 hypothetical protein (206 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
COG0509	131	COG0509, GcvH, Glycine cleavage system H protein (	2e-05
pfam01597	122	pfam01597, GCV_H, Glycine cleavage H-protein	7e-05
TIGR00527	128	TIGR00527, gcvH, glycine cleavage system H protein	7e-05
PRK01202	127	PRK01202, PRK01202, glycine cleavage system protei	0.002

>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 119 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 178
           V   V G ++EVN  L+  P L+NS    EG+I  +  KPAD  +   +LL  E Y    
Sbjct: 71  VYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKL--KPADPSEELEALLDAEAYAELL 128

Query: 179 EE 180
           +E
Sbjct: 129 KE 130

Length = 131

>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 123 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREE 180
           V G ++EVN +L   PGL+N     +G+IA + P   + L+   SL+  E Y++  +E
Sbjct: 67  VSGEVVEVNEKLEDNPGLINKDPYEDGWIAKLKPSNLEELE---SLMTAEQYEKTLKE 121

This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. Length = 122

>gnl|CDD|200024 TIGR00527, gcvH, glycine cleavage system H protein

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 37  PDFLK-PGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDF-NVGKSDRSGFKVTGKR 94
           P  L+     ++V    +    +G+  T  A  + G I  V+   VG    +G       
Sbjct: 3   PQDLRYSSEHEWVRVEGDKTATVGI--TKFAQDELGDIVFVELPEVGAEVAAG------- 53

Query: 95  KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAII 154
                  ES  +V  V   +D Y     V G+++EVN  L   P L+N     +G++  +
Sbjct: 54  -------ESLGSVESVKAASDIY---APVDGTVVEVNTALEDSPELVNEDPYGDGWLIKV 103

Query: 155 MPKPADWLKIKSSLLGLEDYKRKREE 180
             K +D       L+  E Y+   E 
Sbjct: 104 --KLSDGESEVEGLMSAEQYEATLEH 127

This model represents the glycine cleavage system H protein, which shuttles the methylamine group of glycine from the P protein to the T protein. The mature protein is about 130 residues long and contains a lipoyl group covalently bound to a conserved Lys residue. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff [Energy metabolism, Amino acids and amines]. Length = 128

>gnl|CDD|234918 PRK01202, PRK01202, glycine cleavage system protein H; Provisional

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 123 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREE 180
           V G ++EVN  L   P L+N     EG++  I P     L     LL  E Y+   EE
Sbjct: 73  VSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDESELD---DLLDAEAYEALIEE 127

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3266	172	consensus Predicted glycine cleavage system H prot	100.0
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	99.97
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	99.96
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	99.96
PRK13380	144	glycine cleavage system protein H; Provisional	99.96
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	99.96
PRK01202	127	glycine cleavage system protein H; Provisional	99.96
PRK00624	114	glycine cleavage system protein H; Provisional	99.94
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	99.94
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	99.9
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	98.41
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.16
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.99
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	96.32
PRK06748	83	hypothetical protein; Validated	96.25
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.01
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	96.01
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	95.32
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.14
PRK07051	80	hypothetical protein; Validated	94.84
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	94.37
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	94.18
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	94.16
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	93.83
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	92.86
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	92.34
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	92.28
PRK14040	593	oxaloacetate decarboxylase; Provisional	92.25
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	91.57
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.24
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	91.02
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	90.93
PRK09282	592	pyruvate carboxylase subunit B; Validated	90.91
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	90.64
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	90.43
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	89.08
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	88.12
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	87.76
PRK12999	1146	pyruvate carboxylase; Reviewed	87.69
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	87.31
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	86.96
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	86.71
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	84.98
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	84.77
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	84.01
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	83.82
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	83.01
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	82.85
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	82.69
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	81.14
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	81.01

>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]

Probab=100.00  E-value=9.2e-44  Score=281.96  Aligned_cols=167  Identities=40%  Similarity=0.698  Sum_probs=157.3

Q ss_pred             ccccCCCCCCCCcccccceeeeecccCCCCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcCCCCcccCCceeec
Q 029958           13 LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTG   92 (185)
Q Consensus        13 ~~~~~~~~~~~p~~~~r~~~~~y~~~~~~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~vg~~~~~~~~v~g   92 (185)
                      .++...++..+|+++||||+|||..|+.+..||+++.+|+|++|+|++||+||+.+..+.|.+|+|.+|+++|..++|||
T Consensus         2 at~~~~~~~~~pS~vdr~ftr~y~~d~kg~~~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSG   81 (172)
T KOG3266|consen    2 ATEIGMAEPSYPSVVDRYFTRYYKEDFKGSGYDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSG   81 (172)
T ss_pred             CccccccCCCChhhhhhhhhhhhhhhccCCCCCceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheecc
Confidence            46677788999999999999999999876669999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEeecCceEEEE-ecCCeeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCH
Q 029958           93 KRKKNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGL  171 (185)
Q Consensus        93 k~Kkg~~~l~~~~~l~~I~-s~~~~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~~~~~~~~~~Lls~  171 (185)
                      |+||||+.+++.++||.+. +.+++|.++|||+|+|+|||++|.++|++|++.|..+||+||++|.+++...+++.||+.
T Consensus        82 K~KkgAl~lq~~s~Lc~~~~a~g~~y~V~scVrG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt~  161 (172)
T KOG3266|consen   82 KGKKGALILQELSPLCKFKTADGSTYVVRSCVRGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLTQ  161 (172)
T ss_pred             ccccccEeeccCCcceeEEecCCCeEEEeeeeceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCCH
Confidence            9999999999999999995 555789999999999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHh
Q 029958          172 EDYKRKRE  179 (185)
Q Consensus       172 eeY~~~~~  179 (185)
                      ++|++...
T Consensus       162 eqy~ek~~  169 (172)
T KOG3266|consen  162 EQYEEKSE  169 (172)
T ss_pred             HHHHHHHh
Confidence            99988653

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=99.97  E-value=1.8e-31  Score=207.53  Aligned_cols=115  Identities=26%  Similarity=0.400  Sum_probs=103.2

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +.+|+|+...+ ||+++|||  |++||+++|+|++|++| +|+                 .+..|++|++|+|.++..+|
T Consensus        12 ~~~heWvr~e~-d~~~tvGi--T~~aq~~lGdiv~Velpe~G~-----------------~v~~g~~~~~vESvKaasdv   71 (131)
T COG0509          12 TAEHEWVRVEG-DGTATVGI--TDYAQDQLGDIVFVELPEVGA-----------------EVKAGESLAVVESVKAASDV   71 (131)
T ss_pred             ccceEEEEecC-CCEEEEeC--CHHHHHhcCCEEEEEcCCCCC-----------------eecCCCeEEEEEeeeeeccc
Confidence            35799987654 68999999  99999999999999999 886                 68899999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCc--cchhhhhccCCCHHHHHHHHh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKP--ADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~--~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      ||||+|+|+|||++|.++|++||++||++|||+.+.+..  +++    +.||+.++|.+...
T Consensus        72 yaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~~~~~----~~L~~~~~y~~~~~  129 (131)
T COG0509          72 YAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADPSEEL----EALLDAEAYAELLK  129 (131)
T ss_pred             cCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCChHHHH----HhccCHHHHHHHhh
Confidence            999999999999999999999999999999999777752  225    88999999998765

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=99.96  E-value=8.5e-30  Score=196.61  Aligned_cols=116  Identities=26%  Similarity=0.456  Sum_probs=97.9

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+... .+|.++|||  |+++|+.+|+|++|++| +|.                 .++.|++|++|++.+.+++|
T Consensus         4 ~~~h~Wv~~~-~~g~~~vGi--t~~a~~~lG~i~~v~lp~~g~-----------------~~~~g~~~~~ies~k~~~~l   63 (122)
T PF01597_consen    4 TEDHLWVKPE-GDGVVRVGI--TDFAQDELGDIVYVELPKVGT-----------------KLKKGDPFASIESSKAVSDL   63 (122)
T ss_dssp             ETTSEEEEEE-TTTEEEEEE---HHHHHHH-SEEEEE-B-TT------------------EE-TTSEEEEEEESSEEEEE
T ss_pred             CCCcEEEEEC-CCCEEEEEE--CchHhhcCCceEEEEEccCCC-----------------EEecCCcEEEEEECceeeec
Confidence            3689888654 578999999  99999999999999999 765                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +|||+|+|+++|+.|.++|++||++||++|||+++.|. +.++    ++||+.++|.++.+.
T Consensus        64 ~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d~~~~----~~Ll~~~eY~~~~~~  121 (122)
T PF01597_consen   64 YSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSDPEEF----DELLSAEEYEKFLKE  121 (122)
T ss_dssp             EESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESCGGGG----GGSBEHHHHHHHHHC
T ss_pred             ccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCCHHHH----HhCCCHHHHHHHHhc
Confidence            99999999999999999999999999999999987775 4445    669999999998764

