Citrus Sinensis ID: 030008
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZKQ8 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.644 | 9e-72 | |
| Q96BM9 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.639 | 3e-71 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.644 | 5e-71 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.644 | 5e-71 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | no | no | 0.994 | 0.983 | 0.644 | 5e-71 | |
| Q6P8C8 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.639 | 7e-71 | |
| Q9VHV5 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.989 | 0.646 | 8e-71 | |
| Q6NZW8 | 186 | ADP-ribosylation factor-l | no | no | 0.994 | 0.983 | 0.644 | 1e-70 | |
| Q8VEH3 | 186 | ADP-ribosylation factor-l | no | no | 0.994 | 0.983 | 0.633 | 2e-70 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | no | 0.994 | 0.983 | 0.639 | 2e-70 |
| >sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 269 bits (687), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W R+LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Gallus gallus (taxid: 9031) |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 117/183 (63%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q6P8C8|ARL8A_XENTR ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 117/183 (63%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD D + S++ELH+LL+K L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL ++ L + M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q9VHV5|ARL8_DROME ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 119/184 (64%), Positives = 150/184 (81%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L W +S+F+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
+GNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD D L SR+ELH LL+KP L+
Sbjct: 62 RGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLA 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL + L + M L SI DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSKS 184
KS+S
Sbjct: 182 KSQS 185
|
May play a role in lysosome motility (PubMed:16537643). Essential role in chromosome segregation (PubMed:15331635). Drosophila melanogaster (taxid: 7227) |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W +SLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALINRLLDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 116/183 (63%), Positives = 152/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D GAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 117/183 (63%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRF+SMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| 388491766 | 184 | unknown [Lotus japonicus] | 1.0 | 1.0 | 0.983 | 1e-101 | |
| 371501270 | 184 | ADP-ribosylation factor-like 8a [Nicotia | 1.0 | 1.0 | 0.978 | 1e-101 | |
| 357482557 | 184 | ADP-RIBOSYLATION FACTOR-like protein [Me | 1.0 | 1.0 | 0.978 | 1e-100 | |
| 371501272 | 184 | ADP-ribosylation factor-like 8b [Nicotia | 1.0 | 1.0 | 0.961 | 1e-100 | |
| 147858134 | 184 | hypothetical protein VITISV_035770 [Viti | 1.0 | 1.0 | 0.956 | 1e-99 | |
| 359807425 | 184 | uncharacterized protein LOC100776101 [Gl | 1.0 | 1.0 | 0.967 | 1e-99 | |
| 351727264 | 184 | uncharacterized protein LOC100499793 [Gl | 1.0 | 1.0 | 0.967 | 4e-99 | |
| 255568609 | 1010 | GTP binding protein, putative [Ricinus c | 0.983 | 0.179 | 0.961 | 7e-99 | |
| 351721539 | 184 | uncharacterized protein LOC100526879 [Gl | 1.0 | 1.0 | 0.951 | 2e-98 | |
| 255629067 | 184 | unknown [Glycine max] | 1.0 | 1.0 | 0.961 | 3e-98 |
| >gi|388491766|gb|AFK33949.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/184 (98%), Positives = 183/184 (99%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGALSKQALTD+M LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501270|dbj|BAL44262.1| ADP-ribosylation factor-like 8a [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/184 (97%), Positives = 183/184 (99%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNLSIS+SELHDLLNKPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNLSISKSELHDLLNKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCC+MISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357482557|ref|XP_003611565.1| ADP-RIBOSYLATION FACTOR-like protein [Medicago truncatula] gi|355512900|gb|AES94523.1| ADP-RIBOSYLATION FACTOR-like protein [Medicago truncatula] gi|388520943|gb|AFK48533.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/184 (97%), Positives = 182/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDK GALSKQALTD+M LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501272|dbj|BAL44263.1| ADP-ribosylation factor-like 8b [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/184 (96%), Positives = 182/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MG+WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS SELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGA SKQALTD+MGLKSITDREVCC+MISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGAQSKQALTDQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858134|emb|CAN83936.1| hypothetical protein VITISV_035770 [Vitis vinifera] gi|296086990|emb|CBI33252.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 182/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFR+MWERYCRAVSAIVYVVDAADPDN+ IS+SELHDLL+KPSL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRTMWERYCRAVSAIVYVVDAADPDNIGISKSELHDLLSKPSLN 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGALSK ALT+EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKHALTEEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807425|ref|NP_001241133.1| uncharacterized protein LOC100776101 [Glycine max] gi|255640961|gb|ACU20760.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/184 (96%), Positives = 181/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN+SISRSELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDK ALSKQALTD+M LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351727264|ref|NP_001236131.1| uncharacterized protein LOC100499793 [Glycine max] gi|255626649|gb|ACU13669.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/184 (96%), Positives = 180/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV FNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVRFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL+KPSL
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLG 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDK GALSKQALTD+M LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568609|ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis] gi|223535436|gb|EEF37106.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 176/183 (96%), Positives = 180/183 (98%), Gaps = 2/183 (1%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL+ISRSELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLNISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL--VK 178
GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL K
Sbjct: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLQIQK 180
Query: 179 HSK 181
H++
Sbjct: 181 HNR 183
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351721539|ref|NP_001235421.1| uncharacterized protein LOC100526879 [Glycine max] gi|255631048|gb|ACU15888.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/184 (95%), Positives = 181/184 (98%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWE+FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNV+ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWESFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLG QPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS+SELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGRQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISKSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPG LSK+ALTD+M LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGVLSKEALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255629067|gb|ACU14878.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/184 (96%), Positives = 180/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN+SISRSELHDLL+KPSLS
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISRSELHDLLSKPSLS 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDK ALSKQALTD+M LKSITDREV CFMISCKNSTNIDSVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVRCFMISCKNSTNIDSVIDWLVKHS 180
Query: 181 KSKS 184
KSKS
Sbjct: 181 KSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 184 | ||||||
| TAIR|locus:2097355 | 184 | ARLA1C "ADP-ribosylation facto | 1.0 | 1.0 | 0.940 | 1.2e-90 | |
| TAIR|locus:2158591 | 184 | ARLA1D "ADP-ribosylation facto | 1.0 | 1.0 | 0.923 | 2.5e-90 | |
| TAIR|locus:2151734 | 184 | ARLA1A "ADP-ribosylation facto | 0.989 | 0.989 | 0.818 | 4.1e-81 | |
| TAIR|locus:2097340 | 176 | ARLA1B "ADP-ribosylation facto | 0.907 | 0.948 | 0.814 | 8.9e-70 | |
| UNIPROTKB|Q5ZKQ8 | 186 | ARL8A "ADP-ribosylation factor | 0.994 | 0.983 | 0.644 | 5.8e-66 | |
| UNIPROTKB|Q96BM9 | 186 | ARL8A "ADP-ribosylation factor | 0.994 | 0.983 | 0.639 | 1.5e-65 | |
| FB|FBgn0037551 | 186 | Gie "GTPase indispensable for | 1.0 | 0.989 | 0.646 | 2.5e-65 | |
| UNIPROTKB|F2Z4I5 | 186 | ARL8B "ADP-ribosylation factor | 0.994 | 0.983 | 0.644 | 3.2e-65 | |
| UNIPROTKB|E2RE13 | 186 | ARL8B "Uncharacterized protein | 0.994 | 0.983 | 0.644 | 3.2e-65 | |
| UNIPROTKB|Q9NVJ2 | 186 | ARL8B "ADP-ribosylation factor | 0.994 | 0.983 | 0.644 | 3.2e-65 |
| TAIR|locus:2097355 ARLA1C "ADP-ribosylation factor-like A1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 173/184 (94%), Positives = 180/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGL EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLLEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLS+S+SELHDLL+K SL+
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGALSK+ALTDEMGL S+TDREVCCFMISCKNSTNID VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KSKS 184
KSK+
Sbjct: 181 KSKN 184
|
|
| TAIR|locus:2158591 ARLA1D "ADP-ribosylation factor-like A1D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 170/184 (92%), Positives = 180/184 (97%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLW+A LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KG+VTIKLWDLGGQPRFRSMWERYCR+VSAIVYVVDAADPDNLS+S+SELHDLL+K SL+
Sbjct: 61 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLLVLGNKIDKPGALSK+ALTDEMGLKS+TDREVCCFMISCKNSTNID VIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180
Query: 181 KSKS 184
KS +
Sbjct: 181 KSSN 184
|
|
| TAIR|locus:2151734 ARLA1A "ADP-ribosylation factor-like A1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 149/182 (81%), Positives = 171/182 (93%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGLW++ LNWLRSLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1 MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WDLGGQ RFR+MWERYCR VSAIVYV+DAAD D++ ISRSEL+DLL KPSL+
Sbjct: 61 KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLN 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIPLL+LGNKIDK ALSKQAL D++GL+S+TDREVCC+MISCK+S NID+VIDWL+KHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHS 180
Query: 181 KS 182
++
Sbjct: 181 RT 182
|
|
| TAIR|locus:2097340 ARLA1B "ADP-ribosylation factor-like A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 136/167 (81%), Positives = 148/167 (88%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EMELSL+GLQN+GKTSLVNVVATG YSEDMIPTVGFNMRKVTK NV I+LWDLGGQPRF
Sbjct: 10 KEMELSLVGLQNSGKTSLVNVVATGEYSEDMIPTVGFNMRKVTKENVAIRLWDLGGQPRF 69
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R MWERYCRAVS IVYVVDAAD +NLS+SRSELHDLL+ SL GIPLLVLGNKID GAL
Sbjct: 70 RCMWERYCRAVSMIVYVVDAADTENLSVSRSELHDLLSNASLIGIPLLVLGNKIDIHGAL 129
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
SK+ALT+EMGL S+T REVCC MISCKN T ID + DWLV HSKSK+
Sbjct: 130 SKEALTEEMGLSSVTSREVCCLMISCKNPTTIDQLTDWLVNHSKSKN 176
|
|
| UNIPROTKB|Q5ZKQ8 ARL8A "ADP-ribosylation factor-like protein 8A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 118/183 (64%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W R+LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|Q96BM9 ARL8A "ADP-ribosylation factor-like protein 8A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 117/183 (63%), Positives = 153/183 (83%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L+ L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| FB|FBgn0037551 Gie "GTPase indispensable for equal segregation of chromosomes" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 119/184 (64%), Positives = 150/184 (81%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L W +S+F+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+T
Sbjct: 2 LALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKIT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
+GNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD D L SR+ELH LL+KP L+
Sbjct: 62 RGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLA 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D PGAL + L + M L SI DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSKS 184
KS+S
Sbjct: 182 KSQS 185
|
|
| UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
| UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
+ L L+W RSLF+K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVT
Sbjct: 2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
KGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
GIP+LVLGNK D P AL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HS
Sbjct: 122 GIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 181
Query: 181 KSK 183
KS+
Sbjct: 182 KSR 184
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.6467 | 1.0 | 0.9892 | yes | no |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6393 | 0.9945 | 0.9838 | yes | no |
| Q4R4S4 | ARL8B_MACFA | No assigned EC number | 0.6338 | 0.9945 | 0.9838 | N/A | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.3294 | 0.9347 | 0.9555 | yes | no |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6448 | 0.9945 | 0.9838 | yes | no |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.6043 | 0.9891 | 0.9837 | yes | no |
| Q5ZKQ8 | ARL8A_CHICK | No assigned EC number | 0.6448 | 0.9945 | 0.9838 | yes | no |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6448 | 0.9945 | 0.9838 | yes | no |
| Q96BM9 | ARL8A_HUMAN | No assigned EC number | 0.6393 | 0.9945 | 0.9838 | yes | no |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6393 | 0.9945 | 0.9838 | yes | no |
| Q6P8C8 | ARL8A_XENTR | No assigned EC number | 0.6393 | 0.9945 | 0.9838 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00004196001 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_623, whole genome shotgun sequence); (184 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 184 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-107 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 3e-59 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-50 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-43 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-39 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 5e-37 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 9e-37 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 9e-37 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 3e-35 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-34 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 7e-34 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 7e-34 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-33 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 3e-31 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 3e-31 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-30 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-29 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-28 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 9e-27 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-25 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 8e-22 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 9e-22 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-21 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 9e-21 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 2e-18 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 2e-18 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 8e-16 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 3e-15 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 1e-14 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 4e-14 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 1e-13 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-12 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 1e-11 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 2e-11 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 3e-11 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 7e-11 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 3e-10 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 6e-10 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 9e-10 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-09 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 2e-09 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 3e-09 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 3e-09 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 4e-09 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 1e-08 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-08 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 3e-08 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 7e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 7e-08 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 1e-07 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-07 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-07 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 4e-07 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 4e-07 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 5e-07 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 6e-07 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 9e-07 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 1e-06 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 2e-06 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 3e-06 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 3e-06 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 7e-06 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 8e-06 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 8e-06 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 9e-06 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 9e-06 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 1e-05 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 2e-05 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 2e-05 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 3e-05 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 3e-05 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 4e-05 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 4e-05 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 5e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 9e-05 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 1e-04 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 1e-04 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 2e-04 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-04 | |
| cd04163 | 168 | cd04163, Era, E | 2e-04 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-04 | |
| PRK11058 | 426 | PRK11058, PRK11058, GTPase HflX; Provisional | 2e-04 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 3e-04 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 3e-04 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 4e-04 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 5e-04 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 5e-04 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 5e-04 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 5e-04 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 5e-04 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 6e-04 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 7e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 8e-04 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 9e-04 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 0.001 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 0.001 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.001 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 0.001 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 0.002 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 0.004 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 0.004 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 0.004 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = e-107
Identities = 118/159 (74%), Positives = 138/159 (86%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
E++L+GLQN+GKT+LVNV+A+G +SED IPTVGFNMRKVTKGNVTIK+WDLGGQPRFRSM
Sbjct: 1 EITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSM 60
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
WERYCR V+AIVYVVDAAD + L ++++ELHDLL KPSL GIPLLVLGNK D PGALS
Sbjct: 61 WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
L ++M LKSITDREV C+ IS K TNID V+DWL+KH
Sbjct: 121 ELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 3e-59
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
++GL AGKT+++ + G IPT+GFN+ V NV +WD+GGQ + R +W+
Sbjct: 4 MLGLDGAGKTTILYKLK-LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKH 62
Query: 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT 143
Y +++VVD++D + + +++ELH LLN+ L G PLL+L NK D PGAL++ L
Sbjct: 63 YYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELI 122
Query: 144 DEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ +GL+SI R S +D +DWL++
Sbjct: 123 ELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-50
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Query: 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVT 65
FL+ L LF + +EM + ++GL NAGKT+++ + G IPT+GFN+ VT NV
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVT-TIPTIGFNVETVTYKNVK 59
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+WD+GGQ R +W Y A+++VVD+AD D + ++ ELH LLN+ L+ PLL
Sbjct: 60 FTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLL 119
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+L NK D PGA+S+ + + +GL + DR S +D +DWL
Sbjct: 120 ILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-43
Identities = 61/154 (39%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 3 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK 61
+++ F N L SL +K+E ++ +GL NAGKT+L++++ ++ +PT+ ++T
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTI 60
Query: 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG 121
GNV +DLGG + R +W+ Y V IV++VDAADP+ S+ EL LLN L+
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN 120
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMGLKSITDRE 155
+P+L+LGNKIDKPGA+S++ L + +GL T +
Sbjct: 121 VPILILGNKIDKPGAVSEEELREALGLYGTTTGK 154
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-39
Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 24 LIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
++GL AGKT+++ VV T IPT+GFN+ VT N+ ++WDLGGQ
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVTT-------IPTIGFNVETVTYKNLKFQVWDLGGQTSI 56
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y AI+YVVD+ D D L IS+SELH +L + L LLV NK D PGAL
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGAL 116
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
S+ + +++GL + DR F S +D +DWLV
Sbjct: 117 SEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-37
Identities = 53/155 (34%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Query: 25 IGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+GL N+GKT+++N + S++++PTVGFN+ KGN++ +D+ GQ ++R +WE
Sbjct: 5 LGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEH 64
Query: 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS--GIPLLVLGNKIDKPGALSKQA 141
Y + + I++V+D++D + +++ EL LLN P + IP+L NK+D P AL+
Sbjct: 65 YYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVK 124
Query: 142 LTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176
+T + L++I D+ F S +D +DWL
Sbjct: 125 ITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWL 159
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 9e-37
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 24 LIGLQNAGKTSLVN------VVATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++GL NAGKT+ + G + I PTVG N+ + G + WDLGGQ
Sbjct: 4 ILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQEE 63
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
RS+W++Y ++YV+D+ D + + S+S ++N +L G+PLLVL NK D P A
Sbjct: 64 LRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDA 123
Query: 137 LS----KQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
LS K+ D ++ R C +S ++ I+WLV
Sbjct: 124 LSVAEIKEVFDD---CIALIGRRDCLVQPVSALEGEGVEEGIEWLVD 167
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 9e-37
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 8 LNWLRSL--FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDM---IPTVGFNMRKVTKG 62
L+ LR L +QE+ + L+GL NAGKT+++ +A SED+ PT GFN++ V
Sbjct: 2 LSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQGFNIKNVQAD 57
Query: 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + L+G+
Sbjct: 58 GFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGV 117
Query: 123 PLLVLGNKIDKPGALSKQALTDEMGLKSITDR----EVCCFMISCKNSTNIDSVIDWLVK 178
P+LV NK D A + + + + L I DR + C S K + ++W+ K
Sbjct: 118 PVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQAC----SAKTGEGLQEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 3e-35
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L LF +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWD 59
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+GGQ + R +W Y +++VVD+AD D + +R ELH ++N + LLV NK
Sbjct: 60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANK 119
Query: 131 IDKPGALSKQALTDEMGLKSITDR 154
D P A+ + +++GL I DR
Sbjct: 120 QDLPDAMKPHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-34
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 29/197 (14%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGF 54
MGLW + +SLF K+E+ + ++GL AGKT+++ VV T IPT+GF
Sbjct: 1 MGLWLSSA--FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTT-------IPTIGF 51
Query: 55 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL 114
N+ V N+ +WD+GGQ + R +W Y + + +++VVD+ D + + +R EL +L
Sbjct: 52 NVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERML 111
Query: 115 NKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR----EVCCFMISCKNSTNID 170
++ L LLV NK D P A+S +T+++GL S+ R + CC +T
Sbjct: 112 SEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC-------ATTAQ 164
Query: 171 SV---IDWLVKHSKSKS 184
+ +DWL + K
Sbjct: 165 GLYEGLDWLSANIKKSM 181
|
Length = 182 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-34
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 1/160 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL NAGKT+++ G + PT+GFN++ + + +WD+GGQ R
Sbjct: 14 EMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
S W Y + A+++VVD++D L + EL LL + L+G LL+ NK D PGALS
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + + L SI F S N+ IDWLV
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-34
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
LF +EM + ++GL AGKT+++ + G S IPT+GFN+ VT N++
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVETVTYKNISF 59
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+WD+GGQ + R +W Y +++VVD+ D D + +R ELH +LN+ L +LV
Sbjct: 60 TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILV 119
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV---IDWLVKHSKS 182
NK D P A+ +T+++GL SI DR + I +T+ D + + WL + K+
Sbjct: 120 FANKQDLPDAMKAAEITEKLGLHSIRDRN---WYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-33
Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGL +F LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE 57
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R ELH +LN+ L
Sbjct: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV---IDWLV 177
LLV NK D P A++ +TD++GL S+ R + I +T+ + + +DWL
Sbjct: 118 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEGLYEGLDWLS 174
Query: 178 KHSKSKS 184
+ +K+
Sbjct: 175 NNIANKA 181
|
Length = 181 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-31
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 11 LRSLFFKQ-EMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGN 63
L SLFF + E ++ ++GL NAGKT+++ VV T PT+G N+ ++ N
Sbjct: 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-------PTIGSNVEEIVYKN 58
Query: 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP 123
+ +WD+GGQ RS W Y A++ V+D+ D + L +++ EL+ +L L
Sbjct: 59 IRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV 118
Query: 124 LLVLGNKIDKPGALSKQALTDEMGLKSITDRE----VCC 158
LLVL NK D GA++ +++ +GL SI D CC
Sbjct: 119 LLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-31
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++ ++GL AGKTSL++ +++ E ++PT GFN + + ++L ++GG R
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
W+RY +++VVD+AD + L ++R ELH LL P +PL+VL NK D P A S Q
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQ 118
Query: 141 ALTDEMGLKSIT-DREV---CCFMISCKNSTNIDSVIDWLVKH 179
+ E+ L+ I R + + + +++V D L +
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-30
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 19/169 (11%)
Query: 20 MELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
M + ++GL AGKT+++ +V T IPT+GFN+ V N++ +WD+GG
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNISFTVWDVGG 53
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q + R +W Y + +++VVD+ D + + +R EL +LN+ L LLV NK D
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV---IDWLVKH 179
P A+S +TD++GL S+ +R + I +T+ D + +DWL +
Sbjct: 114 PNAMSAAEVTDKLGLHSLRNRN---WYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-29
Identities = 47/133 (35%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDM--IPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSM 80
L+GL +AGK++L+ + ++E + IPTVGFN+ + + ++++ +WD+GGQ + R++
Sbjct: 4 LLGLDSAGKSTLLYKLK---HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
W+ Y +VYVVD++D L S+ EL +L + G+P+++L NK D PGAL+ +
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 141 ALTDEMGLKSITD 153
+T LK
Sbjct: 121 EITRRFKLKKYCS 133
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-28
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 8 LNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG 62
+W + + + ++ +GL NAGKT+L++++ ++ PT ++ G
Sbjct: 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIG 59
Query: 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122
N+ +DLGG + R +W+ Y V+ IVY+VDA D + + S+ EL LL+ L+ +
Sbjct: 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV 119
Query: 123 PLLVLGNKIDKPGALSKQALTDEMGLKSITD-------REVCCFMISCKNSTNIDSVIDW 175
P L+LGNKID P A S+ L +GL + T R V FM S W
Sbjct: 120 PFLILGNKIDAPYAASEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKW 179
Query: 176 LVKH 179
L ++
Sbjct: 180 LSQY 183
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 9e-27
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81
L +GL NAGKT+LV+ + G + + PTVGF K+ + ++DLGG FR +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIW 60
Query: 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141
Y +V+VVD++D D + + L +LL P +SG P+LVL NK DK AL
Sbjct: 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120
Query: 142 LTDEMGLKSITDREVC-CFMISCKNSTNIDSVID 174
+ + + L+ + + C + C + ID
Sbjct: 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-25
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN---VTIKLWDLG 72
Q + + ++GL +AGKT+++ + + +PT GFN K V+ GN VT WD+G
Sbjct: 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
GQ + R +W+ Y R IV+VVD+ D + + +++ELH + G+P+LVL NK D
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120
Query: 133 KPGALS-----KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182
P AL K E+ + + C +I ++ + + ++K K
Sbjct: 121 LPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKM 175
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 8e-22
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 12/161 (7%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84
+GL AGKT+++ + + + IPT+GFN+ V N+ +WD+GG+ + R +W+ Y
Sbjct: 5 LGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63
Query: 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144
A+V+V+D++ D +S + SEL LL + L LL+ NK D GALS + +T+
Sbjct: 64 YLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTE 123
Query: 145 EMGLKSITDREVCC----FMISC--KNSTNIDSVIDWLVKH 179
+ L ++CC ++ C ++ + +DWL +
Sbjct: 124 LLSL-----HKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 9e-22
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKTSL+ +SE+ T+G F + + +KL WD GQ RFRS
Sbjct: 5 LIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D + + NL + + L + + IP++++GNK D
Sbjct: 65 ITSSYYRGAHGAILVYDVTNRESFENL----DKWLNELKEYAPPNIPIILVGNKSDLE-- 118
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
++ ++ E + + + F S K N+D + L +
Sbjct: 119 -DERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-21
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFR 78
++G GK+SL+N + G S+ T ++ KG V + L D G F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 79 SMWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
+ R I+ VVD+ D ++ ++ + L K GIP++++GNKID
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDL 118
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ L L I V F +S K +D + + L++
Sbjct: 119 LEEREVEELLRLEELAKILG--VPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 9e-21
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWD 70
F +E ++ ++G GKT+L+N + + E PT+G T + N+ ++LWD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
GQ +RS+ Y R + I+ V D+ ++ E + L + + +P+L++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 131 IDKPGA 136
ID
Sbjct: 121 IDLFDE 126
|
Length = 219 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-18
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L+G GK+SL+ + E+ IPT+G F + + T+KL WD GQ RFR+
Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63
Query: 80 MWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D D N+ E+ ++ +P++++GNK D
Sbjct: 64 LRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCD---L 116
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ ++ E G +++ FM S K + N++ + L +
Sbjct: 117 EDQRVVSTEEG-EALAKELGLPFMETSAKTNENVEEAFEELAR 158
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-18
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ LIG GK+SL++ G +SE T+G F + + +KL WD GQ RF
Sbjct: 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF 62
Query: 78 RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
RS+ Y R + V D + +NL EL + + + ++++GNK D
Sbjct: 63 RSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS----PNVVIMLVGNKSDLE 118
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
++ ++ E + F S K +TN++ + L +
Sbjct: 119 ---EQRQVSREEAEA-FAEEHGLPFFETSAKTNTNVEEAFEELARE 160
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 8e-16
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSED-MIPTVGFN--MRKVTKGNVTIK--LWDLGG 73
E+++ ++G N GK++L+N + S P N + + T K L D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDL--LNKPSLSGIPLLVLGNKI 131
Q + ++ Y RAV + + V D L + + + SG+P++++GNKI
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVIL-VLDVEEILEKQTKEIIHHAESGVPIILVGNKI 119
Query: 132 DKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
D A K L ++ + I +S + NIDS +
Sbjct: 120 DLRDAKLKTHVAFLFAKLNGEPI-------IPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-15
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+SL+ + ED+ T+G F ++ VT +KL WD GQ RFR+
Sbjct: 5 LIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRT 64
Query: 80 MWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R ++ V D D NL +EL P + +LV GNKIDK
Sbjct: 65 LTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDA--VKMLV-GNKIDKEN- 120
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
+ +T E G K + S K + + LV
Sbjct: 121 ---REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELV 158
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-14
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G ++GKT+L + TG + P V +KG + L D+ G + R
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKK-LTLVDVPGHEKLRDK 63
Query: 81 -WERYCRAVSAIVYVVD-AADPDNLSISRSELHDLLNKPSLS--GIPLLVLGNKID---- 132
E ++ AIV+VVD A N+ L+D+L IP+L+ NK D
Sbjct: 64 LLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFTA 123
Query: 133 KPGALSKQALTDEMG 147
KP K+ L E+
Sbjct: 124 KPAKKIKELLEKEIN 138
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-14
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WD 70
FK L LIG GK+ L+ A Y+E I T+G F +R + T+KL WD
Sbjct: 2 LFK----LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWD 57
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
GQ RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK
Sbjct: 58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNK 116
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
D L+ + + D K D F+ S KN+TN++
Sbjct: 117 CD----LTDKKVVDYTEAKEFADELGIPFLETSAKNATNVE 153
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-13
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQPRFR 78
+IG GKTS++ G +S+ T+G F ++ + V ++LWD+ GQ RF
Sbjct: 5 VIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64
Query: 79 SMWERYCR-AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG---IPLLVLGNKIDKP 134
M Y + AV AI+ V D P DL +K +L IP L+L NK D
Sbjct: 65 GMTRVYYKGAVGAII-VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCDLK 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ ++M + + F S K + NI+ + +LVK+
Sbjct: 124 KERLAKD-PEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN 167
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-12
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 19 EMELSLIGLQNAGKTSLVN------VVATGGYSEDMIP------TVGFNMRKVT-KGNVT 65
E ++ +IG AGKT+ V +V T + + TV + + +
Sbjct: 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG 69
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+ L+ GQ RF+ MWE R + +VD++ P I+ + S + IP++
Sbjct: 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP----ITFHAEEIIDFLTSRNPIPVV 125
Query: 126 VLGNKIDKPGALS----KQALTDE 145
V NK D AL ++AL E
Sbjct: 126 VAINKQDLFDALPPEKIREALKLE 149
|
Length = 187 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-11
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFR- 78
+IG N GKT L G + E T+G + R+ T + ++LWD GQ RFR
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK 66
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLS-----ISRSELHDLLNKPSLSGIPLLVLGNKID 132
SM + Y R V A+V+V D + + I E H L N+ +P +++GNK D
Sbjct: 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE-----VPRILVGNKCD 120
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-11
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG---FNMRKVTKGN-VTIK 67
+S K + L+G GK+SL+N T + + T+G N G+ VT++
Sbjct: 2 KSSLLK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQ 57
Query: 68 LWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADP-DNLSISRSELHDLLNKPSLSGIPL 124
+WD GQ RFRS+ + R + + VD + NLS + E + P
Sbjct: 58 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 117
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
++LGNKID P +Q T+E + + F S K++TN+
Sbjct: 118 VILGNKIDIP---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 159
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-11
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ + ++ I T+G F +R + IKL WD GQ
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFR++ Y R I+ V D D +N+ + + + + +++GNK D
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNKCD 119
Query: 133 KPG--ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+SK +AL E G+K F+ S K + N++ L K K
Sbjct: 120 MEEKRVVSKEEGEALAREYGIK---------FLETSAKANINVEEAFLTLAKDILKK 167
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-11
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
L L+G + GK+S+V +SE+ T+G F + V + T+K WD GQ R+
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RS+ Y R +A + V D ++ ++S + +L + + L GNK D
Sbjct: 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALA-GNKAD 117
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-10
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTI--KLWDLGGQP 75
+++ L+G GKTSL+ G + E+ I T+G N + ++ I +WDLGGQ
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
F +M C+ AI+++ D L+ S E + + + IP+LV G K D
Sbjct: 61 EFINMLPLVCKDAVAILFMFDLTRKSTLN-SIKEWYRQARGFNKTAIPILV-GTKYD 115
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-10
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT LV G + T+G F ++ V IKL WD GQ RFRS
Sbjct: 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS 71
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
+ + Y R+ +A++ D ++ L ++ + I +LV GNKID
Sbjct: 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILV-GNKIDL 124
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-10
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG N GKT +V +G +SE T+G F M+ + +KL WD GQ RFR+
Sbjct: 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ + Y R+ + + D + + + + K S + LL++GNK D +
Sbjct: 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEE-VEKYGASNVVLLLIGNKCDL--EEQR 124
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
+ L +E + + S K S+N++
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEA 157
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-09
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK--GNVTIKL--WDLGGQPRF 77
+ +IG + +GK+SL++ + G + + + G + T T L WD GG+
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREEL 61
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN--KPSLSGIPLLVLGNKI 131
+ + + AI+ V D D ++L+ S L L + IP++++GNK+
Sbjct: 62 KFEHIIFMKWADAILLVYDLTDRESLN-EVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 2e-09
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+SL+ V ED+ PT+G F ++++T G +KL WD GQ RFR+
Sbjct: 19 LIGDSGVGKSSLL-VSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77
Query: 80 MWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D + NLS + +L + + + +LV GNK+D+
Sbjct: 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLV-GNKVDRE-- 133
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWL 176
S++ ++ E G+ ++ C F+ S K N++ + L
Sbjct: 134 -SERDVSREEGM-ALAKEHGCLFLECSAKTRENVEQCFEEL 172
|
Length = 211 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 3e-09
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 46/181 (25%)
Query: 23 SLIGLQNAGKTSLVNV-VATGGYSEDMI-----PTVGFNMRKVT---KGNVTI------- 66
+L+G NAGK++L N +ED + PT R++ V +
Sbjct: 45 ALVGYTNAGKSTLFNALTGADVLAEDQLFATLDPTT----RRIKLPGGREVLLTDTVGFI 100
Query: 67 -KLWDLGGQPR-----FRSMWERYCRAVSA--IVYVVDAADPDNLSISRSELHDLLNKPS 118
L P FRS E A +++VVDA+DPD + ++L +
Sbjct: 101 RDL------PHQLVEAFRSTLEE---VAEADLLLHVVDASDPDREEQ-IETVEEVLKELG 150
Query: 119 LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
IP++++ NKID L DE + + IS K +D + + + +
Sbjct: 151 ADDIPIILVLNKIDL--------LDDEELEERLRAGRPDAVFISAKTGEGLDLLKEAIEE 202
Query: 179 H 179
Sbjct: 203 L 203
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-09
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
L +G Q+ GKTS++ + T+G F + + + T++L WD GQ RF
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERF 62
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
RS+ Y R S V V D + + + + D+ ++ I +LV GNK D
Sbjct: 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLV-GNKTD---LS 118
Query: 138 SKQALTDEMGLKSITDREVCCFM-ISCKNSTNI 169
K+ ++ E G K F+ S K N+
Sbjct: 119 DKRQVSTEEGEKKA-KENNAMFIETSAKAGHNV 150
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-09
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVT--KGNVTIKLWDLGGQPRFRS 79
L+G GKTSLV ++E T F + V + + +WD GQ R+ +
Sbjct: 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64
Query: 80 MWERYCR-AVSAIVYVVDAADPDNLSISRS---ELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ Y R A AI+ V D D D+ + EL + I L+++GNKID
Sbjct: 65 LGPIYYRDADGAIL-VYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLE- 118
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
++ ++ + F S K I+ + L K
Sbjct: 119 --RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-08
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
++G GKTSL+N +S T+G F ++VT + VT+++WD GQ RF+S
Sbjct: 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQS 64
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
+ + R V V D +P ++L R E + P +VLGNKID
Sbjct: 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
+L +IG GK+SL+ A +S I T+G F +R V +KL WD GQ R
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
FR++ Y R ++ V D + ++ + L ++ + + +++GNK D P
Sbjct: 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ--NCDDVCKVLVGNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-08
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNV--TIKLWDLGGQPRFRSM 80
+G + GKT L+N + ++ T+G F M + V +++LWD GQ RF+ +
Sbjct: 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCI 65
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID-KPGALSK 139
Y R AI+ V D D +L +R L D L + S + L ++G K D A
Sbjct: 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA 125
Query: 140 QALTDEMGL 148
D + L
Sbjct: 126 LMEQDAIKL 134
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-08
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ D T+G F R + TIK +WD GQ R+R+
Sbjct: 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRA 67
Query: 80 MWERYCR-AVSAIVYVVDAADPDN-LSISR--SELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R AV A++ V D ++ R EL D + S I ++++GNK D
Sbjct: 68 ITSAYYRGAVGALL-VYDITKKSTFENVERWLKELRDH----ADSNIVIMLVGNKSD 119
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-08
Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 31/173 (17%)
Query: 24 LIGLQNAGKTSLVN---------VVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG- 73
+ G N GK+SL+N V G + D V + L D G
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRD---PVRKEWEL--LPLGPVVLIDTPGL 56
Query: 74 -------QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+ R + RA ++ VVD+ ++ E L G P+L+
Sbjct: 57 DEEGGLGRERVEEARQVADRA-DLVLLVVDS------DLTPVEEEAKLGLLRERGKPVLL 109
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ NKID ++ L E L+ + D V +S ID + + +
Sbjct: 110 VLNKIDLVPESEEEELLRERKLELLPDLPV--IAVSALPGEGIDELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 31 GKTSLVNVVATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYC 85
GKTSL+ A G+ + T+G F R++T NVT+++WD+GGQ M ++Y
Sbjct: 12 GKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYI 71
Query: 86 RAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
A+ V D + +NL S + +N+ S + ++++GNK D
Sbjct: 72 YGAQAVCLVYDITNSQSFENLEDWLSVV-KKVNEESETKPKMVLVGNKTDLE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
+ GL ++GKTSL ++ TG + P+ + + KG L D G + R
Sbjct: 8 IAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKY-MLHKGFSF-TLIDFPGHVKLRQK 65
Query: 81 W---ERYCRAVSAIVYVVD-AADPDNLSISRSELHDLL--NKPSLSGIPLLVLGNKID-- 132
+ ++ IV+VVD A P ++ + L+++L + +GI +L+ NK +
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 133 --KPGALSKQALTDEMGL 148
+P KQAL E+
Sbjct: 126 TARPPKKIKQALEKEINT 143
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F R V G ++KL WD GQ RFRS
Sbjct: 5 IIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRS 64
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDL--LNKPSLSGIPLLVLGNKIDK 133
+ Y R + + V D ++ + + L D L P I ++++GNK D
Sbjct: 65 VTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP---DIVIILVGNKKDL 117
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-07
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGY-SEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L+G GKT L+ G + + I TVG F + VT V +KL WD GQ RFR
Sbjct: 5 LVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFR 64
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
S+ Y R A++ + D + DN+ +E+ + + +++LGNK D G
Sbjct: 65 SVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSD----VVIMLLGNKADMSG 120
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
++ + E G + + V S K N++ + K K +S
Sbjct: 121 ---ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRS 166
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-07
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGN-VTIKLWDLGGQPRFRS 79
L+G GK+ LV GY + T + K +G + + WD GQ RF++
Sbjct: 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64
Query: 80 MWERYCRAVSAIVYVVDA---ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
M Y A + V D NLS EL + +P IP +V+ NKID
Sbjct: 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE--YRPE---IPCIVVANKID 115
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-07
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQP 75
+++ +IG + GKTSL+ + E TVG + + T +G + +++WD GQ
Sbjct: 1 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHD-------LLNKPSLSGIPLLVLG 128
RF S+ Y R+ I+ V D I++ E D +++K + LL++G
Sbjct: 61 RFNSITSAYYRSAKGIILVYD--------ITKKETFDDLPKWMKMIDKYASEDAELLLVG 112
Query: 129 NKIDKPGALSKQALTDEMGLK---SITDREVCCFMISCKNSTNIDSVIDWLV 177
NK+D + + +T + G K IT C S K++ N+D + LV
Sbjct: 113 NKLD---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKLV 159
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-07
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
+L +IG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-- 134
+R++ Y R + + D + ++ + + + + S ++++GNK D
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121
Query: 135 ---GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
A + L D++G + F S K + N+ V + LV
Sbjct: 122 RVVSAERGRQLADQLGFEF--------FEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-07
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 12/166 (7%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLWDLGG 73
E +L L+G GKTSL + + D T G N++ + + +WD GG
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q + + + + + S + V D D +S L + +S P++++G ID+
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVS--PVILVGTHIDE 118
Query: 134 PGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ ++ I D +SCKN I + + K
Sbjct: 119 SCDEDILKKALNKKFPAIINDI----HFVSCKNGKGIAELKKAIAK 160
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 1e-06
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
+G V ++LWD GQ RFRS+ Y R +A + V D + + + + D+LN+
Sbjct: 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 85
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
I LV GNK D G L K +T E G++ + S K NI
Sbjct: 86 VIIALV-GNKTDL-GDLRK--VTYEEGMQKAQEYNTMFHETSAKAGHNI 130
|
Length = 176 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 40/169 (23%)
Query: 23 SLIGLQNAGKTSLVNV-VATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ------- 74
+L+G NAGK++L N Y D + + I+L D
Sbjct: 196 ALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR------RIELGDGRKVLLTDTVG 249
Query: 75 ----------PRFRSMWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSG 121
F+S E + +++VVDA+DP+ L L ++
Sbjct: 250 FIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADE 304
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170
IP++++ NKID L DE L + IS K +D
Sbjct: 305 IPIILVLNKIDL--------LEDEEILAELERGSPNPVFISAKTGEGLD 345
|
Length = 411 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQPRFRSMW 81
L+G N GKTSL++ + +D + TVG F +++ N++I WD G+ +F +
Sbjct: 5 LLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNISI--WDTAGREQFHGLG 61
Query: 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID--KPGALSK 139
YCR +A++ D ++ +L L + + + V+GNK+D + GAL+
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAG 120
Query: 140 QALTDEMGLKSITDREV 156
Q + R+V
Sbjct: 121 QEKDAGDRVSPEDQRQV 137
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKV----TKGNVTIKLWDLGG 73
+++ ++G N GK+S++ G +++D T+G F +++ + +V + LWD G
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q F ++ + Y R A + V D ++ S + + IP++++ KID
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKID- 117
Query: 134 PGALSKQA-LTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176
L QA +T+E ++ F S K+ N+ + ++L
Sbjct: 118 ---LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKV-TKGNVTIKL--WDLGGQPR 76
L +IG GK+SL+ G ++E PTVG F R + + V IKL WD GQ R
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64
Query: 77 FRSMWERYCR 86
FRS+ Y R
Sbjct: 65 FRSITRSYYR 74
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-06
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 53/187 (28%)
Query: 31 GKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQPRFRSMWERYCR 86
GKT L+ V A G + E+ +PTV N + + N + + LWD GQ E Y R
Sbjct: 15 GKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ-------EDYDR 67
Query: 87 ---------AVSAIVYVVDAADPDNLSISRSELHDLLNK--PSLS----GIPLLVLGNKI 131
V I Y VD + + L ++ +K P ++ G P++++G K
Sbjct: 68 LRPLSYPDVDVILICYSVD---------NPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKT 118
Query: 132 DKPGALSKQALTDEM----GLKSIT-------DREVCCFM-ISC--KNSTNIDSVIDWLV 177
D L K + GL+ +T + + I C K N+D V D +
Sbjct: 119 D----LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174
Query: 178 KHSKSKS 184
+ SKS
Sbjct: 175 NVALSKS 181
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-06
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 31 GKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRA 87
GK++L +G + E+ PT+ + + V G T+ + D GQ F +M ++Y R
Sbjct: 11 GKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRN 70
Query: 88 VSA--IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144
+VY + + + R ++ + +K +P++++GNK D +Q T+
Sbjct: 71 GDGFILVYSITSRESFEEIKNIREQILRVKDKED---VPIVLVGNKCDLEN--ERQVSTE 125
Query: 145 EMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
E +++ + C F+ S K + NID + + LV+
Sbjct: 126 E--GEALAEEWGCPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-06
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ--- 74
+L ++G GKTSL+ V G + E+ PTV N +V V + LWD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 75 PRFRSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
R R + Y +A V I + +D PD+L R++ + + + +P++++G K D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDT--PDSLENVRTKWIEEVRR-YCPNVPVILVGLKKD 116
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-06
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGNVTIKLW-DLGGQPRF 77
++L ++G +GK++LV+ TG Y + P G F + G + L D GG P
Sbjct: 1 LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA 60
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
++ V A+++V D + H L + ++S IPL+++G + D A
Sbjct: 61 -----QFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQ-DAISAS 114
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKN-STNIDSV 172
+ + + D + D + C + +C N++ V
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 46 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
D+ V F R +T IKL WD GQ FRS+ Y R + + V D +
Sbjct: 33 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92
Query: 104 SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM-IS 162
+ S L D + S S + ++++GNK D S++ ++ E G ++ FM S
Sbjct: 93 NHLTSWLED-ARQHSNSNMTIMLIGNKCDLE---SRREVSYEEG-EAFAREHGLIFMETS 147
Query: 163 CKNSTNID 170
K ++N++
Sbjct: 148 AKTASNVE 155
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRF 77
L LIG GKT L+ + I T+G F M+ +V V I++WD GQ R+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDL-----LNKPSLSGIPLLVLGNKID 132
+++ ++Y R I V D +S RS H + +++ + G+ +++GNK D
Sbjct: 63 QTITKQYYRRAQGIFLVYD------ISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 116
Query: 133 KPGALSKQALTDEMGLKS 150
+ K+ + DE G K
Sbjct: 117 EE---QKRQVGDEQGNKL 131
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-05
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 31/173 (17%)
Query: 23 SLIGLQNAGKTSLVNVVATGG-YSEDMI-----PTVGFNMRKVT-KGNVTIKLWDLGGQP 75
+L+G NAGK++L N + Y+ D + PT R++ + L D G
Sbjct: 193 ALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT----TRRLDLPDGGEVLLTDTVGFI 248
Query: 76 R---------FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
R FR+ E A +++VVDA+DPD + +L + IP L+
Sbjct: 249 RDLPHELVAAFRATLEEVREA-DLLLHVVDASDPDREE-QIEAVEKVLEELGAEDIPQLL 306
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ NKID L DE ++ + + +S K +D +++ + +
Sbjct: 307 VYNKID---------LLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR+
Sbjct: 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + S L D N + + + L+ GNK D
Sbjct: 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLI-GNKAD 118
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-05
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 24/122 (19%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ---PRF 77
++G GKT L+ T + + +PTV ++ G V + LWD GQ R
Sbjct: 5 VVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRL 64
Query: 78 RSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNK--PSLS----GIPLLVLGNK 130
R + Y + V + + VD S S ++ K P + +P++++G K
Sbjct: 65 RPL--SYPQTDVFLLCFSVD---------SPSSFENVKTKWYPEIKHYCPNVPIILVGTK 113
Query: 131 ID 132
ID
Sbjct: 114 ID 115
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 21/169 (12%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN------------VTIKLWD 70
+G GKT+ + ++ I TVG F ++V + V ++LWD
Sbjct: 10 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWD 69
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL-GN 129
GQ RFRS+ + R + + D + R+ + L + P +VL GN
Sbjct: 70 TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWM-SQLQAHAYCENPDIVLIGN 128
Query: 130 KIDKPGALSKQALTDEMGLKSITDR-EVCCFMISCKNSTNIDSVIDWLV 177
K D L Q E + + D+ + F S N++ ++ L+
Sbjct: 129 KAD----LPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 4e-05
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-----QAL 142
V +++VVDA + I + +L K P++++ NKID + + L
Sbjct: 85 VDLVLFVVDADEK----IGPGD-EFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEEL 139
Query: 143 TDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
++ M I IS N+D ++D + K+
Sbjct: 140 SELMDFAEI-------VPISALKGDNVDELLDVIAKY 169
|
Length = 292 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 8/154 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80
LIG + GK+SL+ + + + E+ +P V + VT V + D +P+ R+
Sbjct: 7 LIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 65
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG-IPLLVLGNKIDKPGALSK 139
R + I V P ++ R L L +P++++GNK D S+
Sbjct: 66 LAAEIRKANVICLVYSVDRPS--TLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ 123
Query: 140 QALTDEMGLKSITDREV-CCFMISCKNSTNIDSV 172
L +EM RE+ C S K N+ V
Sbjct: 124 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEV 157
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 9e-05
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 24 LIGLQNAGKTSLVNVV-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L+GL+ +GK+S+ +++ AT + V F GN+T+ LWD
Sbjct: 4 LMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQS---HVRFL------GNLTLNLWD 54
Query: 71 LGGQPRF-----RSMWERYCRAVSAIVYVVDAADPD 101
GQ F E V ++YV D +
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID------KPGALSKQALTD 144
+V+VVD D S+ L +L+ P++++GNKID KP L KQ +
Sbjct: 37 VVHVVDIFDF-PGSL-IPGLAELIGA-----KPVILVGNKIDLLPKDVKPNRL-KQWVKK 88
Query: 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + + ++V ++S K ++ +I+ + K +K +
Sbjct: 89 RLKIGGLKIKDV--ILVSAKKGWGVEELIEEIKKLAKYR 125
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFR 78
L +G GKT+L+ + TV K V VTI + D G F
Sbjct: 2 LVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSFP 61
Query: 79 SMWERYCRAVS-------AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
+M R +S A+VY VD DP++ + ++L +P++V+GNKI
Sbjct: 62 AM-----RKLSIQNGDAFALVYSVD--DPESFEEVKRLREEILEVKEDKFVPIVVVGNKI 114
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSKS 184
D L+++ + L ++ F+ S K++ N+ V L++ + S
Sbjct: 115 DS---LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPS 165
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 34/167 (20%)
Query: 31 GKTSLVNVVATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQP---RFRSMWERY 84
GKT L+ V T + ED +PTV N +V V + LWD GQ R R + Y
Sbjct: 10 GKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL--SY 67
Query: 85 CRA-VSAIVYVVDAADPDNLSISRSELHDLLNK--PSLS----GIPLLVLGNKIDKPGAL 137
V I + VD S + ++ K P + +P++++G K+D
Sbjct: 68 PDTDVFLICFSVD---------SPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDK 118
Query: 138 SKQALTDEMGLKSITDREV---------CCFM-ISCKNSTNIDSVID 174
S + + +T + ++ S + V +
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFE 165
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
++ ++G GKT+L++V A + E+ +PTV N ++ + + LWD G P +
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNL 103
++ A++ D + P+ L
Sbjct: 67 DNVRPLSYPDSDAVLICFDISRPETL 92
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK---PGALSK--QAL 142
V +++VVDA++ +L S P++++ NKID L + L
Sbjct: 83 VDLVLFVVDASEWIG-----EGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKL 137
Query: 143 TDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ I F IS N+D +++++V++
Sbjct: 138 KELHPFAEI-------FPISALKGENVDELLEYIVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 2e-04
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 47 DMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLS 104
D+ V F R +T N IKL WD GQ FRS+ Y R + + V D + +
Sbjct: 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95
Query: 105 ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164
S L D + + + ++++GNK D ++A++ E G + + + S K
Sbjct: 96 HLASWLEDARQHAN-ANMTIMLIGNKCD---LAHRRAVSTEEGEQFAKEHGLIFMEASAK 151
Query: 165 NSTNID 170
+ N++
Sbjct: 152 TAQNVE 157