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR00527 gcvH glycine cleavage system H protein

Probab=99.96  E-value=2.2e-29  Score=195.76  Aligned_cols=115  Identities=22%  Similarity=0.354  Sum_probs=104.1

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+.. ..+|.++|||  |+++|+.+|+|.+|+|| +|.                 .++.|++||+|++.+...+|
T Consensus         9 ~~~H~Wv~~-~~~g~~~vGi--T~~a~~~lG~i~~v~lp~~G~-----------------~v~~g~~~~~IEs~K~~~~i   68 (127)
T TIGR00527         9 SKEHEWVRV-EGDGTATVGI--TEFAQDELGDIVFVELPEVGA-----------------EVSAGESCGSVESVKAASDI   68 (127)
T ss_pred             CCCcEEEEE-cCCcEEEEee--cHHHhhCCCCCceeecCCCCC-----------------EecCCCEEEEEEEeeeeeee
Confidence            478998864 4578999999  99999999999999999 776                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      +||++|+|+++|+.|.++|++||++||++|||+.+.+. +.++    +.|||+++|.++.+
T Consensus        69 ~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~  125 (127)
T TIGR00527        69 YAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSDESEL----EGLMDAEQYEATLE  125 (127)
T ss_pred             ecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCCHHHH----HhcCCHHHHHHHhh
Confidence            99999999999999999999999999999999987765 4445    78999999999765

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK13380 glycine cleavage system protein H; Provisional

Probab=99.96  E-value=9.7e-29  Score=195.94  Aligned_cols=113  Identities=24%  Similarity=0.359  Sum_probs=102.7

Q ss_pred             CccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEee
Q 029958           43 GHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRC  121 (185)
Q Consensus        43 ~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~s  121 (185)
                      +|.|+.. +.+|+++|||  |+++|+.+|+|++|++| +|.                 .|+.|++|++|++.+...+|+|
T Consensus        19 ~H~Wv~~-~~~g~~~vGi--td~aq~~lG~I~~v~lp~~G~-----------------~V~~Gd~~~~IEs~K~~~~v~s   78 (144)
T PRK13380         19 NHEWLRL-EGDGTVTVGI--TDYAQTMAGDVVFVRLKELGK-----------------KVEKGKPVATLESGKWAGPVPA   78 (144)
T ss_pred             CeEEEEE-cCCCEEEEec--CHHHHHhcCCEEEEEcCCCCC-----------------EeeCCCeEEEEEEcceEeeeec
Confidence            8999865 4578999999  99999999999999999 776                 6999999999999999999999


Q ss_pred             eeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958          122 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       122 pV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      |++|+|+++|.+|.++|+|||++||++|||+.+.+. ++++    +.||+.++|.++.+
T Consensus        79 PvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d~~~~----~~Ll~~~~y~~~~~  133 (144)
T PRK13380         79 PLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPANPEEL----KQLLDGDAADRLLK  133 (144)
T ss_pred             CcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHHH
Confidence            999999999999999999999999999999977654 5555    88999999998765

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=99.96  E-value=2.8e-29  Score=200.54  Aligned_cols=115  Identities=24%  Similarity=0.453  Sum_probs=103.4

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +..|+|+...  |++++|||  |++|++.+|++++|+|| +|.                 .|..|+.++.+++.++...|
T Consensus        54 t~qHEWV~~~--~~vgtvGI--t~~A~~~LGdvv~veLPe~Gt-----------------~vskgds~gavESVKaaSeI  112 (172)
T KOG3373|consen   54 TSQHEWVLVE--GGVGTVGI--TDFAQEHLGDVVYVELPEVGT-----------------EVSKGDSFGAVESVKAASEI  112 (172)
T ss_pred             cceeeEEEec--CCeeEech--hhhhhhhcCceEEEEcCCCCC-----------------ccccCcceeeeeehhhhhhh
Confidence            6889999754  88999999  99999999999999999 886                 57777888888777777779


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEE-EEeCCccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIA-IIMPKPADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWla-ii~p~~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      |+||+|+|+|||+.|.++|.|+|++||++|||+ +.+.+++++    +.||+.++|.+++..
T Consensus       113 ysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~~el----e~Lm~~e~Y~kf~~e  170 (172)
T KOG3373|consen  113 YSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSPEEL----ESLMNEEQYAKFCEE  170 (172)
T ss_pred             hCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCHHHH----HHhcCHHHHHhhhhc
Confidence            999999999999999999999999999999999 556678888    899999999999764

>PRK01202 glycine cleavage system protein H; Provisional

Probab=99.96  E-value=1.1e-28  Score=191.66  Aligned_cols=114  Identities=25%  Similarity=0.351  Sum_probs=103.1

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...  +|.++|||  |+++|+.+|+|++|+|| +|.                 .|+.|++|++|++.+..++|
T Consensus        11 s~~H~Wv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~~G~-----------------~v~~g~~~~~IEs~K~~~~i   69 (127)
T PRK01202         11 TKSHEWVRVE--GDTATVGI--TDHAQEQLGDIVFVELPEVGD-----------------EVKAGETFGVVESVKAASDI   69 (127)
T ss_pred             CCCcEEEEEc--CCEEEEee--CHHHHhhcCCeeEEEcCCCCC-----------------EecCCCEEEEEEEcceeeee
Confidence            3689998653  47999999  99999999999999999 775                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      +||++|+|+++|.+|.++|++||++||++|||+.+.+. +.++    +.|||.++|.++.+
T Consensus        70 ~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~~~~----~~L~~~~~Y~~~~~  126 (127)
T PRK01202         70 YAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDESEL----DDLLDAEAYEALIE  126 (127)
T ss_pred             ecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCHHHH----HhCCCHHHHHHHhc
Confidence            99999999999999999999999999999999988765 3444    78999999999764

>PRK00624 glycine cleavage system protein H; Provisional

Probab=99.94  E-value=1.6e-26  Score=176.83  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=91.6

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...+ +|.++|||  |++||+++|+|++|++| +|+                 .|+.|++||+|++.+...+|
T Consensus         5 ~~~H~Wv~~~~-~~~~~vGi--T~~a~~~lG~i~~v~lp~~G~-----------------~V~~g~~i~~IEs~K~~~~i   64 (114)
T PRK00624          5 SDYHVWIEPIH-SRIVRLGL--TSKMQENLGNILHIDLPSVGS-----------------FCKEGEVLVILESSKSAIEV   64 (114)
T ss_pred             CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC-----------------EEeCCCEEEEEEeccEEEEE
Confidence            47899987555 67999999  99999999999999999 776                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccch
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADW  161 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~  161 (185)
                      +||++|+|+++|++|.++|++||++||++|||+.+.+. +.++
T Consensus        65 ~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~~~~  107 (114)
T PRK00624         65 LSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDEDFDS  107 (114)
T ss_pred             eCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECChhHh
Confidence            99999999999999999999999999999999977664 4444

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=99.94  E-value=1.7e-26  Score=175.76  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=91.3

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...+ ++.++|||  |++||+++|+|++|+|| +|+                 .|+.|++|++|++.+...+|
T Consensus         3 ~~~H~Wv~~~~-~~~~~vGi--T~~aq~~lG~i~~v~lp~~G~-----------------~V~~g~~i~~IEs~K~~~ei   62 (110)
T TIGR03077         3 SDYHVWILPIH-SQVVRLGL--TSRMQENLGNILHIDLPSVGS-----------------SCKEGEVLVILESSKSAIEV   62 (110)
T ss_pred             CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC-----------------EEcCCCEEEEEEeccEEEEE
Confidence            47899987555 67999999  99999999999999999 775                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-Cccch
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADW  161 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~  161 (185)
                      +||++|+|+++|++|.++|++||++||++|||+.+.+ ++.++
T Consensus        63 ~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~~~~~  105 (110)
T TIGR03077        63 LSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDEDFDG  105 (110)
T ss_pred             eCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCHHHh
Confidence            9999999999999999999999999999999996665 34444

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>cd06848 GCS_H Glycine cleavage H-protein

Probab=99.90  E-value=3.3e-23  Score=153.11  Aligned_cols=93  Identities=25%  Similarity=0.375  Sum_probs=86.4

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...+ +|.++|||  |+++++.+|+|.+|+++ +|.                 .++.|++|++|++.+.+++|
T Consensus         2 ~~~h~W~~~~~-~~~~~lGl--t~~~~~~lG~i~~i~~~~~G~-----------------~v~~g~~l~~iEs~k~~~~i   61 (96)
T cd06848           2 TKDHEWVKVEG-DGIATVGI--TDYAQDLLGDIVFVELPEVGT-----------------EVKKGDPFGSVESVKAASDL   61 (96)
T ss_pred             CCCCEEEEECC-CcEEEEee--CHHHHhhCCCEEEEEecCCCC-----------------EEeCCCEEEEEEEccEEEEE
Confidence            35898887654 68999999  99999999999999999 665                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEE
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAI  153 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlai  153 (185)
                      +||++|+|+++|.+|.++|++||++||++|||+.
T Consensus        62 ~sP~~G~v~~~n~~l~~~p~~ln~~p~~~gWl~~   95 (96)
T cd06848          62 YSPVSGEVVEVNEALLDNPELINSDPYGEGWLVK   95 (96)
T ss_pred             eCCCCEEEEEEhhhhhcChHHHhCCCCCCCeEEE
Confidence            9999999999999999999999999999999984

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=98.41  E-value=6.3e-07  Score=61.98  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             EEeecCChHHHhcCCCEEEEEcC--CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           57 VIGLAPTHVAFKDEGGITAVDFN--VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        57 ~vGiapt~~a~~~lg~I~~V~~~--vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ++|+  +++++ .++....+++.  .|+                 .++.|++|+.+++.+...+|+||++|+|+++|..+
T Consensus         1 ~~~~--~~~~~-~~~~g~~~~~~v~~G~-----------------~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~   60 (73)
T cd06663           1 TILI--PDLAQ-HLGDGTVVKWLKKVGD-----------------KVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE   60 (73)
T ss_pred             Cccc--CCCCC-CccCEEEEEEEcCCcC-----------------EECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCC
Confidence            4667  77777 55666655444  443                 79999999999999999999999999999999888


Q ss_pred             hcCccccccCCCCCceEEE
Q 029958          135 IKQPGLLNSSADREGYIAI  153 (185)
Q Consensus       135 ~~~P~Lln~~P~~~GWlai  153 (185)
                      .++       .+..+||+.
T Consensus        61 g~~-------v~~g~~l~~   72 (73)
T cd06663          61 GTK-------VEGDTPLVK   72 (73)
T ss_pred             CCE-------ECCCCEEEE
Confidence            765       456688874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.16  E-value=0.0011  Score=45.89  Aligned_cols=34  Identities=12%  Similarity=0.077  Sum_probs=31.6

Q ss_pred             EEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958          100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus       100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      .+++|++||.+++.+..++|+||++|.|.+++-.
T Consensus        23 ~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~   56 (71)
T PRK05889         23 QIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVS   56 (71)
T ss_pred             EECCCCEEEEEEeccceeEEeCCCCEEEEEEEeC
Confidence            7999999999999999999999999999999843

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.99  E-value=0.0013  Score=45.31  Aligned_cols=34  Identities=12%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             EEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958          100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus       100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      .+++|++|+++++.+...++.||++|+|.+++-.
T Consensus        22 ~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~   55 (70)
T PRK08225         22 TVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQ   55 (70)
T ss_pred             EECCCCEEEEEEcCCCcceEeCCCCEEEEEEEec
Confidence            7999999999999999999999999999998743

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=96.32  E-value=0.009  Score=41.76  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=32.5

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..++.|++||.|++.+...+|+||.+|.|.++.-.
T Consensus        25 G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~   60 (74)
T PF00364_consen   25 GDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVE   60 (74)
T ss_dssp             TEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESST
T ss_pred             CCEEEcCceEEEEEcCccceEEECCCCEEEEEEEEC
Confidence            458999999999999999999999999999988644

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=96.25  E-value=0.012  Score=42.82  Aligned_cols=35  Identities=6%  Similarity=0.021  Sum_probs=31.5

Q ss_pred             EEeecCceEEEEe-cCCeeeEeeeeeeEEEeeehhh
Q 029958          100 HFESNTAVCKVCT-NNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus       100 ~l~~~~~l~~I~s-~~~~~~I~spV~G~vvevN~~L  134 (185)
                      .++.|++|++|++ ++...+|.||.+|+|.+++-..
T Consensus        25 ~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~   60 (83)
T PRK06748         25 YVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVE   60 (83)
T ss_pred             EECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCC
Confidence            7999999999999 8888899999999999998443

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.01  E-value=0.02  Score=37.75  Aligned_cols=35  Identities=14%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ..+++|+.|+++++.+...+|+||.+|.|..++-.
T Consensus        19 ~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~   53 (67)
T cd06850          19 DKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK   53 (67)
T ss_pred             CEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEEC
Confidence            37999999999988777789999999999988754

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=96.01  E-value=0.014  Score=53.77  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=44.3

Q ss_pred             CCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           70 EGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        70 lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      .+.|..|.+| .|.....+.-++=..|- +..|+.|++||+|++.+..++|.||.+|+|.++.-.-
T Consensus        41 ~~~i~~i~~P~lg~~~~eg~I~~w~v~~-Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~  105 (418)
T PTZ00144         41 YFSIKVIKVPTMGDSISEGTVVEWKKKV-GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEE  105 (418)
T ss_pred             cccceEEecCCCCCCcceEEEEEEEeCC-CCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCC
Confidence            3445556666 45433323222222333 4589999999999999999999999999999887443

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=95.32  E-value=0.033  Score=48.10  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|+.|++||+|++.+.+.+|.||.+|+|.+++-.
T Consensus        27 g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~   62 (371)
T PRK14875         27 GDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ   62 (371)
T ss_pred             CCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcC
Confidence            448999999999999999999999999999988643

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.14  E-value=0.05  Score=42.65  Aligned_cols=36  Identities=6%  Similarity=0.041  Sum_probs=32.1

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ..++.|++|+.+++.+-..+|.||.+|+|.+++-..
T Consensus        81 d~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~  116 (130)
T PRK06549         81 DQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTP  116 (130)
T ss_pred             CEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCC
Confidence            379999999999999999999999999999887544

>PRK07051 hypothetical protein; Validated

Probab=94.84  E-value=0.054  Score=38.37  Aligned_cols=36  Identities=11%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..++.|++++++++.+...+|.||++|+|..++-.
T Consensus        29 Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~   64 (80)
T PRK07051         29 GDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVE   64 (80)
T ss_pred             CCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcC
Confidence            447999999999999988889999999999988743

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=94.37  E-value=0.072  Score=41.93  Aligned_cols=34  Identities=6%  Similarity=0.077  Sum_probs=30.7

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN  131 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN  131 (185)
                      +..|+.|++||.|++-+-+.+|.||.+|.|.+|=
T Consensus        89 Gd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il  122 (140)
T COG0511          89 GDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL  122 (140)
T ss_pred             CCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence            4479999999999999999999999999999873

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=94.18  E-value=0.082  Score=48.48  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=43.1

Q ss_pred             EEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958           76 VDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI  135 (185)
Q Consensus        76 V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~  135 (185)
                      |.+| .|.....+.-++-.+|- +..|+.|++|++|++++...+|.||.+|+|.++.-.--
T Consensus         5 i~mP~lge~~~EG~I~~W~~k~-GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G   64 (404)
T COG0508           5 IKMPDLGETMTEGTIVEWLKKV-GDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG   64 (404)
T ss_pred             EecCCCCCccceEEEEEEecCC-CCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCC
Confidence            4455 44433334444444444 34899999999999999999999999999999876543

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=94.16  E-value=0.12  Score=48.42  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             CCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           71 GGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        71 g~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      |++..|.+| .|.....+.-++=..|. +..|+.|++||+|++.+.+.+|.||.+|+|.++.-.-
T Consensus        89 ~~m~~i~mP~lg~~~~eG~I~~w~v~~-GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~e  152 (463)
T PLN02226         89 GDTVEAVVPHMGESITDGTLATFLKKP-GERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE  152 (463)
T ss_pred             CCceEEecCCCCCCcceEEEEEEEeCC-CCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCC
Confidence            455566677 56543333333333333 4689999999999999999999999999999887443

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.83  E-value=0.14  Score=41.06  Aligned_cols=37  Identities=5%  Similarity=-0.019  Sum_probs=32.9

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..++.|+.|+.+++.+...+|.||.+|+|..++-+.
T Consensus       103 Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~  139 (153)
T PRK05641        103 GQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKE  139 (153)
T ss_pred             CCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence            4589999999999999988999999999999998543

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=92.86  E-value=0.15  Score=40.80  Aligned_cols=35  Identities=9%  Similarity=0.121  Sum_probs=31.9

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..|+.|++||.|++.+...+|.||++|+|+++.-
T Consensus       105 Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v  139 (155)
T PRK06302        105 GDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV  139 (155)
T ss_pred             CCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence            45799999999999999999999999999999874

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=92.34  E-value=0.19  Score=44.06  Aligned_cols=37  Identities=11%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|+.|++||.|++.+...+|.||.+|+|++++-.-
T Consensus       223 GDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVke  259 (274)
T PLN02983        223 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAED  259 (274)
T ss_pred             CCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCC
Confidence            4589999999999999999999999999999998543

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=92.28  E-value=0.19  Score=40.32  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|+.|++||.|++.+-..+|.|+++|+|.++.-.
T Consensus       106 Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~  141 (156)
T TIGR00531       106 GDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVE  141 (156)
T ss_pred             CCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeC
Confidence            457999999999999999999999999999988743