|
Length = 210 |
| >gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Query: 22 LSLIGLQNAGKTSLVN-VVATGGYSED-MIPTVGFNMRKVTKGNV-TIKLWDLGGQPR-- 76
+SL+G NAGK++L N + Y+ D + T+ +R++ +V L D G R
Sbjct: 200 VSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259
Query: 77 -------FRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLV 126
F++ + R + +++VVDAAD +N+ ++ +L + IP L+
Sbjct: 260 PHDLVAAFKATLQE-TRQATLLLHVVDAADVRVQENI----EAVNTVLEEIDAHEIPTLL 314
Query: 127 LGNKID 132
+ NKID
Sbjct: 315 VMNKID 320
|
Length = 426 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD-NLSISR 107
+ T G K + +L+D+GGQ R W V+AI++VV ++ D L
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 108 SE--LHD-------LLNKPSLSGIPLLVLGNKID 132
S L + + N P P+++ NK D
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKD 246
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ 74
+E ++ ++G GK+++ + + + PT+ + + + + D GQ
Sbjct: 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS-GIPLLVLGNKIDK 133
F +M ++Y R + D + SE +L+ + L+ IPL+++GNK+D
Sbjct: 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQ-EASEFKELITRVRLTEDIPLVLVGNKVDL 119
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ +T E G + F S ID LV+ + K
Sbjct: 120 E---QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 4e-04
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS 150
++ VVDA++ + DL + P++V+ NK D L+D G+
Sbjct: 86 VLLVVDASEGL-------DEEDLEILELPAKKPVIVVLNKSDL--------LSDAEGISE 130
Query: 151 ITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + IS K ID + + L++
Sbjct: 131 LNGKP--IIAISAKTGEGIDELKEALLE 156
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 82 ERYCRAVSAIVYVVDAADPDN----LSISRSEL----HDLLNKPSLSGIPLLVLGNKIDK 133
ER R +++V+D + D+ R+EL L KP + +VL NKID
Sbjct: 77 ER-TRV---LLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI-----VVL-NKIDL 126
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174
A + E+ LK + ++V F IS +D ++
Sbjct: 127 LDAEERFEKLKEL-LKELKGKKV--FPISALTGEGLDELLK 164
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 31/130 (23%)
Query: 20 MELSLIGLQNAGKTSLVN------VVATGGYSEDMIPTVGFNMRKVT------KGNVTIK 67
L+++G +AGK++L+N V+ TG + PT +T V +
Sbjct: 1 FLLAVVGEFSAGKSTLLNALLGEEVLPTG-----VTPTTA----VITVLRYGLLKGVVLV 51
Query: 68 LWD---LGGQPRFRSMW-ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP 123
D L + E + A+++V+ A P ++ SE L SG
Sbjct: 52 --DTPGLNSTIEHHTEITESFLPRADAVIFVLSADQP----LTESEREFLKEILKWSGKK 105
Query: 124 LLVLGNKIDK 133
+ + NKID
Sbjct: 106 IFFVLNKIDL 115
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
E +L L+G GKT+ V TG + + IPT+G + G + +WD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 75 PRF 77
+F
Sbjct: 69 EKF 71
|
Length = 215 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRF 77
L L+G GKT+ V TG + + + T+G + + +G + +WD GQ +F
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSEL----HDLLNKPSLSGIPLLVLGNKIDK 133
+ + Y + + D ++ + DL+ IP+++ GNK+D
Sbjct: 63 GGLRDGYYIQGQCAIIMFDVTS----RVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 116
Query: 134 PGALSKQ 140
K
Sbjct: 117 KDRKVKP 123
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 5e-04
Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQP 75
E ++ ++G GK++L +G + E PT+ RK V +++ D G
Sbjct: 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+F SM + Y + + V + + ++ +P++++GNK+D
Sbjct: 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL-- 118
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
++ + E +++ + C FM S K+ T ++ +
Sbjct: 119 ESEREVSSAEG--RALAEEWGCPFMETSAKSKTMVNEL 154
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSM 80
+G GK+ ++ G + +PT+G + ++KV+ N +++ +DL G P + +
Sbjct: 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65
Query: 81 WERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSG-IPLLVLGNKIDKP 134
+ + ++ V D D L E+ I ++V NKID
Sbjct: 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 7e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
L+G GKT+L+ V A + E+ +PTV N +V K + + LWD G P +
Sbjct: 6 LVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 29/94 (30%)
Query: 24 LIGLQNAGKTSLVNVV-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L G + +GK+S+ VV +T + +G T+ LWD
Sbjct: 4 LXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGN---------XTLNLWD 54
Query: 71 LGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 99
GQ P E + V A++YV+D D
Sbjct: 55 CPGQDVFFEPTKDK--EHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 9e-04
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L L+G GKT+++ V+A Y E +PTV N + + V + LWD G P +
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKID 132
++ A++ D + P+ + R+E+ D PS +L++G K D
Sbjct: 75 DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC--PSTR---ILLIGCKTD 128
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 31 GKTSLV------NVVAT--GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82
GKTSL+ V GG ++ +G + G I D G F SM
Sbjct: 99 GKTSLLDSIRKTKVAQGEAGGITQH----IGAYHVENEDGK-MITFLDTPGHEAFTSMRA 153
Query: 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---LSK 139
R + V+ IV +V AAD D + E ++ + +P++V NKIDKP A K
Sbjct: 154 RGAK-VTDIVVLVVAAD-DGVMPQTIEA---ISHAKAANVPIIVAINKIDKPEANPDRVK 208
Query: 140 QALTDEMGLKSIT-DREVCCFMISCKNSTNIDSVID 174
Q L+ E GL + +S ID ++D
Sbjct: 209 QELS-EYGLVPEDWGGDTIFVPVSALTGDGIDELLD 243
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.001
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKG-NVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + ++ IPTV ++ + G V++ LWD GQ
Sbjct: 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS----GIPLLVLGNK 130
+ + + + A P + R + H P + +P+L++G K
Sbjct: 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWH-----PEVCHHCPNVPILLVGTK 116
Query: 131 IDKPGALSKQALTDEMGLKSITDRE 155
D E G IT ++
Sbjct: 117 KDLRNDADTLKKLKEQGQAPITPQQ 141
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 25/123 (20%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG-------FNMRKVTKGNVTIKLWDLGG--- 73
L+G N GK++L+N + + + V + V I L D G
Sbjct: 4 LVGRPNVGKSTLINAL-----TGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIE 58
Query: 74 ---QPRFRSMWERYCRAVS---AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
+ + + R+ A+ I+ VVDA++ L+ E+ + L K L P++++
Sbjct: 59 GASEGKGVEGFNRFLEAIREADLILLVVDASEG--LTEDDEEILEELEK--LPKKPIILV 114
Query: 128 GNK 130
NK
Sbjct: 115 LNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.001
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 7/165 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQP 75
E +L ++G GK++L G + + PT+ + RK V +++ D G
Sbjct: 1 EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTE 60
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+F +M + Y + V + + + +L +P++++GNK D
Sbjct: 61 QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCD--- 117
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
++ ++ E G C F+ S K+ N+D + LV+
Sbjct: 118 LEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQ 162
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID------KPGALSKQALTD 144
IVYVVD D + I EL + G P+L++GNKID + K+ +
Sbjct: 67 IVYVVDIFDFEGSLIP--ELKRFVG-----GNPVLLVGNKIDLLPKSVNLSKI-KEWMKK 118
Query: 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ ++ ++S K ID ++D + K K
Sbjct: 119 RAKELGLKPVDI--ILVSAKKGNGIDELLDKIKKARNKK 155
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.004
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147
V I++VVDA + +L + + P++++ NKIDK K L +
Sbjct: 86 VDLILFVVDADEGWG-----PGDEFILEQLKKTKTPVILVVNKIDK--VKPKTVLLKLIA 138
Query: 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
IS N+D++++ + ++
Sbjct: 139 FLKKLLPFKEIVPISALKGDNVDTLLEIIKEY 170
|
Length = 298 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.004
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 24/108 (22%)
Query: 82 ERYCRAVSAIVYVVDAADPD------NLSISRSEL----HDLLNKPSLSGIPLLVLGNKI 131
ER R +++++D + D + I R+EL +L KP + +VL NKI
Sbjct: 234 ER-TRV---LLHLIDISPEDGSDPIEDYEIIRNELKKYSPELAEKPRI-----VVL-NKI 283
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
D + L E LK + V F IS +D ++ L +
Sbjct: 284 DLLDEEELEELLKE--LKEALGKPV--FPISALTGEGLDELLYALAEL 327
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.004
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK--PGALSKQ 140
+ +V ++DA + E+ + L + GIP L++ K DK L+K
Sbjct: 77 ENRENLKGVVLLIDARHG--PTPIDLEMLEFLEE---LGIPFLIVLTKADKLKKSELAKV 131
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ L + S K T ID + + +
Sbjct: 132 LKKIKEELNLFNILPP-VILFSSKKGTGIDELRALIAEW 169
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.98 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.98 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.98 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.98 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.98 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.98 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.98 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.98 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.98 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.98 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.98 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.98 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.98 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.97 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.97 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.97 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.97 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.96 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.96 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.96 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.96 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.96 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.96 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.96 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.96 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.96 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.96 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.96 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.95 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.95 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.94 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.94 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.94 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.94 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.94 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.92 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.92 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.92 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.92 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.92 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.92 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.92 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.91 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.91 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.91 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.91 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.91 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.91 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.9 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.9 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.9 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.89 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.89 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.89 | |
| PTZ00099 | 176 | rab6; Provisional | 99.89 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.89 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.89 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.88 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.88 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.88 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.88 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.88 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.87 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.87 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.86 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.86 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.86 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.86 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.85 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.85 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.85 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.85 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.84 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.84 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.84 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.84 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.84 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.83 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.83 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.83 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.83 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.83 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.83 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.82 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.82 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.82 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.81 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.81 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.81 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.8 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.8 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.8 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.8 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.8 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.8 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.79 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.79 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.79 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.79 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.79 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.78 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.78 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.78 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.78 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.77 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.76 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.76 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.76 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.76 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.76 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.76 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.76 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.75 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.75 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.74 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.74 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.74 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.73 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.73 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.72 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.72 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.72 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.72 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.72 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.71 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.7 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.67 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.66 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.65 | |
| PRK13768 | 253 | GTPase; Provisional | 99.64 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.64 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.64 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.64 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.64 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.63 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.61 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.6 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.6 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.59 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.57 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.56 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.56 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.55 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.55 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.54 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.53 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.53 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.53 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.52 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.52 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.51 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.5 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.5 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.5 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.49 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.49 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.47 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.47 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.46 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.44 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.42 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.42 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.42 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.41 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.38 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.37 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.36 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.36 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.36 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.35 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.34 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.34 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.34 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.32 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.3 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.29 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.29 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.28 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.27 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.27 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.25 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.23 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.23 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.21 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.18 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.18 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.17 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.14 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.11 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.1 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.07 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.07 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.06 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.04 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.03 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.03 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.01 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.01 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.01 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 99.0 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.95 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.95 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.94 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.94 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.94 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.94 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.9 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.9 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.9 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.88 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.87 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.87 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.86 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.85 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.84 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.82 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.82 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.82 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.8 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.8 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.8 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.79 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.79 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.79 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.78 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.78 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.76 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.75 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.74 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.72 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.71 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.68 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.67 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.66 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.65 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.65 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.64 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.62 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.54 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.53 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.5 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.49 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.47 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.44 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.38 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.37 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.35 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.32 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.31 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.3 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.28 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.27 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.27 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.26 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.26 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.24 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.24 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.23 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.23 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.2 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.17 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.15 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.13 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.11 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.08 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.07 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.06 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.0 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 98.0 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.99 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.98 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.94 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.92 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.9 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.9 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.86 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.83 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.83 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.79 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.78 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.78 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.77 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.76 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.75 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.75 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.73 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.71 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.7 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.69 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.69 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.66 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.64 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.64 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.63 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.63 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.63 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.62 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.61 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.61 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.61 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.6 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.58 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.57 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.56 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.55 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.54 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.54 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.53 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.53 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.51 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.51 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.49 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.48 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.48 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.47 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.47 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.45 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 97.45 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.45 | |
| PRK06696 | 223 | uridine kinase; Validated | 97.44 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.43 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.42 | |
| PLN02674 | 244 | adenylate kinase | 97.42 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.42 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 97.42 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.39 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.36 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.36 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.35 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.34 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 97.34 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.33 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.32 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.3 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.29 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.29 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.29 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.28 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 97.28 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.28 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.28 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.27 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.27 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.27 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.26 | |
| PRK10646 | 153 | ADP-binding protein; Provisional | 97.26 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.25 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.25 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.25 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.24 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.24 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.23 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 97.23 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 97.23 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.22 |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=201.81 Aligned_cols=179 Identities=31% Similarity=0.600 Sum_probs=146.1
Q ss_pred Cc-hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
|| ++..+.+. .+.+++++|+++|++|||||||++++..+.+.. ..||.+.....+..++..+.+||+||++++..
T Consensus 1 ~~~~~~~~~~~---~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 1 MGLWLSSAFKS---LFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CchHHHHHHHH---hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 77 45555433 355678999999999999999999998777754 56788877777777889999999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..++.......+|+++|+||.|+.+....+++....+........+.++
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 99999999999999999999998988888888776553345689999999999976555566666666544444556778
Q ss_pred EeeecCCCCHHHHHHHHHHhhhcC
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
++||++|.|+++++++|.+.+.++
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=200.89 Aligned_cols=169 Identities=34% Similarity=0.657 Sum_probs=143.7
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++.++|+++|++|||||||++++..+.+. .+.||.+.....+..++..+.+||+||+++++.++..+++++|++++
T Consensus 12 ~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34467899999999999999999999977775 46788887777777888999999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++.....++..++.......+|+++|+||+|+......+++....+........+.++++||++|+|++++|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence 99999999998888888877665444579999999999998776777777777654444455667789999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
++|.+.+.+|
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999988765
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=196.77 Aligned_cols=163 Identities=34% Similarity=0.642 Sum_probs=136.7
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++.++|+++|++|+|||||++++..+.+. ...||.+.....+......+.+||+||++++...+..+++++|++++|
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4467899999999999999999999877665 456788877666777789999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|++++.++.....++..++......++|+++|+||+|+......+++....+........++++++||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999888888887654445789999999999976556666666665544444556799999999999999999
Q ss_pred HHHH
Q 030008 175 WLVK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=195.28 Aligned_cols=164 Identities=34% Similarity=0.649 Sum_probs=138.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|||||||++++..+.+. .+.||.+.....+......+.+||+||++++...+..++++++++++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD 89 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEE
Confidence 56799999999999999999999877764 46688887766677778899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++.......+|+++|+||+|+.+....+++....+........+.++++||++|.|+++++++|
T Consensus 90 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 90 SNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999988888888765444578999999999997655566666666655555556678899999999999999999
Q ss_pred HHhhh
Q 030008 177 VKHSK 181 (184)
Q Consensus 177 ~~~l~ 181 (184)
.+.+.
T Consensus 170 ~~~~~ 174 (175)
T smart00177 170 SNNLK 174 (175)
T ss_pred HHHhc
Confidence 87754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=193.94 Aligned_cols=163 Identities=23% Similarity=0.381 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.+||+++|+.++||||||++++.+.+...+.+|+|..+.. +....+.+++|||+||++++.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 44999999999999999999999999999999999976544 33455889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++..+|+....|+.++.......++-+++|+||.|+.+. .++..+.+...++..+..|+++||+.|.||+++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999988766566889999999999854 4555555555566666789999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
..|...++..
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9999888754
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=184.78 Aligned_cols=182 Identities=77% Similarity=1.232 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
|+++++.+.|+.+.+.+.++.+.++|-.+||||||+|.+..+++.....||.+...+++..+++.+.+||.||+++++.+
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..+.+.+++++||+|+.+++........+.+++......++|+++.+||.|+...-....+..++++......+..++.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999988899999999999999988888999999999888888899999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+|+++..|++.+.++|.+....
T Consensus 162 iScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhh
Confidence 9999999999999999987543
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=189.78 Aligned_cols=158 Identities=33% Similarity=0.657 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.||.+.....+..+...+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999877776 46788887766677788999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++++.....++..++........|+++++||+|+.+....+++.............+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999988888888775544456899999999999765455555555544434445667889999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=192.41 Aligned_cols=162 Identities=24% Similarity=0.411 Sum_probs=135.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|+.|+|||+|+.||....+...+..|++..+.. ++.+..++++|||+||++++..+.+++++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 567999999999999999999999999999999999977654 3345578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCccee-EEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVC-CFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 170 (184)
+|||+++.+||.++..|+.++-.+.. .++|.++|+||+|+.+.... .+..+. .....+.+ ++++||+++.||+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~----fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQE----FADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHH----HHHhcCCcceeecccCCccCHH
Confidence 99999999999999999999876644 56899999999999753221 121222 22233445 9999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
+.|..|...+.++
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887664
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=191.14 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=134.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..++||+++|+.++|||||+-|+..+.+.+...+|++-.+.. +..+ ..+|.+|||+|+++|..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 467999999999999999999999999999889999944433 3333 488999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++.+||.....|+.++-.... +++-+.+|+||+|+.+.-. +..+.....+...+..|+++||++|.||+++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERRE---VEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhccc---ccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999977654 6677888999999986211 1111111222335567999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|..|.+.++..
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999988764
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=187.73 Aligned_cols=161 Identities=30% Similarity=0.576 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|+|||||++++..+.+.. ..+|.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 467999999999999999999999877764 5778887777777788999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++.......+|+++++||+|+......+++.+.+.........++++++||++|.|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888887777777665444579999999999997655566666666544444456689999999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 65
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=187.21 Aligned_cols=175 Identities=32% Similarity=0.547 Sum_probs=143.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
.||..+.+|+.. .++.++|+++|.+|+|||||++++.++.+. ...||.+.....+..++.++.+||+||+..+...+
T Consensus 2 ~~~~~~~~~~~~--~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 78 (184)
T smart00178 2 DWFYDILASLGL--WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLW 78 (184)
T ss_pred hHHHHHHHHhcc--ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 577888764321 267799999999999999999999977664 34667776666777778999999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc-------Cc
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-------DR 154 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~ 154 (184)
..++.+++++++|+|+++++++.....++..++......++|+++|+||+|+......+++.+.+...... ..
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCc
Confidence 99999999999999999998888888788777665444578999999999997666777777777654321 24
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.+.+++|||++|.|+++++++|...
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 5679999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=186.20 Aligned_cols=161 Identities=32% Similarity=0.625 Sum_probs=133.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
...++|+++|++|||||||++++.+..+ ....+|.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 5678999999999999999999997754 356677777666677778899999999999999899999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+.++.++.....++..++......++|+++|+||+|+.+....+++.............++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998888888888877655444679999999999997655555655555443334456789999999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=185.05 Aligned_cols=161 Identities=30% Similarity=0.573 Sum_probs=132.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++|||||||++++.+..+. .+.||.+.....+...+..+.+||+||++++...+..+++.+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 5899999999999999999987665 467888877777778889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++.....++..+.......+.|+++|+||+|+......++..+....... ....+.+++|||++|.|++++|++|.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999988876544456899999999999765555555444432211 1223568899999999999999999987
Q ss_pred hhc
Q 030008 180 SKS 182 (184)
Q Consensus 180 l~~ 182 (184)
+.+
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=189.06 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=126.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.++|+++|.+|+|||||++++..+.+...+.+|.+..+. .+. .....+.+||+||++++..++..+++.++++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998778888874443 233 33467999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+.+.... .+... ...+..++++++|||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~----~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR----NLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH----HHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999877665544333357999999999998643211 11111 11223456899999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (172)
T cd04141 158 GLVREIRR 165 (172)
T ss_pred HHHHHHHH
Confidence 99987654
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=182.25 Aligned_cols=158 Identities=33% Similarity=0.679 Sum_probs=127.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-CCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+|+++|++|||||||++++.+.. ....+.||.+.....+..+...+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999865 34567788887666677778899999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+.++.....++..+.... ...++|+++|+||+|+.+.....++.............++++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 988887777777765542 224799999999999976555555555544332233345789999999999999999986
Q ss_pred H
Q 030008 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=190.62 Aligned_cols=159 Identities=22% Similarity=0.343 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+.|+++|+.|+|||||++++..+.+...+.+|++..+ ..+..+ ...+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999888888887443 334444 378899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+.+.... .+....+.. ...++.+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998887765433 3357999999999998642221 111111110 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
+|.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=180.62 Aligned_cols=157 Identities=40% Similarity=0.746 Sum_probs=127.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....+...+..+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877665 356777776666777788999999999999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.++.....++..++......++|+++|+||+|+.......++...+..........+++++||++|.|++++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777766666666655433457999999999999755445555555544333344568999999999999999999865
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=184.05 Aligned_cols=171 Identities=36% Similarity=0.754 Sum_probs=150.0
Q ss_pred HHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 9 NWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 9 ~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
..+++... +++++|+++|..||||||+++++..+... ...||.+.....+...+..+.+||.+|+..++..|..++++
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 34455554 78999999999999999999999876544 47889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc-CcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-DREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 166 (184)
+++++||+|+++.+.+......+..++......++|+++++||.|+.+....+++...+...... ...+.++.|||.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999899999999998887666789999999999998877888888777765554 56788999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
+|+++.+++|.+.+
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=188.94 Aligned_cols=159 Identities=18% Similarity=0.315 Sum_probs=127.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|+.|+|||||++++..+.+...+.+|.+..+ ..+..+ .+.+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998888766666666443 233333 478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+.. ..++ .+.+ ....++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~-~~~~----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQ-AQAY----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHH-HHHH----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 579999999999986421 2222 1111 12234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++|+.|.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=182.81 Aligned_cols=175 Identities=34% Similarity=0.615 Sum_probs=140.4
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
|+.++++.+... .+..+|+++|++|||||||++++.++.+. .+.+|.+.....+..++..+.+||+||++.+...+.
T Consensus 5 ~~~~~~~~~~~~--~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 5 WFYNVLSSLGLY--NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred HHHHHHHHhhcc--cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 445555544322 56899999999999999999999987764 566777777777777888999999999999988889
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-----------
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----------- 151 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----------- 151 (184)
.+++.++++++|+|+.+.+++.....++..++......+.|+++++||+|+......++.....+....
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 999999999999999998888888888888876555567999999999999765566666655543221
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+++++|||++|+|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 12346799999999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=188.03 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+..+||+++|++|+|||||++++..+.+...+.||.+..+. .+ ......+.+|||+|++++..+...+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999998888888875443 23 3344789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---------HHHHhHhCcCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---------QALTDEMGLKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S 162 (184)
|||++++++|..+ ..|+..+.... +..|+++|+||+|+.+.... ..+........++..+ ++|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67776665432 46899999999998532100 0011111122223344 3799999
Q ss_pred ecCCCC-HHHHHHHHHHhhhc
Q 030008 163 CKNSTN-IDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~-v~~l~~~i~~~l~~ 182 (184)
|++|.| |+++|+.+...+.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999886544
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=185.80 Aligned_cols=161 Identities=21% Similarity=0.375 Sum_probs=128.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe------------CcEEEEEEecCCchhhHHhHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~G~~~~~~~~~~ 83 (184)
+.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ....+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999988888888754432 222 2478999999999999999999
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++. ..+. ...+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 999999999999999999999999888877655444578999999999986432 22221 1111 1123479999
Q ss_pred eecCCCCHHHHHHHHHHhhhcC
Q 030008 162 SCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
||++|.|++++++.|.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=184.22 Aligned_cols=158 Identities=20% Similarity=0.314 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|+|||||+++++.+.+...+.+|.+.... .+..+ ...+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988887777777764322 33333 466789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.......+.|+++|+||+|+.+... .++. ..+ .....++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999988888887654456799999999999964322 1111 111 11123579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
++|.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=177.93 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=141.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE----EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|..|+|||||+.+|..+.+.+....|++..+. .++...+++.+|||+|+++++.+.+++++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4589999999999999999999999999888888995543 344556889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++.+++|.++..|+.++-.+....++-.++|+||+|..+ ...+.++.+..+++.+.+-++++||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999998888888888999999999763 34445555666666777789999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.++..+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999988764
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-32 Score=183.54 Aligned_cols=163 Identities=23% Similarity=0.396 Sum_probs=138.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|+++||||+++.+|..+.+...+..|+++.+.. +. .....+++|||+||++++..+..|++++++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 567999999999999999999999999999999999976554 33 34478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++..+|+++..|+..+-.+. ...+|.++|+||+|+.+ ...+..+.++..+...+++++++||++|.||++.
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 9999999999999999888775554 35899999999999975 3334444444555556778999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|-.|.+.+.++
T Consensus 166 F~~La~~i~~k 176 (207)
T KOG0078|consen 166 FLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHhh
Confidence 99999887643
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=183.32 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||++++.++.+...+.+|.+.. ...+..+ ...+.+|||||++++...+..++++++++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999888877777776632 2233333 366789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++.....|+..+.......+.|+++|+||+|+.+.... .+....+. ...+.+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999888887766544467999999999998643221 11111111 11225799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=179.84 Aligned_cols=156 Identities=32% Similarity=0.596 Sum_probs=130.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
.|+++|++|+|||||++++.++.+...+.||.+.....+...+..+.+||+||+++++..+..+++++|++++|+|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37999999999999999999888877788888877666777889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC-cccCcceeEEEeeecC------CCCHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK-SITDREVCCFMISCKN------STNIDSVI 173 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~------~~~v~~l~ 173 (184)
.++.....++..+.... .++|+++|+||+|+.......++....... ......++++++||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 88888888888776443 579999999999997665555554444332 2244567889999988 99999999
Q ss_pred HHHHH
Q 030008 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=177.45 Aligned_cols=157 Identities=37% Similarity=0.725 Sum_probs=134.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++|||||||+++++++.. ....+|.+.....+......+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 689999999999999999998774 4567788877777778889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++.....++..+.........|+++|+||+|+......+++.+...........++++++||++|.|++++++.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 889988888888777655568999999999999876666677766655444455678999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=183.02 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ....+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999888777777765443 2333 346789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+... ...+.|+++|+||+|+..... .++.... .+...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999888876543 235689999999999864322 2222211 1223457999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999887754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=183.75 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||+.++..+.+...+.+|++..+. .+. ...+++.+|||+|++++..+...++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999998888899875443 222 344789999999999999999999999999999999
Q ss_pred CCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------HHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 97 AADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-------KQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
++++++|..+ ..|+..+.... .+.|+++|+||+|+.+... ...+..+......+..+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 56777765433 4699999999999954311 000111111111222333 59999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
||+++|+.+.+.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=181.55 Aligned_cols=164 Identities=28% Similarity=0.544 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE-----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.++|+++|++|||||||++++..+.+... .||.+....... .....+.+|||||++++...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998777644 566664443332 24578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++++++.....++..+.......++|+++|+||+|+......++.......... ....++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999998888887777777665544457999999999998754444444443332211 22245689999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=187.36 Aligned_cols=161 Identities=19% Similarity=0.288 Sum_probs=128.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++||+++|++|+|||||++++..+.+...+.+|.+..+. . +......+.+|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 35799999999999999999999998887777788775443 2 33344678899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999888887765445678999999999985432 22111111 112235799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-31 Score=184.29 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=125.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|+.|+|||||++++..+.+...+.||.+..+.. +....+.+.+|||+|++++..++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999988888888754432 333447899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHh--------HhCcCcccCcc-eeEEEeee
Q 030008 95 VDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTD--------EMGLKSITDRE-VCCFMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa 163 (184)
||++++++|..+.. |...+.... .+.|+++|+||.|+.+.... +.+.. ..........+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999974 555554322 47999999999999643221 11111 00011112223 57999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.||+++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987643
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=177.86 Aligned_cols=157 Identities=32% Similarity=0.556 Sum_probs=132.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|+++|++|||||||++++.++ +...+.||.+.....+..++..+.+||+||++.++..+..++++++++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999866 666778888887777888889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cCcceeEEEeeecCC------CCHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TDREVCCFMISCKNS------TNIDS 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~ 171 (184)
+++.....++..+.......++|+++|+||+|+.......++......... ....+++++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 899999888888876654467999999999999876666666666554332 123567888999998 89999
Q ss_pred HHHHHHH
Q 030008 172 VIDWLVK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.+++|..
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999875
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=179.34 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||++++.++.+...+.+|.+..+. .+..+ ...+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988887777777764332 23333 356889999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+.+.+++..+..|+..+.......+.|+++|+||+|+.+.... .+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 99999899988888887766554567999999999998653221 2211111 12244799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-31 Score=179.61 Aligned_cols=156 Identities=22% Similarity=0.405 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++..+.+...+.+|.+....... .....+.+|||||++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888876554432 23478999999999998888888999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++..+..|+..+..... ++|+++|+||+|+.......+..+ ......++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888765542 799999999999964332222111 11234567999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-31 Score=181.76 Aligned_cols=158 Identities=22% Similarity=0.362 Sum_probs=125.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++++......+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999998888898875543 2332 34679999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++..+..|+..+.........|+++|+||+|+.+.... ++..... ....+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999988888765543345789999999998643221 1111111 11223468999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=183.40 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.||.+..+. .+..++ +.+.+||++|++++...+..+++++|++++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998888888875443 333333 778999999999999888889999999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH---------hCcCcccCc-ceeEEEeeecC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE---------MGLKSITDR-EVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+.... .++|+++|+||+|+.+.....+.... ......+.. .+++++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 555553322 46899999999998643221110000 000011112 35799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030008 166 STNIDSVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l 180 (184)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988753
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=181.02 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|...... .+. .....+.+|||||++++...+..+++.++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988887766666663322 222 334678899999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.+++++..+..|+..+.........|+++|+||+|+.+.. ..+...... .....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777655444578999999999986432 112111111 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=181.67 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=123.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.||.+..+. .+ ......+.+|||+|++.+......++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 378999999999999999999999998888888875443 22 334477999999999999998899999999999999
Q ss_pred eCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-H--------HHHHhHhCcCcccCcce-eEEEeeec
Q 030008 96 DAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-K--------QALTDEMGLKSITDREV-CCFMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (184)
|++++++|..+ ..|+..+.... ...|+++|+||+|+.+... . ..+.........+..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67776665433 4789999999999853110 0 00111111122223343 69999999
Q ss_pred CCCC-HHHHHHHHHHhhh
Q 030008 165 NSTN-IDSVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~-v~~l~~~i~~~l~ 181 (184)
+|+| |+++|..+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988644
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=182.68 Aligned_cols=159 Identities=28% Similarity=0.408 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+.. ....+.+|||||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999888888888887543 23333 357899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCC--CCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 95 VDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPG--ALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+++++++..+..|+..+... .....+|+++|+||+|+.+ ....++..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998877665432 1235689999999999963 22333322222111 1146999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|+.|.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=180.66 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=124.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|++|+|||||++++++..+.....+|.+..+. .... ....+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3589999999999999999999988776666666663322 2223 336788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++++++..+..|+..+.......+.|+++|+||+|+...... .+....+ ....+++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999888888766544567899999999998643221 1111111 11234579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=180.91 Aligned_cols=157 Identities=18% Similarity=0.337 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+. .+. .....+.+|||||++.+...+..++++++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888875543 333 34578999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC----CCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL----SGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+++++++..+..|+..+...... ...|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999988888877655432 568999999999986321 222221111 112357999999999999
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++++.|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=177.18 Aligned_cols=158 Identities=37% Similarity=0.687 Sum_probs=128.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC------CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+|+++|++|+|||||++++.+... ...+.+|.+.....+..++..+.+||+||++.+...+..++..++++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999985322 33456777777777788889999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++.....++..+.......++|+++|+||+|+.......+....+.... .....++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877655556799999999999876555555544444322 1224568999999999999999
Q ss_pred HHHHHH
Q 030008 173 IDWLVK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=179.57 Aligned_cols=158 Identities=22% Similarity=0.376 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++++...+..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999887777788774432 2322 3478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988888765432 34689999999999964322 12111111 1223479999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999887653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=179.36 Aligned_cols=159 Identities=27% Similarity=0.459 Sum_probs=132.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.-+||.++|++|+|||||++++.++++...+..|++.... . ++...+.+++|||+|++++.++-..+++.+|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45689999999999999999999999999999999994332 2 3444578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCC---CCcEEEEeeCCCCCCCCC-------HHHHHhHhCcCcccCcceeEEEee
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLS---GIPLLVLGNKIDKPGALS-------KQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+|||++++++|+.+..|-.+++.+.... .-|+|+++||+|+..... .+++++.. ..+|||++|
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~-------gnipyfEtS 159 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK-------GNIPYFETS 159 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc-------CCceeEEec
Confidence 9999999999999999999998875533 359999999999965321 23333333 345899999
Q ss_pred ecCCCCHHHHHHHHHHhhhc
Q 030008 163 CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~ 182 (184)
|+.+.||++.|+.+...+..
T Consensus 160 AK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ccccccHHHHHHHHHHHHHh
Confidence 99999999999998876543
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=186.76 Aligned_cols=160 Identities=24% Similarity=0.418 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|++..........+.+.+|||||++.+......++++++++++|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999988864 5778876655555667889999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC---------------------CCHH---HHHhHhCc------C
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---------------------LSKQ---ALTDEMGL------K 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---------------------~~~~---~~~~~~~~------~ 149 (184)
+++|..+..|+..+... .....|+++|+||+|+.+. ...+ .+.+.... .
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999998888877653 2356899999999998641 0011 22222110 0
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....+.+|++|||++|.||+++|..+.+.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 01112357999999999999999999987754
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=180.33 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=127.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||++++.+..+...+.+|.+.... .+... ...+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999999988888888875443 33333 3678999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999998888877553 23578999999999997432 222222111 12345799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.+.+.+.++
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999887643
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=180.72 Aligned_cols=158 Identities=16% Similarity=0.294 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|+++|++|+|||||++++..+.+...+.+|.+.. ...+..+ ...+.+|||||++++..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998887777776522 2233333 356889999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+....... .....+. ...+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888877665444679999999999986432211 1111111 12235799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.+.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=180.45 Aligned_cols=160 Identities=24% Similarity=0.425 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|+.|+|||||++++.++.+...+.+|.+..+. .+..+ ...+.+||++|++++...+..++++++++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899886542 34433 478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+++++++..+..|+..+..... ...| ++|+||+|+..... ..... ..........+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999888887765422 3466 67899999853211 11111 1111112223467999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.+.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=188.04 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-E--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++|+++|++|+|||||++++..+.+...+.||++..+.. + ....+.+.+|||+|++.+......++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999988888888754432 2 23457899999999999999999999999999999
Q ss_pred EeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---------HHHHHhHhCcCcccCcce-eEEEeee
Q 030008 95 VDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---------KQALTDEMGLKSITDREV-CCFMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (184)
||++++++|... ..|+..+.... ...|+++|+||+|+.+... ...+............++ +|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 67777665432 4689999999999853210 001111111222233444 5899999
Q ss_pred cCCC-CHHHHHHHHHHhhhc
Q 030008 164 KNST-NIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~-~v~~l~~~i~~~l~~ 182 (184)
++|+ ||+++|+.+...+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999877644
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=185.67 Aligned_cols=158 Identities=20% Similarity=0.360 Sum_probs=129.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|++....... .....+.+|||+|++++...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888899886554432 24478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+..... .++. .+ .....+++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999998888876543 4699999999999864322 2222 11 122346799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|++|.+.+.+
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999987754
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=179.23 Aligned_cols=158 Identities=25% Similarity=0.428 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+... ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777777776433 233333 36789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+..... .++... +. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999998888775432 34689999999999854322 122111 11 123457999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
++.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=172.59 Aligned_cols=157 Identities=74% Similarity=1.216 Sum_probs=132.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
|+++|++|||||||++++.+..+.....+|.+.....+..+...+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 78999999999999999999988888889998887777777889999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 102 NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++.....++..+........+|+++|+||+|+.+.....+..............++++++|+++|.|++++++.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88777777777766544467899999999998765555555555544433444568999999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=184.22 Aligned_cols=158 Identities=17% Similarity=0.267 Sum_probs=123.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+|+++|++|+|||||++++..+.+...+.+|.+..+. .+..+ ...+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999988887777777764332 23333 35688999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++++++..+..|+..+..... ..+.|+++|+||+|+.+... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877654322 25689999999999864222 1111 111 12223579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.+.+.+.++
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=178.43 Aligned_cols=155 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+.... .+... ...+.+||++|++++......+++++|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888885443 34433 367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.... ....|+++|+||.|+.+.... .+....+ .+....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999998888775442 346899999999998643221 1111111 112235799999999999999999
Q ss_pred HHHHh
Q 030008 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=174.03 Aligned_cols=157 Identities=32% Similarity=0.607 Sum_probs=126.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ....+.+||+||++.+...+..++..+|++++|+|+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887753 46777765555543 34789999999999999889999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC-cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK-SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+.++.....++..++......+.|+++|+||+|+......+++....... ......+++++|||++|+|++++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 98888888888887765444579999999999997554555665554322 22234567999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=185.31 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+||+++|++|+|||||++++.++.+.....+|.+.... .+.. ....+.+||+||++++......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998887777788775433 2322 24689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..|+..+.........|+++|+||+|+...... .+....+ .+..+++++++||++|.|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999998888765544456789999999998653221 1111111 1223367999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=165.26 Aligned_cols=165 Identities=32% Similarity=0.618 Sum_probs=148.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+.+++|.++|..||||||++++|.+.. .+...||.++....+..+.+.+++||.+||...++.|.+|+.+.|++|+|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 469999999999999999999998665 4578899999999999999999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++..++.....+..++......+.|++++.||.|+...-..+++.....+... +...++++.||+.+|+++.+-+++
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999888888887777778999999999999877788888877776555 778899999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 173 L~~~l~~ 179 (185)
T KOG0073|consen 173 LCDDLMS 179 (185)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=173.00 Aligned_cols=169 Identities=34% Similarity=0.691 Sum_probs=157.5
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+-+++.+|+++|-.++||||+++++..++.... .||++++...+.+++..|++||.+|+++++..|..|+++.+++||
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 4568999999999999999999999987776544 999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|.++++.+......+..++........|+++.+||.|+.......++.+.+.+.......+.+..|||.+|+|+.+-+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 99999999999999999999888777789999999999999988999999999998888899999999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+++.+.+.++
T Consensus 171 ~wl~~~~~~~ 180 (181)
T KOG0070|consen 171 DWLSNNLKKR 180 (181)
T ss_pred HHHHHHHhcc
Confidence 9999988765
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=178.51 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+.. .......+.+|||||++++..+...+++.++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999998877777777644432 22344778999999999999888889999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++..+..|+..+.... ...+.|+++|+||+|+.+... ..+....+ .....++++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 999999998887776543321 225689999999999964211 11111111 11223569999999999999999
Q ss_pred HHHHHh
Q 030008 174 DWLVKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
+.|...
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999754
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=173.07 Aligned_cols=161 Identities=31% Similarity=0.634 Sum_probs=134.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..+++.++++++|+|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 56899999999999999999999976554 45677777777777778899999999999988888899999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+.+..++.....++..+........+|+++++||+|+.+....+++...++........++++++||++|+|+++++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99988887777777777665444579999999999997666666777766655444555678899999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=183.70 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||+++|.++.+...+.+|.+... ..+.. ....+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888888887553 23333 247899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+++++++..+..|+..+..... ....|+++|+||+|+.+... ..+....+ ....+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence 999999999999888777655432 23578999999999963211 11111111 112235789999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|...+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=173.05 Aligned_cols=158 Identities=23% Similarity=0.359 Sum_probs=123.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.+||+++|++|+|||||++++..+.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888877777777643 33444444 578999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|+..+... ...++|+++|+||+|+.+... .+...... . ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~---~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLA-E---KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-H---HcCCcEEEEEECCCCCCHHH
Confidence 99999999999988888877543 235789999999999864322 11111111 1 11123689999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=175.18 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.++.+.....++.+..... +......+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988877666665543222 2334567899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++..+..|+..+.... ...|+++|+||+|+.... ..+. ..+ ....+++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999988888887775432 468999999999985321 1111 111 1122457999999999999999999
Q ss_pred HHHhhhcCC
Q 030008 176 LVKHSKSKS 184 (184)
Q Consensus 176 i~~~l~~~~ 184 (184)
+.+.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 998877653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=177.36 Aligned_cols=159 Identities=19% Similarity=0.317 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|||||||+.++..+.+...+.+|.+..+. . +......+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 368999999999999999999998888788888764332 2 2233477899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhH--------hCcCcccCcc-eeEEEeeec
Q 030008 96 DAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDE--------MGLKSITDRE-VCCFMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~ 164 (184)
|+++++++..+.. |+..+... ..+.|+++|+||+|+.+... .+..... .........+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 55554433 24799999999999854211 1111110 0000111122 479999999
Q ss_pred CCCCHHHHHHHHHHh
Q 030008 165 NSTNIDSVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=176.54 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=125.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+. .....+.+||+||++++......+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 348999999999999999999998887776667766433 2233 334679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.... .+..|+++|+||.|+.... ..++..... ...+++++++||+++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888775542 3579999999999986422 222222211 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.+.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=174.47 Aligned_cols=160 Identities=19% Similarity=0.302 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+|++++|+.|+|||+|+.+++.+.+.+....|++..+. . ++....++++|||+|++.+++...++++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35689999999999999999999999999999999996543 2 4556688999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++.++|..+..|+.++..+. ..+.-+++++||+|+... +++.++.++..++.++..+.++||++++||++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999987653 578999999999999643 234444444555556667899999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
|......+
T Consensus 160 F~nta~~I 167 (216)
T KOG0098|consen 160 FINTAKEI 167 (216)
T ss_pred HHHHHHHH
Confidence 98876654
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=174.48 Aligned_cols=159 Identities=23% Similarity=0.386 Sum_probs=124.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|||||||++++.++.+.....+|.+.... .+ ......+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777775432 23 334467899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|...+..... ....|+++|+||+|+.... ..++..+... .....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888877655432 2468999999999986432 2222222211 11224799999999999
Q ss_pred HHHHHHHHHHh
Q 030008 169 IDSVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=173.96 Aligned_cols=152 Identities=19% Similarity=0.328 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
++|+++|++|+|||||++++..+.+.....|+.+.....+..++ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999988877665555443334444444 6789999999875 2456789999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++|..+..|+..+.........|+++|+||.|+... ....+..+.+.. ....++|++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999888888876554467899999999997421 111111111111 11236799999999999999999
Q ss_pred HHHHh
Q 030008 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=174.78 Aligned_cols=153 Identities=21% Similarity=0.397 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+||+++|++|+|||||++++.++.+.....+|.+..+.. +. ....++.+||+||++++...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988877777887755432 32 335789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|...+.... .+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999888887764332 4789999999999865322 22221111 11234799999999999999
Q ss_pred HHHHHHHh
Q 030008 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++.|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=179.81 Aligned_cols=159 Identities=22% Similarity=0.391 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.+..+...+.+|.+..+. .+... ...+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999998887777888875433 33333 367899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+.... ++..... ...+++++++||++|.||+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999988888775432 46899999999998654221 2211111 1123579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++|+.|.+.+..
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=175.98 Aligned_cols=159 Identities=26% Similarity=0.450 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhH-HhHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~ii~ 93 (184)
.++|+++|++|+|||||+++++...+.....+|.+.... .+.. ....+.+||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999988887777777764432 3333 34789999999999886 467888899999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC---CCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN---STNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 169 (184)
|+|+++++++..+..|...+........+|+++|+||+|+..... ..+....+. ....++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999998887776655556799999999999864322 122222221 12235799999999 8899
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=180.34 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|+|||||++++.++.++..+.||++..+. .+. .....+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999999998888898875543 233 34578999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHH--------HHhHhCcCcccCcc-eeEEEeeecC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQA--------LTDEMGLKSITDRE-VCCFMISCKN 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 165 (184)
|+++++++..+..+|...... ...+.|+++|+||+|+..... ... +....+....+..+ .+|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999986545443332 235799999999999964311 111 11111112222334 3799999999
Q ss_pred CCC-HHHHHHHHHHhhhc
Q 030008 166 STN-IDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~-v~~l~~~i~~~l~~ 182 (184)
+.| |+++|+........
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 985 99999998876443
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=174.63 Aligned_cols=156 Identities=21% Similarity=0.353 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.++|+++|++|||||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++++......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998888777777776433 3344333 6789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..++|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999988888765543 2468999999999986432 122222211 123457999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.|...+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=178.31 Aligned_cols=158 Identities=26% Similarity=0.445 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|||||||++++.++.+.. .+.+|.+..... +.. ....+.+|||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 456666644322 333 346899999999999998888999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ....|+++|+||+|+.... ..++.. .+. ...+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999888887765542 2468999999999986321 122211 111 112357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=173.45 Aligned_cols=155 Identities=20% Similarity=0.321 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+.... .+. .....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777777664433 233 33367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++..... ...+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999988887766433 236789999999999864322 22222111 1123579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.+.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=179.70 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++.++.+...+.+|.+..+. .+. .....+.+||++|++.+...+..+++.++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 37999999999999999999999888777788764433 222 334789999999999998888888999999999999
Q ss_pred CCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH---------hCcCccc-CcceeEEEeeecC
Q 030008 97 AADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE---------MGLKSIT-DREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~Sa~~ 165 (184)
+++++++..+. .|+..+.... .+.|+++|+||+|+.+.....+.... ....... ...+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999998886 4666655432 47899999999999654322211110 0011111 1235799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++|+.|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987653
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=171.71 Aligned_cols=158 Identities=24% Similarity=0.455 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+.... .+...+ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777777775433 334433 67899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++..+..|+..+..... ..+|+++|+||+|+.... ..+.... .. ...+++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999988887777655432 579999999999986522 2222222 21 1233579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999987653
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=165.03 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=134.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
--+||+++|+.|+|||+|+++|.++-+++....|++..+.. +..+..++++|||+|++++++...++++.++++++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 45899999999999999999999999999999999965543 44566889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|++..++|.-+.+|+.++-.+.. .++--|+|+||+|+.++ .++.++.+......+...+.++||+..+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999998876654 34667899999999743 4444555555555566678999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
..+...+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876654
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=171.74 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++++..+.....++.+..+ ..+..++ ..+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888776666666433 3343333 57899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+..... .+.|+++|+||+|+..... ..+...... +..+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999888887754422 3699999999999953221 111111111 12236799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=176.26 Aligned_cols=158 Identities=22% Similarity=0.355 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887767777774432 3333 3467899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.... ....|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999998888775432 245899999999998643221 11111111 11244799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99888764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=173.84 Aligned_cols=156 Identities=19% Similarity=0.321 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+|||||++++......+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999988777787765432 2332 3467999999999999998888999999999999
Q ss_pred eCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 96 DAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS------KQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|+++++++..+.. |+..+... ..+.|+++|+||+|+.+... .++..+. ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999998864 55554332 24689999999999864321 1111111 111222 68999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=169.45 Aligned_cols=156 Identities=24% Similarity=0.409 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+..+.. +.. ....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888766666777654332 222 3477999999999999888889999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++.....|+..+.......+.|+++|+||+|+.... ..++..... ....++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888777666556789999999999997332 222222211 12345799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=171.48 Aligned_cols=156 Identities=26% Similarity=0.423 Sum_probs=123.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
++||+++|++|||||||++++.++.+.....+|.+..+ ..+. .....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999888776667766332 2333 3346789999999999998888899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++.....|+..+..... ...|+++++||+|+.+.. ..++...... ..+.+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999998888887765543 678999999999986422 2222222111 11257999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=173.52 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|+++|++|||||||++++.++.+...+.+|.+..+ ..+.. ....+.+||+||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47899999999999999999998888777777776433 22333 3367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++.....|...+.......+.|+++|+||.|+..... .++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999888777766544445799999999999864322 111111110 1112579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.+...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=164.13 Aligned_cols=164 Identities=23% Similarity=0.398 Sum_probs=132.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--E-E-eCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--V-T-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~-~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
....+|++++|+..+|||||+.++.+..+.....+|.+..... + + .+..++++|||+|+++++.....++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 3556899999999999999999999999999999999966443 2 1 3458899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|.++.++|..+..|.-.+-. ..+.+.|+|+|+||||+.++-.. ..+-........+..+|++||+.+.||++
T Consensus 98 iLmyDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 999999999999999988877644 46678999999999999653221 11111112223344699999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.+++.+.++
T Consensus 174 ~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 174 VFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=171.36 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||+++++...+.....++....... .......+.+||+||++.+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888876666665533322 22334679999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.++.++.....++..+.......++|+++|+||+|+... ....+..... ...+.+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999888888877655567999999999999752 1222211111 11234799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.+.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (164)
T cd04139 156 DLVREIRQR 164 (164)
T ss_pred HHHHHHHhC
Confidence 999887653
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=170.72 Aligned_cols=155 Identities=17% Similarity=0.303 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEE--EE---eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+||+++|++|||||||++++..+ .+...+.+|.+..... +. .....+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 4666777777654322 22 23478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+..... .....+. ...+++++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888887765442 468999999999986442211 1111111 12235799999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=178.75 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=127.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||+++|.+..+...+.+|.+... ..+..+ ...+.+||+||++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 558999999999999999999998888777778877543 334333 3689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+..... ..+....+. ....++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998888776543 235799999999999854322 122222221 123468999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|...+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999887754
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=174.28 Aligned_cols=151 Identities=21% Similarity=0.386 Sum_probs=122.4
Q ss_pred EcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 25 ~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|++|||||||+++++.+.+...+.+|++...... . .....+.+|||+|++++..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888878888988655432 2 3457899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.++..+..|...+.... .++|+++|+||+|+.......+... ......+++++|||++|.||+++|+.|...+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988888776543 4799999999999854322111111 1223456899999999999999999999877
Q ss_pred hc
Q 030008 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=178.17 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce-eEEEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF-NMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~-~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++|+++|++|+|||||+++++++.+...+.+|++. ....+.. ..+.+.+|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998888777788762 2233333 34778999999999998888888899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCC--------CCCCCcEEEEeeCCCCCC--CCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 97 AADPDNLSISRSELHDLLNKP--------SLSGIPLLVLGNKIDKPG--ALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|+.+..|+..+.... ...++|+++|+||+|+.. ....+++.+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999988877775431 224689999999999964 2233343333321 12457999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++|+.|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=168.19 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=122.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
++.++|+++|++|+|||||+++++++.+. ..+.+|.+..+ ..+..++ ..+.+||++|++.+......+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46789999999999999999999998887 77788877443 2343333 6789999999999988888889999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-----SKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|+++++++..+..|+..+.. ..++|+++|+||+|+.+.. ..+++.+.+.. ..++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 999999999888888777765422 1368999999999985432 12233222211 13689999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++|+.|.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=168.57 Aligned_cols=160 Identities=26% Similarity=0.438 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+..+ ..+... ...+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888776667766433 223333 356789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+.+++++.....|...+..... ..++|+++|+||+|+..+ ...++....... ....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999888887776665544322 337899999999999732 223332222211 112479999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-29 Score=169.56 Aligned_cols=162 Identities=23% Similarity=0.285 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+||+++|++|+|||||++++.++.+.....++...... .+......+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999988886554443332222 2333567899999999988887778888999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc-ceeEEEeeecCCCCHHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR-EVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++..+..+|...+.... .+.|+++|+||+|+.+................... ..+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999987654443333222 37999999999999754332111111000000001 1268999999999999999999
Q ss_pred HHhhhc
Q 030008 177 VKHSKS 182 (184)
Q Consensus 177 ~~~l~~ 182 (184)
...+..
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 887643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=172.79 Aligned_cols=155 Identities=28% Similarity=0.515 Sum_probs=125.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|+++||||||++++.++.+...+.+|.+.... .+.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999998888888864433 3333 44779999999999999988999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+..... ...|+++|+||.|+.+. ...++..... ...+.+++++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888765543 56899999999998752 2222221111 12225799999999999999999
Q ss_pred HHHHhhh
Q 030008 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~l~ 181 (184)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=173.56 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=118.3
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
|+++|++|+|||||++++.++.+...+.+|....+. .+. .....+.+|||||++.+......+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999998887777777654332 233 23367999999999999988888999999999999999
Q ss_pred CcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHH--------hHhCcCcccCcc-eeEEEeeecCCC
Q 030008 99 DPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALT--------DEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++++..+.. |+..+.... .++|+++|+||+|+.+.... ..+. ...........+ .++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 555554332 47999999999998642211 1110 000001111222 379999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.+.+.+-+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987644
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=175.26 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhH--------HhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~--------~~~~~~~~~ 87 (184)
++|+++|++|+|||||++++.++.+...+.||.+... ..+..++ ..+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988877777776332 2333333 678899999965431 113345789
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++|||+++++++..+..|+..+.... ...++|+++|+||+|+..... ..+....+ ..+...+++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL---VRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH---HHHhcCCcEEEecCC
Confidence 999999999999999999888887776543 235699999999999954311 11111111 011234679999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+|.|++++|+.+...+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 158 YNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999876543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=173.82 Aligned_cols=160 Identities=20% Similarity=0.287 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|..... ..+..+ ...+.+||+||++.+......+++.++++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999888777777765332 223333 3568899999999998888888999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcc-eeEEEeeecCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDRE-VCCFMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~ 166 (184)
+.+++++..+...+...+... ..+.|+++|+||+|+.+............ ....+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988865444333332 46799999999999864322111111000 01111122 36899999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=174.46 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||+++++++.+.. .+.+|.+..+ ..+..+ ...+.+||+||++++......++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888764 4667776443 234433 35678999999999988888899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++++++..+..|+..+... ..+.|+++|+||+|+.+... ...+.............++++++||++|.|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999998888777776543 24689999999999864321 00100000001111223578999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987644
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=171.23 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=115.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EE--EEeCcEEEEEEecCCchh-hHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~ii~v~d 96 (184)
+|+++|++|+|||||+++++.+.+...+.+|..... .. +......+.+||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998877666666664222 22 333446788999999885 34456778899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC-CHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST-NIDSV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
+++++++..+..|+..+..... ...+|+++|+||+|+.... ..++.... ....+.+++++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999988877766554332 3579999999999985321 11111111 11123479999999994 99999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=160.00 Aligned_cols=162 Identities=21% Similarity=0.308 Sum_probs=131.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..-+|++++|+.|+|||+|+++|..+++.+....|++..+.. ++ .+.+++++|||+|++++++....+++.+.+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 455899999999999999999999999999999999966543 33 34588999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+++.++|..+..|+.+.... ..+++-+++++||.|+...-+ +.-.....+..+...-++++||++|+||++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~---VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPERE---VTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhh---hhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999999887543 336788999999999974322 2222222333344456899999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|-...+.+..
T Consensus 163 Fl~c~~tIl~ 172 (214)
T KOG0086|consen 163 FLKCARTILN 172 (214)
T ss_pred HHHHHHHHHH
Confidence 9877766543
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=153.32 Aligned_cols=172 Identities=34% Similarity=0.637 Sum_probs=158.5
Q ss_pred HHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
+.+.+-.++++|+.+|-.++||||++..++-+ .+....||++++...+.+++..|.+||.+|+.+.+..|.+|+....+
T Consensus 9 ~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~-~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 9 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred HHHHhCcccceEEEEecccCCceehhhHHhcC-CCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 34557789999999999999999999999843 44577899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+|..+.+..+..+..+..++........++++..||.|+.....++++...+.+...+...|.+.++||.+|+|+.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999999999999999999999888899999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
+=+.+|...++.+
T Consensus 168 eglswlsnn~~~k 180 (180)
T KOG0071|consen 168 EGLSWLSNNLKEK 180 (180)
T ss_pred HHHHHHHhhccCC
Confidence 9999999887653
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=170.10 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=133.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..+.+||+++|++++|||-|+.++.++.+....-+|++..... ++.+..+.++|||+||++|+.....+++.+.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 4577999999999999999999999999998888999965544 445668899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||++...+|+.+..|+.++..+. ..++++++|+||+|+.+. ..+..+.....+...+..++++||+++.||+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999987654 468999999999999751 11111111112222334699999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
.|+.+...+.+
T Consensus 167 aF~~~l~~I~~ 177 (222)
T KOG0087|consen 167 AFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=174.12 Aligned_cols=160 Identities=20% Similarity=0.365 Sum_probs=121.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||++++.++.+. ...+|.+... ..+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999987764 4566666433 22333 3467899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+...+...+. .......|+++|+||+|+..... .++... ......++++++||+++.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-----~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-----LAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence 99999999999998765544333 22234689999999999864322 121111 11123457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|+.|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=174.25 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=124.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||++++.+..+.....+|++.... .+.. ....+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988887777777775432 2333 33678899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999888877665432 3578999999999986432 222211111 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.+.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=166.94 Aligned_cols=155 Identities=24% Similarity=0.356 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||+++++++.+.....++.... ...+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999888766555555432 223332 3357999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+..... .++|+++|+||+|+..... .++..+.. ...+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888887777654433 3789999999999874322 22222221 1224568999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.|.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=162.29 Aligned_cols=153 Identities=25% Similarity=0.473 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++.+|+|++|+|||+|+.+|..+.++..+..|++.... . +..+.+++.+||++|+++++.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 56789999999999999999999999999999995543 3 3355689999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++.+||.+...|+.++...+ ...|-++|+||.|..+... ...+... .++.+|++||+..+|++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~--------mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQ--------MGIELFETSAKENENVE 158 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHh--------cCchheehhhhhcccch
Confidence 9999999999999999997665 4789999999999875422 2233333 34469999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
..|..|...+.+
T Consensus 159 ~mF~cit~qvl~ 170 (198)
T KOG0079|consen 159 AMFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=171.04 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc-eeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
||+++|++|+|||||+++++.+.+...+.+|.. .....+...+ ..+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999888776666654 3333344444 6789999999999988888899999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.+++++..+..|+..+.......++|+++|+||+|+..... .....+.. ......+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV----ELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH----HhhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999888887777665556799999999999864211 11111111 111234689999999999999999
Q ss_pred HHHHhhh
Q 030008 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~l~ 181 (184)
.|.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=171.13 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|....+ ..+.. ....+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998888877777764222 22332 34678899999999998888889999999999999
Q ss_pred CCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---------HHHHhHhCcCcccCcc-eeEEEeeecC
Q 030008 97 AADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---------QALTDEMGLKSITDRE-VCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 165 (184)
+++++++.... .|+..+... ..+.|+++|+||+|+.+.... ..+............+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999998875 455555432 246899999999998643210 0000000001111122 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030008 166 STNIDSVIDWLVK 178 (184)
Q Consensus 166 ~~~v~~l~~~i~~ 178 (184)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=174.57 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccc--eeEEEEE--eCcEEEEEEecCCchhhHHhHHHHhc-cCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVG--FNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~--~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~ii~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ .....+. .....+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55556653 2223333 345789999999988 223344556 8999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|||+++++++.....|+..+.......++|+++|+||+|+...... .+....+ ....+++++++||+++.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999988888877765544467999999999998643221 1111111 1122457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.|.+.+.
T Consensus 155 ~~~l~~~~~ 163 (221)
T cd04148 155 LEGIVRQIR 163 (221)
T ss_pred HHHHHHHHH
Confidence 999998875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=161.14 Aligned_cols=152 Identities=26% Similarity=0.457 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--Ee--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--TK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+...... .. ....+.+||+||++.+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877777777655443 22 3478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP--GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++.....|+..+.... ....|+++++||+|+. .....++..+... ....+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999888888888777765543 2569999999999996 2223333332222 134579999999999999999
Q ss_pred HHHH
Q 030008 174 DWLV 177 (184)
Q Consensus 174 ~~i~ 177 (184)
+.|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=164.68 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=121.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++..+.+.....+|.+.. ...+...+ ..+.+||+||++.+......++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999888776667776633 33344443 66889999999999998899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+.+++++..+..|+..+... .....|+++|+||+|+.+... ..+....+. .....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999998888887776655332 234689999999999864322 122222221 11235799999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=172.23 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCChHHHHH-HHHcCC-----CCCCCCCccce-e-EE-----------EEEeCcEEEEEEecCCchhhHH
Q 030008 19 EMELSLIGLQNAGKTSLVN-VVATGG-----YSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~-~l~~~~-----~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
.+||+++|++|+|||||+. ++.++. +...+.||++. . +. .+....+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 565433 34556677742 1 11 23344588999999998753
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----------------HHHH
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS----------------KQAL 142 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++++|++++|||+++++++..+.. |+..+.... ...|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34557899999999999999999999864 666554332 4689999999999864200 0111
Q ss_pred HhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 143 TDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.........+..+++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1122222333445689999999999999999999864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=166.13 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|||||||++++.++.+...+.+|.+... ..+.. ....+.+|||||++.+.......+.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 5899999999999999999999888877777776443 23333 34678999999999988887788899999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhC--------cCccc-CcceeEEEeeecC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMG--------LKSIT-DREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~--------~~~~~-~~~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+... ..+.|+++|+||+|+.+..... ++..... ..... ....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999998888864 44444322 2468999999999986432211 1110000 00001 1123799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030008 166 STNIDSVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l 180 (184)
|.|++++|+.|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=167.73 Aligned_cols=158 Identities=15% Similarity=0.330 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++....+.....+|.... ...+... ...+.+||+||++++......++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888776666666532 3333333 3568999999999999888899999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.+.+++.....++..+.......+.|+++|+||+|+..... ..... .+. ....++++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-ELA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999988888887765556789999999999864221 11111 111 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.+.+.+.+
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=167.80 Aligned_cols=158 Identities=19% Similarity=0.330 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||++++++..+.....++...... . .......+.+||+||++.+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998886666665553222 1 22345679999999999887777778899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH--------HHhHhCcCcccCcc-eeEEEeeecCCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA--------LTDEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++++++......+...+.... ...|+++|+||+|+.+...... +............+ .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888877654444333322 3799999999999875543211 00111111111122 379999999999
Q ss_pred CHHHHHHHHHH
Q 030008 168 NIDSVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|++++++.|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=160.25 Aligned_cols=155 Identities=21% Similarity=0.341 Sum_probs=121.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
||+++|++|||||||++++++..+.....++..... ..+... ...+.+||+||++.+......+++.++++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998877777666666322 223333 47789999999999998899999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.+++++.....++..+.........|+++|+||+|+..... .+....... ....+++++||+++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 99999998888888777654446799999999999875221 122111111 11257999999999999999999
Q ss_pred HHHhh
Q 030008 176 LVKHS 180 (184)
Q Consensus 176 i~~~l 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-28 Score=157.62 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=134.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE---eCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..++++.++|+.-+|||||++.++.++++....||++..... +. ....++++|||+|++++++.+.++++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 578999999999999999999999999999999999954321 22 2337899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSG-IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|.++.++|+-+..|+.+.......+. +-+.+|++|+|+.+. .++..+..+..++.+++.++++||++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999887655444333 456889999999743 3344444455566777789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
+.|..|.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999998887643
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=157.61 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=110.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcE-EEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
+|+++|++|||||||++++.+.... ..+.+|.......+..++. ++.+|||||+.. ....+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999965432 2234455555555555565 899999999631 12222233457999
Q ss_pred EEEEEeCCCc-CcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADP-DNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++ +++..+..+...+..... ...+|+++|+||+|+.+.....+....... .....+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 778777777666544321 246899999999999765443332222211 11234689999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++++++.|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-29 Score=161.20 Aligned_cols=160 Identities=21% Similarity=0.370 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE-------------eCcEEEEEEecCCchhhHHhHHHHhc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-------------KGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~~~~~~ 86 (184)
++.+.+|+.|+||||++.++..+.+.....+|+++..+.-. ....++++|||+|+++++++...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999997665421 12378999999999999999999999
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+-+++++||+++.+||.++..|+..+..+....+..+++++||+|+.+.-. +.+..........++|||++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999988888878899999999999974322 1111111222334558999999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.||++..+.+.+.+.+
T Consensus 167 ~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMK 182 (219)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999998888877644
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=162.05 Aligned_cols=159 Identities=23% Similarity=0.403 Sum_probs=127.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|++|||||||++++..+.+...+.+|.+....... .+...+.+||++|++++...+..++.++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 46789999999999999999999888888888888886655432 34588999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+.....+.... ....++.++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888887775432 46899999999998643222221111 1123457899999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|..|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=156.50 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhh----H-----HhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----R-----SMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----~-----~~~~~~~~~~ 88 (184)
.+|+++|++|+|||||++++.++.... .+.+|..........++..+.+|||||+... . .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 378999999999999999999877643 2344666666666667789999999997321 0 1111122336
Q ss_pred CEEEEEEeCCCcCcH--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 89 SAIVYVVDAADPDNL--SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++..++ .....++..+.... .+.|+++|+||+|+.+.....+ ...+ .....++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE-IEEE----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH-HHHh----hhhccCceEEEEeccc
Confidence 899999999987643 44445555443221 3689999999999975433222 1111 1223467999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.+.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=160.19 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|....+. .+. .....+.+||++|++.+.......+..++++++|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999987777666666553322 222 233668999999998887666667889999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-H------HHhHhCcCcccCcc-eeEEEeeecCCC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-A------LTDEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++.+++..+.. |+..+.... ...|+++|+||+|+.+..... . ..........+..+ .++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999998864 555554322 469999999999985421100 0 00000001111222 369999999999
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
|++++|+.+.+.+
T Consensus 160 ~v~~~f~~l~~~~ 172 (187)
T cd04129 160 GVDDVFEAATRAA 172 (187)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998664
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-28 Score=156.90 Aligned_cols=161 Identities=23% Similarity=0.320 Sum_probs=129.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+|++++|..-+|||||+-+++.+++.....+|+.- ...++ .....++.+|||+|+++|..+-+.|++.++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4689999999999999999999999998887777762 22333 3345789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++.++|+.+..|..++... ....+.++||+||+|+.++ ..+..+..+......++.++++||+++.||.++|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 99999999999999999987543 4456899999999999632 2222222222333445569999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.+...+.+
T Consensus 168 e~Lt~~MiE 176 (218)
T KOG0088|consen 168 ESLTAKMIE 176 (218)
T ss_pred HHHHHHHHH
Confidence 999877654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=168.76 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=120.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEe-CcEEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|+++|.||||||||++++++... ...+++|..+....+.. +...+++||+||... ....+..+++
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 3346899999999999999999997543 34567888888887776 456899999999632 3344556678
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeec
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
.++++++|+|+++.++++....|..++..+.. ...+|+++|+||+|+.+..... +..+.. .....++++++||+
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAk 311 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAV 311 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcC
Confidence 89999999999988778887777766654321 2468999999999987543221 111111 11123579999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+++|++++++.|.+.+.+
T Consensus 312 tg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 312 TGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988765
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=152.90 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC---CCCC--CCCccceeEEEEEeC-cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.|+++|++|+|||||++++.+.. ++.. ...|....+..+... +..+.+|||||++++......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998542 2221 233455544455544 6789999999999988777778889999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+.+... ......+.. .... ...|+++|+||+|+.+.... +++.+.+... .....+++++||++++|+
T Consensus 81 V~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 999987321 111111111 1111 12499999999999753211 2222222111 013457999999999999
Q ss_pred HHHHHHHHH
Q 030008 170 DSVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.+..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=155.50 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe-------CcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK-------GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|+.++|||||+++++++.+...+.+|++.... .+.. ..+.+.+||++|++++..+...+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999988888888884432 2332 34789999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCC------------------CCCCCcEEEEeeCCCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKP------------------SLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~iiv~nK~D~~~ 135 (184)
+++|+|+++++++..+..|+..+.... ....+|+++|+||.|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999988876431 124689999999999864
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=159.88 Aligned_cols=162 Identities=23% Similarity=0.356 Sum_probs=134.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++|+++|.+|+|||+|..++....+...+.||++..+.. ++.+...+.++||+|++.+..+...++...+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999854443 344457788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++..||+.+..+...+.........|+++|+||+|+... ..+..+.+........++++++||+...+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999998888866555566899999999999752 11111222222455667799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=156.38 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcE-EEEEEecCCchh---------hHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR---------FRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~ 84 (184)
+..++|+++|++|||||||++++++.... ..+.+|.......+...+. .+.+|||||... +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 45689999999999999999999987642 2345566655555554443 899999999622 22222 23
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+..+|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56789999999999887776654433333 22233468999999999997543222 11 12234469999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 030008 165 NSTNIDSVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l 180 (184)
++.|++++++.|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=150.61 Aligned_cols=169 Identities=33% Similarity=0.623 Sum_probs=145.5
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCC---C----CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGG---Y----SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
+.+..+.|+++|..++|||||+.+....- + +....+|++.+..++...+..+.+||..|++..+++|..++..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 35678999999999999999998876311 1 2346689999999888889999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc-CcccCcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL-KSITDREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~ 166 (184)
++++++++|+++++.++.....+..+.......++|+++.+||.|+.+..+..++...+.. .....+..++.++||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999999888888888777788999999999999988887777777763 333455678999999999
Q ss_pred CCHHHHHHHHHHhhhcC
Q 030008 167 TNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~~ 183 (184)
+||++-.++++..++++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999988764
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=161.29 Aligned_cols=153 Identities=19% Similarity=0.135 Sum_probs=106.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh--------HHhHHHHhccCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRAVS 89 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||+|+|++.... ..+.+|..........++.++.+|||||.... ......++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987653 34445555444444556678999999996432 112345678999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..........+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999876553 222233222 368999999999996432222122222111 11126899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+++
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998765
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=151.78 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-------CCCCCCCcc------ceeE----EEE-----EeCcEEEEEEecCCchhhH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG-------YSEDMIPTV------GFNM----RKV-----TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~-------~~~~~~~t~------~~~~----~~~-----~~~~~~~~~~D~~G~~~~~ 78 (184)
+|+++|++++|||||++++++.. ....+.++. +... ..+ ......+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 111122211 1111 112 2346789999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (184)
..+..+++.+|++++|+|++++.+......+.. ... .++|+++|+||+|+.+.... +++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766555544332 221 36899999999998643211 222222211 12
Q ss_pred eeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 156 VCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..++++||++|.|++++++.|.+.++
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=170.10 Aligned_cols=160 Identities=23% Similarity=0.197 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCch----------hhHHhH-HH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMW-ER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~-~~ 83 (184)
..++|+++|.+|+|||||+|++++... ...+..|.......+..++..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 358999999999999999999997764 2334445555555666777889999999952 222222 23
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+....................++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999987776653 2333322 46899999999999753322222222222222223457999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++|+.+.+.+++
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=163.72 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=110.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh-H-------HhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-R-------SMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-~-------~~~~~~~ 85 (184)
.+..+|+++|++|+|||||+|+|+++.+. +.+.+|.......+..++.++.+|||||.... . ......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 35579999999999999999999987764 44556666666667777889999999997432 1 1122346
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|+.+. +.....++...+.. .+.|.++|+||+|+.+. ...+..+..... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 789999999998753 43443333333322 24677899999998643 233333332211 1234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+++
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999998765
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-26 Score=151.01 Aligned_cols=142 Identities=25% Similarity=0.323 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhh------HHhHHHHh--ccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|+||+|||||+|++++.... ..+..|+......+...+..+.++|+||.... ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999987753 34667888888888888999999999994222 22333333 6789
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++.+.- ......+.. .++|+++|+||+|+..... .+.+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~r~---l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLERN---LYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHHHH---HHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHHHH---HHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 99999999875322 222333333 3699999999999865332 34444444 34799999999
Q ss_pred CCCHHHHHHHH
Q 030008 166 STNIDSVIDWL 176 (184)
Q Consensus 166 ~~~v~~l~~~i 176 (184)
++|++++.+.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=162.62 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=117.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|+++|.||||||||++++++... ...+++|..+....+...+ ..+.+||+||... ....+..++.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 3446899999999999999999997543 3445677777777777666 8899999999642 2334455667
Q ss_pred cCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADP---DNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.++++++|+|+++. +++..+..+..++.... ....+|+++|+||+|+.+....++..+.+.. ....+++++|
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iS 310 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPIS 310 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEE
Confidence 89999999999876 56666666655554332 1246899999999999754333333333321 1134799999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|++++|++++++.|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=147.64 Aligned_cols=155 Identities=22% Similarity=0.270 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.|+++|++|+|||||++++....+..... +|.......+.. .+..+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877655432 233333333444 3678999999999999888888889999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh---HhCcCc--ccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD---EMGLKS--ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|++++...... ..+..+. . .++|+++|+||+|+.... .+.+.. .+.... ......+++++||++|.|++
T Consensus 82 d~~~~~~~~~~-~~~~~~~-~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAK-A---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHHHH-H---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99876422221 1122221 1 468999999999986432 122111 111111 11234679999999999999
Q ss_pred HHHHHHHHhhh
Q 030008 171 SVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~l~ 181 (184)
++++.|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=152.09 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=113.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC------------------CccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++++++........ .|.......+......+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999765543321 222333344556678899999999999988888
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcc-------
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSI------- 151 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+.++..... ...+..... ...|+++|+||+|+...... +.+.+.......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654322 222222221 46999999999999763332 222223322111
Q ss_pred --cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 --TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.....+++++||++|.|++++++.|.+.++.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2245689999999999999999999998763
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=145.77 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|||||||++++..........++.+..... +..++ ..+.+||+||+..+...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999888665555555544333 55556 7899999999999988888888899999999
Q ss_pred EeCCCc-CcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADP-DNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|.... .++.... .+...+..... ...|+++|+||+|+............... ....+++++||.++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999766 5555544 44444443332 27899999999999754433333333322 22336999999999999999
Q ss_pred HHHHH
Q 030008 173 IDWLV 177 (184)
Q Consensus 173 ~~~i~ 177 (184)
++.|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=155.41 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=117.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 86 (184)
+.--|+++|.||+|||||+|++++++. ++.+++|.......+..++.++.|+||||...-. ......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 445789999999999999999998886 5677788888888888889999999999954432 22334568
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+.++.. ...+++...+.. .+.|+++++||+|..+... ...+.+.+... .....++++||++
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccc
Confidence 8999999999997532 223333333332 4589999999999987655 23333333322 2223699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++.|.+.+..+|++
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999999875
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=161.44 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEe-CcEEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++++.... ..+++|.++....+.. ++..+.+|||||.. .+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999987642 3467788887777776 56789999999972 222222 347
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|++++.+......+. .++......++|+++|+||+|+.+... ...... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEEEccC
Confidence 8899999999999987666554332 222322234689999999999964322 111111 112589999999
Q ss_pred CCCHHHHHHHHHHh
Q 030008 166 STNIDSVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++++.|...