The gene name is accB or fabE.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=92.25  E-value=0.24  Score=47.62  Aligned_cols=37  Identities=8%  Similarity=0.064  Sum_probs=33.2

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|++|++||.+++.+.+.+|.||++|+|.+++-..
T Consensus       543 Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~  579 (593)
T PRK14040        543 GQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKE  579 (593)
T ss_pred             CCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCC
Confidence            5589999999999999999999999999999998543

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=91.57  E-value=0.39  Score=38.65  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             ceEEeecCceEEEEecCCe-eeEeeeeeeEEEeeehhhh
Q 029958           98 AQHFESNTAVCKVCTNNDS-YIVRCCVKGSLLEVNNRLI  135 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~-~~I~spV~G~vvevN~~L~  135 (185)
                      +-.|+.|+.|+.+.+.++. ..++||++|.|+-||+.=.
T Consensus        99 G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~  137 (150)
T PF09891_consen   99 GDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW  137 (150)
T ss_dssp             SEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred             CcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence            4579999999999888775 7999999999999997543

; PDB: 3D4R_D.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.24  E-value=0.33  Score=46.80  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=32.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|++|++|+.|++.+-+.+|.||++|.|.++.-.
T Consensus       544 Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~  579 (596)
T PRK14042        544 GDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQ  579 (596)
T ss_pred             CCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeC
Confidence            558999999999999999999999999999888643

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=91.02  E-value=0.34  Score=46.54  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=32.2

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..|+.|++|+.|++.+.+.+|.||++|+|.+++-
T Consensus       536 Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v  570 (582)
T TIGR01108       536 GQTVAEGEVLLILEAMKMETEIKAAAAGTVREILV  570 (582)
T ss_pred             CCEECCCCEEEEEEeccceeEEecCCCeEEEEEEe
Confidence            45899999999999999999999999999998873

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=90.93  E-value=0.38  Score=49.66  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=33.0

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|++|++|+.|++.+.+.+|.||++|+|.+++-.
T Consensus      1093 Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~ 1128 (1143)
T TIGR01235      1093 GQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVK 1128 (1143)
T ss_pred             CCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeC
Confidence            568999999999999999999999999999998744

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=90.91  E-value=0.33  Score=46.69  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=33.5

Q ss_pred             cceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           97 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        97 g~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      -+..|++|++|+.+++.+...+|+||++|+|.+++-.-
T Consensus       540 ~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~  577 (592)
T PRK09282        540 EGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKE  577 (592)
T ss_pred             CCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCC
Confidence            35689999999999999999999999999998887544

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=90.64  E-value=0.52  Score=43.33  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=32.5

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|+.|++||.|++.+..++|.||.+|+|.++.-..
T Consensus        27 Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~   63 (407)
T PRK05704         27 GDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE   63 (407)
T ss_pred             cCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCC
Confidence            4589999999999999999999999999998776433

>TIGR02712 urea_carbox urea carboxylase

Probab=90.43  E-value=0.46  Score=49.23  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=35.0

Q ss_pred             ccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           94 RKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        94 ~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      .++-+..|++|++|+.|++.+.+.+|.||++|+|.+++-.
T Consensus      1147 ~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~ 1186 (1201)
T TIGR02712      1147 LVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQ 1186 (1201)
T ss_pred             EeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeC
Confidence            3445679999999999999999999999999999998843

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=89.08  E-value=1.4  Score=28.05  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..+..+++++.++..+....+.+|.+|.+.+.|-
T Consensus        25 g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~   59 (74)
T cd06849          25 GDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILV   59 (74)
T ss_pred             CCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEee
Confidence            34788999999998877788999999999988773

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=88.12  E-value=1  Score=41.41  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..++.|++||+|++++...+|.||.+|.|.++.-.-
T Consensus        25 Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~e   61 (403)
T TIGR01347        25 GDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE   61 (403)
T ss_pred             cCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCC
Confidence            4589999999999999999999999999998876443

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=87.76  E-value=0.84  Score=43.88  Aligned_cols=61  Identities=20%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ++.|.+| .|.....+.-++= .++-+..|+.|++||+|++++...+|.||.+|+|.++.-..
T Consensus       135 ~~~~~~P~lg~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~  196 (590)
T TIGR02927       135 ATDIEMPELGESVTEGTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEE  196 (590)
T ss_pred             ceEEEcCCCCCCcceEEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCC
Confidence            3456666 4532222222222 33335689999999999999999999999999998776544

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK12999 pyruvate carboxylase; Reviewed

Probab=87.69  E-value=0.68  Score=47.83  Aligned_cols=36  Identities=8%  Similarity=0.121  Sum_probs=32.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ++.|++|++|+.+++.+-+.+|.||++|+|.+++-.
T Consensus      1095 Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~ 1130 (1146)
T PRK12999       1095 GDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVK 1130 (1146)
T ss_pred             CCEECCCCEEEEEEccccceEEecCCCEEEEEEEeC
Confidence            458999999999999999999999999999998744

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=87.31  E-value=1.1  Score=43.30  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      ..++.|++|+.|++.+...+|.||.+|.|.++.-
T Consensus        26 d~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~   59 (633)
T PRK11854         26 DKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV   59 (633)
T ss_pred             CEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEe
Confidence            3799999999999999999999999999987664

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=86.96  E-value=1  Score=43.52  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             CEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958           72 GITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN  131 (185)
Q Consensus        72 ~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN  131 (185)
                      .+..+.+| .|  ...+.-++=..| -+..++.|++||+|++.+...+|.||.+|+|.++.
T Consensus       205 ~~~~~~~p~lg--~~eg~v~~w~v~-~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~  262 (633)
T PRK11854        205 GVKDVNVPDIG--GDEVEVTEVMVK-VGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIK  262 (633)
T ss_pred             CceEEecCCCc--ccceEEEEEEec-CCCeecCCCceEEEEecceeeEeeCCCCeEEEEEe
Confidence            34556677 56  223333333333 45689999999999999999999999999987655

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=86.71  E-value=1.3  Score=41.99  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ..++.|++||+|++.+..+.|.||++|.|..++-+.
T Consensus        27 d~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~   62 (547)
T PRK11855         27 DTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV   62 (547)
T ss_pred             CEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCC
Confidence            379999999999999999999999999999887543

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=84.98  E-value=1.3  Score=42.09  Aligned_cols=60  Identities=13%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|.+| .|. ...+. +.--.++-+..++.|++||+|++.+...+|.||.+|+|.+++-..
T Consensus       116 ~~~~~~P~~g~-~~eg~-i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~  176 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVT-VIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKV  176 (546)
T ss_pred             ceEEeCCCCCC-cceeE-EeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCC
Confidence            3566677 665 43343 333344446799999999999999999999999999999887554

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=84.77  E-value=2.2  Score=40.47  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             EEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           73 ITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        73 I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|.+| .|. ...+.-+. =.++-+..++.|+.||+|++.+...+|.||.+|+|..+.-.
T Consensus       119 ~~~~~~P~~g~-~~eg~i~~-w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~  178 (547)
T PRK11855        119 VVEVKVPDIGE-ITEVEVIE-WLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVK  178 (547)
T ss_pred             ceEEecCCCCC-cceeEEeE-EEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecC
Confidence            4566677 565 43333332 24444679999999999999999999999999999886544

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=84.01  E-value=2.1  Score=40.21  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=25.8

Q ss_pred             EEeecCceEEEEecCCeeeEeeeeeeEEEee
Q 029958          100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEV  130 (185)
Q Consensus       100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvev  130 (185)
                      .+.+|+.||+||+++++..+-+.=.|.|-.|
T Consensus        65 kls~GDvl~EVETDKAtmd~E~~ddGyLAKI   95 (470)
T KOG0557|consen   65 KLSAGDVLLEVETDKATMDVEAQDDGYLAKI   95 (470)
T ss_pred             ccCCCceEEEEecccceeeeeeccCCeeeee
Confidence            7999999999999999888777777766544

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=83.82  E-value=2.8  Score=38.18  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=33.2

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI  135 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~  135 (185)
                      +..++.|++||.|++.+....|.||.+|.|.+++-..-
T Consensus        27 Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G   64 (411)
T PRK11856         27 GDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEG   64 (411)
T ss_pred             cCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCC
Confidence            45899999999999999999999999999998775544

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=83.01  E-value=2.4  Score=40.36  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ..++.|++||+|++.+..+.|.|+++|+|.+++-+.
T Consensus        25 d~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~   60 (546)
T TIGR01348        25 DKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV   60 (546)
T ss_pred             CEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecC
Confidence            379999999999999999999999999999887654

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=82.85  E-value=0.84  Score=41.85  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEee
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEV  130 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvev  130 (185)
                      |+-+..++.++.+|+|+.++....|.||.+|.|.|+
T Consensus        94 K~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~  129 (457)
T KOG0559|consen   94 KKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITEL  129 (457)
T ss_pred             hCcccccccchhheeeeccceeeeccCCCcceeeEE
Confidence            333568999999999999999999999999999998