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=142.93 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH--------hHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~ 88 (184)
++|+++|++|+|||||++++++.... ..+..+.......+...+..+.+|||||...... .....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999976532 2333344444555666678899999999654421 233456789
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+......+.. ...+|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776555432222 256999999999999754332 1223345799999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++++++.|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=141.50 Aligned_cols=178 Identities=33% Similarity=0.597 Sum_probs=153.9
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
.+..+++-|.. .+.+.+++++|--|+||||+..++.-++. ....||++++...+.+++.++++||..|+...+..|.
T Consensus 4 g~~s~f~~L~g--~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 4 GFSSLFKALQG--PEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred hHHHHHHHhcC--CccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 34444444422 24889999999999999999988864433 4667899999999999999999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
-++.+.+++|||+|.++.+........+..++.........++++.||.|......+.+....++....+...+.+|.+|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999988887777777777777777788999999999988888899999998888888889999999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|.+|+|+++..+++.+-+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999998875
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=165.80 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------HHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 85 (184)
+..++|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4679999999999999999999997653 334555666666777778889999999997654322 23467
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.....+ .. ..++|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999988766643322 22 2468999999999996432221 12234689999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030008 166 STNIDSVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~ 181 (184)
|.|++++++.|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998775
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-25 Score=154.52 Aligned_cols=160 Identities=25% Similarity=0.298 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC-----------chhhHHhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~ 86 (184)
..++|+++|++|+|||||++++.+..+.....++.......+... .+.+||||| ++.++..+..++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998776544444443333333333 689999999 4566665555543
Q ss_pred ----cCCEEEEEEeCCCcCcHH-H--------HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCc-
Q 030008 87 ----AVSAIVYVVDAADPDNLS-I--------SRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKS- 150 (184)
Q Consensus 87 ----~~~~ii~v~d~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~- 150 (184)
.++++++|+|......+. . ....+...+.. .++|+++|+||+|+.+.. ..+++...++...
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 457888999986532210 0 01111222221 368999999999986443 1233333333210
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
......+++++||++| |++++++.|.+.+.+.
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 0111135899999999 9999999999987664
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=149.98 Aligned_cols=153 Identities=24% Similarity=0.214 Sum_probs=107.5
Q ss_pred EEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCchhh-------HHhHHHHhccCCEEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF-------RSMWERYCRAVSAIVY 93 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ii~ 93 (184)
++|++|+|||||++++.+... ...+.+|.......+... +..+.+|||||.... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 334455666666666666 788999999996321 1123445678999999
Q ss_pred EEeCCCc------CcHHHHHHHHHHHhcCCC------CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 94 VVDAADP------DNLSISRSELHDLLNKPS------LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.++ .++.....+...+..... ...+|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456665555555543322 1468999999999997543333221 111122234569999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=149.87 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC----CCC-----CCCCccceeEEEEEeC--------------cEEEEEEecCCchh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG----YSE-----DMIPTVGFNMRKVTKG--------------NVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~----~~~-----~~~~t~~~~~~~~~~~--------------~~~~~~~D~~G~~~ 76 (184)
++|+++|++|+|||||++++++.. +.. ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999998631 111 1224445444333332 67899999999977
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhHhCcCc--
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ----ALTDEMGLKS-- 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~-- 150 (184)
+..........+|++++|+|+.++........+. +... .+.|+++|+||+|+......+ ++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555555667789999999998764333322111 1111 257999999999987433322 2222111111
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....++++++||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123567999999999999999999988753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=152.36 Aligned_cols=160 Identities=24% Similarity=0.272 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEE--eCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~G~ 74 (184)
++..+|+++|+.++|||||+.+|...... ....-|.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999843321 112345555666666 78899999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC-----cC
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG-----LK 149 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----~~ 149 (184)
..+.......+..+|++++|+|+.++-.. ...+.+..... .++|+++|+||+|+... ...+...+.. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 99998888999999999999999976332 22333333322 46889999999999822 2222222221 11
Q ss_pred cccC-cceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 150 SITD-REVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 150 ~~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.... ...+++++||.+|.|+++|++.|.+.++.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 1122 35789999999999999999999998863
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=163.65 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH-----------hHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-----------MWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~~~ 84 (184)
.++|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||..+... ....+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999997652 23344555555555666777899999999643321 12346
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+.++.+..... .+..... .++|+++|+||+|+. +....+++.............++++++||
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 78899999999999886655432 2222222 368999999999997 22223344444433333334578999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++++.+.+...+
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998876543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=160.99 Aligned_cols=155 Identities=22% Similarity=0.265 Sum_probs=111.8
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM-------- 80 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------- 80 (184)
.....++.++|+++|++|+|||||+|++++... ...+.+|.......+..++..+.+|||||+......
T Consensus 196 ~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 196 KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence 334456789999999999999999999997643 334444555556667778889999999997554322
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+++++|++++|+|++++.++... ++..+.. .++|+++|+||+|+... +.+.+. .....+++.
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEE
Confidence 33567899999999999988776654 4444321 36899999999998643 222111 112346889
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++ .|++++++.+.+.+.+
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHH
Confidence 99998 5899998888887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-26 Score=147.12 Aligned_cols=156 Identities=26% Similarity=0.424 Sum_probs=124.8
Q ss_pred EEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|+.++|||+|+-++..+.+-. ...+|+++.++. +....+++++|||+||+++++....+++.+|+.++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999888777643 456788876654 3455688999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+..||++...|+.++-.+.. ..+.+.+++||+|+.++ ..+....+....+..++|+.++||++|-|++..|-.|..
T Consensus 82 nkasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred cchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 99999999999988765533 45788999999999642 112222222333344558999999999999999999988
Q ss_pred hhhcC
Q 030008 179 HSKSK 183 (184)
Q Consensus 179 ~l~~~ 183 (184)
.+.+.
T Consensus 158 ~l~k~ 162 (192)
T KOG0083|consen 158 ELKKL 162 (192)
T ss_pred HHHHh
Confidence 87654
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=146.66 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCCCC----------------CCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
-+|+++|++++|||||++++++ +.+.... ..|.......+..+...+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999996 3333221 112222334466778899999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc--ccCcce
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS--ITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~--~~~~~~ 156 (184)
..+++++|++++|+|+.+.. ......++..... .++|+++|+||+|+...... +++...+.... ....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2223333333322 36899999999999643221 22222221110 122356
Q ss_pred eEEEeeecCCCCH----------HHHHHHHHHhhh
Q 030008 157 CCFMISCKNSTNI----------DSVIDWLVKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~v----------~~l~~~i~~~l~ 181 (184)
+++++||++|.|+ ++|.+.|.++++
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 8999999999665 455555555543
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=143.55 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCch-----hhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-----RFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~ii~v~ 95 (184)
||+++|++|+|||||++++.++... +.+|.+.. ... .+|||||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 7999999999999999999976542 33343322 222 789999973 233333 3478999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++.++... .+ .... ..|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++++
T Consensus 71 d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHH
Confidence 99998876542 22 2221 249999999999865322 2221111111 1122689999999999999999
Q ss_pred HHH
Q 030008 175 WLV 177 (184)
Q Consensus 175 ~i~ 177 (184)
.+.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=163.93 Aligned_cols=162 Identities=24% Similarity=0.266 Sum_probs=115.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
++--..|+++|.||||||||+|+|++... ...+++|+.+....+...+..+++||+||... .......++.
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34457899999999999999999996543 35577888888888888888999999999532 1223445678
Q ss_pred cCCEEEEEEeCCCc----CcHHHHHHHHHHHhcCC----------CCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcc
Q 030008 87 AVSAIVYVVDAADP----DNLSISRSELHDLLNKP----------SLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSI 151 (184)
Q Consensus 87 ~~~~ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~ 151 (184)
.++++++|+|+++. +.+..+..+..++..+. ....+|+++|+||+|+.+..... .+...+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l----- 310 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL----- 310 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----
Confidence 89999999999753 33444333332332221 22468999999999986432221 111111
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....++++++||+++.|++++++.|.+.+.+
T Consensus 311 ~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 311 EARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1124679999999999999999999988754
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=164.07 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=108.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 85 (184)
....+|+++|.+|+|||||+|++++... ...+..|...........+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457999999999999999999997653 22333344445555666778899999999752 344456678
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +....+.. ..+ ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCC
Confidence 89999999999998765432 222223222 4699999999999864321 11111111 111 247899999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988754
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=136.65 Aligned_cols=176 Identities=28% Similarity=0.511 Sum_probs=152.8
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc-EEEEEEecCCchhhHHhHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~ 82 (184)
++.++.-.++.. .++++|+++|-.++|||||+.++...+. +...||-+++...+.+++ .++++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 455666665554 7899999999999999999999975444 466789999999888766 8999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+.+.|.++||+|.++...|+...+.+-+++...+...+|+.+..||.|+......++......+.......+++-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999888998888888888888778899999999999987777888888888877788889999999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|.+++|+.+-.+++....+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999988888776654
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=143.69 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=103.1
Q ss_pred EEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--ccCCEEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVY 93 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~~~ii~ 93 (184)
++|.+|+|||||++++.+..... .+..|.......+..++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999775433 233455555566777778899999999876542 344455 48999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+++... .++..+.. .++|+++|+||+|+.+........+.+ ....+.+++++||.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 99998865432 22222222 368999999999996543222111111 11123579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
+.+.+.++
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=141.27 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh----------H-HhHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------R-SMWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~-~~~~~~ 84 (184)
.++|+++|++|+|||||++++++.... ..+..+.......+..++..+.+||+||.... . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999976532 22333334444445566778999999996432 1 112235
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..+|++++|+|+.++.+..... .+..... .+.|+++++||+|+... ...+.+.+............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 67899999999999886654432 2222211 35899999999999755 23333333333322222345799999
Q ss_pred ecCCCCHHHHHHHHHHh
Q 030008 163 CKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=141.92 Aligned_cols=151 Identities=28% Similarity=0.451 Sum_probs=111.5
Q ss_pred EEcCCCCChHHHHHHHHcCCC-CCCCCCccceeEEEEEe----CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 24 LIGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..........++.++++++|+|+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444554 33333332 3678999999999888888888889999999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
++.++.....++..........++|+++|+||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988777776663333334445679999999999997654433321 00011123356799999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=141.57 Aligned_cols=146 Identities=21% Similarity=0.183 Sum_probs=101.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH--------hHHHHhccCCEE
Q 030008 23 SLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAI 91 (184)
Q Consensus 23 ~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~~i 91 (184)
+++|.+|+|||||++++++... ...+..|...........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999997642 23334444455556666778899999999876433 344567889999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+.++.+.... .+...+.. ...|+++|+||+|+.+.... ....... ...+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~----~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL----GFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc----CCCCeEEEecccCCCHHH
Confidence 999999876433322 22222222 35999999999999754322 1111111 111589999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=158.26 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.||+|||||++++++... ...+++|..+....+... +..+.+||+||... ....+..++.++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 34899999999999999999997653 345677888877777665 67899999999532 223344556779
Q ss_pred CEEEEEEeCCCc---CcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADP---DNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|+|+++. +++.....+...+..+. ....+|+++|+||+|+.+... .+++.+.+. .+++++||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA 309 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISA 309 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeC
Confidence 999999999764 45555555555544332 124689999999999843211 112222211 46999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++++|++++++.|.+.+.+
T Consensus 310 ~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=147.25 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---C--CCCccceeEEEEEe---------------------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---D--MIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~--~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||+.++....... . ...|....+..+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997442111 0 11111111111111
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
....+.+|||||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267999999999999888888888999999999998742111112222222111 2257999999999975322222
Q ss_pred HHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 142 LTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+....... .....+++++||++|+|++++++.|.+.++.
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1122211111 1124579999999999999999999987754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=146.08 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=121.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE--e--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT--K--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|||||||++++.+..+...+.+|.+....... . ...++.+|||+|+++++..+..+...++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 3489999999999999999999999998888888775444322 1 14679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH-hHh----------Cc-CcccCcceeEEEe
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT-DEM----------GL-KSITDREVCCFMI 161 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~-~~~----------~~-~~~~~~~~~~~~~ 161 (184)
|+|..+..+.......+...+........|+++|+||+|+..+....... ... .. .........++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999966665555444443333332468999999999997654322111 110 00 0000112238999
Q ss_pred eec--CCCCHHHHHHHHHHhhhc
Q 030008 162 SCK--NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~--~~~~v~~l~~~i~~~l~~ 182 (184)
|++ .+.++++++..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999998887753
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=143.75 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=104.0
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEeCcEEEEEEecCCc----------hhhHHhHHH
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQ----------PRFRSMWER 83 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G~----------~~~~~~~~~ 83 (184)
..+..++|+++|++|+|||||+++++++.+.....++.+..... ....+..+.+|||||. +.+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34456899999999999999999999765433333343322111 1111367999999994 333444444
Q ss_pred Hhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 84 YCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 84 ~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++.. .+++++|+|+..+.+... .++...+.. .+.|+++++||+|+.+....+............ ...++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF-GDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-cCCceEE
Confidence 5544 367888999887643322 122222222 368999999999997543333322222211111 1457899
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||+++.|++++++.|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988765
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=155.09 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.||||||||+|++++... +..+++|.......+...+ ..+.++||||... .......++..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 34899999999999999999997553 4457788888888887665 4599999999643 223344567889
Q ss_pred CEEEEEEeCC---CcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 89 SAIVYVVDAA---DPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 89 ~~ii~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++++|+|++ +.+.+.....+...+.... ....+|+++|+||+|+.......+....+... .....+++++||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECC
Confidence 9999999998 4445555555555544321 12358999999999987443322222222111 0111258999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999999998865
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=151.87 Aligned_cols=119 Identities=19% Similarity=0.404 Sum_probs=100.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---------------CcEEEEEEecCCchhhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---------------GNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~~ 79 (184)
...+||+++|+.|+|||||++++.++.+...+.+|++... ..+.. ..+.+.+|||+|++++..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3569999999999999999999999988888888988654 23332 236799999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-----------CCCCcEEEEeeCCCCCC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS-----------LSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nK~D~~~ 135 (184)
++..++++++++|+|+|+++.+++..+..|+..+..... ...+|+++|+||+|+.+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 999999999999999999999999999999888765421 13589999999999864
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=147.12 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=124.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EE-eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+|++++|+..+|||+|+..+..+.++..+.||+--++.. +. ...+.+.+|||+||+.|..++...+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999999999998844322 32 455789999999999998877778899999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhH--------hCcCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDE--------MGLKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 162 (184)
||++.+++++.++. .|+.++...+ ++.|+|+|++|.|+.+.... +.+... .+....+..+ ..|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999975 5555554443 78999999999999843211 111111 0001111111 4699999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++..|++++|+..+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999887754
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=156.15 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-EEEEEEecCCchhh--HHhH------HHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMW------ERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++++.... ..+++|.+.....+...+ ..+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999976643 345677777766666555 38899999997331 2222 2345889
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee-EEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC-CFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|++++|+|++++.++.....+. .++.......+|+++|+||+|+.+.... .... .. .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~-~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVN-TVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHH-HHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hh------cCCCceEEEeCCCCC
Confidence 9999999999987666553221 2222222246899999999999643211 1111 10 1112 5889999999
Q ss_pred CHHHHHHHHHHhhh
Q 030008 168 NIDSVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~l~ 181 (184)
|++++++.|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=165.41 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh----------hHHh-HHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSM-WERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~~~ 84 (184)
..+|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||..+ +... ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998763 23344555555555667777899999999532 2211 2234
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+....+.+..............+++++||+
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 68899999999999887766553 2333322 368999999999997543333333333222222234578999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+|.|++++++.+.+.+.+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988765
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=133.01 Aligned_cols=158 Identities=20% Similarity=0.310 Sum_probs=126.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE----EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..-++-.++|+-|+|||+|+++|...++...-..|++..+. .++.+..++++|||+|+++++....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45689999999999999999999999988887888885443 35566789999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.|+|++.+.+..-+..|+.+... ...++..+++++||+|+...-+ -++.. .+..+.+..+.++||++|.|++
T Consensus 89 mvyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak-----~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAK-----EFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHH-----HHHhhcCeEEEEecccccCcHH
Confidence 99999999888888888887644 4457788999999999964322 12211 1223445579999999999999
Q ss_pred HHHHHHHHhh
Q 030008 171 SVIDWLVKHS 180 (184)
Q Consensus 171 ~l~~~i~~~l 180 (184)
+.|-.-...+
T Consensus 163 dafle~akki 172 (215)
T KOG0097|consen 163 DAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHH
Confidence 9876554443
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=149.58 Aligned_cols=157 Identities=21% Similarity=0.188 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++.... ..+.+|..........++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4457999999999999999999977653 233333333333344455789999999964432 23344678
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-LSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+.++. .....++...+.. .+.|+++|+||+|+... .........+.. .....+++++||++
T Consensus 84 ~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence 899999999998832 2223333333332 36899999999999732 222223333322 12234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
+.|++++++.|.+.+++
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=153.79 Aligned_cols=149 Identities=21% Similarity=0.196 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh---------hHHhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (184)
..|+++|.||+|||||+|+|+++.. .+.+..|.+..+......+..|.++||+|.+. ...+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998775 46677888888888888888999999999542 23445567899
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+++||+|...+-+. ..+.+..++.. .++|+++|+||+|.... .....+.+++-.. .++++||.+|.
T Consensus 84 ADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efyslG~g-----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSLGFG-----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhcCCC-----CceEeehhhcc
Confidence 9999999999876332 22333444432 46999999999998622 2222223322211 48999999999
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
|+.+|.+.+...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999987
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-23 Score=138.72 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCch----hhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~ii~v~d 96 (184)
+|+++|++|+|||||+|++.+... ...+|.+. ..... .+|||||.. +........++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 699999999999999999874431 11122222 11111 269999962 222222344789999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.. .++..+ ....|+++++||+|+.+. ..+.+.+..... ....|++++||++|+|++++++.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHH
Confidence 998865422 333332 135799999999998542 333323222111 112479999999999999999999
Q ss_pred HHhhhc
Q 030008 177 VKHSKS 182 (184)
Q Consensus 177 ~~~l~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 887753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=156.20 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh----------H-HhHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------R-SMWER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~-~~~~~ 83 (184)
..++|+++|++|+|||||+|++++... ...+..|.......+...+..+.++||||.... . .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999996542 223334444444556667788999999995322 1 11234
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|+.++.+..... .+..+.. .++|+++|+||+|+.+.....++...+.........++++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 678899999999999886554432 2222221 36899999999999744333444444433333334568999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999877553
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=156.10 Aligned_cols=150 Identities=23% Similarity=0.246 Sum_probs=107.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc--------hhhHHhHHHHhccCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVS 89 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||+|++++... ...+..|.......+...+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999997653 233445555666677778889999999995 344555667789999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+.++.+... ..+...+.. .++|+++|+||+|..+..... .+.+.. ...+++++||.+|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~--~~~~~l-----g~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVA--AEFYSL-----GFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccH--HHHHhc-----CCCCeEEEeCCcCCCh
Confidence 9999999987643322 222233322 368999999999986432211 111111 1115899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.+.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=153.20 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=121.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH-----------HhHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~~~ 84 (184)
.++|+++|.||+|||||+|+++++.- .+...+|.......+..++.++.++||+|..+-. ......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 49999999999999999999997663 4567778888888888999999999999943321 123455
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..++++++|+|++.+-+.+.. .+..+ ....+.++++|+||+|+.+. ...++....+.........++++++|
T Consensus 258 I~~a~vvllviDa~~~~~~qD~--~ia~~---i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDL--RIAGL---IEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHH--HHHHH---HHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 6889999999999988433332 22222 22357999999999999875 44556666666555556678999999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.+....+
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999999887654
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=155.18 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+... ...+..|.......+...+..+.+|||||... .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999997653 23344455566666777788999999999876 233455677899
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+... .++...+.. .++|+++|+||+|..+. .....+.+... ...++++||.+|.|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 99999999987643322 222222222 26899999999997542 11111211111 11378999999999
Q ss_pred HHHHHHHHHHh
Q 030008 169 IDSVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++++.+...
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=134.73 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+..... ....+..............+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999765422 11222222233344556789999999965432 233445788
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+ ....++...+.. .+.|+++|+||+|+.. .....+....+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 999999999998721 122222222222 2589999999999973 33333333333222 22347899999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=139.00 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccC-CEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~ii~v~ 95 (184)
+|+++|++|||||||+++|.++.+.....++ ........ .....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776554443 22222222 2357799999999999999999999998 9999999
Q ss_pred eCCCc-CcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhC-----------cC------------
Q 030008 96 DAADP-DNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMG-----------LK------------ 149 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----------~~------------ 149 (184)
|+.+. .++.....++..++... ....+|+++|+||+|+......+.+.+.+. ..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 66777776766654322 225799999999999865433211111110 00
Q ss_pred ----------cc--cCcceeEEEeeecCCC-CHHHHHHHHHH
Q 030008 150 ----------SI--TDREVCCFMISCKNST-NIDSVIDWLVK 178 (184)
Q Consensus 150 ----------~~--~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 178 (184)
.+ ......++++|+..+. |++++.++|..
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 0124568889998876 69998888764
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=148.17 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=118.8
Q ss_pred hhcccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------H
Q 030008 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------W 81 (184)
Q Consensus 13 ~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~ 81 (184)
...+++.++++++|.||+|||||+|+|.+.+. ++.+.+|.+.....+..+++++.++||+|....... .
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 34457889999999999999999999997664 567888999999999999999999999996544332 3
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...++++|.+++|+|++.+.+-.... +.. ....++|+++|.||+|+.+....... ....+.+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh--------hccCCCceEEE
Confidence 34578999999999999863222211 111 22356999999999999866443222 11122368999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
|+++|+|++.+.+.|.+.+..
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred EecCccCHHHHHHHHHHHHhh
Confidence 999999999999999887653
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=138.39 Aligned_cols=148 Identities=22% Similarity=0.289 Sum_probs=93.0
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCch----------hhHHhH
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQP----------RFRSMW 81 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~ 81 (184)
......++|+++|++|+|||||+|++++..+.....++.+... ..+..+ ..+.+|||||.. .+....
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3446789999999999999999999997753333333333211 112222 269999999942 233333
Q ss_pred HHHhc---cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcccCc
Q 030008 82 ERYCR---AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSITDR 154 (184)
Q Consensus 82 ~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 154 (184)
..+++ .++++++|+|++++-+.... .+...+.. .++|+++|+||+|+.+..+. +++.+.+... ..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---AD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cC
Confidence 44444 35799999999876443333 12222222 36899999999999754322 2222222221 22
Q ss_pred ceeEEEeeecCCCCHH
Q 030008 155 EVCCFMISCKNSTNID 170 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~ 170 (184)
.++++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3479999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=139.73 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=104.9
Q ss_pred CCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCC
Q 030008 42 GGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.+...+.+|++..+.. +. .+..++.+|||||++++...+..+++++|++++|+|+++++++..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34566778888865532 33 345789999999999999999999999999999999999999999988888876543
Q ss_pred CCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 118 SLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
....|+++|+||+|+.+. ...++.... .....+.++++||++|.||+++|+.|.+.+.+.
T Consensus 83 -~~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 -GKDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred -CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 256899999999998642 122222111 112234689999999999999999999988653
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=134.19 Aligned_cols=152 Identities=23% Similarity=0.158 Sum_probs=105.3
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-C--CCCCccceeEEEEEeC-cEEEEEEecCCchhhH-------HhHHHHhccCCEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGYS-E--DMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIV 92 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~ii 92 (184)
++|++|||||||++++.+.... . ....|........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999976443 1 2222333333333333 5689999999966543 34455778999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+.+........ +.... .....|+++|+||+|+.......................+++++||.++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999886655543 22222 2247999999999999865554443321222333445668999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.+.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99988753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=139.58 Aligned_cols=157 Identities=16% Similarity=0.098 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
++++|+++|++++|||||+++|+..... .....|.......+..++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3689999999999999999999853100 0122233333344556678899999999998888
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcccC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 153 (184)
.....+..+|++++|+|+..+-.. .....+..+.. .++| +|+|+||+|+...... + ++...+.......
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888888999999999999875321 12222332222 3465 7899999998642221 1 1222222222223
Q ss_pred cceeEEEeeecCCCCH----------HHHHHHHHHh
Q 030008 154 REVCCFMISCKNSTNI----------DSVIDWLVKH 179 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v----------~~l~~~i~~~ 179 (184)
...+++++||++|.|+ ..|++.|.+.
T Consensus 156 ~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 156 DNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred cCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 4578999999999874 4566666544
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=158.42 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=109.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcE-EEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
....+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.+..++.+.+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3558999999999999999999998766554332 33333344444333 89999999999999999889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc---c-cCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS---I-TDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+.++...... ..+.. ....++|+++++||+|+... ..++....+.... . .....+++++||++|+|+
T Consensus 165 VVda~dgv~~qT~-e~i~~----~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISH----AKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHHHH----HHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999875322221 22221 12246899999999998643 2233333222111 0 112357999999999999
Q ss_pred HHHHHHHHH
Q 030008 170 DSVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.|..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=160.04 Aligned_cols=158 Identities=21% Similarity=0.176 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.|+++|++++|||||+++|++... +.. ...|+...+..+..++..+.+||+||++.+.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4689999999999999999986432 212 22344455555667778999999999999988888888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhHhCcCc---ccCcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQALTDEMGLKS---ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++... ...+.+. ++.. .++| +++|+||+|+.+....+.......... ......+++++||++|.|++
T Consensus 81 VDa~~G~~~-qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVMT-QTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCcH-HHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 999875311 1222222 1221 2566 999999999975432222221111110 01114689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998876653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=134.29 Aligned_cols=166 Identities=21% Similarity=0.282 Sum_probs=112.8
Q ss_pred HHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCccceeEEEEEeCcEEEEEEecCC----------ch
Q 030008 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QP 75 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----------~~ 75 (184)
.++.........|+++|.+|+|||||||++++++- +..+..|...++..+... +.++|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHH
Confidence 34445556678999999999999999999998663 334555555555555433 89999999 33
Q ss_pred hhHHhHHHHhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc
Q 030008 76 RFRSMWERYCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 152 (184)
.....+..|++. -.++++++|+..+-. .......+++.+ .++|+++|+||+|++...+..............
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 445555666643 467899999987632 333334444433 479999999999998765553333333222112
Q ss_pred Cccee--EEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 153 DREVC--CFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 153 ~~~~~--~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
...+. ++..|+.++.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 22222 78899999999999999999887653
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=159.05 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 87 (184)
..+|+++|.+|+|||||+|++++... ...+..|..........++..+.+|||||.+. +......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 36899999999999999999997653 22233344444444556678899999999653 34455667889
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++-. .....+...+.. .++|+++|+||+|+..... .....+... .+ ..+++||.+|.
T Consensus 355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg----~~-~~~~iSA~~g~ 422 (712)
T PRK09518 355 ADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG----LG-EPYPISAMHGR 422 (712)
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC----CC-CeEEEECCCCC
Confidence 999999999986522 222333333332 4799999999999864321 111111111 11 25789999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.|.+.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=159.94 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=110.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.....|+++|+.++|||||+++|....+...... |.......+...+..++||||||++.|..++.+.+..+|++++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 4568999999999999999999987665443322 33333344556678899999999999999999899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---Cc-ccCcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---KS-ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++..... ...+.. ....++|+|+++||+|+... ..+.+...+.. .. .....++++++||++|.|++
T Consensus 368 VdAddGv~~qT-~e~i~~----a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 368 VAADDGVMPQT-IEAINH----AKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EECCCCCCHhH-HHHHHH----HHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99987532111 122221 22246899999999999643 22222222211 10 01123689999999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|...
T Consensus 442 eLle~I~~~ 450 (787)
T PRK05306 442 ELLEAILLQ 450 (787)
T ss_pred HHHHhhhhh
Confidence 999998753
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-24 Score=140.67 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=130.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++++++|+.++||||+|+++|.+-+...+-.|++..... +..+++...+||++|++++......+++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999999988888888855432 34455778899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+-++..+|+....|...+.+.. ..+|.++|-||+|+.+... ..+..... +.....++-+|++...|+..
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999987654 4799999999999975432 12221111 11223478899999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|.+|...+.++
T Consensus 172 vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 172 VFAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=154.48 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-------CCCCCC----------CccceeEEEEEe-----CcEEEEEEecCCchhh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-------YSEDMI----------PTVGFNMRKVTK-----GNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-------~~~~~~----------~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~ 77 (184)
-+++++|++++|||||+++|+... +..... .|.......+.+ ..+.+.+|||||+..+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998542 111111 122211222322 2378999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
...+..++..+|++++|+|++++.+......+.... . .++|+++|+||+|+.+.. ..+....+.... ......
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~l-g~~~~~ 156 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEVI-GLDASE 156 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHHh-CCCcce
Confidence 999999999999999999999876665554443322 2 358999999999986432 222222221110 111124
Q ss_pred EEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++++||++|.|++++++.|.+.++.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999988753
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=137.23 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSAI 91 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~i 91 (184)
+|+++|++|+|||||++++.+... ...+.+|.......+..++..+.+||+||.... .......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 689999999999999999997653 233556766777777788899999999996432 22345678999999
Q ss_pred EEEEeCCCcCc-HHHHHHHHH----------------------------------------HHhc---------------
Q 030008 92 VYVVDAADPDN-LSISRSELH----------------------------------------DLLN--------------- 115 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~----------------------------------------~~~~--------------- 115 (184)
++|+|+++++. ...+...+. .+++
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 221111111 0100
Q ss_pred ---------CCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 116 ---------KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 116 ---------~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....-+|+++|+||+|+.+..+.. . +. . ..+++++||+++.|++++++.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---L-LA----R--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---H-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0001226899999999997432222 1 11 1 124899999999999999999998764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=126.33 Aligned_cols=157 Identities=24% Similarity=0.361 Sum_probs=124.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------CC---CCCCccceeEEEEEeCc-EEEEEEecCCchhhHHhHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------SE---DMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~ 82 (184)
...+.+|++.|+.++||||+++++..... .. ...+|+...+....... ..+.++|||||+++..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 34678999999999999999999996552 11 12356667777776555 8899999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++.+.++++++|.+.+..+. ...+..++.... .+|+++++||.|+.+...++.+.+.+.... ...+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~--a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFH--AEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcchH--HHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 9999999999999999998772 233333443321 299999999999998888887777776543 455799999
Q ss_pred ecCCCCHHHHHHHHHHh
Q 030008 163 CKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999998887765
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=151.30 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=102.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---------------------------------CCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
+++++|+++|++++|||||+++|+..... .....|+......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 67899999999999999999999832110 123445566666777788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---- 139 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---- 139 (184)
..+.+|||||++.+.......+..+|++++|+|+.+..++.....+...+.... ...|+++|+||+|+.+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999998887666666788999999999987311211111111122111 12479999999999753211
Q ss_pred --HHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 140 --QALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++...+.........++++++||++|+|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222222221222246799999999999987
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=129.69 Aligned_cols=110 Identities=27% Similarity=0.550 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC--CCC--C--ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE--DMI--P--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~--~~~--~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
||+|+|++|||||||+++|++..... .+. . +..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999887761 111 1 22222223333444589999999998887777778999999999
Q ss_pred EeCCCcCcHHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 030008 95 VDAADPDNLSISRSE---LHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+|+++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999988887444 4444332 24599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=156.82 Aligned_cols=158 Identities=19% Similarity=0.260 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
++...|+++|++++|||||+++|....+..... .|....... +.. .+..+.+|||||++.+..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466799999999999999999998766543322 222222222 222 35889999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---cc-cCcceeEEEeeecCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---SI-TDREVCCFMISCKNS 166 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~Sa~~~ 166 (184)
+++|+|+.++...... ..+..+ ...++|+|+|+||+|+.... .+.+...+... .. ....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999875322221 122222 22468999999999997532 22222222111 01 112368999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987654
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=135.62 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---------------------------------CCCCccceeEEEEEeCcEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+.....- ....|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997422110 022244444455666778999
Q ss_pred EEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhH
Q 030008 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDE 145 (184)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~ 145 (184)
++||||++.+.......++.+|++++|+|+.++..... ...+ .+.... ...++|+|+||+|+...... ......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887667777889999999999987632111 1111 111111 12467889999998643221 112222
Q ss_pred hCcCc--ccCcceeEEEeeecCCCCHHH
Q 030008 146 MGLKS--ITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 146 ~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+.... ......+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 21110 111234699999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=149.27 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=102.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC--CCC-------------------------------CCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++++|||||+++|+.. ... .....|+......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 357899999999999999999999841 111 01223444555566777
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK- 139 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~- 139 (184)
+..+.+||+||++.+.......+..+|++++|+|+++++++... ...+ .+.... ...|+++|+||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 88999999999998877777777899999999999987533111 1111 111111 23579999999999743221
Q ss_pred -----HHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 140 -----QALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.++.............++++++||++|.|+++
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222221111222346899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=154.60 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH---------h-HHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---------M-WERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~-~~~~~ 85 (184)
+.++|+++|+||||||||+|++++.... ..+..|.+.....+..++.++.++||||+..+.. . ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4578999999999999999999976543 2344455555666777888999999999765431 1 22232
Q ss_pred --ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 86 --RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 86 --~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.+.... +...+.+ .++|+++|+||+|+.+........+.+. +..+++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~---l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhhHH---HHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 47899999999988653222 2233322 3699999999999864322222112221 123457999999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 030008 164 KNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l 180 (184)
.+|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988765
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=133.58 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhhcc-c-ceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCc----
Q 030008 3 LWEAFLNWLRSLFF-K-QEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---- 74 (184)
Q Consensus 3 ~~~~~~~~~~~~~~-~-~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~---- 74 (184)
++++..++|+++.. . ...+|+|.|.||+|||||++.+++.+. .+++++|.+...+++..+...++++||||.
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 45677778887763 3 568999999999999999999997654 568899999999999999999999999992
Q ss_pred --hhh---HHhHHHHhccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 75 --PRF---RSMWERYCRAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 75 --~~~---~~~~~~~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
++. ...+...-.-.++++|++|++..+ +++.-...+.++... .+.|+++|+||+|..+....++......
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 111 111112223468899999998655 444445556665443 4589999999999986555554444433
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.... .....+++.++.+++.+.+.+...
T Consensus 307 ~~~~----~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 307 EEGG----EEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred hhcc----ccccceeeeehhhHHHHHHHHHHH
Confidence 2211 135778999999999888777665
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-21 Score=146.49 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCccceeEEEE--------------------Ee------CcEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----MIPTVGFNMRKV--------------------TK------GNVT 65 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----~~~t~~~~~~~~--------------------~~------~~~~ 65 (184)
.++++|+++|++++|||||+++|.+...... ...|+...+..+ .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4679999999999999999999974321110 111111111100 00 1367
Q ss_pred EEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH
Q 030008 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 66 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 145 (184)
+.++|+||++.+...+...+..+|++++|+|+.++.......+.+..+ ... ...|+++|+||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888999999999999653112222223222 111 13579999999999754222111111
Q ss_pred hCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 146 MGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
...... ....++++++||++|+|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111111 123568999999999999999999998654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=132.70 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--------C------------CCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++..... . ....|.......+..++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999853110 0 0111223344556778899999999999999888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCc---------
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGL--------- 148 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~--------- 148 (184)
+..+++.+|++++|+|+.++... ....++..... .++|+++++||+|+..... .+++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999886432 22333333322 3689999999999864211 1111111111
Q ss_pred --------------------------------C---------------cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 149 --------------------------------K---------------SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 149 --------------------------------~---------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. .....-.|++..||.++.|++.|++.|.++++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 00112357888899999999999999999876
Q ss_pred c
Q 030008 182 S 182 (184)
Q Consensus 182 ~ 182 (184)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 3
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=148.48 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=106.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC--CCC---------------CCCCccceeEEEEEe-----CcEEEEEEecCCchh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG--YSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQPR 76 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~--~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~ 76 (184)
--+++++|+.++|||||+.+|+... ... ....|.......+.+ +.+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999998521 110 011122222222322 357899999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+...+..++..+|++++|+|++++........+.. ... .++|+++|+||+|+..... ......+... ......
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~~~ 159 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGIDAS 159 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCCcc
Confidence 99999999999999999999998754444333322 221 3689999999999864322 2222221111 011112
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.++++||++|.|++++++.|.+.++.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 48999999999999999999988763
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=134.52 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC----------------Ccc-------cee-----------------EEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI----------------PTV-------GFN-----------------MRKVT 60 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~----------------~t~-------~~~-----------------~~~~~ 60 (184)
+|+++|+.++|||||++++..+.+..... .|. ++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999654432111 011 000 01123
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhc--cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
..+..+.++|+||++.+.......+. .+|++++|+|+..+.... ....+..+ .. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 44578999999999998776665554 689999999998764211 12222222 22 3689999999999875433
Q ss_pred HHHHH----hHhCcCc---------------------ccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 139 KQALT----DEMGLKS---------------------ITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 139 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+.. +.+.... ......|++.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 32222 2222100 1122358999999999999999987754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=149.40 Aligned_cols=161 Identities=21% Similarity=0.269 Sum_probs=112.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCCCCCC------------CCccc----eeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGYSEDM------------IPTVG----FNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~~~~~------------~~t~~----~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++--+|+++|+.++|||||+++++. +.+.... ..+.+ .....+.+++.++.+|||||+..+.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 2222111 11222 2334456788999999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc--ccC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS--ITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~--~~~ 153 (184)
..+..+++.+|++++|+|+.++... .....+..... .++|.++++||+|....... +++...+.... ...
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999876322 22333333332 36899999999998643222 22222221111 122
Q ss_pred cceeEEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 154 REVCCFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
..+|++++||.+|. |+..+++.|.+.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 35789999999998 689999999988763
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=147.09 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=112.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC--CCCCC----------------CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG--GYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~--~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+|+++|+.++|||||+.+|+.. .+... ...|+......+.+++.++.+|||||+..+...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7899999999999999999852 22111 12233344455778889999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcc--cCccee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSI--TDREVC 157 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~ 157 (184)
.+++.+|++++|+|+.++. ......++..... .++|+++|+||+|+...... .++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999998753 3344455554443 36899999999998643221 222222211111 223468
Q ss_pred EEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 158 CFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
++++||++|. |++.+++.|.+.++.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999988763
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=143.60 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=103.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-----CCCCccceeEEEEEe---------------------C-----cE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-----DMIPTVGFNMRKVTK---------------------G-----NV 64 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-----~~~~t~~~~~~~~~~---------------------~-----~~ 64 (184)
.+++++|+++|+.++|||||+.+|.+..... ....|+......... + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3678999999999999999999996421111 111233222111000 0 25
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 144 (184)
.+.+|||||++.+..........+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+.........
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988777777777889999999999653111111222222 111 1247899999999975433221111
Q ss_pred HhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+.... ......+++++||++|.|++++++.|.+.+.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111111 0123467999999999999999999998765
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=134.53 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--C-------------------------------CCCCCccceeEEEEEeCcEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--S-------------------------------EDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++++|||||+.+|+.... . .....|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999873210 0 0112233344555677889999
Q ss_pred EEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc------HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-C--
Q 030008 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN------LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-S-- 138 (184)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~-- 138 (184)
++||||+..+...+...+..+|++++|+|+.++.. .......+... .. ...+|+++|+||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987521 11112222211 11 1236899999999997321 1
Q ss_pred -HHHHHhHh----CcCcccCcceeEEEeeecCCCCHH
Q 030008 139 -KQALTDEM----GLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 139 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.+++...+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 22222222 111122235789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=149.84 Aligned_cols=144 Identities=22% Similarity=0.205 Sum_probs=98.4
Q ss_pred cCCCCChHHHHHHHHcCCCCCCC--CCccceeEEEEEeCcEEEEEEecCCchhhHHh------HHHHh--ccCCEEEEEE
Q 030008 26 GLQNAGKTSLVNVVATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVV 95 (184)
Q Consensus 26 G~~~sGKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~ii~v~ 95 (184)
|++|+|||||+|++++....... ..|.+.....+..++.++.+|||||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987654333 33444555556677788999999998765432 23332 4689999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++.+.. ..+...+.+ .++|+++|+||+|+.+........+.+ .+..+.+++++||++|+|++++++.
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L----~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKL----EERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHH----HHHcCCCEEEEECCCCCCHHHHHHH
Confidence 99875432 222222322 368999999999986432221111111 1122457999999999999999999
Q ss_pred HHHhh
Q 030008 176 LVKHS 180 (184)
Q Consensus 176 i~~~l 180 (184)
+.+.+
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=149.16 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEE----------------eCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~ 78 (184)
..-|+++|++++|||||++++.+..+.... ..+++....... .....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346899999999999999999976654322 222232221111 011248899999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHH-
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQALT- 143 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~- 143 (184)
.++..+++.+|++++|+|++++...... ..+. .+.. .++|+++++||+|+.+... ...+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9999999999999999999874322221 1111 1111 3689999999999964210 00000
Q ss_pred -------------hHhCcCc-------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 144 -------------DEMGLKS-------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 144 -------------~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+... ......+++++||++|+|++++.+.|...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 1111110 11234689999999999999999988653
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=124.28 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchh----------hHHhHHHHhc--
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPR----------FRSMWERYCR-- 86 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++++.++.......++.+... ..+..+ ..+.++|+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999996554433333333221 122222 3899999999432 3333444443
Q ss_pred -cCCEEEEEEeCCCcCcHHH--HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEee
Q 030008 87 -AVSAIVYVVDAADPDNLSI--SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMIS 162 (184)
Q Consensus 87 -~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 162 (184)
+.+++++++|.....+... +..++.. ...|+++|+||+|+.+................ .....+++++|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 3578899999986632222 2222222 24899999999999654333322222221111 23345789999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|+++.|++++++.|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=149.25 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
-|+++|++++|||||+++|++... ... ...|+...+..+.. ++..+.+||+||++.+.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999985332 211 23454444444433 345689999999999987777888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhHhCcCcc--cCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQALTDEMGLKSI--TDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+.++-. ....+.+. ++.. .++| +++|+||+|+.+....+.....+..... .....+++++||++|+|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987521 11222222 2222 2345 6899999999753322222222221111 11235799999999999999
Q ss_pred HHHHHHHhhh
Q 030008 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~l~ 181 (184)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-20 Score=119.54 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC----chhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|+.|||||||+++|.+.... +..|-.. .+. =.++|||| ++.+...+.....++|.+++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i-----~~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAI-----EYY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCcccee-----Eec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7899999999999999999864442 2222221 111 14599999 44555555666678999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++.+.-. ..+ .....+|+|=|+||+|+. +....+...+.+...... .+|.+|+.+|+|+++|.++
T Consensus 73 at~~~~~~p--P~f------a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFP--PGF------ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCC--chh------hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 998743211 111 122468999999999998 333444444444333222 4799999999999999988
Q ss_pred HH
Q 030008 176 LV 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=121.52 Aligned_cols=175 Identities=34% Similarity=0.564 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
||...++.+= ..++.=|++++|-.|+|||||++.+.+... ....||..+....+..++..|+-+|.+|+...+..+.
T Consensus 6 wF~~VLq~Lg--L~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 6 WFSSVLQFLG--LYKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred HHHHHHHHHH--HhccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHheecCceEEEEccccHHHHHHHHH
Confidence 5666666664 236788999999999999999998875544 3677888888888889999999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc------------Cc
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL------------KS 150 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~------------~~ 150 (184)
.++..++++++.+|+.+.+.+......++.++........|+++.+||+|.......+++...... ..
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999888888887766678999999999999876665555544332 11
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
........+-||...+.|-.+-|.++.+++
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 223345678899999888777777666543
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=141.60 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=106.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 467899999999999999999999852110 01222333433445456678999999999988
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHH-----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQ-----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+.. .++| +|+++||+|+.+..+.. ++...+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77777777889999999999875321 12222322222 2577 67899999987432221 12222211222
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~l~ 181 (184)
.....+++++||++|. +++++++.+.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 68888888887764
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=141.67 Aligned_cols=151 Identities=22% Similarity=0.260 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhh------HHhHHHHh--cc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RA 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~ 87 (184)
+..+|+++|+||+|||||+|++++..... -+..|++-....+..++.++.++|+||.-.. .....+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35679999999999999999999766544 4556777888888899999999999994332 22233343 45
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.|+++-|+|+++.+.--.+.-.+.+ .++|++++.|++|..+. .+.+++.+.+ ++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence 6999999999987543333322222 36899999999998643 2344444444 457999999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
++|.|++++.+.+.+..+++
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765543
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=131.34 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=113.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|.++|.||+|||||++++.+.+. ....++|+.+....+.+++ ..+++-|.||.-+ ....+-.++.
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3446789999999999999999997554 5567888888888877766 4499999999432 3445667788
Q ss_pred cCCEEEEEEeCCCc---CcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEE
Q 030008 87 AVSAIVYVVDAADP---DNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 87 ~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.|+..++|+|++.+ +.++.+...+.++-. .....+.|.++|+||+|+.+.... +++.+..... .+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEE
Confidence 99999999999987 555555544444322 233356899999999999632211 3333333221 5999
Q ss_pred eeecCCCCHHHHHHHHHHh
Q 030008 161 ISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~ 179 (184)
+||++++|++++++.|...
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 9999999999999887653
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=122.47 Aligned_cols=162 Identities=23% Similarity=0.377 Sum_probs=125.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.++|.++|++..|||||+-++.++.+...+..|.+.+... ++....-|.+||.+|++++..+++...+.+-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 5899999999999999999999888876666777755433 334456789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++.++++..+.+|+....+. ....+| |+|+||-|..-.-.+ ++-........++.-.++.++||+.+..|++.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999987543 224466 567999997432222 222222222333444567999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.+...+.+
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9998887654
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=131.43 Aligned_cols=112 Identities=28% Similarity=0.329 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCC----------------------CCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SED----------------------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
-+|+++|++|+|||||+++++.... ... ...++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999984211 100 0112223344577888999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
++.......++.+|++++|+|+.++... .....+. ... ..++|+++++||+|....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 9888778888999999999999876322 1222232 222 246899999999997543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=140.59 Aligned_cols=160 Identities=17% Similarity=0.141 Sum_probs=105.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC-----CCC-------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG-----GYS-------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~-----~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++. ... .....|+......+..++..+.++||||++.+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 67899999999999999999999852 000 011223333333445566789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.++.. ......+..+.. .++|.+ +++||+|+.+..+. + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999999999987532 222233332221 357755 57999999743221 1 121222111111
Q ss_pred CcceeEEEeeecCCC----------CHHHHHHHHHHhhh
Q 030008 153 DREVCCFMISCKNST----------NIDSVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l~ 181 (184)
....+++++||.+|. ++.++++.|.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 124689999999984 68889988887653
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=140.65 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=104.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 67899999999999999999999953110 001223333333455567789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..+.. ......+..+.. .++| +|+++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777788889999999999986532 122222322221 3577 7789999999753221 1 222222222122
Q ss_pred CcceeEEEeeecCCCC------------------HHHHHHHHHHhh
Q 030008 153 DREVCCFMISCKNSTN------------------IDSVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~l 180 (184)
....+++++||.+|++ +..+++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 2347899999999863 466777766554
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=128.22 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh------h------HHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR------F------RSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~------~------~~~~ 81 (184)
.+.++|+++|.||+|||||.|++.+.+.. +...+|.......+..+..++.|+||||... . ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 35689999999999999999999988764 4555666677778888899999999999211 1 1123
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----------------HHHHHh
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----------------KQALTD 144 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----------------~~~~~~ 144 (184)
...+.++|++++++|+++...... .+.+..+-.+ ..+|-++|+||.|...... ..++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 345788999999999996421111 1112222112 3588899999999754211 112222
Q ss_pred HhCcCcc---------cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 145 EMGLKSI---------TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 145 ~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+..... ..+.-.+|.+||++|+||+++.++|...+..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 2222110 0112248999999999999999999987764
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=138.68 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=102.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC-----CC-------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG-----GY-------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~-----~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|+.++|||||+++|+.. .. ......|+......+..++..+.++||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 478899999999999999999999732 00 011233444444445556778999999999998
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+.. .++|.+ +|+||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777777889999999999875322 22233332222 246654 68999998753221 1 12222222111
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~ 179 (184)
....++++++||.+|. ++.++++.|.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2223689999999875 345566665543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=128.74 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|+++|.|++|||||++++++.. ....+++|.......+.+++..++++|+||.-.- .......+++||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 689999999999999999999754 4567889999999999999999999999983221 3446667899999
Q ss_pred EEEEEeCCCcCc-HHHHHHH------------------------------------------------------------
Q 030008 91 IVYVVDAADPDN-LSISRSE------------------------------------------------------------ 109 (184)
Q Consensus 91 ii~v~d~~~~~~-~~~~~~~------------------------------------------------------------ 109 (184)
+++|+|+..+.. .+.+...
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999986653 2221111
Q ss_pred -----HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 -----LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 -----~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+.+.... .=+|.++|.||.|+......+.+.+.. ..+++||..+.|++++.+.|++.+.
T Consensus 224 vTlDd~id~l~~nr-vY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 224 VTLDDLIDALEGNR-VYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CcHHHHHHHHhhcc-eeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 222222211 127999999999998643333333332 4899999999999999999999874
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-19 Score=137.87 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.++.++|+++|++++|||||+++|+.... ......|+......+..++..+.++|+||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 36789999999999999999999984210 111122333334445567788999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++.. ....+.+..... .++| +++++||+|+.+..+. + ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888889999999999987632 222333333222 3567 7889999999753221 2 22222222222
Q ss_pred cCcceeEEEeeecCCC
Q 030008 152 TDREVCCFMISCKNST 167 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~ 167 (184)
.....+++++|+.+|.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 2346789999999875
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=140.44 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC----CccceeEEEEEe---------C-------cEEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI----PTVGFNMRKVTK---------G-------NVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~----~t~~~~~~~~~~---------~-------~~~~~~~D~~G~~~~ 77 (184)
....|+++|++++|||||++++.+........ .+++........ . ...+.+|||||++.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 45679999999999999999998654322211 233322211110 0 012789999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HH
Q 030008 78 RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQ 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~ 140 (184)
..++...+..+|++++|+|++++ +++..+. +... .++|+++++||+|+..... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888999999999999873 3333322 1111 3689999999999852111 00
Q ss_pred H-----------HHhHhCcCc----------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 141 A-----------LTDEMGLKS----------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 141 ~-----------~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
. +...+.... ......+++++||.+|+|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 111111111 01234689999999999999999887653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=136.37 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=105.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||+..+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 67899999999999999999999852110 012223333334454567789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..+.. ......+..+.. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777778899999999999987532 122222222221 357876 58999999742221 1 222222221122
Q ss_pred CcceeEEEeeecCCC----------CHHHHHHHHHHhh
Q 030008 153 DREVCCFMISCKNST----------NIDSVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l 180 (184)
....+++++||.++. |+..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 235789999999875 5778888888755
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-19 Score=123.96 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce-----eEEEEEe-CcEEEEEEecCCchhhHHhH-----HHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF-----NMRKVTK-GNVTIKLWDLGGQPRFRSMW-----ERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~-~~~~~~~~D~~G~~~~~~~~-----~~~~~~ 87 (184)
.++|+++|++|+|||||+|++++.........+.+. ....+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999975543322222221 0111111 12468999999965322111 122567
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---------HHHHHhHhCcCcc----c--
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---------KQALTDEMGLKSI----T-- 152 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~----~-- 152 (184)
+|+++++.|.. +......+...+.. .+.|+++|+||+|+..... .+++.+.+..... .
T Consensus 81 ~d~~l~v~~~~----~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISSTR----FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCCC----CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888875432 33343333333333 2589999999999853211 1222222221111 1
Q ss_pred CcceeEEEeeec--CCCCHHHHHHHHHHhhhcC
Q 030008 153 DREVCCFMISCK--NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~l~~~ 183 (184)
....+++.+|+. .+.|+..+.+.|...|++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 123468899998 5789999999999988753
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-19 Score=124.49 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=98.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC---------------------CCccceeEEEE-----EeCcEEEEEEecCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~D~~G~ 74 (184)
+|+++|++++|||||+++|+........ ..+.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864332110 00111111112 123478999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-------CCHH-------
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-------LSKQ------- 140 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~------- 140 (184)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... ...+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987765432 222333222 34899999999997521 0011
Q ss_pred HHHhHhCcCcc------cCcceeEEEeeecCCCCHH--------HHHHHHHHhhh
Q 030008 141 ALTDEMGLKSI------TDREVCCFMISCKNSTNID--------SVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~l~ 181 (184)
++......... ......+++.|++.++++. ++++.|.+.++
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 11111111100 1112237789999998877 77777776654
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=126.50 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=79.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--C------------------CCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--E------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++..... . ....++......+..++.++.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743211 0 0122333344556677889999999999888888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+...+..+|++++|+|+.++..... ...+.... ..++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCC
Confidence 8889999999999999988654322 22222221 24689999999999764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=137.25 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC--CC---------------------------------CCCCccceeEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY--SE---------------------------------DMIPTVGFNMRKVT 60 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~~ 60 (184)
.++.++|+++|++++|||||+++|+...- .. ...-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 36779999999999999999999983221 00 01112333444455
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALS- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~- 138 (184)
.++..+.++||||++.+.......+..+|++++|+|+..+-...... ..+...+. ..|+|+++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchhH
Confidence 67789999999999988766666679999999999998653111111 11111111 257899999999974322
Q ss_pred -HHHHHhHhCcCcc--c-CcceeEEEeeecCCCCHHHH
Q 030008 139 -KQALTDEMGLKSI--T-DREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 139 -~~~~~~~~~~~~~--~-~~~~~~~~~Sa~~~~~v~~l 172 (184)
..++...+..... . ....+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222222211000 0 22467999999999999764
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=127.68 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=81.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--C------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--S------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++.... . .....|+......+..++.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999973111 0 11222344445567778899999999999988888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...++.+|++++|+|+.++.... ....+.... ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 889999999999999998763222 122233222 246899999999998743
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-18 Score=125.74 Aligned_cols=155 Identities=24% Similarity=0.332 Sum_probs=113.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
.-..|.++|-.|+|||||+|++++... .+..+.|..+..+.+... +..+.+-||.|.- .|.+..+. .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 457999999999999999999996554 356788999888888866 5789999999932 23333333 4
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|+++.|+|++++.....+.. ...++.......+|+|+|.||+|+.............. . ..+++||++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v~iSA~~ 340 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPVFISAKT 340 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeEEEEecc
Confidence 67899999999999964444433 23334444445699999999999875543111111111 1 489999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|+|++.|.+.|...+..
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988763
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=134.73 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=104.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC------CC------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|++++|||||+++|.+. .. ......|+......+..++.++.++||||++.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467899999999999999999999721 10 011233555555556667788999999999988
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-HHHHhHhCc----Ccc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-QALTDEMGL----KSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~~~~~~~~~----~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+ .. .++| +|+++||+|+.+.... +.+..++.. ...
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 77766777789999999999875321 122222222 21 3578 5788999999753221 112112111 111
Q ss_pred cCcceeEEEeeec---CCCC-------HHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCK---NSTN-------IDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~l~ 181 (184)
.....+++++|+. +|.| +.+|++.|.+.++
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1234678888876 4555 7888888887664
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=133.13 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=101.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+..-. ......|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 36789999999999999999998873110 001122333444556677
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGI-PLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 135 (184)
+..++++|+||++.|.......+..+|++++|+|+.++.- + ....+.+..... .++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 8899999999999999888899999999999999987421 1 223333332211 245 5788999999762
Q ss_pred CC-C-------HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 136 AL-S-------KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 136 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. . .+++...++........++++++||.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 122222222222223346899999999999853
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=139.04 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=103.0
Q ss_pred HHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCC-------------C----------------------CCCc
Q 030008 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSE-------------D----------------------MIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-------------~----------------------~~~t 51 (184)
+..++.....++.++|+++|++++|||||+++|+.....- . ...|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4455655566788999999999999999999998432110 0 1112
Q ss_pred cceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 52 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
+......+..++.++.++||||++.+.......+..+|++++|+|+..+..... ...+... ... ...++++|+||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~-~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIA-SLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHH-HHh--CCCeEEEEEEec
Confidence 223334455677789999999999887666667889999999999976532111 1111111 111 136789999999
Q ss_pred CCCCCCC--HHHHHhHhCcC--cccCcceeEEEeeecCCCCHHH
Q 030008 132 DKPGALS--KQALTDEMGLK--SITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 132 D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+.+... .+++...+... .......+++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9974222 12222222110 0111335799999999999874
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=135.02 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=81.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCCC---------CCC-------------CCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGYS---------EDM-------------IPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~~---------~~~-------------~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++++|||||.++|+. +... ... ..++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 1110 000 111222334567788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+.......++.+|++++|+|+.++... .....+... ...++|+++++||+|....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9999988888888999999999999876322 222333222 2257999999999998643
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=126.99 Aligned_cols=162 Identities=21% Similarity=0.261 Sum_probs=112.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEe-CcEEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|.++|.||+|||||++++...+ +..++++|+-++...++. ....|++-|.||.-+ .....-.++.++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3567899999999999999999644 567888999888877775 445599999999332 244566778899
Q ss_pred CEEEEEEeCCCcCc---HHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADPDN---LSISRSELHDLLNK-PSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|+|++..+. .+.......++-.+ .....+|.++|+||+|... ....+++.+.+...... .....+||
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~---~~~~~ISa 315 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW---EVFYLISA 315 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC---Ccceeeeh
Confidence 99999999985542 33333333333222 3345789999999999543 33344444444322111 11222999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
.+++|++++...+.+.+.+.
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999998887653
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=132.30 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=101.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+..- .. .....|+......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3678999999999999999999987411 00 01122333444556677
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC-
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKP- 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~- 134 (184)
+..+.++|+||+++|.......+..+|++++|+|+..+.- + ....+.+..... .++| +|+++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8899999999999998888888899999999999987531 1 122333332221 3555 77999999953
Q ss_pred -CC--CCHH----HHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 135 -GA--LSKQ----ALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 135 -~~--~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+. ...+ ++...+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 22 1122 2222222222223357899999999999864
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-19 Score=136.55 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=124.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+.+||+++|+.|+||||||-++....+.+...+-..... ..+.-+.+..+++|++..+..+......+++++++++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 46789999999999999999999998888766555444322 2233345668999999888888888888999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++++++++++.+...|..++.+.. ...+|+|+|+||+|..+.... .++...+....+.+ .+++|||++..+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE---tciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE---TCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH---HHHhhhhhhhhh
Confidence 9999999999999988888887644 246899999999998754332 22333333332222 489999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
+.++|..-..++
T Consensus 163 ~~e~fYyaqKaV 174 (625)
T KOG1707|consen 163 VSELFYYAQKAV 174 (625)
T ss_pred hHhhhhhhhhee
Confidence 999998766553
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=114.65 Aligned_cols=162 Identities=27% Similarity=0.359 Sum_probs=117.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhc---cCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~ii~ 93 (184)
.+.-.|+++|+.+||||+|+-++.++... ...+++..+...+..++....++|.||+.+.+.....+++ ++.+++|
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 44578999999999999999999977543 4445555666667777777999999999999988888876 7899999
Q ss_pred EEeCC-CcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc----------------------
Q 030008 94 VVDAA-DPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------------------- 148 (184)
Q Consensus 94 v~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------------------- 148 (184)
|+|.. .........+++..++... ...++|++++.||.|+......+.+.+.+..
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99995 3445566666666665544 3567899999999999654443222211110
Q ss_pred ---------C----cccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 149 ---------K----SITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 149 ---------~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. ........+.++|++++ +++++.++|.+++
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 00013356888999998 7999999988754
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=130.34 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=105.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC---------------------------------CCCCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG---------------------------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+++++++++|++.+|||||+.+|+.+ +..++..-|+......+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 67899999999999999999998811 112233445555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH----HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
+.++++|+||+..|-......+.++|+.++|+|+.+++-...+ ...-..++... ..-..+|+++||+|..++.+.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccCHH
Confidence 8999999999988887777788899999999999987421111 00111111111 123678999999999875432
Q ss_pred --HHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 140 --QALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 --~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++..+.. .........+|+++|+.+|+|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 22222222 233334457899999999998764
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-18 Score=129.86 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--C---------------------------------CCCCccceeEEEEEeCcE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--E---------------------------------DMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~---------------------------------~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|++++|||||+.+|+...-. . ...-|+......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998732110 0 011133344445666778
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHH
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QAL 142 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~ 142 (184)
.+.++||||++.+.......+..+|++++|+|+..+.... ..+.+... ... ...++++++||+|+.+.... ++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999999777777888999999999998653211 11111111 111 13468999999999753221 112
Q ss_pred HhHhCcCc--ccCcceeEEEeeecCCCCHHH
Q 030008 143 TDEMGLKS--ITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 143 ~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
...+.... ......+++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22221100 111245799999999999885
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=118.52 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCC----------------CCCccceeEEEEEe----------CcEEEEEEecC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--SED----------------MIPTVGFNMRKVTK----------GNVTIKLWDLG 72 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~~~----------------~~~t~~~~~~~~~~----------~~~~~~~~D~~ 72 (184)
+|+++|+.++|||||+.+|+.... ... ..-|+......+.+ ....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999984321 000 01122211112222 26789999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
|++.+......+++.+|++++|+|+.++..... ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998754433 222232222 357999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=135.99 Aligned_cols=115 Identities=25% Similarity=0.243 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+..+|+++|+.|+|||||+++|+.... . .....|+......+...+..+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999984210 0 0123355555566778889999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+.++...... ..+..+.. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 988899999999999999999987654433 22232222 36899999999998753
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=131.24 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCccceeEEE-----------------EE--------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----MIPTVGFNMRK-----------------VT-------------- 60 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----~~~t~~~~~~~-----------------~~-------------- 60 (184)
..+++|+++|+...|||||+.+|++...... ..-|+...+.. ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4679999999999999999999995332111 01111111110 00
Q ss_pred --eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 61 --KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 61 --~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.....+.++|+||++.+.......+..+|++++|+|+.++.......+.+... ... ...++|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHH
Confidence 00246899999999999888778888999999999998742112222333221 111 1257899999999975333
Q ss_pred HHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 139 KQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..+....+.... ......+++++||++|+|++.|++.|.+.++
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222222222111 1124568999999999999999999997665
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=127.63 Aligned_cols=157 Identities=22% Similarity=0.304 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...-|+++|+..-|||||+..+-......... -|-.+-...+.. +...++|.||||++.|..+..+-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999997655433221 122222333333 3468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc----cCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----TDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+.++- .....+.+.+.+..+.|++++.||+|+.+. .+.....+...... ......++++||++|+|
T Consensus 84 LVVa~dDGv-----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV-----MPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc-----chhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999862 111222233344468999999999999854 33333333332221 12346799999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
+++|++.+.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=106.06 Aligned_cols=164 Identities=15% Similarity=0.264 Sum_probs=119.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeE-EEEEeC---cEEEEEEecCCchhh-HHhHHHHhccC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNM-RKVTKG---NVTIKLWDLGGQPRF-RSMWERYCRAV 88 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~-~~~~~~---~~~~~~~D~~G~~~~-~~~~~~~~~~~ 88 (184)
+-+..+|+++|..++|||+++.++..+... ....+|++-.+ ..+..+ ...+.++||.|-... ..+-..++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 357789999999999999999999865543 34556666433 333322 246899999997766 55566677888
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|||..+++||..+.-.-..+-+....+.+|+++.+||.|..+.-. ..........+......+++++.+...
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRPS 162 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccchh
Confidence 99999999999999988765555555555666799999999999964322 111222222233344689999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
+=+.|..+...+.+
T Consensus 163 L~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 163 LYEPFTYLASRLHQ 176 (198)
T ss_pred hhhHHHHHHHhccC
Confidence 99999998887654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=105.34 Aligned_cols=104 Identities=24% Similarity=0.274 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHHHHhccC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAV 88 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~ 88 (184)
+|+++|.+|+|||||+|+|++... ...+..|....+..+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 344566666766667778889999999994321 11233344889
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
|++++|+|+.++.. ......+..+ + ..+|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877321 1122222333 1 57999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=124.24 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=112.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHH
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWE 82 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~ 82 (184)
.++..++|+++|+||+|||||+|+|.+.+. ++.+.+|.+.....++.+++++.+.||+|..+. -....
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 346789999999999999999999997764 456667777777788899999999999995541 11233
Q ss_pred HHhccCCEEEEEEeCCCc--CcHHHHHHHHHHHhc-----CCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCc
Q 030008 83 RYCRAVSAIVYVVDAADP--DNLSISRSELHDLLN-----KPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDR 154 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 154 (184)
..+.++|++++|+|+... ++...+...+...-. -..+.+.+++++.||+|+...... ......+... .-..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCc
Confidence 456889999999999433 333333333333211 122345799999999999754221 1111111111 1111
Q ss_pred cee-EEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVC-CFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~-~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+ ..++|+++++|+++|...+...+..
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 223 4459999999999999998877653
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=114.09 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=127.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE---eC-cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~---~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++++++|..|.||||+..+...+.+...+.+|++....... .. ...|..|||.|++.+.....-++=+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 4689999999999999999999999999999999997766532 22 3789999999999998887777777899999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|+...-+..++..|..++...+ .++|+++++||.|......... .. ..-.-..+.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k---~v--~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAK---PV--SFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccc---cc--eeeecccceeEEeecccccccccch
Confidence 999999988889999999887654 4699999999999864431111 11 1122234579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99888764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=118.21 Aligned_cols=121 Identities=24% Similarity=0.312 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE--eCcEEEEEEecCCchhhHHhHHHH---hccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERY---CRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~---~~~~~~ii 92 (184)
+.-.|+++|+.|||||+|+.+|.++.......+. ........ .....+.++|+||+++.+...... ..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 3457899999999999999999988554333332 33222111 134579999999999998765554 78899999
Q ss_pred EEEeCCC-cCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCH
Q 030008 93 YVVDAAD-PDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
||+|+.. ........+++.+++... ....+|++|++||.|+......
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 9999974 344555666665554332 2356899999999999765443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=133.87 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------C------------CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+..... . ....|+......+..++..+.++||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 34469999999999999999999732110 0 122344445556777889999999999998
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.......+..+|++++|+|+.++...... ..+.... ..++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence 888888889999999999999876443322 2222222 23689999999999874
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=114.13 Aligned_cols=160 Identities=13% Similarity=0.015 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHH----HH
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE----RY 84 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~----~~ 84 (184)
++|+++|.+|+|||||+|++++...... ...|...........+..+.++||||.... ..... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999997654322 234555566666667889999999994332 11111 22
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC----cCcccCcceeEE
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG----LKSITDREVCCF 159 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 159 (184)
..+.|++++|+++.+.. ......+++...+.. ..-.++++|+|++|.......+++..... ...... +-.++
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~r~~ 157 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GGRYV 157 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CCeEE
Confidence 35679999999997621 122223334443331 12268899999999876544333322221 111111 11243
Q ss_pred Eee-----ecCCCCHHHHHHHHHHhhhc
Q 030008 160 MIS-----CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~S-----a~~~~~v~~l~~~i~~~l~~ 182 (184)
..+ +.++.++++|++.|.+.+.+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 333 55678999999999998875
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-17 Score=127.96 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=80.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc-CCC-CC------C----------------CCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT-GGY-SE------D----------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~-~~~-~~------~----------------~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++++|||||+++++. .+. .. . ...++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5667999999999999999999863 111 00 0 0111222334566788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
|+..+.......+..+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888877888899999999999987521 12223332 2222 4689999999999853
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=118.10 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=98.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE------------------------eCcEEEEEEecCCc-
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT------------------------KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~------------------------~~~~~~~~~D~~G~- 74 (184)
|+++|.||+|||||+|++++.... ..+++|..+...... ....++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999977643 234455554433221 13367999999996
Q ss_pred ---hhhHH---hHHHHhccCCEEEEEEeCCCc-------------CcHHHH---HHH-----------------------
Q 030008 75 ---PRFRS---MWERYCRAVSAIVYVVDAADP-------------DNLSIS---RSE----------------------- 109 (184)
Q Consensus 75 ---~~~~~---~~~~~~~~~~~ii~v~d~~~~-------------~~~~~~---~~~----------------------- 109 (184)
++... .....++++|++++|+|+... +....+ ...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 344468999999999999731 111111 000
Q ss_pred ---------------------HHHHhcCC---------------------CCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 110 ---------------------LHDLLNKP---------------------SLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 110 ---------------------~~~~~~~~---------------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+..++... ....+|+|+|+||+|+... .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 00000000 1234799999999997532 22222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHH-HHHHhhhc
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVID-WLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~l~~ 182 (184)
. .....+++++||+.+.+++++.+ .+.+++++
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 12244699999999999999998 69998865
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=132.21 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=84.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--C------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--Y------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+... . . .....|+......+..++.++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 345689999999999999999997421 0 0 1223344455566778889999999999998
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+...+...+..+|++++|+|+.++..... ...+.... ..++|+++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCCCC
Confidence 88888889999999999999987632221 22222222 24689999999999874
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=117.46 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=98.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEE-eCcEEEEEEecCCchhhHH-----hHHHHhccCCEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAI 91 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~i 91 (184)
||+++|+.+|||||+.+.+..+..+. ...+|.......+. .+...+.+||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999988655432 23467777777775 5568999999999876644 356778999999
Q ss_pred EEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cC---cceeEEEee
Q 030008 92 VYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TD---REVCCFMIS 162 (184)
Q Consensus 92 i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~S 162 (184)
|||+|+...+-...+ ...+..+... .+++.+.+.+.|+|+..+....+..+....... .. ....++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999855433333 2333333222 257899999999999865444333222221111 11 137899999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
..+. .+-+.|..+++.|.
T Consensus 159 I~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp TTST-HHHHHHHHHHHTTS
T ss_pred CcCc-HHHHHHHHHHHHHc
Confidence 9984 67777777777654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=123.52 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC-----------------CCCCCCccceeEEEEEeCc---EEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY-----------------SEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~---~~~~~~D~~G~~~~ 77 (184)
+--++.|+.+..-|||||..+++..-. .+...-|+......+.+.+ +.+.++||||+-.|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 445889999999999999999883111 1122234443444454544 89999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
.....+.+.-|+++++|+|+..+---+.....+..+- .+..+|.|+||+|+... .++.+..+....+. ....+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~-~~~~~ 211 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELFD-IPPAE 211 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHhc-CCccc
Confidence 9999999999999999999998743344444444442 46899999999999755 33444443332222 22336
Q ss_pred EEEeeecCCCCHHHHHHHHHHhhh
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++.+||++|.|+++++++|++.++
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCC
Confidence 899999999999999999999875
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=130.53 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=82.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+. +.. . .....|+......+...+..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999973 111 0 1122344444555677889999999999988
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.......+..+|++++|+|+..+-.... ...+..... .++|.++++||+|+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 87778888899999999999987632222 222222222 3689999999999864
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-17 Score=120.67 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=99.8
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+......+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4566666677778889999999999999999999999999999999999874 345566677778887776
Q ss_pred CCCCcEEEEeeCCCCCCCC------------------CHHHHH----hHhCcCc-ccCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGAL------------------SKQALT----DEMGLKS-ITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~------------------~~~~~~----~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||.|+..+. ..+... ..+.... .....+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 6789999999999964311 111111 1111111 1134566788999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 8887754
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=115.16 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=107.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYC 85 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~ 85 (184)
.++.++|+++|..|+||||+||+++++....- ...+.........++...+.+||+||.+. ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45789999999999999999999996444221 11222222222334556799999999554 566677788
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----------C--H-HHHHhHhCcCc-c
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----------S--K-QALTDEMGLKS-I 151 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~--~-~~~~~~~~~~~-~ 151 (184)
...|.+++++++.++. +..-...+.++.... .+.++++++|.+|..... + . +.+..+..... .
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 222234444444332 348999999999985431 0 0 11111110000 0
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
...=.|++..|...++|++.+...++..++.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1112368888899999999999999988753
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=119.99 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=100.1
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.+||.+|+...+..|..++.+++++++|+|+++. ..+......+..++....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 4566666677788889999999999999999999999999999999999963 346666677888888777
Q ss_pred CCCCcEEEEeeCCCCCCCC-----------------CHHH----HHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGAL-----------------SKQA----LTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~-----------------~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||.|+.... ..+. +...+..... ....+..+.+||.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7789999999999974311 1111 1111111111 224566788999999999999998
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8877654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=121.21 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=114.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+...-|.++|+..-|||||+..|-+....... ..-++-..-.+. .+..++|.||||+..|..+..+-..-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45577899999999999999999765543221 112222222233 4578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc----cCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----TDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 168 (184)
+|+.+.|+ ++....+.+.+....+.|+|+++||+|.... .++...+++..... ...+.+++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999987 2333333344555578999999999998744 44554444443222 23457899999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++.|-+.+....
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999999887654
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=122.99 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=72.9
Q ss_pred EEEEEEecCCchhh-----HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 64 ~~~~~~D~~G~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
..+.++||||.... .......+..+|++++|+|+....+... ..+...+.... +..|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 56899999996432 3344557899999999999987533322 22333333221 2359999999999864322
Q ss_pred --HHHHHhHhCcC--cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 139 --KQALTDEMGLK--SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 139 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.+....... ........++++||++|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333332211 11122346999999999999999999876
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=117.44 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEE------------------------eCcEEEEEEecCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~------------------------~~~~~~~~~D~~G 73 (184)
++|+++|.||+|||||+|++++..... .+++|+........ .....++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776542 34555554443321 1236689999999
Q ss_pred ch----h---hHHhHHHHhccCCEEEEEEeCC
Q 030008 74 QP----R---FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 74 ~~----~---~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.. . ........++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2 2334445589999999999997
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-17 Score=123.45 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh--
Q 030008 3 LWEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-- 76 (184)
++++..+++.++. -.+.-+++++|-||+|||||+|.+..... .+..++|.....+++.+.-..+++.||||.-.
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 6788888988887 35678999999999999999999887654 45677888888889988888999999999321
Q ss_pred --hHHh-----HHHHhccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 77 --FRSM-----WERYCRAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 77 --~~~~-----~~~~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
-++. +....+--.+++|+.|++..+ |...-...+.++ .....++|.|+|+||+|........+-.+.+.
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 1111 112223346789999998765 444444444444 23345799999999999976544332222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.........+++.+|+.+.+||-++....++.+
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 222223346799999999999988776666554
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=123.22 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=77.8
Q ss_pred EcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHH
Q 030008 25 IGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 25 ~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 84 (184)
+|++++|||||+++|...... .....|++.....+..++..+.++||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999632110 012234445556677888999999999999888888888
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+..+|++++|+|+......... ..+..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999886544332 22222222 3689999999999864
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=114.47 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=69.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||+|....... ....+|.++++.+...++....... ..+. ...++|+||+|+........
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHH
Confidence 4578999999996643322 3556999999987555543333221 1211 23489999999976543333
Q ss_pred H----HhHhCcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 142 L----TDEMGLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 142 ~----~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. ...+...... ....|++.+||+++.|++++++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 2233221111 12247999999999999999999998754
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-18 Score=115.54 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++.|+|..|+|||+++.+..++.++.-+..|++..... ++. .-+...+||..||+++..+..-+++.+.+.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 689999999999999999999988887777888844322 222 235688999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+++.-+|+....|..++... ......|+++..||+|....... +....+......+.-..++++|++...++++
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccCccceeeeccccccChhH
Confidence 9999999999999888887554 33345789999999998643221 1111221111222233589999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
..+.++..+..