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=82.69  E-value=1.8  Score=40.09  Aligned_cols=39  Identities=8%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhc
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIK  136 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~  136 (185)
                      +..++.|++||+|++++...+|.||.+|.|.+++-...+
T Consensus        24 Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~   62 (435)
T TIGR01349        24 GDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT   62 (435)
T ss_pred             CCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC
Confidence            447899999999999999999999999999988766654

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=81.14  E-value=1.9  Score=32.20  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=29.3

Q ss_pred             EEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhcCccc
Q 029958          100 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGL  140 (185)
Q Consensus       100 ~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~~P~L  140 (185)
                      .|..|+.|++... .-.-.|+|||+|+|.+|.+...-++.-
T Consensus        51 ~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~~~~g~~   90 (101)
T PF13375_consen   51 KVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRPIPHGSK   90 (101)
T ss_pred             EEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeEcCCCCC
Confidence            5778888886632 214589999999999998877655443

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=81.01  E-value=1.6  Score=43.86  Aligned_cols=33  Identities=9%  Similarity=0.110  Sum_probs=29.6

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeee
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN  131 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN  131 (185)
                      ..|++|++|+.+++-+-+..|-||.+|+|.+|-
T Consensus      1099 ~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~ 1131 (1149)
T COG1038        1099 DKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131 (1149)
T ss_pred             CeecCCCeeeehhhhhhceeeecCCCceEeEEE
Confidence            478999999999988888899999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1hpc_A	131	Refined Structures At 2 Angstroms And 2.2 Angstroms		6e-06

>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The Two Forms Of The H-Protein, A Lipoamide-Containing Protein Of The Glycine Decarboxylase Length = 131

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 52  ANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVC 111
           +N L  +  AP+H   K EG +  +       D  G  V  +  +             V 
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60
Query: 112 TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGL 171
           +   +  V   + G ++EVN  L  +PGL+NSS   +G++  I P   D L+   SLLG 
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELE---SLLGA 117
Query: 172 EDYKRKREE 180
           ++Y +  EE
Sbjct: 118 KEYTKFCEE 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	2e-04
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	5e-04

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Length = 155

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 123 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKS---SLLGLEDYKRKRE 179
           + G + EVN+ L   P L+NS     G++  I    +D   ++S   +LL  E Y+    
Sbjct: 95  ISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLT 154

Query: 180 E 180
           E
Sbjct: 155 E 155

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Length = 137

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 123 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 175
             G ++EVN   +  P  + +     G++  +  +P         LL   +Y 
Sbjct: 85  ASGQIVEVNTAAVDDPATIATDPYGAGWLYSV--QPTA----VGELLTASEYA 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3klr_A	125	Glycine cleavage system H protein; antiparallel be	100.0
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	99.98
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	99.97
3mxu_A	143	Glycine cleavage system H protein; seattle structu	99.97
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	99.97
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	99.96
1hpc_A	131	H protein of the glycine cleavage system; transit	99.96
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.95
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	96.86
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	96.81
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.79
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	96.74
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	96.71
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.69
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	96.57
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	96.54
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.42
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.35
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	96.35
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	96.06
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	96.02
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	95.94
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.84
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	95.62
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	95.6
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	95.58
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	94.8
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	94.61
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	92.29
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	92.07
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	91.86
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	91.24
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	89.96
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	89.52
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	88.09
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	86.72
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	80.43

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=100.00  E-value=1.5e-32  Score=212.02  Aligned_cols=115  Identities=19%  Similarity=0.371  Sum_probs=104.7

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|+|+...  +++++|||  |++||+++|+|+||++| +|.                 .++.|++||+|++.+....|
T Consensus         6 t~~HeWv~~e--~~~~~vGI--Td~Aq~~lGdiv~velp~vG~-----------------~v~~G~~~~~VES~K~~sdi   64 (125)
T 3klr_A            6 TEKHEWVTTE--NGVGTVGI--SNFAQEALGDVVYCSLPEVGT-----------------KLNKQEEFGALESVKAASEL   64 (125)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred             CCCCEEEEEc--CCEEEEee--CHHHHhhCCCeEEEEeCCCCC-----------------EEcCCCEEEEEEEcceeeee
Confidence            4789999764  56999999  99999999999999999 876                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +||++|+|++||++|.++|+|||++||++|||+.+.+ +++++    +.||++++|.++.+.
T Consensus        65 ~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~e~----~~Ll~~~~Y~~~~~~  122 (125)
T 3klr_A           65 YSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSEL----DELMSEEAYEKYIKS  122 (125)
T ss_dssp             ECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHH
T ss_pred             ecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999996665 46666    889999999998753

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=99.98  E-value=1.7e-32  Score=218.20  Aligned_cols=119  Identities=20%  Similarity=0.258  Sum_probs=105.1

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|+|+... .+|+++|||  |++||+++|+|+||+|| +|+                 .|+.|++||+|+|.++...|
T Consensus        32 t~~HeWv~~e-gdg~~~VGI--Td~Aq~~LGdIvfVeLP~vG~-----------------~v~~Gd~~~~VESvKa~sdi   91 (155)
T 3hgb_A           32 TAEHEWIRRS-GDDTVRVGI--TDYAQSALGDVVFVQLPVIGT-----------------AVTAGETFGEVESTKSVSDL   91 (155)
T ss_dssp             CTTSEEEEEE-ETTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred             CCCCEEEEEc-CCcEEEEee--CHHHHHhcCCeEEEEcCCCCC-----------------EEeCCCEEEEEEecceeeee
Confidence            4789999775 467999999  99999999999999999 876                 68999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCc---cchhhhhccCCCHHHHHHHHh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKP---ADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~---~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      +|||+|+|++||++|.++|+|||++||++|||+.+.+..   ++.....+.|||+++|.++.+
T Consensus        92 ~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d~~~~~~~~el~~Ll~~~~Y~~~~~  154 (155)
T 3hgb_A           92 YAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLT  154 (155)
T ss_dssp             ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCTTTSCCHHHHHTTSBCHHHHHHHCC
T ss_pred             ecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECCcccccchhHHHhCCCHHHHHHHhc
Confidence            999999999999999999999999999999999777752   111223388999999999864

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=99.97  E-value=2.8e-32  Score=213.35  Aligned_cols=114  Identities=18%  Similarity=0.323  Sum_probs=103.7

Q ss_pred             CCCccEEEEE----eCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCC
Q 029958           41 KPGHDQYVYR----HANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNND  115 (185)
Q Consensus        41 ~~~hd~~~~~----h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~  115 (185)
                      +++|+|+...    ..+++++|||  |++||+++|+|+||+|| +|.                 .++.|++||+|++.+.
T Consensus        17 t~~HeWv~~~~~~~~e~~~~~VGI--Td~Aq~~lGdiv~VelP~vG~-----------------~v~~G~~~~~VES~K~   77 (137)
T 3tzu_A           17 TADHEWIDIAPGAATPDGPVRVGI--TSVAVEALGDLVFVQLPEVGE-----------------TVSAGESCGEVESTKT   77 (137)
T ss_dssp             CTTSEEESCCTTCCCCSSCEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTSEEEEEEESSE
T ss_pred             CCCCEEEEccCcccccCCEEEEee--CHHHHhhcCCeEEEEcCCCCC-----------------EEeCCCEEEEEEecce
Confidence            4789998632    3467999999  99999999999999999 876                 6999999999999999


Q ss_pred             eeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCHHHHHHHHh
Q 029958          116 SYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE  179 (185)
Q Consensus       116 ~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~~~~~~~~~~~Lls~eeY~~~~~  179 (185)
                      ..+|+|||+|+|++||++|.++|+|||++||++|||+.+.+.  ++    +.||++++|.++.+
T Consensus        78 ~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~--e~----~~Ll~~~~Y~~~~~  135 (137)
T 3tzu_A           78 VSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT--AV----GELLTASEYAGQNG  135 (137)
T ss_dssp             EEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE--EE----CCCBCHHHHHHHTT
T ss_pred             eeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh--hh----hhCCCHHHHHHHhc
Confidence            999999999999999999999999999999999999988775  55    88999999999864

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=99.97  E-value=1.3e-32  Score=216.49  Aligned_cols=113  Identities=21%  Similarity=0.333  Sum_probs=102.5