T Consensus 185 a~r~lVe~~lv 195 (229)
T KOG4423|consen 185 AQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHh
Confidence 99998877543
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=112.72 Aligned_cols=117 Identities=18% Similarity=0.053 Sum_probs=74.3
Q ss_pred EEEEEEecCCchhhH---HhH---HHHhcc--CCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 64 VTIKLWDLGGQPRFR---SMW---ERYCRA--VSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~---~~~---~~~~~~--~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++.++|+||+.+.. ... ...+.. ++++++++|+.......... .++....... ..++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 379999999976542 222 222333 79999999997654443332 2222111111 1469999999999998
Q ss_pred CCCCHHHHHhHhCc-------------------------CcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 135 GALSKQALTDEMGL-------------------------KSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 135 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+..+.++....+.. ........+++++|++++.|++++++.|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76554444333321 000122246899999999999999999988764
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-16 Score=110.56 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=77.6
Q ss_pred cEEEEEEecCCchhh------HHhHHHHhc--cCCEEEEEEeCCC---cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 63 NVTIKLWDLGGQPRF------RSMWERYCR--AVSAIVYVVDAAD---PDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~------~~~~~~~~~--~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
..++.++|||||-+. +..+...+. ..-+++|++|... +.+|-...-+.-+++.. .+.|+|+|.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 356899999997543 222222222 2467899999864 44554445555556554 569999999999
Q ss_pred CCCCCCCHHHHHhHhCcCc-----------------------ccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 132 DKPGALSKQALTDEMGLKS-----------------------ITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
|+.++....++...+.... .....+..+-+||.+|.|.+++|..+...+.+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9987655444333322100 11234678999999999999999999887764
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=110.95 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-------------------------CCCCCccceeEE-EEE------eCcE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-------------------------EDMIPTVGFNMR-KVT------KGNV 64 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-------------------------~~~~~t~~~~~~-~~~------~~~~ 64 (184)
..+++|.++|+..-|||||..++.+-... ..+.+ ..+... ... .--.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 57899999999999999999999831110 00000 000000 000 1125
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 144 (184)
.+.|+|.||++......-+-..-.|++++|++++.++......+.+..+--. .-+.+|+|-||+|+.+.+...+-.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 6899999999988777666666679999999999887666666555443211 2478999999999986544333222
Q ss_pred HhCc--CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 145 EMGL--KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 145 ~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++. ......+.|++++||..+.|++.++++|...++.
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 2221 1122345689999999999999999999998763
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-15 Score=111.25 Aligned_cols=135 Identities=17% Similarity=0.286 Sum_probs=102.9
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC----------cHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~ 117 (184)
..+|.|.....+..++..+.++|.+||...+.-|.+++.+++++++|+++++.+ .+......+..+++..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 467888888889999999999999999999999999999999999999998642 3344456778888888
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-----------------HHHH----HhHhCc-CcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 118 SLSGIPLLVLGNKIDKPGALS-----------------KQAL----TDEMGL-KSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~~~-----------------~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
...+.++|+.+||.|+..+.- .++. ...+.. .......+.++.++|++-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 888899999999999854211 1111 111111 111224566788999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
..+.+.+
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 8887754
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=94.55 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC----chhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
|++++|..|+|||||.+++-+...- +-.|-. +.+.+ --.+|||| +..+.+.+......+|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 6899999999999999999744332 111111 11111 12579999 33344444555688999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++.-. ..+. ....+|+|-|+||+|+.+..+.+...+.+.+... -++|.+|+.+..|++++++.|
T Consensus 74 and~~s~f~--p~f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFP--PGFL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCC--cccc------cccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHH
Confidence 999863211 1111 1234679999999999875555544444443332 269999999999999999998
Q ss_pred HHh
Q 030008 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 764
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-15 Score=107.57 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCccceeEE--EEEeCc--EEEEEEecCCchhhH---H--
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED----------MIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFR---S-- 79 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~---~-- 79 (184)
.++|+++|++|+|||||+|++++...... ..+|...... .+..++ ..+.+|||||..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998776432 2334433322 233333 679999999932210 0
Q ss_pred ---------hHH------------HHhc--cCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 80 ---------MWE------------RYCR--AVSAIVYVVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 80 ---------~~~------------~~~~--~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
... ..+. .+|+++|+++..... +... ...+..+ . ..+|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcCC
Confidence 000 1111 357888988887522 2222 2222333 2 1589999999999975
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-15 Score=111.06 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-----------------CCCCCCCccceeEEEEE-----eCcEEEEEEecCCchhh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-----------------YSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-----------------~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~ 77 (184)
-+..++.+-.-|||||..++...- ..+...-|+....-.+. .+.+.+.++||||+-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 456889999999999999988311 11222223332222222 24588999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDR 154 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 154 (184)
.-...+.+..|.++++|+|++.+-.-+.+...+..+- .+.-+|.|+||+|+...... +++...++....
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~--- 161 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS--- 161 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc---
Confidence 8888888889999999999998743344444444442 36889999999999765332 333344433322
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+.+||++|.||+++++.|++.++.
T Consensus 162 --dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 --DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred --hheeEecccCCCHHHHHHHHHhhCCC
Confidence 37899999999999999999998763
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=108.78 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=104.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-----------------------------------CCCCCCCccceeEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+..++.+-+|+..=||||||.+|+... ..+...-|+...++.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 356899999999999999999998211 012233466677777888
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
...+|.+.||||+++|......-...||++|+++|+..+- ++.. ...+..++. -..+++.+||+|+.+..+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCHH
Confidence 8899999999999999888888888899999999997652 1112 123344443 3688999999999876442
Q ss_pred --HHHHhHhCcCcc--cCcceeEEEeeecCCCCHH
Q 030008 140 --QALTDEMGLKSI--TDREVCCFMISCKNSTNID 170 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 170 (184)
+++...+..... ......++|+||+.|+||-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333333322111 1223479999999999874
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=104.10 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=85.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+...|+++|.+|+|||||++.+.............+.. ......+..+.++|+||.. ......++.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEe
Confidence 455789999999999999999998542221111122211 1123356789999999854 233345688999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCCCCCC-HHHHHhHhCcCcc--cCcceeEEEeeecCCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPL-LVLGNKIDKPGALS-KQALTDEMGLKSI--TDREVCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 167 (184)
+..+..... ..+...+.. .+.|. ++|+||+|+.+... .++..+.+..... ...+.+++++||+++-
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 986543222 122222222 34674 55999999974322 2222322222111 2234689999999873
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=114.25 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=102.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc--------------------CC-------------CCCCCCCccceeEEEEEeCcE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT--------------------GG-------------YSEDMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~--------------------~~-------------~~~~~~~t~~~~~~~~~~~~~ 64 (184)
.+++++++|+..+|||||+.+++. ++ ..+...-|.......++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 568999999999999999999881 11 111222233344444666678
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.+++.|+||+..|......-..++|+.++|+|++..+ .|. ..++ ...++... ....+||++||+|++++.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEeecccccCccH
Confidence 8999999999888877777778899999999998653 121 1111 11222221 1467899999999998754
Q ss_pred H--HHHHhHh-----CcCcccCcceeEEEeeecCCCCHHH
Q 030008 139 K--QALTDEM-----GLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 139 ~--~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
. +++...+ ....+......|++||+.+|+|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2 3333332 2344556667899999999998654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=119.89 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=78.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC---------------CCCCC---CCCccceeEE----EEEeCcEEEEEEecCCch
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG---------------GYSED---MIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~~~D~~G~~ 75 (184)
+..+|+++|+.++|||||+++|+.. .+... ...|+..... .+...++++.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999742 11110 1223332221 244567899999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+.......+..+|++++|+|+..+-.... ...+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999987532211 122222222 3578899999999853
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=101.09 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHH----H
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWER----Y 84 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~----~ 84 (184)
++|+++|..||||||++|.+++...... ...|...........+..+.++||||-.. ....+.. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999997665322 23355566666678889999999999321 1111222 2
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH-----hCcCcccCcceeE
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE-----MGLKSITDREVCC 158 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (184)
..+.+++++|++..... ........+..++... .-..++||.|..|.......+++.+. +.....+. +-.+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCEE
Confidence 35679999999998321 1222334455555432 22578999999998766554333331 11111111 1246
Q ss_pred EEeeec------CCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCK------NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~------~~~~v~~l~~~i~~~l~~~ 183 (184)
+..+.. ....+.+|++.|...+.++
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 666554 3356888888888877654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=116.96 Aligned_cols=125 Identities=23% Similarity=0.249 Sum_probs=81.4
Q ss_pred HHHHHHHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCC--CCC----------------CCCccceeEEEEE----
Q 030008 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGY--SED----------------MIPTVGFNMRKVT---- 60 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~----------------~~~t~~~~~~~~~---- 60 (184)
++..+.+.+.+. ++--+|+++|+.++|||||+.+++.... ... ..-|+......+.
T Consensus 4 ~~~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 4 KKMVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred hHHHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEec
Confidence 344445544443 2345899999999999999999984221 000 0012222212222
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++..+.++||||+..+.......+..+|++++|+|+..+-... ....+..... .+.|.|+++||+|..
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 24678999999999999888889999999999999998763222 2223332222 246789999999975
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-15 Score=105.18 Aligned_cols=115 Identities=18% Similarity=0.096 Sum_probs=60.1
Q ss_pred EEEEEecCCchhhHHhHHHH------h--ccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERY------C--RAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~------~--~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++|||||.++-..+... + ...-++++++|+....+...... .+...... .....|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 79999999998875443332 2 23457899999976554333322 12211110 013699999999999986
Q ss_pred CCC--------------------HHHHHhHhCcCcccCcce-eEEEeeecCCCCHHHHHHHHHHhh
Q 030008 136 ALS--------------------KQALTDEMGLKSITDREV-CCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 136 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
... ...+...+.......... .++++|+.+++|+++++..|.+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 011111221112222223 799999999999999999987765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-14 Score=105.46 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=111.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC--C------------CCCCcccee----EEEEEeCcEEEEEEecCCchhhHHh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS--E------------DMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~--~------------~~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
--+|+++.+..-|||||+.+++.+... . ......++. -..+.++++.+.++||||+-.|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 347999999999999999999965431 0 111112211 1226678899999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---Cc--ccCcc
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---KS--ITDRE 155 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~--~~~~~ 155 (184)
.++.+.-.|++++++|+.++. .......+...+.. +.+-|+|+||+|....-..+-+.+.+.+ .. ....+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998763 22333334444443 5666888999998764333322222222 11 12356
Q ss_pred eeEEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 156 VCCFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
+|++..|+..|. +++.||+.|.+.++.
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 789999999874 689999999988764
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=102.66 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=62.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC-----------------cEEEEEEecCCch--
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQP-- 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~-- 75 (184)
...++|+++|.||+|||||+|++++.... ..+++|+......+... +.++.++|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46789999999999999999999876543 34667777776665433 3358999999932
Q ss_pred -----hhHHhHHHHhccCCEEEEEEeCC
Q 030008 76 -----RFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 76 -----~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.........++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23334555678899999999984
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-13 Score=96.89 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhH----------HhHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWE 82 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~ 82 (184)
....++|+++|.+|+|||||+|++++..... ....|..........++..+.++||||..... ....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 3577999999999999999999999765421 22344444444455667889999999954331 1122
Q ss_pred HHhc--cCCEEEEEEeCCCc-CcHH--HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 83 RYCR--AVSAIVYVVDAADP-DNLS--ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 83 ~~~~--~~~~ii~v~d~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++. ..+++++|..+... .... .+.+.+.+.+... .-.++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 3333 46888888766532 1222 2334444443321 12579999999998643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=99.98 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=99.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCccceeEEEE---------EeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---------SEDMIPTVGFNMRKV---------TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~~~~~t~~~~~~~~---------~~~~~~~~~~D~~G~~~~~ 78 (184)
+-.+++.++|+..||||||.+++..-.- +....-|.+..+..+ +.+...+.++|.||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3458999999999999999999983221 111122222211111 1234678999999988877
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhHhCc--Cc-
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ----ALTDEMGL--KS- 150 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~--~~- 150 (184)
..+....+-.|.+++|+|+..+..-+... -.+-++ .-...++|+||.|...+..+. +....... ..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 77766667789999999998653111111 111112 125568889999987664432 22222211 11
Q ss_pred ccCcceeEEEeeecCC----CCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNS----TNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~----~~v~~l~~~i~~~l~ 181 (184)
-.....|++++||..| +++.++.+.|.+.+.
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 1123468999999999 788888888877653
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=95.67 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=72.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH---h----HHHHh-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---M----WERYC- 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~----~~~~~- 85 (184)
...++|+++|.+|+||||++|++++.... .....+..........++..+.++||||...... . ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999976542 1112222222333345778999999999654321 1 12222
Q ss_pred -ccCCEEEEEEeCCC--cCcH-HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 86 -RAVSAIVYVVDAAD--PDNL-SISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 -~~~~~ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
...|++++|.++.. .... ..+...+...+... .-.+.|+|+|++|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25799999965542 2211 22334444444321 2257899999999763
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=102.87 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC-------CCccceeEEEEEeCc-EEEEEEecCCchhhHHhHHHH----
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM-------IPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERY---- 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~-------~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~---- 84 (184)
+..++|+|+|.+|+|||||||+|.+-+..+.. .+|..... +.... .++++||.||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 56799999999999999999999752222111 12222222 22222 359999999965554444444
Q ss_pred -hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC-CC--------CCCHHHHHhHhCcC-----
Q 030008 85 -CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK-PG--------ALSKQALTDEMGLK----- 149 (184)
Q Consensus 85 -~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~-~~--------~~~~~~~~~~~~~~----- 149 (184)
+...|.++++.+-.-.++.-.+. ..+.. .++|+++|-||+|. .. .-..+++.+.+...
T Consensus 111 ~~~~yD~fiii~s~rf~~ndv~La---~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTENDVQLA---KEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS--HHHHHHH---HHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCCCchhhHHHH---HHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 45668888877655443222222 22222 37899999999996 11 11122222222111
Q ss_pred -cccCcceeEEEeeecCCC--CHHHHHHHHHHhhhcC
Q 030008 150 -SITDREVCCFMISCKNST--NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 150 -~~~~~~~~~~~~Sa~~~~--~v~~l~~~i~~~l~~~ 183 (184)
...-...++|.+|+.+-. ++..|.+.|.+.|+..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 111233478899988754 5888888888777653
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=114.40 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=89.2
Q ss_pred CChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeC------------------cEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 30 AGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKG------------------NVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 30 sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
++||||+.++.+........- |-.+....+... ...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999986655432211 111111111111 123899999999999888888888899
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHhHh---------
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQALTDEM--------- 146 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~--------- 146 (184)
++++|+|++++-.... ...+. .+.. .++|+++|+||+|+..... .+....++
T Consensus 552 ivlLVVDa~~Gi~~qT-~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQT-IEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHhH-HHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999987421111 11112 2222 3589999999999863211 01111110
Q ss_pred --CcCc----------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 147 --GLKS----------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 147 --~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.... ......+++++||++|+|+++|.+.|...
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1110 01235689999999999999999887644
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=115.82 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--C----------------CCCCccceeEEEEEe----------------C
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--E----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+-.+|+++|+.++|||||+.+|+..... . ....|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34569999999999999999999843210 0 001111211111222 2
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+..+.++||||+..+.......++.+|++++|+|+.++-.... ...+..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5778999999999998888998999999999999987632221 223333332 468999999999986
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=103.93 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=113.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC-----CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE-----DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
-|+..|+-.-|||||+.++.+..... ....|+...+.....++..+.|+|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47889999999999999998654432 3445666667777777789999999999999888888888899999999
Q ss_pred eCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+.++-..... .-.+.+++ .....++|+||+|..++...++..+....... ....+++.+|+.+|+||++|.+
T Consensus 82 ~~deGl~~qtgEhL~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHHHHHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHH
Confidence 99765211111 11122222 23567999999999876555544444443333 4556789999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999887
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-13 Score=93.53 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=107.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~ 89 (184)
.-+|+++|.|.+|||||+..++.. ......++|.......+.+++..+++.|.||.-.- ..+.....+.+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 479999999999999999999843 33456788888899999999999999999994332 233445668899
Q ss_pred EEEEEEeCCCcCcHHHH-HHH-----------------------------------------------------------
Q 030008 90 AIVYVVDAADPDNLSIS-RSE----------------------------------------------------------- 109 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~-~~~----------------------------------------------------------- 109 (184)
.++.|.|++..+....+ ...
T Consensus 142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re 221 (364)
T KOG1486|consen 142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE 221 (364)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence 99999999876533321 111
Q ss_pred ------HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 ------LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 ------~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+++...+ .=++++.|.||+|..+- +++.+--... .-+.+|+....|++.+++.|++.+.
T Consensus 222 D~t~DdfIDvi~gnr-~Y~~ClYvYnKID~vs~---eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 222 DCTVDDFIDVIEGNR-VYIKCLYVYNKIDQVSI---EEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CCChHHHHHHHhccc-eEEEEEEEeeccceecH---HHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 222222111 12578888899987743 3333222221 2577899999999999999999864
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=100.19 Aligned_cols=79 Identities=28% Similarity=0.392 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-----------------EEEEEEecCCchh----
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR---- 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~---- 76 (184)
++|+++|.||+|||||+|++++... ...+++|+......+...+ ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999997664 3346777776665544332 3589999999322
Q ss_pred ---hHHhHHHHhccCCEEEEEEeCC
Q 030008 77 ---FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 ---~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
........++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2334555678999999999995
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=114.59 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=77.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CC-C---------------CCCccceeEEEEEeC----------cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SE-D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~-~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++..+|+++|+.++|||||+++|+.... .. . ...|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4456999999999999999999985221 00 0 001111111122222 567999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+||||+..+.......++.+|++++|+|+.++-... ....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888899999999999998763222 2233333332 358999999999986
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=92.20 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=64.9
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHH
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 140 (184)
..+..++++.|..-..... ..+ ++.++.|+|+.+.+.... ....- ....-++++||+|+.+. ...+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~---~~~~q------i~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR---KGGPG------ITRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh---hhHhH------hhhccEEEEEhhhccccccccHH
Confidence 3567788888832211111 111 577999999987654221 10010 12334899999999753 2333
Q ss_pred HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+.+..... +...+++++||++|+|+++++++|.+++.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333222 34568999999999999999999988764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=100.67 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=84.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc-CC-C----------C------------CCCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT-GG-Y----------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~-~~-~----------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.++-+-+|+-+|.+|||||-.+++- ++ + . ....-++.....++.+.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3455778999999999999998771 00 0 0 001112224556678899999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|++.+..-+-+.+.-+|.++.|+|+..+ +......++.-++..++|++=.+||.|-...
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999999888888889999999999876 2233333444455578999999999997654
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=95.89 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=65.6
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.++++.++||+|..... ...+..+|.++++.+....+ .+......+ ..+|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 35789999999954222 23456678888886544332 232222223 2477899999999975433221
Q ss_pred HHhHh----CcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 142 LTDEM----GLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 142 ~~~~~----~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+ ...... ....+++++||+++.|++++++.|.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 111111 1223689999999999999999998764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-14 Score=101.69 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=89.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCC-------------------CccceeEEEE---------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMI-------------------PTVGFNMRKV--------- 59 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~-------------------~t~~~~~~~~--------- 59 (184)
.+.+.|.+.|+||+|||||+.+|.. .+.. .+++ ...+...+.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3678999999999999999998871 1100 0000 0111122222
Q ss_pred -----------EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 030008 60 -----------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128 (184)
Q Consensus 60 -----------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 128 (184)
..-++++.+++|.|.-+..-.. ..-+|.+++|.-+.-++..+.+...+.++ +-++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 1245789999999854443322 34589999999998777655554444443 348999
Q ss_pred eCCCCCCCC-CHHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 129 NKIDKPGAL-SKQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 129 nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
||+|..... ...++...+.... ...+..|++.+||.++.|++++++.|.+.-
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999964221 1233333333222 233446899999999999999999998753
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=106.09 Aligned_cols=131 Identities=21% Similarity=0.312 Sum_probs=92.7
Q ss_pred CccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 50 PTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 50 ~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
+|.|+....+.. ++..+.++|++|+...+..|..++.++++++||+++++- ..+......+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 455556666777 889999999999999999999999999999999998742 234555677788888777
Q ss_pred CCCCcEEEEeeCCCCCC----CC----------------CHHHHH----hHhCcCcccC---cceeEEEeeecCCCCHHH
Q 030008 119 LSGIPLLVLGNKIDKPG----AL----------------SKQALT----DEMGLKSITD---REVCCFMISCKNSTNIDS 171 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~----~~----------------~~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~ 171 (184)
..+.|+|+++||.|+.. .. ..+... ..+....... ..+.++.++|.+..+++.
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 77899999999999632 11 111111 1111111111 556788999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999987653
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-13 Score=91.43 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC---CCC------------------C-CCCCccceeEEE-----------------E
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG---GYS------------------E-DMIPTVGFNMRK-----------------V 59 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~---~~~------------------~-~~~~t~~~~~~~-----------------~ 59 (184)
-+.|.+.|++|||||+|+-+++.. +++ . ...+..+..... .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 379999999999999999987721 110 0 011111111110 0
Q ss_pred EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCC
Q 030008 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.....++.|++..| .........+ ..+.-++|+|++.++.. ..+ ++.... .-++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~sp~L-~d~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPFSPDL-GDHLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCc--ceecccCcch-hhceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhC
Confidence 11124566767766 1111111111 12477899999887521 111 222222 6799999999987544
Q ss_pred H--HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 139 K--QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 139 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. +.+.+..+.. .+..+++++|+++|+|++++++++...+
T Consensus 160 ~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 4444433322 4556899999999999999999987654
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-13 Score=93.92 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=83.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCccc--------eeEEEE--------------------E
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTVG--------FNMRKV--------------------T 60 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~~--------~~~~~~--------------------~ 60 (184)
.....|+++|+.|||||||++++...-... ....... .....+ .
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 456788999999999999999988431100 0000000 000000 0
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 138 (184)
..+.++.++++.|.-.... .+....+..+.|+|+.+.+... .. ... ....|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~------~~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-YPG------MFKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-hHh------HHhhCCEEEEEHHHccccchhh
Confidence 1134677777777211100 1111235556677776543211 10 011 12467899999999975322
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
..+....... ....++++++||++|.|++++++++.+..
T Consensus 168 ~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 168 VEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2233333221 12456899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=95.21 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=71.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQ 140 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~ 140 (184)
-++++.+++|.|.-+..-.+. .-+|.++++.=+.-++..+.+...+.++ .-|+|+||+|...... ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence 457799999988554443333 3479988888777777666665444443 3489999999543211 22
Q ss_pred HHHhHhCcC----cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 ALTDEMGLK----SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++...+... ....+..|++.+||.+|+|++++++.|.+...
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 233333222 22344568999999999999999999988754
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=96.27 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 120 SGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 120 ~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+-++|+||+|+.+.. +.+.+.+.+. ......+++++||++|+|++++.++|...
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr---~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAR---EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHH---hhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456779999999997532 2333333332 22345689999999999999999999764
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=92.15 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|.++|.|.+||||++..+.+.. .+...++|.......++++..++.+.|.||.-+- ..+.....+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 389999999999999999998532 3345556666666677788899999999994322 3344456678999
Q ss_pred EEEEEeCCCcCcHHHHHHH-------------------------------------------------------------
Q 030008 91 IVYVVDAADPDNLSISRSE------------------------------------------------------------- 109 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~------------------------------------------------------------- 109 (184)
+++|.|+..|-+...+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999876433332111
Q ss_pred -HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 -LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 -~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+...+... ..-+|++.+.||.|.+.- +++.-.+. -...+++||.+++|++++++.+++++.
T Consensus 220 dLIdvVegn-r~yVp~iyvLNkIdsISi---EELdii~~-------iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGN-RIYVPCIYVLNKIDSISI---EELDIIYT-------IPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccC-ceeeeeeeeecccceeee---eccceeee-------ccceeecccccccchHHHHHHHhhcch
Confidence 11111111 123689999999997633 22222222 225889999999999999999998764
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=90.49 Aligned_cols=136 Identities=16% Similarity=0.261 Sum_probs=95.3
Q ss_pred CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcC
Q 030008 47 DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNK 116 (184)
Q Consensus 47 ~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~ 116 (184)
...||.|+....++....-+.++|.+|+...+..|.+++.+...+++++.++. ....+.....+..++.+
T Consensus 182 vRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 182 VRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred eecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence 34567777777777788889999999999999999998888877777666553 23445556667778888
Q ss_pred CCCCCCcEEEEeeCCCCCCCCCH-----------------HHHHhHhC------cCcccCcceeEEEeeecCCCCHHHHH
Q 030008 117 PSLSGIPLLVLGNKIDKPGALSK-----------------QALTDEMG------LKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 117 ~~~~~~~~iiv~nK~D~~~~~~~-----------------~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+...+.++|+..||.|+.++.-. .+..+++- .......-+.-++++|++-+|+.-+|
T Consensus 262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF 341 (359)
T KOG0085|consen 262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF 341 (359)
T ss_pred ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence 88889999999999998753211 01111110 11111222345689999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
..+-+.+.+
T Consensus 342 aaVkDtiLq 350 (359)
T KOG0085|consen 342 AAVKDTILQ 350 (359)
T ss_pred HHHHHHHHH
Confidence 988776544
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=90.43 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----------CCccceeEE--EEEeC--cEEEEEEecCCchhh-------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----------IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----------~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~------- 77 (184)
.++|+|+|..|+|||||||.|++....... .++...... .+... ...+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999975543221 112222222 22222 367899999992210
Q ss_pred -------HHhHHHHh-------------ccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 78 -------RSMWERYC-------------RAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 78 -------~~~~~~~~-------------~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
......++ ...|+++|+++++... +..+. ..+..+- ..+++|.|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 01111111 3358899999987532 22222 2333332 34899999999999865
Q ss_pred CCHHHHHh
Q 030008 137 LSKQALTD 144 (184)
Q Consensus 137 ~~~~~~~~ 144 (184)
.+...+..
T Consensus 158 ~el~~~k~ 165 (281)
T PF00735_consen 158 EELQAFKQ 165 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=89.08 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=103.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc----------CC------CCCC--CCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT----------GG------YSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~----------~~------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|..+|+.+-|||||..+++. .. .+.. ..-|+......+...+.++..+|.||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 46889999999999999999988772 00 1111 122333444445667789999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCCCCCH-----HHHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI-PLLVLGNKIDKPGALSK-----QALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~ 151 (184)
-.....-..+.|+.|+|+++.++.-. ...+.+. + .+.-+. .+++++||+|+.+..+. .++..-+.+..+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiL--l--arqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHIL--L--ARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhh--h--hhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77777777789999999999886421 1222211 1 111245 56777899999874332 233333333444
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~l~ 181 (184)
.....|++.-||+..- -|.+|.+++.++++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 4456678888877632 25666666666554
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=92.21 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=64.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEE------------------eCcEEEEEEecCC-----
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVT------------------KGNVTIKLWDLGG----- 73 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~------------------~~~~~~~~~D~~G----- 73 (184)
.++++++|-||+|||||+|+++.... ...+++|++++..... .....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997664 3568889997766531 1125689999998
Q ss_pred --chhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 74 --QPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 --~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.+...+..-..++++|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34557778888899999999999973
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=83.56 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=44.5
Q ss_pred EEEEEEecCCchh-------------hHHhHHHHhcc-CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 64 VTIKLWDLGGQPR-------------FRSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~D~~G~~~-------------~~~~~~~~~~~-~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.+++++|+||... ...+...++++ .+++++|+|+...-.-.........+ .....++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 5799999999532 12345567774 46899999986532211211222222 224689999999
Q ss_pred CCCCCCCC
Q 030008 130 KIDKPGAL 137 (184)
Q Consensus 130 K~D~~~~~ 137 (184)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99998643
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-12 Score=100.58 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEE----------------EEeCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRK----------------VTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~----------------~~~~~~~~~~~D~~G~~~~~ 78 (184)
..=++|+|+..+|||-|+..+-+....... ...++-++.. .+..-.-+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 356899999999999999988753332111 1111111111 11222348899999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-C-----CH----------
Q 030008 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-L-----SK---------- 139 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-~-----~~---------- 139 (184)
++..+....||.+|+|+|+..+ ++.+.+. + .+..+.|+||++||+|-.-. . ..
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi~-----l---LR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----L---LRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHHH-----H---HHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999765 3322221 2 23367999999999996421 1 00
Q ss_pred --HHHHhHh-------Cc------Cccc----CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 140 --QALTDEM-------GL------KSIT----DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~-------~~------~~~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.++...+ .. ..+. .....++++||.+|+||-+|+-.|++..+
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 1111111 10 0111 12356899999999999999999887643
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-12 Score=102.13 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=83.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CC------------------CCCCCccceeEEEEEeCc-EEEEEEecCCch
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YS------------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~------------------~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~ 75 (184)
.+--+|+++|+..+|||||..+++... .. ....-|+......+.+.+ +.++++||||+-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 455789999999999999999988211 11 011123333444566774 999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.|.....+.++-+|++++|+|+..+-..+ ....|+.. ...++|.++++||+|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQA----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHH----hhcCCCeEEEEECcccccc
Confidence 99999999999999999999998763211 22333333 3357999999999998653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=84.52 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=43.2
Q ss_pred EEEEEEecCCchh----hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 64 VTIKLWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 64 ~~~~~~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
..+.++||||... ....+..+++.+|++++|.++....+-.....+.. .... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~-~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ-MLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH-HHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH-HhcC---CCCeEEEEEcCC
Confidence 3489999999532 23667888899999999999998654443333333 3332 234589999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=88.30 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC----CCC--------------CCCC---CccceeE---EEEE-----eCcEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIK 67 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~ 67 (184)
.-.+.|+++|+.++|||||||+|+++ ... +... .|.++.+ ..+. .-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45799999999999999999999977 322 1122 3333333 1121 2236899
Q ss_pred EEecCCchh--------hHH---------------------hHHHHhc-cCCEEEEEE-eCCC----cCcHHHHH-HHHH
Q 030008 68 LWDLGGQPR--------FRS---------------------MWERYCR-AVSAIVYVV-DAAD----PDNLSISR-SELH 111 (184)
Q Consensus 68 ~~D~~G~~~--------~~~---------------------~~~~~~~-~~~~ii~v~-d~~~----~~~~~~~~-~~~~ 111 (184)
++|++|... ... =+...+. .+++.++|. |.+- ++...... .++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999211 111 0334455 789999888 7751 12232332 3333
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC--CCHHHHHHHH
Q 030008 112 DLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS--TNIDSVIDWL 176 (184)
Q Consensus 112 ~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~l~~~i 176 (184)
.+ +. .++|+++|+||.|-.... ..++...+... .+.+++++|+..- +.+..+++.+
T Consensus 175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~ek----y~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELEEK----YDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHHHH----hCCceEEEEHHHcCHHHHHHHHHHH
Confidence 33 22 479999999999943222 22222222111 1235677776653 2344444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=84.11 Aligned_cols=177 Identities=18% Similarity=0.242 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhc---ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeC----cEEEEEEecCCch
Q 030008 3 LWEAFLNWLRSLF---FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQP 75 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~G~~ 75 (184)
+|..++...+-.. ++..-+|+++|+.++||||||.++.+.. .....+-.++.+..+..+ -..+.+|-.-|..
T Consensus 33 lWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~ 111 (473)
T KOG3905|consen 33 LWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL 111 (473)
T ss_pred HHHHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCch
Confidence 6667776554333 2456799999999999999999997544 345555555555555432 2568899998977
Q ss_pred hhHHhHHHHhccC----CEEEEEEeCCCcCcH-HHHHHH----------------------------HHHHhcC------
Q 030008 76 RFRSMWERYCRAV----SAIVYVVDAADPDNL-SISRSE----------------------------LHDLLNK------ 116 (184)
Q Consensus 76 ~~~~~~~~~~~~~----~~ii~v~d~~~~~~~-~~~~~~----------------------------~~~~~~~------ 116 (184)
-...+....+... ..+|++.|.+++.+. +.+..| |++++.-
T Consensus 112 ~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pg 191 (473)
T KOG3905|consen 112 YHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPG 191 (473)
T ss_pred hhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 6666666554332 457899999988322 222222 1111110
Q ss_pred --------------------------CCCCCCcEEEEeeCCCCCC-----CCCHHH---HHhHhCcCcccCcceeEEEee
Q 030008 117 --------------------------PSLSGIPLLVLGNKIDKPG-----ALSKQA---LTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 117 --------------------------~~~~~~~~iiv~nK~D~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~S 162 (184)
...-++|+++|+||+|... +.-.++ +.+.+...+....+...+.+|
T Consensus 192 sp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTS 271 (473)
T KOG3905|consen 192 SPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTS 271 (473)
T ss_pred CcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEee
Confidence 0112578999999999843 111221 222222233345677899999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
++...|++-+..+|...+
T Consensus 272 vKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 272 VKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccccchHHHHHHHHHHh
Confidence 999999999999998764
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-12 Score=82.10 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC-CccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|+++|+.|+|||+|+.++....+...+. +|.+ +........+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998666654333 3333 2222334557789999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
..+++... |...+... .....|.++++||.|+.+.. ++.... ..+++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 98877654 44444332 33568899999999974321 111111 1136678999999875
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=89.08 Aligned_cols=77 Identities=27% Similarity=0.364 Sum_probs=57.3
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCch-------
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQP------- 75 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~------- 75 (184)
|+++|.||+|||||+|++++.... ..+++|+......+...+ ..+.++|+||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999976653 346677776666554333 259999999932
Q ss_pred hhHHhHHHHhccCCEEEEEEeCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.........++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22334555678899999999985
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=89.94 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhh---cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEe----CcEEEEEEecCC
Q 030008 3 LWEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTK----GNVTIKLWDLGG 73 (184)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~----~~~~~~~~D~~G 73 (184)
+|..++...+.. ....+-+|+|+|..++|||||+.+|.+.. .+.++.+. .+..+.. +...+.+|-..|
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g 82 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDG 82 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCC
Confidence 677778776532 23456799999999999999999986432 23344444 3333322 124689999988
Q ss_pred chhhHHhHHHHhccC----CEEEEEEeCCCcCcHH-HHHHH----------------------------HHHHhc---CC
Q 030008 74 QPRFRSMWERYCRAV----SAIVYVVDAADPDNLS-ISRSE----------------------------LHDLLN---KP 117 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~----~~ii~v~d~~~~~~~~-~~~~~----------------------------~~~~~~---~~ 117 (184)
...+..++...+... -++++|+|.+.|..+- .+..| +..+.. ..
T Consensus 83 ~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~ 162 (472)
T PF05783_consen 83 DPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSS 162 (472)
T ss_pred CcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccc
Confidence 777777766555432 4589999999884332 11111 111110 00
Q ss_pred ------------------------------CCCCCcEEEEeeCCCCCCCCCH-----H---HHHhHhCcCcccCcceeEE
Q 030008 118 ------------------------------SLSGIPLLVLGNKIDKPGALSK-----Q---ALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 118 ------------------------------~~~~~~~iiv~nK~D~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~ 159 (184)
..-++|++||++|+|.....+. + .+...+........++.++
T Consensus 163 ~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~ 242 (472)
T PF05783_consen 163 DSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLI 242 (472)
T ss_pred cccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEE
Confidence 0013799999999997532111 1 1222222233345677799
Q ss_pred EeeecCCCCHHHHHHHHHHhhh
Q 030008 160 MISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.||++...+++.|+.+|...+.
T Consensus 243 yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 243 YTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred EeeccccccHHHHHHHHHHHhc
Confidence 9999999999999999887764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=85.67 Aligned_cols=146 Identities=21% Similarity=0.318 Sum_probs=96.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEE-eCcEEEEEEecCCchhhHHh-----HHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRSM-----WERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~-----~~~~~~~~~ 89 (184)
.-||+++|..||||||+-..++.+-. ......|++....+++ .++..+.+||.+|++.+... -...+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 35899999999999998776663332 2345566666666665 35588999999999866433 334678899
Q ss_pred EEEEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc---ccCcceeEEEeee
Q 030008 90 AIVYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS---ITDREVCCFMISC 163 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa 163 (184)
++++|||+...+-..++ ...+..++... +...+.+..+|+|+.+....+.+-+...... ....++.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999877533333 23334444332 4567888899999987665544433332211 1233466788887
Q ss_pred cCC
Q 030008 164 KNS 166 (184)
Q Consensus 164 ~~~ 166 (184)
.+-
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 664
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=89.40 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++-+++.++|+.++|||.+++++.++.+.+....+.. +....+ ......+.+.|.+-. ......... ..||+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 5668999999999999999999999888764433333 222222 233456677777653 222222222 6789999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-----LSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++||.+++.+++.+...+...... ...|+++|++|+|+.+. ..+.++..+++.. +.+.+|.....
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~~~ 570 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKTLS 570 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCCCC
Confidence 999999999999888766654333 67999999999998542 2346677776654 34555655322
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
. .++|..|..+.
T Consensus 571 s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 571 S-NELFIKLATMA 582 (625)
T ss_pred C-chHHHHHHHhh
Confidence 2 78888887654
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=91.47 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=72.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC-CCC--CCCccceeEEEEEeCcEEEEEEecCCchhh----------HHhHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY-SED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------RSMWERY 84 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 84 (184)
..++|+++|.+|+||||++|++++... ... ...|...........+..+.++||||.... ...+..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 457999999999999999999997653 222 123333322223345678999999995432 1112223
Q ss_pred hc--cCCEEEEEEeCCCcCcH-H--HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 CR--AVSAIVYVVDAADPDNL-S--ISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ~~--~~~~ii~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+. .+|++++|..+...... . .....+..++... .-...|||+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 33 47999999887533221 1 2233344444321 1258899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=88.16 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=71.3
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCccc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSIT 152 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 152 (184)
+++..+...++.++|.+++|+|+.+++ ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 556666667899999999999999887 88888888765432 469999999999996432221 2222221
Q ss_pred CcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 153 DREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+.+++++||++|.|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 23457999999999999999988754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=90.09 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc----------------ceeEEE--E------------------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV----------------GFNMRK--V------------------ 59 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~----------------~~~~~~--~------------------ 59 (184)
.+.++.|+..|+.+.|||||...|..+...+....|. ...... +
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4678999999999999999999887544332222111 111111 1
Q ss_pred ---EeCcEEEEEEecCCchhhHHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 60 ---TKGNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 60 ---~~~~~~~~~~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
...+.-+.++||.|++.+.....+-+ ++.|..++++.++++-+ ... .+-+........|+|+|+||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~t---kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMT---KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhh---hHhhhhhhhhcCCEEEEEEecccC
Confidence 11224588999999999977655543 67899999999998732 111 222222222469999999999998
Q ss_pred CCCCHHHHHhHhCc-------C-----------------cccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 135 GALSKQALTDEMGL-------K-----------------SITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 135 ~~~~~~~~~~~~~~-------~-----------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+....+...++... . .....-.|+|.+|+.+|+|++-|.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 65443222222211 0 0011236899999999999987665544
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-11 Score=84.84 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=89.8
Q ss_pred ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC----------cHHHHHHHHHHHhcCCCCC
Q 030008 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+....++.+.++|.++|.+||...+..|...+....++++|+.++.-+ .+......+..+.+.....
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 455556667778889999999999999999999999999999999987431 2222333445555544446
Q ss_pred CCcEEEEeeCCCCCCCCC------HHHHHhHhC----------------------------------cCcccCcceeEEE
Q 030008 121 GIPLLVLGNKIDKPGALS------KQALTDEMG----------------------------------LKSITDREVCCFM 160 (184)
Q Consensus 121 ~~~~iiv~nK~D~~~~~~------~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 160 (184)
.+.+|+..||.|+..+.- .+.+-.++. ...--.+.+.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 789999999999753210 000000000 0001123466789
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.+-++|..+|....+.+.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999987776654
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-11 Score=92.81 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=78.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc---------------ceeE----EE-----EEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV---------------GFNM----RK-----VTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~---------------~~~~----~~-----~~~~~~~~~~~D~~G 73 (184)
.-.+|+++|+-.+|||+|+.-|..+..++....+. ++.. .. .....+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34689999999999999999888554432211110 0110 01 123447799999999
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+-.+.......++.+|++++++|+.++-.+.. ...+.... ....|+.+|+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHHH
Confidence 99999999999999999999999998743322 22233332 2469999999999963
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=78.96 Aligned_cols=141 Identities=14% Similarity=0.226 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcccc--eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCcccee--EEEEEeCc--EEEEEE
Q 030008 5 EAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFN--MRKVTKGN--VTIKLW 69 (184)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~--~~~~~~~~--~~~~~~ 69 (184)
..+..+++...++. +++|+++|..|.|||||+|+++.....+. ...|.++. ...+..++ .+++++
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltvi 109 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVI 109 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEe
Confidence 67777777777665 58999999999999999999885333221 11233322 12233344 568899
Q ss_pred ecCCchh---h-----------HHhHHH------------Hh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCC
Q 030008 70 DLGGQPR---F-----------RSMWER------------YC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG 121 (184)
Q Consensus 70 D~~G~~~---~-----------~~~~~~------------~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
||||... . ..+... .+ ...++++|.+.++..+ +..+.-.+..-+. .-
T Consensus 110 DTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt----~v 184 (336)
T KOG1547|consen 110 DTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT----EV 184 (336)
T ss_pred cCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh----hh
Confidence 9999211 1 111111 12 3357788888887542 3333222221111 34
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHhHhCcCc
Q 030008 122 IPLLVLGNKIDKPGALSKQALTDEMGLKS 150 (184)
Q Consensus 122 ~~~iiv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
+.++-|+-|+|...-.++.++.+.+....
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~~el 213 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIRKEL 213 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHHHHH
Confidence 78899999999887666666666655433
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=84.99 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=94.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-EEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
....|.++|-.|||||||+++++..... ...+.|.++........+ ..+.+.||-|.- .|..... ..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 4468999999999999999999954432 235567666555444333 457788999932 2222222 34
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC----cEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI----PLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
..+|.++.|.|+++|+........+ ..++...-... ..+=|=||+|..+.....+ .+ .-+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC---Ccccc
Confidence 6789999999999996443333322 23333222222 3456678888754322111 11 15789
Q ss_pred eecCCCCHHHHHHHHHHhhh
Q 030008 162 SCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~ 181 (184)
||.+|+|++++.+.+-..+.
T Consensus 322 saltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccCccHHHHHHHHHHHhh
Confidence 99999999999998877653
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=80.89 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=72.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCccceeEEE--EEeCc--EEEEEEecCCchhh------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED----------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRF------ 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~------ 77 (184)
-.++|+++|+.|+|||||+|+|+++..... ..+++.+.... +..++ ..++++||||....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999997633221 22333333332 22333 67889999992211
Q ss_pred --------HHhHHHHh--------------ccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 78 --------RSMWERYC--------------RAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 78 --------~~~~~~~~--------------~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..+...++ ...++++|.+.++... +..+.- .+..+. ..+.+|.|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence 11222222 3458899999876542 333322 222222 358899999999998
Q ss_pred CCCCHHHHH
Q 030008 135 GALSKQALT 143 (184)
Q Consensus 135 ~~~~~~~~~ 143 (184)
...+...+.
T Consensus 176 T~~El~~~K 184 (373)
T COG5019 176 TDDELAEFK 184 (373)
T ss_pred CHHHHHHHH
Confidence 655544333
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-10 Score=77.84 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchhh---HHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---RSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~~~~~~~~~~~ii~ 93 (184)
.+|+++|...|||||+-.-..++..+.. ..+|..+...++...-.++.+||.|||..+ ..-....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 5699999999999998776665444322 123333444445555678999999998655 2335677899999999
Q ss_pred EEeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-H-------HHHhHhCcCcccCcceeEEEeee
Q 030008 94 VVDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-Q-------ALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 94 v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|+|+.+. +.+..+...+.. .+.-.+++.+=+.+.|+|..++... + .....+...........++.+|-
T Consensus 108 vIDaQddy~eala~L~~~v~r--aykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDDYMEALARLHMTVER--AYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHHHHHHHHHHHHHhhh--eeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999865 222222222221 2234467888999999997653221 1 11112222222334567888998
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
.+-. +=+.|..+++.|.
T Consensus 186 yDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred cchH-HHHHHHHHHHHHh
Confidence 8764 6666666665543
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-10 Score=75.31 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
++.+..+..+++|++++|+|+.++..... ..+...... .++|+++|+||+|+.+......+. .+. ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCC
Confidence 35667778888999999999987643222 112222221 358999999999986432222211 111 11234
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++++||+++.|++++++.|.+.++.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHhh
Confidence 68999999999999999999887653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-09 Score=79.28 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCccceeEEEE--EeCc--EEEEEEecCCchhh--------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFNMRKV--TKGN--VTIKLWDLGGQPRF-------- 77 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~~~~~--~~~~--~~~~~~D~~G~~~~-------- 77 (184)
.++++++|+.|.|||||||+|+....... +..|........ ..++ ..++++||||....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999986644322 222333333332 2222 56889999992211
Q ss_pred ------HHhHHHHh-------------ccCCEEEEEEeCCCcCcHHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 78 ------RSMWERYC-------------RAVSAIVYVVDAADPDNLSISRSE-LHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 78 ------~~~~~~~~-------------~~~~~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
.+....++ ...++++|.+.++..- +..+.-. ...+ . ..+++|-|+.|+|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCCHH
Confidence 12222222 2568899999886531 2222211 2222 1 468999999999987654
Q ss_pred CH
Q 030008 138 SK 139 (184)
Q Consensus 138 ~~ 139 (184)
+.
T Consensus 175 El 176 (366)
T KOG2655|consen 175 EL 176 (366)
T ss_pred HH
Confidence 43
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-10 Score=78.78 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=64.3
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH-HHhHh---CcCc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA-LTDEM---GLKS 150 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~---~~~~ 150 (184)
..+..++..+++++|++++|+|+.++... ... .+... ..++|+++|+||+|+.+.....+ ..... ....
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~---~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS--LIP---RLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc--cch---hHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhh
Confidence 33577888899999999999999876411 111 11111 13589999999999975433221 11111 0000
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
......+++++||++++|++++++.|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1111125899999999999999999988764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=85.57 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=87.3
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCccceeE------------------------------------
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNM------------------------------------ 56 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~~t~~~~~------------------------------------ 56 (184)
...+...+|++.|..++||||++|+++.++. +....+++.+..
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3446789999999999999999999994432 111222211100
Q ss_pred --------EEEEeC-------cEEEEEEecCCc---hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC
Q 030008 57 --------RKVTKG-------NVTIKLWDLGGQ---PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS 118 (184)
Q Consensus 57 --------~~~~~~-------~~~~~~~D~~G~---~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 118 (184)
-.+-.. ..++.++|.||. ......+..+..++|++|+|.++.+.-+ .... .++....
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--~sek---~Ff~~vs 258 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--LSEK---QFFHKVS 258 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--HHHH---HHHHHhh
Confidence 000000 126899999994 3445666677889999999998877632 2222 2233333
Q ss_pred CCCCcEEEEeeCCCCCCCCC--HHHHHh---HhCcCcccCcceeEEEeeecC
Q 030008 119 LSGIPLLVLGNKIDKPGALS--KQALTD---EMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+..+.|+.||+|...... .+.+.. .++...++...-.+|++||+.
T Consensus 259 ~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 259 EEKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred ccCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 34667788889999864322 122222 233333333444688899554
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-10 Score=83.39 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=79.7
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT 143 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 143 (184)
.++.|+|.||++-.....-.-..-.|++++++..+.++......+.+..+-- ..-+.++++-||+|+..+....+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhhhhHHHHHHHH
Confidence 4689999999887766655555566889999998876544444444433211 1237889999999998665543333
Q ss_pred hHhC-c-CcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 144 DEMG-L-KSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 144 ~~~~-~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+. . ......++|++++||.-+.|++-+.++|+..++
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 2222 1 112234679999999999999999999998765
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=73.28 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=36.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
..++|+++|.+|+|||||+|++.+.... ..+..|..... +.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 5688999999999999999999865432 12222333222 222 23488999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=78.56 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=101.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc----------CC------CCCCCCCccceeEEEE--EeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT----------GG------YSEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~----------~~------~~~~~~~t~~~~~~~~--~~~~~~~~~~D~~G~~~~~ 78 (184)
+++++|.-+|+..-|||||-.++.. .+ .+.....-+.++..++ .....++--.|.||+-.|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 5789999999999999999888772 01 1111222222344444 4455788999999999987
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-----HHHHhHhCcCcccC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-----QALTDEMGLKSITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 153 (184)
.....-..+.|++|+|+.++++. .....+.+.-. ++. .-..+++.+||.|..+..+. -++.+.+.+..+..
T Consensus 132 KNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777777889999999999875 22333333221 121 12567888899999854432 23333444445556
Q ss_pred cceeEEEeeec---CCC----C---HHHHHHHHHHhh
Q 030008 154 REVCCFMISCK---NST----N---IDSVIDWLVKHS 180 (184)
Q Consensus 154 ~~~~~~~~Sa~---~~~----~---v~~l~~~i~~~l 180 (184)
...|++.-||+ .|. | |..|++.+-+++
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 66788876654 442 2 555566655544
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-10 Score=87.93 Aligned_cols=160 Identities=21% Similarity=0.376 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|++|+|..++|||+|+++++.+.+.....|.-+..... +..+...+.+.|.+|.. ...+....|++|+|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEE
Confidence 67999999999999999999999888877666655533332 33455667788888732 223445689999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
...+.++++.+..+...+..+.....+|++.++++.-.............-.........+.++++++..|-+++.+|..
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999998887777766655566899999988644222111111111111222334457999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+...+..
T Consensus 184 ~~~k~i~ 190 (749)
T KOG0705|consen 184 VAQKIVQ 190 (749)
T ss_pred HHHHHHH
Confidence 8876543
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=78.31 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=93.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC-ccc-eeEEEEEeCcEEEEEEecCCc----------hhhHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~~~ 84 (184)
....+++++|..|+|||||+|-+++......... +.+ ........-+..+.++|.||. ..+......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 4568999999999999999999987554333222 222 222222233457999999991 2334455555
Q ss_pred hccC---CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhHhC-c-CcccC
Q 030008 85 CRAV---SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS------KQALTDEMG-L-KSITD 153 (184)
Q Consensus 85 ~~~~---~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~-~-~~~~~ 153 (184)
+.+. -.+++.+|+.-+ +........+++.. .++|..+|+||+|...... ...+...+. . .....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 5332 335666777644 22222222333333 5799999999999864322 011111011 0 11122
Q ss_pred cceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 154 REVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...|++.+|+.++.|++.|+-.|.+.
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccCCceeeecccccCceeeeeehhhh
Confidence 33467889999999999987666543
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=73.88 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=37.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
..++++++|.||+|||||+|++.+.... ..+..|.......+ +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcC
Confidence 4589999999999999999999975542 22333443333322 23689999999
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=79.98 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCchh---
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY-S--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR--- 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~--- 76 (184)
++++++|.||+|||||++++++... . ..+++|..+....+...+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997765 3 346677776665544322 4689999999432
Q ss_pred ----hHHhHHHHhccCCEEEEEEeCCC
Q 030008 77 ----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....-..++++|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 34566778899999999999963
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=86.28 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=74.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCC------------CCCccceeEE----EEEeCcEEEEEEecCCchhhHHh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SED------------MIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~------------~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
--+++++.+..-|||||...+..... ++. -..+.+++.. ..-.+++.++++|+||+..|...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 35789999999999999999883221 100 0112222211 12247789999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcC---cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
......-+|++++++|+..+- +..-+++.|. .+...++|+||+|
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 999999999999999998762 2222222222 3567789999999
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=80.35 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=62.5
Q ss_pred HHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 81 WERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
....+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+......+...+. ..+.+++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 344578999999999998775 3334455555442 24699999999999974433333333332 2234689
Q ss_pred EeeecCCCCHHHHHHHHHH
Q 030008 160 MISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~ 178 (184)
++||.++.|++++++.+..
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 154 FISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEcCCCCCHHHHhhhhcc
Confidence 9999999999999988764
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=73.98 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC-----------CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
+.+++++.... +...+++++|.+|+|||||+|++.+.... ..+.+|.......+ +. .+.++||||
T Consensus 114 ~eL~~~l~~~l-~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~~~DtPG 189 (190)
T cd01855 114 EELINAIKKLA-KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN-GKKLYDTPG 189 (190)
T ss_pred HHHHHHHHHHh-hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC-CCEEEeCcC
Confidence 45555555443 35678999999999999999999964321 12223333332223 21 589999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=81.72 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCC-----------------------CccceeE-------EE-------EEe
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMI-----------------------PTVGFNM-------RK-------VTK 61 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------~t~~~~~-------~~-------~~~ 61 (184)
+++|+++|...+|||||+.-+.++....... .++++.. .. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5899999999999999998877443221111 1111110 00 011
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhcc--CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
...-++++|.+|+.+|.......+.. .+.+++|+++..+.+... .+.+ .+... -++|++++++|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHL-gl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHL-GLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHH-HHHHH---hCCCeEEEEEeeccccchhH
Confidence 22458999999999998766554433 588999999987632111 1111 12211 36999999999999876443
Q ss_pred HHHHhHhCc-------------------------CcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 140 QALTDEMGL-------------------------KSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 140 ~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+...+++.. ......-.|+|.+|+.+|+|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 322222211 1112334689999999999988765544
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-09 Score=71.35 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
..+..+|++++|+|+.++... ....+...+... ..++|+++|+||+|+.+......+...+... .....+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEee
Confidence 346789999999999886321 112233333221 2358999999999997543333334444322 122257899
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|+++.|++++.+.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-08 Score=76.15 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEEEEEecCCch-------------hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 64 VTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
-..+++|.||.- ..-.+...++.+.+++|+|+--...+ .-.....+++.+....+...|+|.||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 458899999932 23456778999999999999654433 23344455666666678899999999
Q ss_pred CCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCC---CCHHHHHHH
Q 030008 131 IDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNS---TNIDSVIDW 175 (184)
Q Consensus 131 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~l~~~ 175 (184)
+|+.+. ..+..+.+++.-..+.-....||.+-.=.| +.|+++.++
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~Y 538 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREY 538 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHH
Confidence 999764 346777777765555444445666543332 245554443
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-09 Score=77.08 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=67.6
Q ss_pred cCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. .........+..+|++++|+|+..+.+... ..+...+ .++|+++|+||+|+.+......+.+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence 46654 335567778899999999999987643222 2223333 25799999999999643222333223321
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.+++.+||+++.|++++.+.+.+.+.+
T Consensus 76 ----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ----KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999999887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=70.43 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred cCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+. +........++++|++++|+|+.++..... ..+.... .++|+++|+||+|+.+.....++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence 45643 445667778899999999999987643221 1122221 247999999999996432222222222111
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
...++.+||+++.|++++.+.+...+
T Consensus 75 -----~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 -----GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 23578999999999999999998875
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=82.43 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=101.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc---------------------------------CCCCCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT---------------------------------GGYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~---------------------------------~~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+.+++++++|+..+||||+-.+++. +...+....|++.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 5679999999999999999887661 1112334456666666677778
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCC--CC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPG--AL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~--~~ 137 (184)
.++++.|+||+..+-.....-+.++|+.++|+++...+ .|+.- ...-...+ .........|+++||+|-.. +.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~L-akt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHH-HHhhccceEEEEEEeccCCccCcc
Confidence 89999999999999777777778899999999997654 12111 00001111 11113467899999999753 21
Q ss_pred C--HHHHHhH----hCc-CcccCcceeEEEeeecCCCCHHHHH
Q 030008 138 S--KQALTDE----MGL-KSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 138 ~--~~~~~~~----~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
. .++.... +.. ...-.....++++|..+|.++++..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 1122221 111 1112245679999999999988754
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=74.01 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=77.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEe---------------------------------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~--------------------------------- 61 (184)
...-|+++|+=..||||+|+-++.+.++. .+.||.......+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 44679999999999999999999888764 234444422211100
Q ss_pred -----C---cEEEEEEecCCchhh-----------HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC
Q 030008 62 -----G---NVTIKLWDLGGQPRF-----------RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122 (184)
Q Consensus 62 -----~---~~~~~~~D~~G~~~~-----------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
. --.++++||||.-.- ....+=+...+|.|+++||+..-+--..+...+..+.. ..-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccc
Confidence 0 024899999994322 33345567889999999999876543444444444433 345
Q ss_pred cEEEEeeCCCCCCC
Q 030008 123 PLLVLGNKIDKPGA 136 (184)
Q Consensus 123 ~~iiv~nK~D~~~~ 136 (184)
.+-+|.||+|.++.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67788999999854
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=69.66 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
+..++++++|.+|+|||||+|++.+.... ..+..|..... +..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec-CCEEEEECCCC
Confidence 45579999999999999999999976542 12223333322 2222 45889999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=75.99 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 82 ERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..........+ ...+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34578899999999999887 77777776665433 368999999999997542111111111 113457899
Q ss_pred eeecCCCCHHHHHHHHHH
Q 030008 161 ISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-09 Score=68.49 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
-+++++|.+|+|||||+|++.+..... ....|.... .+..+. .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeCC-CEEEEECCCc
Confidence 389999999999999999999766531 122222222 233322 5899999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=74.74 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=64.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEe-----------------CcEEEEEEecCC----
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTK-----------------GNVTIKLWDLGG---- 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~-----------------~~~~~~~~D~~G---- 73 (184)
.++++++++|.||+|||||+|++++..... .+++|+++....+.. -...++++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 367899999999999999999999766543 466788876655321 235699999998
Q ss_pred ---chhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 74 ---QPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.+...+..-+.++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33456667778899999999999864
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=75.90 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=63.9
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...++|.+++|+++....++..+..|+.... ..++|.++|+||+|+.+............. ....+.+++++||
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA 190 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSS 190 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeC
Confidence 3567899999999987778888888776442 246899999999999754322222111111 1122357999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 030008 164 KNSTNIDSVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
+++.|++++++.|...
T Consensus 191 ~tg~GideL~~~L~~k 206 (347)
T PRK12288 191 HTGEGLEELEAALTGR 206 (347)
T ss_pred CCCcCHHHHHHHHhhC
Confidence 9999999999988653
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=78.17 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=64.6
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCccc
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSIT 152 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~ 152 (184)
.+.+......+.+.++++++|+|+.+... .....+.... ...|+++|+||+|+.+... .+......... .+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 56788888888889999999999976531 1222233332 2579999999999975432 22222211100 11
Q ss_pred Ccce---eEEEeeecCCCCHHHHHHHHHHh
Q 030008 153 DREV---CCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 153 ~~~~---~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
..++ .++++||++|.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1111 48899999999999999999764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=67.92 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=53.8
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELH-DLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+... .++. ..... .++|+++|+||+|+.+.....++...+... ....++++||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999988754332 2222 22222 468999999999996432222322222211 12358999999999
Q ss_pred CHHHHHHHHHHh
Q 030008 168 NIDSVIDWLVKH 179 (184)
Q Consensus 168 ~v~~l~~~i~~~ 179 (184)
|++++.+.+...
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=67.53 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=39.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
....+++++|.+|+|||||+|++.+... ...+..|.......+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4568999999999999999999997542 2334455554443332 3589999999
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=77.32 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
+++++.++.. .+..++.++|.+|+|||||+|++++... +..+.+|.+.....+ +..+.++||||...
T Consensus 142 ~eL~~~l~~~--~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 142 DELLDKIKKA--RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIIN 216 (360)
T ss_pred HHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCC
Confidence 4555555443 2346999999999999999999996432 223334444332222 12367999999543
Q ss_pred hHHhHH--------HHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 77 FRSMWE--------RYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 77 ~~~~~~--------~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
...... ... +......++++....-.+..+.. +.........+.+.+++.+..+...
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~ 283 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTK 283 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeec
Confidence 322111 111 23455677777654322222210 1111123466778888888765433
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=75.18 Aligned_cols=85 Identities=22% Similarity=0.179 Sum_probs=58.3
Q ss_pred HhccCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.+.++|.+++|+|+.+++..... ..++..+. . .++|+++|+||+|+.+... ..+....+ ...+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEE
Confidence 45889999999999887655444 44444432 2 4689999999999963211 11222222 1123578999
Q ss_pred eecCCCCHHHHHHHHH
Q 030008 162 SCKNSTNIDSVIDWLV 177 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~ 177 (184)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998764
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-08 Score=74.51 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=53.4
Q ss_pred cEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+.++.++||+|..... ...... ..+.+.+++|+|+..++.... ....+... -..--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhc----CCCCEEEEeeecCCCC
Confidence 4679999999965322 112222 235688999999976542222 12222211 1234677999998643
Q ss_pred CCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 137 LSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
... -.+.... +.|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 322 2222222 33677776 799998874
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=74.87 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=67.8
Q ss_pred ecCCchh-hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc
Q 030008 70 DLGGQPR-FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148 (184)
Q Consensus 70 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
-.|||.. ........+..+|++++|+|+..+.+... ..+..... ++|+++|+||+|+.+....+.+...+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 4577653 35567778899999999999987643222 22333332 5899999999999643222233222211
Q ss_pred CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 149 KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.+++.+||.++.|++++.+.+...+.+
T Consensus 79 -----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 -----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred -----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12468999999999999999998877653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=66.23 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=37.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G 73 (184)
...+++++|.+|+||||++|++.++.. ....++.+.... .+...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999986442 233444443322 1112234689999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=73.28 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
..++++++|.||+|||||+|++.+... ...+..|..... +... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC-CCEEEEECCCc
Confidence 468999999999999999999996553 222333444332 2222 25899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-07 Score=65.61 Aligned_cols=84 Identities=20% Similarity=0.127 Sum_probs=55.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC---CCCCccceeEEEEEe---CcEEEEEEecCCchhh------HHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE---DMIPTVGFNMRKVTK---GNVTIKLWDLGGQPRF------RSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~---~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~------~~~~~ 82 (184)
.+-.-|+++|++++|||||+|++++. .+.. ...+|.+.-...... .+..+.++||||.... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567889999999999999999987 5532 245566654443333 3578999999995322 11111
Q ss_pred HHhc--cCCEEEEEEeCCCc
Q 030008 83 RYCR--AVSAIVYVVDAADP 100 (184)
Q Consensus 83 ~~~~--~~~~ii~v~d~~~~ 100 (184)
..+. -+++++|..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 2222 37888888888654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=72.52 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=38.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-C--CCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-E--DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
+..++++++|.||+|||||+|++.+.... . .+..|..... +.. +..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEe-CCcEEEEECCCc
Confidence 35689999999999999999999975542 2 2233333322 222 235889999995
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=75.31 Aligned_cols=153 Identities=21% Similarity=0.226 Sum_probs=89.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCcccee----------------------EEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFN----------------------MRK 58 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~----------------------~~~ 58 (184)
+.+|+++|+..+|||||+.-+.++... ....++++.. +.+
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 589999999999999999876633221 1111122211 111
Q ss_pred EEe-CcEEEEEEecCCchhhHHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 59 VTK-GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 59 ~~~-~~~~~~~~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.. ...-++|+|.+|+++|......-+ +-.|...+++-++-+- .....+-+.....-.+|+++|+||+|.-.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-----iGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-----IGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-----eeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 111 124588999999999977654443 3357888888877541 11111112222223689999999999854
Q ss_pred CCCHHH----HHhHhCcC---------------------cccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 136 ALSKQA----LTDEMGLK---------------------SITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 136 ~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.+-.++ +.+.++.. +....-+|+|.+|..+|+|++-+...+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 332222 11222221 111234789999999999988765443
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-09 Score=81.23 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=78.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
++.-+|.+.-+-.|||||+-.+++.-... +...-|+........+.+.++.++||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 34568899999999999999987721110 0111122223334566788999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.....+.++-.|++++++|+..+- .......+....+ .++|.|..+||+|-..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 9888999999999999999987652 1112222333322 4799999999999643
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=73.95 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=44.4
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
..+++++.. .+...++.++|-||+||||+||+|.+... +..+..|.+.....++. .+.++||||.-
T Consensus 119 ~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 119 KIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred HHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 334444332 24568999999999999999999997665 22334444444444433 38999999943
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-08 Score=72.18 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCchhhHH----hHHH---Hh-----ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWER---YC-----RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~---~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.++++.++||||...... .... .+ ..++..++|+|++.+. ..+.+ ...+... -.+.-+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEEEE
Confidence 457899999999643211 1111 11 2467789999998653 22222 2333221 134478899
Q ss_pred CCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 130 KIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|...... .-.+.... +.|+..++ +|++++++-
T Consensus 268 KlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 999653322 22222222 33677777 888887763
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=68.63 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCchhhHHhHH-------HHhc-----cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRSMWE-------RYCR-----AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~-------~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.++++.++||||......... .... .++.+++|+|++... ..+. ....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEEEE
Confidence 457899999999654322211 1222 378899999997542 2222 223333221 24578899
Q ss_pred CCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 130 KIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|...... .-.+.... +.|+.+++ +|++++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 999864322 22333332 23677776 888887763
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=58.45 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=76.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecC-C--------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLG-G-------------------- 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~-G-------------------- 73 (184)
+..++|++.|+||+||||++.++...-. .....--++....++.++ .-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 4578999999999999999988762111 111122223333333322 346666666 2
Q ss_pred -chhh----HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc
Q 030008 74 -QPRF----RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148 (184)
Q Consensus 74 -~~~~----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
.+.+ .......++.+|++ ++|=-.+ ++.....+.+.+.......+|+|.++.+.+-. -+.+.+..
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik~ 151 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIKK 151 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhhh
Confidence 0111 12233445556764 4554333 22222223333333333478888888776531 12222221
Q ss_pred CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 149 KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
. +..+++ .+.+|=+.++..|.+.|...
T Consensus 152 ~-----~~v~v~---lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 152 L-----GGVYVF---LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred c-----CCEEEE---EccchhhHHHHHHHHHhccC
Confidence 1 112333 56677779999988887653
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.1e-09 Score=78.11 Aligned_cols=115 Identities=23% Similarity=0.162 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--------CC------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
--+|+++.+..+||||.-.+++.- .. .+...-|+......++++++.+.++||||+..++
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 358999999999999999988721 11 0112223333444577889999999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
-..+++++-.|+++.|||++.+-.-+.+. +..+....++|-+..+||+|+.....
T Consensus 117 leverclrvldgavav~dasagve~qtlt-----vwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLT-----VWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceee-----eehhccccCCchhhhhhhhhhhhhhh
Confidence 89999999999999999998763222222 23344556899999999999875433
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=66.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++++|+.|+|||||+|+|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999965
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-08 Score=73.34 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCC--------CCCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGG--------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+.+++.+... .+..++.++|.+|+|||||||++.... .+..+.+|.+.....+.. ...++||||..
T Consensus 148 ~eL~~~I~~~--~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 148 DELLEAIEKY--REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred HHHHHHHHHh--cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 4555555444 244689999999999999999998542 122334455443333322 25799999963
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.7e-08 Score=63.83 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+..+|++++|+|+.++.+... ..+..++.... .++|+++|+||+|+.+.....++.+.+.. .+.++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEE
Confidence 4556788999999999988754331 12222222211 46899999999999643322233333222 1246899
Q ss_pred eeecCCCC
Q 030008 161 ISCKNSTN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||.++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=72.65 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCCC------------ccceeEEE-E----------------E
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMIP------------TVGFNMRK-V----------------T 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~~------------t~~~~~~~-~----------------~ 60 (184)
...|+++|.+||||||++..+.. .+.. .+... ..+..+.. . .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998761 1111 01100 01111111 0 0
Q ss_pred eCcEEEEEEecCCchhhHHh----HHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSM----WERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~----~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..++++.++||||....... .... ..+++-+++|+|+.-++.-......+.. . ..+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence 12578999999996544222 1121 2346789999999866433222222221 1 23557889999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=71.80 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=82.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.+=|+++|+||+||||||+.+.+.-.........++. ..+......+++...|. -.+......+-+|.+++.+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPi-TvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI-TVVSGKTRRITFLECPS---DLHQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCce-EEeecceeEEEEEeChH---HHHHHHhHHHhhheeEEEec
Confidence 456788899999999999999988433222211111211 22334557799999993 23334456677999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCc--ccCcceeEEEeeecC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKS--ITDREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~ 165 (184)
.+-+ |+.-.-.+..++..+. -..++-|+|..|+..... .....+.++-.. ...+++.+|-+|...
T Consensus 143 gnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 143 GNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9876 2222222333333321 234677889999975432 333333332211 124455677666443
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-08 Score=68.96 Aligned_cols=132 Identities=13% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccc--eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC----ccceeEEE--EEeC--cEEEEEEecCC
Q 030008 4 WEAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVVATGGYSEDMIP----TVGFNMRK--VTKG--NVTIKLWDLGG 73 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~----t~~~~~~~--~~~~--~~~~~~~D~~G 73 (184)
|..+.++|-+....+ .++|+.+|..|.||||||.++++..+...+.+ ++...... +... ..+++++||.|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 345566655554444 58999999999999999999999888766543 33322222 2222 26789999998
Q ss_pred c-------hhh-------HHhHHHH-------------h--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcE
Q 030008 74 Q-------PRF-------RSMWERY-------------C--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124 (184)
Q Consensus 74 ~-------~~~-------~~~~~~~-------------~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (184)
. +.+ ..+...| + ...++++|.|.++.. ++..+.-....-+ ..++.+
T Consensus 105 fGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~L----dskVNI 179 (406)
T KOG3859|consen 105 FGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKL----DSKVNI 179 (406)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHH----hhhhhh
Confidence 1 111 1111111 2 234778888888754 3444332222212 235788
Q ss_pred EEEeeCCCCCCCCCHH
Q 030008 125 LVLGNKIDKPGALSKQ 140 (184)
Q Consensus 125 iiv~nK~D~~~~~~~~ 140 (184)
|-|+-|+|.++..+..
T Consensus 180 IPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 180 IPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHhhhhhHHHHH
Confidence 8899999988654443
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=71.52 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC-CC---------CCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS-ED---------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~-~~---------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.++++|.+|+|||||+|+|...... .. .-+|.......+..+ ..++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999954321 11 112323333333222 359999995544
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.6e-07 Score=69.63 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=58.4
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccC
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITD 153 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~ 153 (184)
+.+...........+.+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... .++....... ..+.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EAKE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HHHh
Confidence 344444444433334899999998753 12223333332 2579999999999975322 2222211110 0111
Q ss_pred cc---eeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 154 RE---VCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 154 ~~---~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11 2488999999999999999997764
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.7e-07 Score=60.73 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
+++.|..|||||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998854
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-07 Score=61.73 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=36.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
.++++.++||+|..... ..++..+|.++++....-.+...-.. .......-++++||.|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---------~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---------AGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---------hhHhhhcCEEEEeCCC
Confidence 35789999999854322 34777889998888776332111111 1112344588899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-07 Score=69.21 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999954
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=64.75 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC------CC----CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY------SE----DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~------~~----~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.++++|++|+|||||+|++..... +. ...+|.......+ .+ ..++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 678999999999999999995422 11 1123444443334 22 37999999543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=75.04 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=64.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccce-eEEEEE-eCcEEEEEEecCCc----h----hhHHhHHHHh-
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGF-NMRKVT-KGNVTIKLWDLGGQ----P----RFRSMWERYC- 85 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~-~~~~~~-~~~~~~~~~D~~G~----~----~~~~~~~~~~- 85 (184)
=.+|+|++||||||++++- +..++-.. ..+.+. ....++ .-..+-+++||+|. + .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 3589999999999999876 22332110 011110 001111 11124679999992 1 1223344432
Q ss_pred --------ccCCEEEEEEeCCCcC--cH-------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 86 --------RAVSAIVYVVDAADPD--NL-------SISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 --------~~~~~ii~v~d~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+-.+++|+++|+.+-- +. ..+...+.++... .....|+.+|+||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3369999999997531 11 1233444444332 335799999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=64.80 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.++|.+++|+++..+-+...+..++..... .+++.++|+||+|+.+. .++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744343344444443322 36777999999999754 22222222211 234578999999
Q ss_pred CCCCHHHHHHHHH
Q 030008 165 NSTNIDSVIDWLV 177 (184)
Q Consensus 165 ~~~~v~~l~~~i~ 177 (184)
++.|+++|...+.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-07 Score=63.41 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=36.8
Q ss_pred CcEEEEEEecCCchhhHH----hHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++.++||||...... .+..+. ...+-+++|+|++....-......+.+.+ + +-=++.||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------c-CceEEEEeecCCC
Confidence 346799999999544321 122221 24678999999986542221111122221 1 2246699999864
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=59.87 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=38.9
Q ss_pred cEEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+.++.++|+||..... .....+. ...+.+++|+|+..... .......+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568999999964321 1122221 24799999999965432 223333333222 2 35677799998643
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=63.44 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=63.21 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CC----CCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG------YS----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~------~~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
..+++|+.|+|||||+|++.... .+ ...-+|.......+..+ =.++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 67899999999999999998421 11 11222333333333222 368999995554
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=68.40 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
.++|++||-||+||||+||+|.+++. +..+..|..+....++- .+-++|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCC
Confidence 58999999999999999999998764 34555565555555543 478999999
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=59.03 Aligned_cols=93 Identities=17% Similarity=0.048 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhc--------cCCEEEEEEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+..+..++.+.|.-.-......+.. ..|.++-|+|+.+-..... ..+.+..-+.. .-++|+||+|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 3467888899885544444333322 2377999999986532222 33333333332 3388999999
Q ss_pred CCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 133 KPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+....+.+...... .++.++++.+|.
T Consensus 157 lv~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 9866543333333332 345567887776
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-07 Score=62.26 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=39.4
Q ss_pred cEEEEEEecCCchhhHHh------HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~------~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
..+..++.+.|....... ... .-..+.++.|+|+.+-.........+.+.+... -++|+||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 457888999984333322 111 233588999999966432333334444444443 3888999999755
Q ss_pred C
Q 030008 137 L 137 (184)
Q Consensus 137 ~ 137 (184)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=60.91 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEEEEEecCCchhhHHhHHHHhc--------cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+..++++.|.-........+.. ..+.++.|+|+.+......-......-+. -.-++|+||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 56788899996655554444321 23779999999754211111111111121 23388899999985
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 3
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-06 Score=64.16 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=37.7
Q ss_pred EEEEEEecCCchhhHHh----HHH--HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM----WER--YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~----~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.++.++||||....... ... ....++.+++|+|+.... ........+.... ...-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 47999999996544221 111 134578899999997653 2222233332111 12356789999754
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-06 Score=64.95 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.++++.++||||..... ...... .-..+-+++|+|+..++ ........+.... + ..-+|.||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 34679999999954321 111111 12467789999987543 2223333332211 1 2356679999643
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.2e-06 Score=64.85 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred CcEEEEEEecCCchhhHH----hHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++++.++||||...... ....+ .-+.+.+++|+|+..++ ........+.... + ..=+|.||.|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCc
Confidence 346799999999543321 11111 23468889999997553 2333333332221 1 235668999964
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=61.45 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC------CCCCCC--c---------------cceeEEEE-----------EeCc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY------SEDMIP--T---------------VGFNMRKV-----------TKGN 63 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~------~~~~~~--t---------------~~~~~~~~-----------~~~~ 63 (184)
+.-.++++|++|+||||++.+|...-. .....+ + .+...... ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 355788999999999999998873210 000000 0 01111111 1235
Q ss_pred EEEEEEecCCchhhHHh----HHHH--hccCCEEEEEEeCCCc-CcHHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM----WERY--CRAVSAIVYVVDAADP-DNLSISRSELHDLLNKPSLSGI-PLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~----~~~~--~~~~~~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 135 (184)
.++.++||+|....... .... .....-.++|++++.. +........+..........-. .-=+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 68999999996543222 2221 1223456899999764 3333343444433222111101 2346679999864
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-06 Score=57.31 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=40.5
Q ss_pred EEEEEEecCCchhh------HHhHHHHhcc--C-CEEEEEEeCCCc-CcH---HHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 64 VTIKLWDLGGQPRF------RSMWERYCRA--V-SAIVYVVDAADP-DNL---SISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~D~~G~~~~------~~~~~~~~~~--~-~~ii~v~d~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
-.+.++|.|||-+. ...+..++++ . -++++++|..-. ++. +....-+..... -.+|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 46899999997543 2223333333 2 346777777532 111 111122222222 25899999999
Q ss_pred CCCCCCCCHHH
Q 030008 131 IDKPGALSKQA 141 (184)
Q Consensus 131 ~D~~~~~~~~~ 141 (184)
+|+......++
T Consensus 174 MDLlk~~~k~~ 184 (273)
T KOG1534|consen 174 MDLLKDKNKKE 184 (273)
T ss_pred HHHhhhhhHHH
Confidence 99986644333
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=63.16 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...++++|++|+|||||+|++.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=62.56 Aligned_cols=111 Identities=17% Similarity=0.122 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCCC------------ccceeEEE----------E---E-eCc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMIP------------TVGFNMRK----------V---T-KGN 63 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~~------------t~~~~~~~----------~---~-~~~ 63 (184)
...|+++|++||||||++..|.. ++.. .+... ..+..... + . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35889999999999999998862 1110 00000 01111110 0 1 114
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++.++||+|..... ..+...+ ...+.+++|+|++-.. ......+..+-. -..-=+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 689999999954321 1122222 2356788999986432 222233333311 1233567899998653
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EE---------------------------------EEeCcE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RK---------------------------------VTKGNV 64 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~---------------------------------~~~~~~ 64 (184)
.-.|+++|+.|+||||-+-.|...-........+++.. .. ....+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66788999999999999887653222111122222111 00 012456
Q ss_pred EEEEEecCCchhhHH----hHHHHhccC--CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRS----MWERYCRAV--SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~----~~~~~~~~~--~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++||.|...++. ....++..+ .-+.+|++++.. ...+...+..+. ..+.. =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~----~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS----LFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc----cCCcc-eeEEEcccccC
Confidence 899999999655433 333443332 446788888754 223333333331 12222 35589999753
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-05 Score=61.38 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=60.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC------CCCC-----CCCC------------ccceeEEEE-----------EeC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG------GYSE-----DMIP------------TVGFNMRKV-----------TKG 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~------~~~~-----~~~~------------t~~~~~~~~-----------~~~ 62 (184)
++.-.++++|+.|+||||++..|... .... .... ..+...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999887631 0100 0000 011111111 123
Q ss_pred cEEEEEEecCCchhhHHh----HHHHh-ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSM----WERYC-RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~----~~~~~-~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+++.++||+|....... ..... ......++|++.... ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999995433211 11110 112345777887643 3333333333321 145678999999854
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=65.70 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
--++++|+.|+||||.+..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 467899999999999999887
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=61.07 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.--++++|+.|+||||++..|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3468899999999999999887
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00044 Score=53.61 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--------CCCC-----CC------------CCccceeEEEE-----------EeC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--------GYSE-----DM------------IPTVGFNMRKV-----------TKG 62 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--------~~~~-----~~------------~~t~~~~~~~~-----------~~~ 62 (184)
...|+++|+.|+||||.+..+... +... +. ..-.+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 357889999999999999877621 1100 00 00011111110 124
Q ss_pred cEEEEEEecCCchhhH----HhHHHHhcc--CC-EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERYCRA--VS-AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~~~--~~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.++.++||+|..... ......+.. .+ -.++|+|++.. ...+...+..+.. --+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 5789999999954322 122223322 23 57899999876 2333333333311 123356789999864
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=55.53 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.+-|+++|+..+||||||.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 456899999999999999999998
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-05 Score=60.56 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-----CC-----CCCC------------CccceeEEE----------EEeCcEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-----YS-----EDMI------------PTVGFNMRK----------VTKGNVTIK 67 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-----~~-----~~~~------------~t~~~~~~~----------~~~~~~~~~ 67 (184)
..++++|++||||||++.+|.... .. .+.. ...+..... +...+.++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886311 00 0000 000111111 112356899
Q ss_pred EEecCCchhh-HHh---HHHHhc-----cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 68 LWDLGGQPRF-RSM---WERYCR-----AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 68 ~~D~~G~~~~-~~~---~~~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
++||||.... ... +..++. ...-.++|+|++... .........+ .. --+-=+|+||.|....