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|+|+...  +++++|||  |++||+++|+|+||+|| +|.                 .++.|++||+|++.+...+|
T Consensus        28 t~~HeWv~~e--g~~~~VGI--Td~Aq~~LGdIvfVelP~vG~-----------------~v~~Gd~~~~VES~Ka~sdi   86 (143)
T 3mxu_A           28 TQDHEWLSVE--GQVVTVGI--TDYAQEQLGDLVFIDLPQNGT-----------------KLSKGDAAAVVESVKAASDV   86 (143)
T ss_dssp             CSSSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred             CCCCEEEEEc--CCEEEEee--CHHHHhhcCCeEEEEcCCCCC-----------------EeeCCCEEEEEEecceeeee
Confidence            3689999764  45999999  99999999999999999 876                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHH
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKR  178 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~  178 (185)
                      +|||+|+|++||++|.++|+|||++||++|||+.+.+. ++++    +.|||+++|.++.
T Consensus        87 ~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~~el----~~Ll~~~~Y~~~~  142 (143)
T 3mxu_A           87 YAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQL----ERLLDEAAYKELI  142 (143)
T ss_dssp             ECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCTHHH----HHHHHTTSSEECC
T ss_pred             ecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHh
Confidence            99999999999999999999999999999999977764 5556    7899999998753

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=99.97  E-value=6.7e-30  Score=197.77  Aligned_cols=116  Identities=24%  Similarity=0.322  Sum_probs=105.2

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|+|+.. +.||+++|||  |+++|.++|+|++|++| +|.                 .|+.|++||+|++.+...+|
T Consensus        10 t~~heWv~~-~~~g~~~vGi--td~a~~~lG~i~~v~lp~vG~-----------------~V~~g~~l~~vEs~K~~~~i   69 (128)
T 3a7l_A           10 SKEHEWLRK-EADGTYTVGI--TEHAQELLGDMVFVDLPEVGA-----------------TVSAGDDCAVAESVKAASDI   69 (128)
T ss_dssp             CTTSEEEEE-CTTSCEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred             cCCcEEEEE-CCCcEEEEEE--ehHHhccCCceEEEEecCCCC-----------------EEeCCCEEEEEEecceeeEE
Confidence            468999875 4578999999  99999999999999998 775                 69999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++    +.||++++|.++.+.
T Consensus        70 ~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~  127 (128)
T 3a7l_A           70 YAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESEL----ESLLDATAYEALLED  127 (128)
T ss_dssp             ECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGCBCHHHHHHHHHT
T ss_pred             ecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHhc
Confidence            99999999999999999999999999999999977664 5566    889999999998763

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=99.96  E-value=3.3e-29  Score=193.94  Aligned_cols=116  Identities=27%  Similarity=0.355  Sum_probs=104.8

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...  +++++|||  |+++|.++|+|++|++| +|.                 .++.|++||+|++.+...+|
T Consensus        10 t~~heWv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~vG~-----------------~V~~g~~l~~vEs~K~~~~i   68 (128)
T 1onl_A           10 TKTHEWALPE--GDTVLVGI--TDYAQDALGDVVYVELPEVGR-----------------VVEKGEAVAVVESVKTASDI   68 (128)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECBCTTC-----------------EECTTCEEEEEEESSBEEEE
T ss_pred             CCCcEEEEec--CCEEEEEe--ehHHhhcCCCceEEEecCCCC-----------------EEeCCCEEEEEEEcceeeEE
Confidence            4789998765  34999999  99999999999999998 776                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREEC  181 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~~  181 (185)
                      +||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++    +.||++++|.++.+..
T Consensus        69 ~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~~  127 (128)
T 1onl_A           69 YAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDL----DELLDAGGYQEVLESE  127 (128)
T ss_dssp             ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHHT
T ss_pred             ecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHhcc
Confidence            99999999999999999999999999999999976664 5566    8899999999987653

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=99.96  E-value=4.7e-29  Score=193.76  Aligned_cols=115  Identities=29%  Similarity=0.456  Sum_probs=104.6

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...  +++++|||  |+++|.++|+|++|++| +|.                 .|+.|++||+|++.+...+|
T Consensus        10 t~~HeWv~~e--~~~~~vGi--td~a~~~lG~i~~v~lp~~G~-----------------~V~~g~~l~~vEs~K~~~~I   68 (131)
T 1hpc_A           10 APSHEWVKHE--GSVATIGI--TDHAQDHLGEVVFVELPEPGV-----------------SVTKGKGFGAVESVKATSDV   68 (131)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECBTSEEEEEEESSCEEEE
T ss_pred             CCCCEEEEEc--CCEEEEEE--ehhhcccCCCceEEEecCCCC-----------------EEeCCCEEEEEEecceeEEE
Confidence            4789999765  57999999  99999999999999997 775                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +||++|+|++||..|.++|++||++||++|||+.+.+ +++++    +.||++++|.++.+.
T Consensus        69 ~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~  126 (131)
T 1hpc_A           69 NSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE  126 (131)
T ss_dssp             EBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred             ecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999997665 45666    889999999998763

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.95  E-value=1.7e-27  Score=186.07  Aligned_cols=115  Identities=21%  Similarity=0.361  Sum_probs=104.4

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+...  +++++|||  |++++..+|+|++|++| +|.                 .|+.|++||.|++.+...+|
T Consensus        19 t~~HeWv~~e--~~~~~vGi--t~~a~~~lG~i~~V~lp~vGd-----------------~V~~Gd~l~~VEs~K~~~eI   77 (136)
T 1zko_A           19 TKTHEWVSIE--DKVATVGI--TNHAQEQLGDVVYVDLPEVGR-----------------EVKKGEVVASIESVKAAADV   77 (136)
T ss_dssp             CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECTTCEEEEEEESSCEEEE
T ss_pred             CCCCEEEEec--CCEEEEee--EhhhcccCCCcEEEEecCCCC-----------------EEeCCCEEEEEEEccEeEEE
Confidence            4789999765  56999999  99999999999999997 775                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +||++|+|++||.+|.++|+++|++||++|||+.+.+. ++++    ++||++++|.++.+.
T Consensus        78 ~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~~~~----~~Ll~~~~Y~~~~~~  135 (136)
T 1zko_A           78 YAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGEL----EDLLDEQAYQEFCAQ  135 (136)
T ss_dssp             ECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHC
T ss_pred             ecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCHHHH----HhCCCHHHHHHHHhc
Confidence            99999999999999999999999999999999977664 5556    889999999998763

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=96.86  E-value=0.0015  Score=45.59  Aligned_cols=35  Identities=11%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ..+++|++|+.|++.+....|+||++|.|.+++ ..
T Consensus        25 d~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~   59 (84)
T 2kcc_A           25 GHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RP   59 (84)
T ss_dssp             EEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CT
T ss_pred             CEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CC
Confidence            479999999999999999999999999999988 55

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=96.81  E-value=0.0023  Score=45.57  Aligned_cols=37  Identities=14%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++||.|++.+....|+||.+|.|.+++-..
T Consensus        29 Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~   65 (93)
T 1k8m_A           29 GDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL   65 (93)
T ss_dssp             TCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCS
T ss_pred             cCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCC
Confidence            4589999999999999999999999999999988654

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.79  E-value=0.0017  Score=43.15  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus        19 ~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~   54 (72)
T 1z6h_A           19 DQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE   54 (72)
T ss_dssp             CEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCT
T ss_pred             CEECCCCEEEEEECCccEEEEECCCCcEEEEEecCC
Confidence            378999999999998888999999999999987433

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=96.74  E-value=0.0014  Score=44.67  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=33.0

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..++.|++|+++++.+....|+||++|.|.++|-..
T Consensus        25 G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~   61 (80)
T 1qjo_A           25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV   61 (80)
T ss_dssp             TCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCT
T ss_pred             CCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCC
Confidence            4489999999999999989999999999999988544

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=96.71  E-value=0.00049  Score=47.25  Aligned_cols=51  Identities=16%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP  156 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p  156 (185)
                      ..+++|++|+.+++.+....|+||++|.|.++|-..-+..       ....||+.+.+
T Consensus        27 d~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v-------~~g~~l~~i~~   77 (81)
T 1gjx_A           27 DTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKI-------SEGGLIVVVEA   77 (81)
T ss_dssp             CBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEE-------CSSSCCCEECC
T ss_pred             CEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEe-------CCCCEEEEEEe
Confidence            3689999999999999999999999999999987664332       22357776654

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.69  E-value=0.001  Score=45.18  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++|+.+++.+....|+||++|.|.++|-..
T Consensus        26 G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~   62 (77)
T 2l5t_A           26 GDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE   62 (77)
T ss_dssp             TCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCT
T ss_pred             CCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence            4579999999999999999999999999999988654

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=96.57  E-value=0.003  Score=44.09  Aligned_cols=37  Identities=8%  Similarity=0.081  Sum_probs=33.0

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..++.|++||.|++.+....|+||.+|.|.+++-.-
T Consensus        30 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~   66 (87)
T 3crk_C           30 GEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE   66 (87)
T ss_dssp             TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred             CCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECC
Confidence            4579999999999999999999999999999987544

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=96.54  E-value=0.0063  Score=41.39  Aligned_cols=37  Identities=11%  Similarity=0.138  Sum_probs=33.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++|+.+++.+....|+||++|.|.++|-..
T Consensus        26 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~   62 (79)
T 1ghj_A           26 GEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE   62 (79)
T ss_dssp             TSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred             CCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCC
Confidence            4589999999999999999999999999999988654

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.42  E-value=0.0051  Score=41.35  Aligned_cols=34  Identities=9%  Similarity=0.014  Sum_probs=30.4

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      ..+++|++|+++.+.+....|+||++|.|.++|-
T Consensus        28 ~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~   61 (77)
T 1dcz_A           28 DTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLV   61 (77)
T ss_dssp             CEECTTSEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred             CEEcCCCEEEEEEccceeEEEECCCCEEEEEEec
Confidence            3789999999999888788999999999999873

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.35  E-value=0.0049  Score=40.90  Aligned_cols=35  Identities=3%  Similarity=-0.060  Sum_probs=31.0

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..+++|++|+++++.+....|+||++|.|.++|-
T Consensus        24 G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~   58 (74)
T 2d5d_A           24 GDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILV   58 (74)
T ss_dssp             TCEECTTCEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred             CCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEc
Confidence            34789999999999988888999999999998873

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=96.35  E-value=0.0046  Score=42.09  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus        23 Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~   59 (79)
T 1iyu_A           23 GDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL   59 (79)
T ss_dssp             TCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCT
T ss_pred             CCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence            4478999999999999999999999999999998544

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=96.06  E-value=0.016  Score=44.00  Aligned_cols=64  Identities=9%  Similarity=0.014  Sum_probs=46.7

Q ss_pred             CCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           70 EGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        70 lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +-.+..|.+| .|.....+.-++=.+|. +..|+.|++||.|++.+....|.||.+|.|.+++-.-
T Consensus        24 ~p~~~~i~~P~lG~~~~~G~V~~~~V~~-Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~   88 (128)
T 1y8o_B           24 YPPHMQVLLPALSPTMTMGTVQRWEKKV-GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE   88 (128)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCT-TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred             CCcceeEEcCCCCCCcccEEEEEEecCC-CCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCC
Confidence            4445667777 66544334333333444 5689999999999999999999999999999987544

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.0081  Score=43.19  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..++.|++||.|++.+....|.||.+|.|.+++-.-
T Consensus        32 Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~   68 (98)
T 2dnc_A           32 GEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE   68 (98)
T ss_dssp             TCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCT
T ss_pred             CCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCC
Confidence            4579999999999999999999999999999876543

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=95.94  E-value=0.0086  Score=40.74  Aligned_cols=36  Identities=11%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..+++|+.|+.+++.+....|+||++|.|.++|-.
T Consensus        30 G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~   65 (80)
T 1bdo_A           30 GQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE   65 (80)
T ss_dssp             TCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred             cCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcC
Confidence            558999999999999988899999999999998843

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.84  E-value=0.0033  Score=44.73  Aligned_cols=37  Identities=8%  Similarity=0.154  Sum_probs=12.9

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++|+++++.+....|+||++|.|.++|-..
T Consensus        44 Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~   80 (94)
T 2jku_A           44 GDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA   80 (94)
T ss_dssp             TCCCCTTCCCEEEEC----------------------
T ss_pred             CCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCC
Confidence            3478999999999998888999999999999887543

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=95.62  E-value=0.014  Score=41.66  Aligned_cols=37  Identities=8%  Similarity=0.098  Sum_probs=32.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|++|++|+++++.+....|+||++|.|.++|-..
T Consensus        33 Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~   69 (99)
T 2ejm_A           33 GDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYRE   69 (99)
T ss_dssp             TEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCT
T ss_pred             CCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCC
Confidence            3479999999999998888999999999999988443

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=95.60  E-value=0.001  Score=46.34  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI  135 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L~  135 (185)
                      +..++.|++|+.|++.+....|+||++|.|.++|-..-
T Consensus        21 Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G   58 (85)
T 2k7v_A           21 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG   58 (85)
T ss_dssp             SCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTT
T ss_pred             CCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCC
Confidence            34789999999999999999999999999999987654

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=95.58  E-value=0.01  Score=43.55  Aligned_cols=37  Identities=5%  Similarity=0.015  Sum_probs=32.7

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..|+.|++||.|++.+....|.||.+|.|.+++-..
T Consensus        32 Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~   68 (108)
T 2dne_A           32 GDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE   68 (108)
T ss_dssp             TCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCT
T ss_pred             CCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCC
Confidence            4589999999999999999999999999999876433

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.80  E-value=0.028  Score=40.09  Aligned_cols=34  Identities=9%  Similarity=0.090  Sum_probs=30.3

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..+++|++|+.+++.+....|+||.+|.|. ++-
T Consensus        36 Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v   69 (100)
T 2dn8_A           36 GGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIK   69 (100)
T ss_dssp             TEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECS
T ss_pred             cCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEe
Confidence            4479999999999999988999999999998 763

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=94.61  E-value=0.004  Score=42.66  Aligned_cols=37  Identities=14%  Similarity=0.088  Sum_probs=32.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      +..+++|++||.+++.+....|+||++|.|.+++-..
T Consensus        27 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~   63 (80)
T 1pmr_A           27 GDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE   63 (80)
T ss_dssp             TCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCT
T ss_pred             cCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCC
Confidence            4578999999999999999999999999999877543

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=92.29  E-value=0.088  Score=38.00  Aligned_cols=35  Identities=3%  Similarity=0.087  Sum_probs=28.0

Q ss_pred             eEEeecCceEEEEecCC-----------------------------eeeEeeeeeeEEEeeehh
Q 029958           99 QHFESNTAVCKVCTNND-----------------------------SYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~-----------------------------~~~I~spV~G~vvevN~~  133 (185)
                      ..|++|++|+++.+...                             ...|+||++|.|.++|-.
T Consensus        21 ~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~   84 (116)
T 2k32_A           21 DKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVN   84 (116)
T ss_dssp             SEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCC
T ss_pred             CEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECC
Confidence            37899999999976533                             358999999999988653

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=92.07  E-value=0.14  Score=48.28  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=34.4

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      .+-+..|+.|++|+.|++.+-+.+|.||.+|+|.+++-.
T Consensus       628 v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~  666 (681)
T 3n6r_A          628 VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINAS  666 (681)
T ss_dssp             CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCC
T ss_pred             eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeC
Confidence            344678999999999999999999999999999998744

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=91.86  E-value=0.25  Score=39.30  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=32.3

Q ss_pred             cceEEeecCceEEEEecCCe-eeEeeeeeeEEEeeehh
Q 029958           97 NAQHFESNTAVCKVCTNNDS-YIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        97 g~~~l~~~~~l~~I~s~~~~-~~I~spV~G~vvevN~~  133 (185)
                      -+-.|..|+.|+.|.+.++. --|+||++|.|+.||+.
T Consensus       118 ~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~  155 (169)
T 3d4r_A          118 FGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI  155 (169)
T ss_dssp             CSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred             cCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence            35578999999999888775 69999999999999976

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=89.96  E-value=0.27  Score=49.62  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ++-+..|+.|++||.|++.|.+.+|.||++|+|.+++-.
T Consensus      1183 v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~ 1221 (1236)
T 3va7_A         1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHK 1221 (1236)
T ss_dssp             SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCC
T ss_pred             cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeC
Confidence            334568999999999999999999999999999998643

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=89.52  E-value=0.31  Score=48.77  Aligned_cols=40  Identities=8%  Similarity=0.030  Sum_probs=34.8

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      .+-+..|++|++||.|++.+.+.+|.||++|+|.+++-.-
T Consensus      1093 v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~ 1132 (1150)
T 3hbl_A         1093 VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNN 1132 (1150)
T ss_dssp             CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCT
T ss_pred             eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCC
Confidence            3446789999999999999999999999999999987543

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=88.09  E-value=0.095  Score=46.99  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..|+.|++||+|++.+.+.+|.||.+|+|.++.-.
T Consensus        27 Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~   62 (428)
T 3dva_I           27 GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP   62 (428)
T ss_dssp             ------------------------------------
T ss_pred             CCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeC
Confidence            347999999999999999999999999999776544

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=80.43  E-value=0.55  Score=44.82  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..|++|++|+.|++.+-+..|.||.+|+|.+++-
T Consensus       668 Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v  702 (718)
T 3bg3_A          668 GAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHV  702 (718)
T ss_dssp             TCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCC
T ss_pred             CCeeCCCCEEEEEecccceeEEecCCCeEEEEEec
Confidence            56899999999999999999999999999987763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1hpca_	131	b.84.1.1 (A:) Protein H of glycine cleavage system	6e-17
d1onla_	127	b.84.1.1 (A:) Protein H of glycine cleavage system	4e-11

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Length = 131

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

 Score = 71.1 bits (174), Expect = 6e-17
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 61  APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVR 120
           AP+H   K EG +  +       D  G  V  +  +             V +   +  V 
Sbjct: 10  APSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVN 69

Query: 121 CCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREE 180
             + G ++EVN  L  +PGL+NSS   +G++  I P   D L+   SLLG ++Y +  EE
Sbjct: 70  SPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELE---SLLGAKEYTKFCEE 126

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Length = 127

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 61  APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVR 120
             TH     EG    V       D  G  V  +  +  +  E   AV  V +   +  + 
Sbjct: 9   TKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIY 68

Query: 121 CCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKREE 180
             V G ++EVN  L K P L+N     EG+I  +  KP D   +   LL    Y+   E 
Sbjct: 69  APVAGEIVEVNLALEKTPELVNQDPYGEGWIFRL--KPRDMGDLD-ELLDAGGYQEVLES 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	99.97
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	99.97
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	97.23
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.99
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	96.83
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.57
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.5
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.26
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	96.01
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.89
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	95.42
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	94.43

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=99.97  E-value=9e-31  Score=201.56  Aligned_cols=115  Identities=29%  Similarity=0.455  Sum_probs=104.7

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+..  .+++++|||  |++||+.+|+|++|++| +|.                 .+++|+.|++|++.++++.|
T Consensus        10 t~~H~Wv~~--e~~~~~vGi--t~~a~~~lG~i~~v~lp~~g~-----------------~v~~g~~~~~iEs~k~~~~i   68 (131)
T d1hpca_          10 APSHEWVKH--EGSVATIGI--TDHAQDHLGEVVFVELPEPGV-----------------SVTKGKGFGAVESVKATSDV   68 (131)
T ss_dssp             CTTSEEEEE--ETTEEEEEE--CHHHHHHHCSEEEEECCCTTC-----------------EECBTSEEEEEEESSCEEEE
T ss_pred             CCCeEEEEe--cCCEEEEEE--CHHHHhhhhhheeecCCCCCc-----------------cccCCCceEEEEeecccccc
Confidence            478999864  367999999  99999999999999999 775                 79999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p~-~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +||++|+|+++|+.|.++|++||++||++|||+.+.+. ++++    +.||+.++|.++.+.
T Consensus        69 ~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~~d~~~~----~~Ll~~~~Y~~~~~e  126 (131)
T d1hpca_          69 NSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE  126 (131)
T ss_dssp             EBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred             cCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEECCHHHH----HhCCCHHHHHHHHhh
Confidence            99999999999999999999999999999999977664 5556    789999999998765

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.4e-30  Score=199.46  Aligned_cols=115  Identities=27%  Similarity=0.361  Sum_probs=104.0

Q ss_pred             CCCccEEEEEeCCcEEEEeecCChHHHhcCCCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeE
Q 029958           41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIV  119 (185)
Q Consensus        41 ~~~hd~~~~~h~Ng~~~vGiapt~~a~~~lg~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I  119 (185)
                      +++|.|+.. . +++++|||  |++||+++|+|++|+|| +|.                 .+++|+++++|++.++++.|
T Consensus         9 s~~H~Wv~~-~-~~~~~iGi--t~~a~~~lG~i~~v~lp~~g~-----------------~v~~g~~~~~iEs~k~~~~i   67 (127)
T d1onla_           9 TKTHEWALP-E-GDTVLVGI--TDYAQDALGDVVYVELPEVGR-----------------VVEKGEAVAVVESVKTASDI   67 (127)
T ss_dssp             CTTSEEEEE-E-TTEEEEEE--CHHHHHHHCSEEEEECBCTTC-----------------EECTTCEEEEEEESSBEEEE
T ss_pred             CCCcEEEEe-c-CCEEEEEe--CHHHHhhccccccccCCCCCc-----------------hhcCCCceEEEeeccceeec
Confidence            368999854 3 57999999  99999999999999999 775                 68999999999999999999


Q ss_pred             eeeeeeEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029958          120 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE  180 (185)
Q Consensus       120 ~spV~G~vvevN~~L~~~P~Lln~~P~~~GWlaii~p-~~~~~~~~~~~Lls~eeY~~~~~~  180 (185)
                      +|||+|+|+++|+.|.++|++||++||++|||+.+.+ ++.++    +.||+.++|.++.+.
T Consensus        68 ~sPvsG~Vv~vN~~l~~~P~lin~dpy~~gWl~~ik~~d~~~~----~~Ll~~~~Y~~~l~~  125 (127)
T d1onla_          68 YAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDL----DELLDAGGYQEVLES  125 (127)
T ss_dssp             ECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHH
T ss_pred             cCCccceEEEEhhhhhhCHHHhcCCCCCCCEEEEEEECCHHHH----HHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999997765 45566    889999999998764

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00027  Score=48.87  Aligned_cols=63  Identities=14%  Similarity=0.235  Sum_probs=43.1

Q ss_pred             CCEEEEEcC-CCCcccCCceeeccccccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           71 GGITAVDFN-VGKSDRSGFKVTGKRKKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        71 g~I~~V~~~-vg~~~~~~~~v~gk~Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ++|+.+.+| .|.....+.-+.= .++-+..+++|++||.|++.+...+|.||.+|+|.+++-..
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w-~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~   65 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEW-YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL   65 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEE-CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCS
T ss_pred             CccEEEECCCCCCCceeEEEEEE-EcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCC
Confidence            345555566 4532221221222 23335689999999999999999999999999999887544

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.99  E-value=0.00051  Score=46.16  Aligned_cols=35  Identities=9%  Similarity=0.040  Sum_probs=31.9

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ..|+.|++||.+++.+..++|+||++|.|.+++-+
T Consensus        28 d~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~   62 (77)
T d1dcza_          28 DTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK   62 (77)
T ss_dssp             CEECTTSEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred             CEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeC
Confidence            37999999999999999999999999999998744

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.83  E-value=0.0014  Score=44.28  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehhh
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL  134 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~L  134 (185)
                      ++-+..+++|++||.|++.+.++.|.||.+|+|.+++-.-
T Consensus        23 v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~   62 (79)
T d1ghja_          23 KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE   62 (79)
T ss_dssp             SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred             cCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCC
Confidence            3345689999999999999999999999999999887443

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.57  E-value=0.00099  Score=44.87  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=31.7

Q ss_pred             eEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           99 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        99 ~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ..++.|++||.|++.+..++|.||.+|+|.++.-.
T Consensus        24 d~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~   58 (79)
T d1iyua_          24 DLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK   58 (79)
T ss_dssp             CBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCC
T ss_pred             CEEecCceEEEEEecCcEEEEEeccccEEEEEeeC
Confidence            37999999999999999999999999999998643

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.00053  Score=46.56  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..+++|++||.|++.+.+++|.||.+|+|.+++-.
T Consensus        26 Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~   61 (80)
T d1laba_          26 GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP   61 (80)
T ss_dssp             CCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSC
T ss_pred             CCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeC
Confidence            458999999999999999999999999999887643

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0054  Score=41.14  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..++.|++||.|++.+.+.+|.||.+|+|.+++-.
T Consensus        25 Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~   60 (80)
T d1qjoa_          25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN   60 (80)
T ss_dssp             TCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCC
T ss_pred             CCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeC
Confidence            447999999999999999999999999999988743

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0042  Score=43.77  Aligned_cols=35  Identities=9%  Similarity=0.131  Sum_probs=31.9

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..|+.|++||.|++++....|.||.+|.|.++.-
T Consensus        30 Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v   64 (102)
T d1y8ob1          30 GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV   64 (102)
T ss_dssp             TCEECTTCEEEEEECSSCEEEEECCSCEEEEEESS
T ss_pred             CCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEE
Confidence            45899999999999999999999999999998743

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0041  Score=41.98  Aligned_cols=36  Identities=11%  Similarity=0.124  Sum_probs=32.8

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      +..++.|++||.|++.+-..+|.||.+|+|.+++-+
T Consensus        30 Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~   65 (80)
T d1bdoa_          30 GQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE   65 (80)
T ss_dssp             TCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred             CCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeC
Confidence            457999999999999999999999999999999743

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.42  E-value=0.0021  Score=43.40  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             ceEEeecCceEEEEecCCeeeEeeeeeeEEEeeeh
Q 029958           98 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN  132 (185)
Q Consensus        98 ~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~  132 (185)
                      +..+++|++||.|++.+...+|.||.+|+|.+++-
T Consensus        26 Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v   60 (81)
T d1gjxa_          26 GDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV   60 (81)
T ss_dssp             SCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCC
T ss_pred             CCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEe
Confidence            45899999999999999999999999999987753

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.0013  Score=44.48  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             cccceEEeecCceEEEEecCCeeeEeeeeeeEEEeeehh
Q 029958           95 KKNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR  133 (185)
Q Consensus        95 Kkg~~~l~~~~~l~~I~s~~~~~~I~spV~G~vvevN~~  133 (185)
                      ++-+..++.|++||.|++.+..+.|.||.+|.|.+++-.
T Consensus        24 v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~   62 (80)
T d1pmra_          24 KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED   62 (80)
T ss_dssp             CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTC
T ss_pred             eCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeC
Confidence            333568999999999999999999999999999877543