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 9999996422 222 222222 134578999998653 2222222222 11 1233567899998643
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.4e-06 Score=62.87 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=41.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
++..++++|+|-||+||||+||+|...... ....|++......+. -+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 467899999999999999999999976663 333343332222232 234699999999
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=61.46 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=40.8
Q ss_pred CcEEEEEEecCCchhhHHhHHH------HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWER------YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..+++.++||+|........-. ..-++|=+++|+|+.-++.-.+....+.+-+.. . =+|+||.|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------t-GvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------T-GVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------c-eEEEEcccCC
Confidence 3468999999996554332221 234568899999998876555555444443321 1 2456777754
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.4e-05 Score=59.02 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999997763
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=57.89 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCccceeE-EEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTVGFNM-RKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~~~~~-~~~~~~~~~~~~~D~~G~ 74 (184)
+.++++.|+|-||+|||||||++.+....- .+.-|..... ..+ .....+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri-~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRI-SHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEe-ccCCceEEecCCCc
Confidence 578999999999999999999877433211 1122222211 112 22345889999993
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|.+|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=55.10 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=37.6
Q ss_pred EEEEEEecC-CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 64 VTIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~-G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++.++||- |.+.+.. ...+++|.++.|+|.+.. ++.. ...+..+..... -+++.+|.||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHHhC--CceEEEEEeeccch
Confidence 345555552 3333322 234678999999999854 2222 233333333221 38999999999965
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0002 Score=56.27 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCchhhH----HhHHHHhc---cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR----SMWERYCR---AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~----~~~~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
...++.++||||..... ..+..++. ...-+++|++++.. ...+...+..+ .. .. +--++.||.|..
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccc
Confidence 34689999999964432 22333333 23466788888654 22333333333 11 11 225789999985
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 371 ~~ 372 (424)
T PRK05703 371 SS 372 (424)
T ss_pred cc
Confidence 43
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999843
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00025 Score=43.43 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=44.8
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh-HHHHhccCCEEEEEEeCCCc
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~ 100 (184)
+++.|.+|+||||+...+...-.. .+.....++ ++.++|+++....... .......++.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999998877632111 111112222 7999999985543321 13455678999999988754
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.7e-05 Score=54.67 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC----CCC-----CC------------CCCccceeEEE-------------E-EeCc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG----GYS-----ED------------MIPTVGFNMRK-------------V-TKGN 63 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~----~~~-----~~------------~~~t~~~~~~~-------------~-~~~~ 63 (184)
.-+++++|++|+||||++..+... ... .. +....++.... + ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999998876521 110 00 00011111111 0 1124
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++.++||||..... ..+...+ .+.+-+++|+|++... ......+..+.. -.+-=+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 689999999965321 1122222 2356789999987431 122333333311 1334667899998653
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=60.63 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=53.7
Q ss_pred HHHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchh--hHH
Q 030008 6 AFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPR--FRS 79 (184)
Q Consensus 6 ~~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--~~~ 79 (184)
++++++.++- -++++.|+++|-||+||||+||+|-..+...- +..|.--.+..+ ...+-++|.||.-- ...
T Consensus 293 ~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~ds 369 (572)
T KOG2423|consen 293 QLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDS 369 (572)
T ss_pred HHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCc
Confidence 4555555554 46889999999999999999999986665321 111111111111 23588999999321 122
Q ss_pred hHHHHhccCCEEEEEEeCCCcC
Q 030008 80 MWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
.....+ .+++-|-.+.+++
T Consensus 370 et~ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 370 ETDIVL---KGVVRVENVKNPE 388 (572)
T ss_pred hHHHHh---hceeeeeecCCHH
Confidence 233332 3455666666553
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.4e-05 Score=56.18 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=74.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc----CCCCC----------------------CCCC----ccc-----eeEEEE---
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT----GGYSE----------------------DMIP----TVG-----FNMRKV--- 59 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~----~~~~~----------------------~~~~----t~~-----~~~~~~--- 59 (184)
+.+-++++|-.|+||||-|-.+.. ++.+. ...+ ..+ ..+.-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 468899999999999999987761 11100 0000 001 111111
Q ss_pred EeCcEEEEEEecCCchhhHH-------hHHHHhccCCE-----EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030008 60 TKGNVTIKLWDLGGQPRFRS-------MWERYCRAVSA-----IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~~~-----ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv 127 (184)
...++++.++||+|.-.... -+.+.++..+. +++++|++-++.--.-...+.+... +. =++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~------l~-GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG------LD-GII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC------Cc-eEE
Confidence 13567899999999433321 12333333333 8889999877533333344444432 22 456
Q ss_pred eeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 128 GNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 128 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+||.|-.... ..-.+...+.. |+.++. -|+++++|.
T Consensus 291 lTKlDgtAKGG~il~I~~~l~~--------PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYELGI--------PIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEecccCCCcceeeeHHHHhCC--------CEEEEe--CCCChhhcc
Confidence 8999954321 22333333332 566654 466676663
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=58.79 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=32.0
Q ss_pred EeCcEEEEEEecCCchhh-HHhHHH-----HhccCCEEEEEEeCCCcCcHHHHHHHH
Q 030008 60 TKGNVTIKLWDLGGQPRF-RSMWER-----YCRAVSAIVYVVDAADPDNLSISRSEL 110 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~-~~~~~~-----~~~~~~~ii~v~d~~~~~~~~~~~~~~ 110 (184)
..++.++.++||.|...- .++... -.-+.|-+++|.|++-++.-......+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 346788999999994432 222221 123469999999999776444433333
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.1e-05 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999876
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00071 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..-.+++.|++|+|||++++.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999854
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.6e-05 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999843
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.8e-05 Score=63.90 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEE-eCcEEEEEEecCCc--------hhhHHhHHHH---
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVT-KGNVTIKLWDLGGQ--------PRFRSMWERY--- 84 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~G~--------~~~~~~~~~~--- 84 (184)
=-+|+|++|+||||++..-- ..++-. .....+......+ .-.-+-+++||.|. +.....|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 34799999999999886432 211100 0000011112221 12235689999982 1223334433
Q ss_pred ------hccCCEEEEEEeCCCcC---c------HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 ------CRAVSAIVYVVDAADPD---N------LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ------~~~~~~ii~v~d~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+-.++||+.+|+.+-- . ...+...+.++.. ......|+++++||.|+.+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccc
Confidence 24459999999997431 1 1113333444432 3335689999999999985
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=51.94 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
|+.+.....++.......=-|++.|++||||||++++++..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 34444455554444334445899999999999999998743
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=53.03 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=33.2
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|+.++.+-.. ..+..... ....++|+++|+||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 78999999988632211 22222211 111358999999999997654444444444
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.8e-05 Score=49.53 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
|
... |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00068 Score=54.30 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+.+..|+.++.. ...-.+++.|++|+||||+++.+.+.
T Consensus 23 ~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 23 KEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566677766642 22557899999999999999999854
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+.++|..|||||||+.++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4678999999999999999983
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=53.02 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=56.4
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH--HHhHhCcCcccCcceeEEEe
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA--LTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (184)
+.+.|-+++++.+.+|+ +...+..++... .. .++.-++|+||+|+.+...... ....+ ...+.+.+.+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~~ 147 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLFV 147 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEEe
Confidence 34467788888888876 333333333332 22 4676677899999986655442 22222 2345578999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
|+++++|++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998887543
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.3e-05 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+|+|++|||||||..++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998884
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.6e-05 Score=58.96 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCC------------CC------CCCCccceeEEE-----------
Q 030008 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGY------------SE------DMIPTVGFNMRK----------- 58 (184)
Q Consensus 10 ~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~------------~~------~~~~t~~~~~~~----------- 58 (184)
.++.++. ++--+..++.+..-|||||-..+..... .+ ...-|+......
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 3444443 2335788999999999999998873210 00 000111111111
Q ss_pred -----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 59 -----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 59 -----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
-+..+.-+.++|.||+-.+.+.....++-.|++++|+|+-++--.+. ...+...+.. .-+| ++++||.|.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E---RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKP-VLVMNKMDR 162 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh---hccc-eEEeehhhH
Confidence 01234678999999999999999999999999999999987632211 1122222222 2345 567999995
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00062 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..++++.|+.|+||||++.++++
T Consensus 51 pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHH
Confidence 678999999999999999999984
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.9e-05 Score=52.29 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+|+|++|||||||..++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999873
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00039 Score=54.37 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH----cCCCC----------CC---------------CCCccceeEEE---------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA----TGGYS----------ED---------------MIPTVGFNMRK--------- 58 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~----~~~~~----------~~---------------~~~t~~~~~~~--------- 58 (184)
+..+.|+++|-.|+||||=+-.+. .++++ .. ....++....-
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 477999999999999999888765 12211 00 01111110000
Q ss_pred ------EEeCcEEEEEEecCCchhhHH----hHHHH--hccCCEEEEEEeCCC-cCcHHHHHHHHHHHhcCCCCCCCcEE
Q 030008 59 ------VTKGNVTIKLWDLGGQPRFRS----MWERY--CRAVSAIVYVVDAAD-PDNLSISRSELHDLLNKPSLSGIPLL 125 (184)
Q Consensus 59 ------~~~~~~~~~~~D~~G~~~~~~----~~~~~--~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (184)
-+.++.++.++||+|...... .+..+ ....|.+++|-.+-- .+++..+...=..+... ..+..---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCccccce
Confidence 124568899999999543322 22222 356799999987753 34555554433444333 22233335
Q ss_pred EEeeCCCCCCCCCHHHHHhH
Q 030008 126 VLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 126 iv~nK~D~~~~~~~~~~~~~ 145 (184)
++++|+|.++...-..+...
T Consensus 535 ~~ltk~dtv~d~vg~~~~m~ 554 (587)
T KOG0781|consen 535 ILLTKFDTVDDKVGAAVSMV 554 (587)
T ss_pred EEEEeccchhhHHHHHhhhe
Confidence 67899998755433333333
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.3e-05 Score=42.34 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
..++.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999876
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=52.18 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|+++|.|||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999886
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=43.05 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=57.7
Q ss_pred EEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN 102 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 102 (184)
.-|.+|+||||+--.+...-.. ...++.-.... ....-.+++.++|+|+.. .......+..+|.++++.+.+.. +
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~-s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPT-S 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChh-H
Confidence 4567899999996655421100 00000000000 000011679999999743 33345678889999999988743 3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 103 LSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
+......+..+.... ...++.+|+|+++.
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 443333333332211 34577899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.4e-05 Score=50.24 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|+++|+|||||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
|
... |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.9e-05 Score=40.76 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=25.1
Q ss_pred ccCCEEEEEEeCCCcCc--HHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 86 RAVSAIVYVVDAADPDN--LSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+-.++++|++|++..+. .+.-...+.++... ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 44689999999987653 33333334444222 23799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.8e-05 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+|+++|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999854
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00057 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
++|.|++|+||||++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999998884
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00088 Score=49.79 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhh----------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------------------- 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------------------- 77 (184)
..++++|++|.|||+++++|....... ..+. .....+..+.+|.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHH
Confidence 679999999999999999999544321 1110 11235677777752211
Q ss_pred --HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 78 --RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 78 --~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
.......++...+=+++||=-+. -+...-...+..+..-.+.-.+|++.|||+-
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 22234566777888888886421 1122222222222222444679999998764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.5e-05 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|++.|++||||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.-+++++|.+|+|||||+|.+.+.
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHh
Confidence 3458899999999999999999853
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=52.22 Aligned_cols=72 Identities=19% Similarity=0.050 Sum_probs=36.6
Q ss_pred cEEEEEEecCCchhh------HHhHHHHhccCCEE---EEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 63 NVTIKLWDLGGQPRF------RSMWERYCRAVSAI---VYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~------~~~~~~~~~~~~~i---i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
..++.++|.|||-++ ...+-+.+.+.+.= +-.+|+.-........ ..+..+.. -..-..|-+=|+.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t-Ml~melphVNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT-MLHMELPHVNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH-HHhhcccchhhhhHhH
Confidence 357899999997543 22233344445553 4445543222222221 11111111 1113477888899999
Q ss_pred CCC
Q 030008 133 KPG 135 (184)
Q Consensus 133 ~~~ 135 (184)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 864
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=53.89 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=67.6
Q ss_pred EEEecCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH
Q 030008 67 KLWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 67 ~~~D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 145 (184)
.+-+.||+. .+.......+..+|+++.|+|+.++.+-.. ..+..+.. ..|.++|+||+|+.+.....++.+.
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~ 85 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKY 85 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHH
Confidence 344557754 556778888899999999999999864322 22334433 3555999999999977666666666
Q ss_pred hCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 146 MGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.... +...+.+++..+.+...+..
T Consensus 86 ~~~~~----~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 86 FKKEE----GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHhcC----CCccEEEEeecccCccchHH
Confidence 65542 33567888888887776664
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.5e-05 Score=50.20 Aligned_cols=51 Identities=18% Similarity=0.467 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
.+.++|.+|||||||+.++... ....+.....+......+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~------l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA------LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5789999999999999999842 12222333444444433433 777744443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=42.00 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=53.7
Q ss_pred EEE-cCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC
Q 030008 23 SLI-GLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 23 ~i~-G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
+++ +..|+||||+...+...-......++.-.... . ....++.++|+|+.... .....+..+|.++++.+....
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-~-~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~- 77 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-L-QFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP- 77 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-C-CCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH-
Confidence 344 44689999987665421111000011000000 0 01127999999985433 344566788999999987654
Q ss_pred cHHHHHHHHHHHhcCCCCC-CCcEEEEeeC
Q 030008 102 NLSISRSELHDLLNKPSLS-GIPLLVLGNK 130 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK 130 (184)
+..........+... ... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 344444444433222 222 3467777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=41.32 Aligned_cols=78 Identities=12% Similarity=0.022 Sum_probs=45.6
Q ss_pred EEEEc-CCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 22 LSLIG-LQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 22 v~i~G-~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
|++.| ..|+||||+...+...-.. . +.....++. ..+++.++|+|+..... ....+..+|.++++.+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH
Confidence 56666 5599999997765521110 0 111111111 11679999999865333 3366677999999998864
Q ss_pred cCcHHHHHH
Q 030008 100 PDNLSISRS 108 (184)
Q Consensus 100 ~~~~~~~~~ 108 (184)
. +......
T Consensus 74 ~-s~~~~~~ 81 (104)
T cd02042 74 L-DLDGLEK 81 (104)
T ss_pred H-HHHHHHH
Confidence 3 3444433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=6e-05 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0008 Score=44.15 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.+.+.+. ++..-.|++.|+.|+|||||++.+...
T Consensus 9 ~~l~~~l~~~-l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 9 DKFGKAFAKP-LDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHh-CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555433 255567999999999999999999864
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00025 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..+.+.+..+. ..+..-|++.|++|||||||++.+.+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 16 HKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444444443 24578899999999999999998874
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.+...|+|.|++|||||||.+.+..
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999874
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=52.95 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhcccce-e-EEEEEcCCCCChHHHHHHHHc
Q 030008 3 LWEAFLNWLRSLFFKQE-M-ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~-~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.+..|++....... - =+++.||+||||||.++.+..
T Consensus 27 Kv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 27 KVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 35678889987654332 3 356799999999999998884
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00024 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..-.|++.|++||||||+++++..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 5678999999999999999999984
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.=-|+++|++|||||||+|.+.+
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 33479999999999999998884
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=44.18 Aligned_cols=19 Identities=37% Similarity=0.795 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
+.++|..|||||||+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred EEEEecCCCChhhHHHHHH
Confidence 5799999999999999986
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00014 Score=50.30 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+++...+........-.+++.|++|+|||+|++++.
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344444432223445678999999999999999877
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00029 Score=50.57 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.+.+++-+......+-|+|.|.+|||||||.+++.
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4556666654445678999999999999999999887
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=50.06 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEec-CCc---------------hhhH---H
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDL-GGQ---------------PRFR---S 79 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~-~G~---------------~~~~---~ 79 (184)
+|++.|++|+||||+++++...-. ....+.-|+....+..++ .-|.+.|. .|. .+|. .
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e 79 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLE 79 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHH
Confidence 689999999999999999873211 112233333333333222 33555565 220 0110 1
Q ss_pred --------hHHHHhccCCEEEEEEeCCC-cCc-HHHHHHHHHHHhcCCCCCCCcEEEEeeCC-CCCCCCCHHHHHhHhCc
Q 030008 80 --------MWERYCRAVSAIVYVVDAAD-PDN-LSISRSELHDLLNKPSLSGIPLLVLGNKI-DKPGALSKQALTDEMGL 148 (184)
Q Consensus 80 --------~~~~~~~~~~~ii~v~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~-D~~~~~~~~~~~~~~~~ 148 (184)
.....+..++ ++++|=-. .|. -..+.+.+..++. ..+|++.++-+. +. ...+++.....
T Consensus 80 ~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~~~---~~l~~i~~~~~- 149 (168)
T PF03266_consen 80 SFEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRSDN---PFLEEIKRRPD- 149 (168)
T ss_dssp HHHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS--S---CCHHHHHTTTT-
T ss_pred HHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCCCc---HHHHHHHhCCC-
Confidence 1122224455 57777532 221 2234455555655 468899888777 32 23444444433
Q ss_pred CcccCcceeEEEeeecCCC
Q 030008 149 KSITDREVCCFMISCKNST 167 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~ 167 (184)
..++.++..+.+
T Consensus 150 -------~~i~~vt~~NRd 161 (168)
T PF03266_consen 150 -------VKIFEVTEENRD 161 (168)
T ss_dssp -------SEEEE--TTTCC
T ss_pred -------cEEEEeChhHHh
Confidence 246666544443
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00016 Score=50.46 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.++.. .+..-.++++|++||||||+++.+++
T Consensus 13 ~~~~~l~~~-v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLA-VEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHH-HhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433 35567899999999999999999984
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00011 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++|+|+.|||||||++.+.+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEEccCCCccccceeeecc
Confidence 34556789999999999999999873
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=51.53 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=29.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+++-.+++.++... +...+|+++|+|||||+|+..++.
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~i~l~G~PGsGKgT~a~~La 52 (244)
T PLN02674 15 DLMTELLRRMKCSS-KPDKRLILIGPPGSGKGTQSPIIK 52 (244)
T ss_pred HHHHHHHHHHhhcc-ccCceEEEECCCCCCHHHHHHHHH
Confidence 45556666664333 446889999999999999999887
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00012 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=-|+++|+.|||||||+|-+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344467999999999999999886
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+...+|++.|+.|||||||++++++.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcc
Confidence 457789999999999999999999854
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=50.10 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.....+|++.|.+|||||||+++++..
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 356789999999999999999999843
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|++.|++|+|||++++.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999844
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0002 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++++|+|.+|||||+|+..++.
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456779999999999999999988874
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00022 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++..-|+++|++|||||||.+.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999985443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00033 Score=53.44 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcc--c-ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFF--K-QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~--~-~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++..|++.... . +..=++++|+||+|||||.+++.+
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566677766553 2 234468999999999999999873
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999884
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00041 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+.+.+... .-.+|++.|+||+|||||..++...
T Consensus 6 k~~~~~l~~~---~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNN---GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcC---CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5555554332 3358999999999999999988753
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++.-.++++|+.|||||||++.+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566789999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+++|.|||||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00035 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.=.++++|++|||||||++.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4555789999999999999998873
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00023 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998744
|
... |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00021 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++. .++++|+.|||||||++.+.+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 3457 899999999999999999984
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=50.30 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=25.2
Q ss_pred HHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 9 ~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++|+... ....+|++.|.+|||||||+++++..
T Consensus 135 ~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 135 SVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444333 35568999999999999999999853
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00024 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999853
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
.+|+++|+|||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00029 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+++.--|+++|++|||||||++.+.+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 355667999999999999999999854
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00026 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..-.++++|++|||||||++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 344568999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=40.60 Aligned_cols=65 Identities=11% Similarity=-0.111 Sum_probs=41.6
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++|+|+.... .....+..+|.++++++.... ++......+..+... ......+|+|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 7999999985433 234556789999999988754 344444333333221 2245678999998754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK10646 ADP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0077 Score=40.50 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.+.+.+.. +..--|++-|+-|+|||||.+.+...
T Consensus 15 ~~l~~~la~~l-~~g~vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 15 LDLGARVAKAC-DGATVIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred HHHHHHHHHhC-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34555554433 44556899999999999999999853
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00032 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|.|+|+.|||||||+..+.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998873
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444568999999999999999984
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00027 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++||||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999743
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00026 Score=49.20 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
..|+++|++||||||+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999887
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00027 Score=49.76 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|++|||||||.+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00035 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-|++.|.+|||||||.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36688999999999999999974
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0044 Score=49.71 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
|+-...++.++.....+.=-|++.|+.||||||++++++..
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 44445555555444333335899999999999999988743
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-+|+++|.+|+|||||++.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999984
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=47.44 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=38.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc------eeEEEEEeCcEEEEEEecCCchhhHHhHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG------FNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 83 (184)
.+.=.++++|+.|||||||.+.+.+-.-+....-+.. -.........+.+.+-|-.+.-.-+.....
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~ 103 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR 103 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence 4566789999999999999999984222211000000 000012355678888888774444333333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 184 | ||||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-70 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 3e-68 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 2e-67 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-28 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 3e-27 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 4e-27 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 5e-26 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-25 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-25 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-25 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 3e-25 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 6e-25 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-24 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-24 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 2e-24 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 2e-24 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 3e-24 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 4e-24 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 7e-24 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-23 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 2e-23 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 2e-23 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 3e-23 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-23 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 8e-23 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 9e-23 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 2e-22 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 3e-22 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 5e-22 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 6e-22 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 8e-22 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-21 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 2e-21 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 3e-21 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 4e-21 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 7e-21 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 9e-21 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 9e-21 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 9e-21 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 1e-20 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-20 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 3e-20 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-19 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-19 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-19 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 1e-18 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 2e-18 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-17 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-17 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 4e-17 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 4e-17 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-16 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-15 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 1e-12 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 1e-12 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 6e-12 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 6e-12 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 6e-12 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 6e-12 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 7e-12 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 7e-12 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 7e-12 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 1e-11 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-11 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 2e-11 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 8e-11 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 9e-11 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 9e-11 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 2e-10 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 8e-10 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 9e-10 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 1e-09 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 2e-09 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 2e-09 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 3e-09 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 3e-09 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 3e-09 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 3e-09 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 4e-09 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 4e-09 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 4e-09 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 5e-09 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 5e-09 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 5e-09 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 5e-09 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 5e-09 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 6e-09 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 7e-09 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 7e-09 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 9e-09 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 9e-09 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 1e-08 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 1e-08 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-08 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 2e-08 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 2e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 2e-08 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 2e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 2e-08 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 3e-08 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 4e-08 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 4e-08 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 4e-08 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 5e-08 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 5e-08 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 7e-08 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 9e-08 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 1e-07 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 1e-07 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 3e-07 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 4e-07 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 4e-07 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 5e-07 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 5e-07 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 7e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 7e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 8e-07 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 8e-07 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 8e-07 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 1e-06 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 2e-06 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 2e-06 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 5e-06 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 5e-06 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 6e-06 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 6e-06 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 7e-06 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 7e-06 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 8e-06 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 8e-06 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 9e-06 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 1e-05 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-05 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 3e-05 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 3e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 4e-05 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 6e-05 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 8e-05 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 1e-04 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 1e-04 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 1e-04 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-04 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-04 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 1e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 1e-04 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 2e-04 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 2e-04 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 2e-04 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 2e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 2e-04 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 2e-04 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 2e-04 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 3e-04 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 3e-04 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 3e-04 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 3e-04 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 4e-04 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 4e-04 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 4e-04 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 4e-04 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 5e-04 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 5e-04 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 6e-04 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 6e-04 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 6e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-04 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 8e-04 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 8e-04 |
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 2e-84
Identities = 115/186 (61%), Positives = 146/186 (78%), Gaps = 3/186 (1%)
Query: 1 MGLWEAFLN---WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR 57
MG + L K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMR
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP 117
K+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 118 SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
L GIP+LVLGNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL+
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 178 KHSKSK 183
+HSKS+
Sbjct: 181 QHSKSR 186
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 2e-77
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 2/185 (1%)
Query: 1 MGLWEAFL-NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV 59
MG W A L L L +++ + ++GL NAGKTS++ + G +PTVG N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL 61
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSL 119
N++ ++WDLGGQ R W Y A++YVVD+ D D + +++ EL+ LL++ L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 120 SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
LL+ NK D P A S+ + +++G+ SI +R S K + +DWLV+
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181
Query: 180 SKSKS 184
+ +
Sbjct: 182 LREQG 186
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-76
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
R W Y A++YVVD+ D D + IS+SEL +L + L L+V NK D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A++ + + +GL ++ DR+ F S T +D ++WLV+ KS+
Sbjct: 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 7e-72
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 1 MGLWEAFLNWLRSL-----FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN 55
M W+ F W R + + + +L +GL NAGKT+L++++ + + PT
Sbjct: 1 MAGWDIF-GWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT 58
Query: 56 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN 115
++ GN+ +DLGG + R +W+ Y V+ IV++VDAADP+ +R EL L N
Sbjct: 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118
Query: 116 KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-------DREVCCFMISCKNSTN 168
L +P ++LGNKID P A+S+ L +GL + T R V FM S
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178
Query: 169 IDSVIDWLVKH 179
WL ++
Sbjct: 179 YLEAFQWLSQY 189
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 9e-72
Identities = 49/188 (26%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 1 MGLWEAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGG-YSEDMIPTVGFNMR 57
MG + L +E+ + +GL N+GKT+++N + S++++PT+GF++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP 117
K +++ ++D+ GQ R+R++WE Y + AI++V+D++D + +++ EL LLN P
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 118 SLSG--IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175
+ IP+L NK+D A++ ++ + L++I D+ + +DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180
Query: 176 LVKHSKSK 183
L ++
Sbjct: 181 LQDQIQTV 188
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 7e-69
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 4/184 (2%)
Query: 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV 59
MG F + L+ +E+ + ++GL AGKT+++ + G PT+GFN+ +
Sbjct: 1 MGNI--FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ-IGEVVTTKPTIGFNVETL 57
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSL 119
+ N+ + +WDLGGQ R W Y +A+++VVD+ D D +S + ELH +L + L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117
Query: 120 SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
LLV NK D+PGALS ++ E+ L + DR S I +DWL+
Sbjct: 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177
Query: 180 SKSK 183
K +
Sbjct: 178 IKEE 181
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 2e-68
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV 59
MGL L L+ + ++E+ L ++GL NAGKT+++ G + + PT+GFN++ +
Sbjct: 3 MGL----LTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTL 57
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSL 119
+ +WD+GGQ RS W Y + +++VVD+AD + + EL LL + L
Sbjct: 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117
Query: 120 SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+G LL+ NK D PGALS A+ + + L SI S ++ IDWL+
Sbjct: 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177
Query: 180 SKSK 183
S+
Sbjct: 178 ISSR 181
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 4e-68
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 3 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK 61
++ F + L+ L +K+ +L +GL NAGKT+L++++ + +PT+ ++T
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTI 66
Query: 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG 121
+T +DLGG + R +W+ Y A++ IV++VD AD + L S+ EL L+ +++
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMG------------LKSITDREVCCFMISCKNSTNI 169
+P+L+LGNKID+P A+S++ L + G LK + R + FM S
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
Query: 170 DSVIDWLVKH 179
W+ ++
Sbjct: 187 GEGFRWMAQY 196
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 5e-68
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 7 FLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNV 64
L+ LR L QE+ + L+GL NAGKT+L+ +A + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + LS +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
L+ NK D A + + + L +I DR S + ++W+ K+ +K
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 1e-66
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ +F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +
Sbjct: 19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128
WD+GGQ + R +W Y + +++VVD+ D + + S EL +L + L LLV
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK D P A+ LTD++GL+ + R T + +DWL +
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 2e-65
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MG+ + LF QE ++ ++GL NAGKT+++ + PT+G N+ ++
Sbjct: 1 MGIL---FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEEIV 56
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
N +WD+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L
Sbjct: 57 INNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
LL+ NK D ++ ++ + L SI D + + ++W++
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
Query: 181 KSK 183
K +
Sbjct: 177 KIR 179
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 2e-63
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y + +++VVD+ D + ++ +R EL +L + L LLV NK D P A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+TD++GL S+ R + + +DWL +++
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 7e-61
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 3/181 (1%)
Query: 1 MGLWEAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK 58
MG + L QE ++ ++GL NAGKT+++ + PT+G N+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEE 59
Query: 59 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS 118
+ N +WD+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
Query: 119 LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
L LL+ NK D ++ ++ + L SI D + + ++W++
Sbjct: 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
Query: 179 H 179
Sbjct: 180 R 180
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-47
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
R LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 211
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+WD+GGQ + R +W Y + +++VVD+ D + ++ +R EL +L + L LLV
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 271
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK D P A++ +TD++GL S+ R + + +DWL +++
Sbjct: 272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-36
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 15/178 (8%)
Query: 12 RSLFFKQ---EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+ KQ + + + G QN+GKTSL+ ++ T + + + + L
Sbjct: 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTL 59
Query: 69 WDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLS--- 120
D G + R Y + V ++++VD+ DP L+ + L D+L+ S
Sbjct: 60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 119
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMG--LKSITDREVCCFMISCKNSTNIDSVIDWL 176
GI +L+ NK + A + D + ++ + +R + D + L
Sbjct: 120 GIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 177
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-36
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
L + + + G QN+GKTSL+ ++ T + + + +
Sbjct: 36 KLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE-PLSAADYDGSGV 93
Query: 67 KLWDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLS- 120
L D G + R Y + V ++++VD+ DP L+ + L D+L+ S
Sbjct: 94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 153
Query: 121 --GIPLLVLGNKIDKPGALSKQALTDEMGL 148
GI +L+ NK + A + D +
Sbjct: 154 ENGIDILIACNKSELFTARPPSKIKDALES 183
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-36
Identities = 28/191 (14%), Positives = 67/191 (35%), Gaps = 27/191 (14%)
Query: 15 FFKQEMELSLI--GLQNAGKTSLVNVVATGGYSEDM----------IPTVGFNM-----R 57
F +E+ ++ G +GKT+ + + + T+ F+
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 58 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-- 115
+V L+ + GQ + + + R V IV+V D+A L + + ++
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNR-LRANAESMRNMRENL 126
Query: 116 ---KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
+L +P+++ NK D P AL + + + + + +
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFET 182
Query: 173 IDWLVKHSKSK 183
+ + + ++
Sbjct: 183 LKEVSRLVLAR 193
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-35
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 10/173 (5%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGG 73
+ + +GL ++GKT L + TG Y + ++ + N ++ L DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 74 QPRFR-SMWERYCRAVSAIVYVVDAAD-PDNLSISRSELHDLLNKPSLS--GIPLLVLGN 129
R + +R+ + A+V+VVD+A + L+ +L LL+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 130 KIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182
K D A S + + ++ + T R + + + L K K
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRVT--RSAAPSTLDSSSTAPAQLGKKGKE 174
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-29
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 15/173 (8%)
Query: 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVT-KGNVT 65
F + + L+GL+ +GK+S+ VV + + T ++ V
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 66 IKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122
++WD GQ F E R A++YV+DA D +++R + +
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 123 PLLVLGNKIDKPGALSK--------QALTDEMGLKSITDREVCCFMISCKNST 167
V +K+D K Q D++ + + ++ S + +
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS 183
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 3e-21
Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 18/166 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQPRF-- 77
L+G +GK+S+ +++ + + D + T+ + GN+T+ LWD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 78 ---RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSL--SGIPLLVLGNKID 132
+ + V +++V D + L L + + VL +K+D
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMD 126
Query: 133 KPGALSKQALTDEM------GLKSITDREVCCFMISCKNSTNIDSV 172
++ L M + F S + + +
Sbjct: 127 LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAW 172
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 3e-21
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K L L+G GK+S+V + ++E+ PT+G F ++VT T+K WD
Sbjct: 4 IK----LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GQ RF S+ Y R A + V D P + +R + +L + S I + ++GNKI
Sbjct: 60 AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKI 118
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
D ++ + E G K ++ + F S K N++ V
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 7e-20
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
++G GKTSL+N +S T+G F ++V + + + WD GQ RF+S
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + R V V D P L R E + P +VLGNKID
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID---- 128
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
L + + + + + S K + N++ + +++ +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 9e-19
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L+G GK+SL+N T + + T+G F + + + + WD GQ RFRS
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + R + D NLS + E + P ++LGNKID
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID---- 127
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
+S++ ++ E D + S K++TN+
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-18
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 23/171 (13%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GKT+ V TG + + + T+G + IK WD
Sbjct: 16 FK----LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GQ +F + + Y + + D + DL+ IP+++ GNK+
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKV 129
Query: 132 DKPGALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
D K + L+ + IS K++ N + WL +
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQ---------YYDISAKSNYNFEKPFLWLAR 171
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-18
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFR 78
++G GKTSL++ YS+ T+G F ++VT G+ + WD GQ RF+
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
S+ + R V V D + +N+ R E N S P ++LGNKID
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
SK+ ++++ + S KN+ N+D+ + + + + +
Sbjct: 133 --SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-17
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G++ GK+S+ VV D + T ++ + + + +L GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 81 W---ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPG 135
ER ++V A+VYV+D+ D +I+ L ++ I + VL +K+D
Sbjct: 63 SYDSERLFKSVGALVYVIDSQDEYINAITN--LAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 136 ALSK--------QALTDEMGLKSITDREVCCFMISCKNST 167
K Q +E+ + +V ++ S + +
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS 160
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-17
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG---FNMRKVTKGNVTIKL--WD 70
+K + LIG GKT+ +N V G + ++ TVG + + IK WD
Sbjct: 12 YK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVL 127
GQ + + + Y S + D NL+ E ++ + P++V
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG----NEAPIVVC 123
Query: 128 GNKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
NKID ++Q ++ ++ + + + IS K + N L +
Sbjct: 124 ANKIDIK---NRQKISKKLV-MEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-17
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFR 78
++G +GKTSL A + + T+G F +R++T GN+ + L WD+GGQ
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
M ++Y ++ V D + +NL + + + + + LV GNKID
Sbjct: 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKIDLE- 128
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
+ + E +S K ++
Sbjct: 129 --HMRTIKPEKH-LRFCQENGFSSHFVSAKTGDSVF 161
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-17
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 10/160 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+SL+ + ++ T+G F ++ ++ KL WD GQ RFR+
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R ++ V D D + L++L + + I +++GNKID
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID----KEN 135
Query: 140 QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ + G + F+ S K + + LV+
Sbjct: 136 REVDRNEG-LKFARKHSMLFIEASAKTCDGVQCAFEELVE 174
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 6e-17
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS--RSELHDLLN-KPSLSGIPLL 125
G + ++ C V +YV +A S + + + SG PLL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 126 VLG-NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
VL + L E+ L + + + T + I+W+++ +SK
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 7e-17
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
++G GK+S++ G +++D T+G F R++ + ++L WD GQ F +
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + Y R A V V D + +S R ++ + IP ++ NKID
Sbjct: 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----VGDIPTALVQNKIDLL-- 122
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ +E + + R F S K N+ V +L + K
Sbjct: 123 -DDSCIKNEEA-EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 9e-17
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFR+
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D D N+ +++ N LL++GNK D
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD---- 119
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ + +T + G +++ F+ S KN N++ + L K + K
Sbjct: 120 METRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 2e-16
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + L+G GKTSLV +++ I T+G F +K+ G + L WD
Sbjct: 7 FK----VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLG 128
GQ RF ++ Y R + + V D D D + EL +L + I L ++G
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVG 118
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NKID ++ ++ + +S + S K + I+ +
Sbjct: 119 NKIDLE---KERHVSIQEA-ESYAESVGAKHYHTSAKQNKGIEEL 159
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-16
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG F ++ V + +KL WD GQ R+R+
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + D + + + +++ ++++GNK D
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDME-- 141
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ + E G + + ++ F S K + ++ + LV
Sbjct: 142 -EERVVPTEKG-QLLAEQLGFDFFEASAKENISVRQAFERLVD 182
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 3e-16
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 17 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
G RFRS+ Y R + V V D + + ++ S + ++++G
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVG 128
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D K+ ++ E G + F+ S K N+ +
Sbjct: 129 NKTDLA---DKRQVSIEEG-ERKAKELNVMFIETSAKAGYNVKQL 169
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-16
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 30 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
G R+R++ Y R + V D A +N+ EL D + S I ++++G
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVG 141
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
NK D +A+ + ++ ++ F+ S +STN++
Sbjct: 142 NKSDLR---HLRAVPTDEA-RAFAEKNGLSFIETSALDSTNVE 180
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 3e-16
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 16/172 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
L G GK+S + + + E++ T+G F M+ + L WD GQ RFRS
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKID---K 133
+ + Y R ++ + D N+ + D ++ +P++++GNK D
Sbjct: 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDT 148
Query: 134 PGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSKS 184
++ + G + + F S K+ +NI + L + K ++
Sbjct: 149 AATEGQKCVPGHFG-EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-16
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 15 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
GQ RFRS+ Y R + V V D + S ++ S + ++++G
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVG 126
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D K+ ++ E G + F+ S K N+ +
Sbjct: 127 NKTDLS---DKRQVSTEEG-ERKAKELNVMFIETSAKAGYNVKQL 167
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 4e-16
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ D T+G F R + IK WD
Sbjct: 14 FK----IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
GQ R+R++ Y R + V D + +N + SEL + + + + ++G
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIG 125
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
NK D +A+ E K+ F S NS N+D + L+ K
Sbjct: 126 NKSDLA---HLRAVPTEES-KTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 5e-16
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFR+
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D D N+ +++ N LL++GNK D
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSD---- 136
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ + +T + G +++ F+ S KN N++ + L K
Sbjct: 137 METRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAK 178
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 6e-16
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G GK+SLV G + E T+G F + V + T+K WD
Sbjct: 7 FK----LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
GQ R+ S+ Y R A + V D + EL + I + + G
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSG 118
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D +K+A+ + +S D FM S K S N++ +
Sbjct: 119 NKADLA---NKRAVDFQEA-QSYADDNSLLFMETSAKTSMNVNEI 159
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-16
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GKT+L++ +S D T+G F+ R V G +K WD
Sbjct: 26 FK----VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
G R+R++ Y R + V D + EL+D I ++++G
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVG 137
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D + + E + + F+ S +STN++
Sbjct: 138 NKSDLS---QAREVPTEEA-RMFAENNGLLFLETSALDSTNVELA 178
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 7e-16
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT ++ + ++ I T+G F +R + IKL WD GQ RFR+
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D + DN+ + + + + ++LGNK D
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVN-- 126
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
K+ ++ E G + + FM S K + N+++ L + K+K
Sbjct: 127 -DKRQVSKERG-EKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 7e-16
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S++ + ++ PT+G F + V N K WD
Sbjct: 7 LK----VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
G RFR++ Y R +A + V D L EL I + + G
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAG 118
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D + + + K D F+ S KN+ NI+ +
Sbjct: 119 NKCDLT---DVREVMERDA-KDYADSIHAIFVETSAKNAININEL 159
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-16
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GKT LV G + T+G F ++ V +KL WD GQ RFRS
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + Y R+ +A++ D L E+ + + +++GNKID
Sbjct: 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLA-- 144
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
++ ++ + + ++ + ++ S K S N++ +
Sbjct: 145 -ERREVSQQRA-EEFSEAQDMYYLETSAKESDNVEKL 179
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-16
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 6 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GQ R+R + Y R + V D A L + L + S I ++++GNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKS 120
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
D +A+ + ++ ++ F+ S +STN++ ++
Sbjct: 121 DLR---HLRAVPTDEA-RAFAEKNNLSFIETSALDSTNVEEAFKNILT 164
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-15
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R+R+
Sbjct: 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + D A+ + +++ ++++GNK D
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLE-- 140
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ + E G + + D F S K + N+ V + LV
Sbjct: 141 -DERVVPAEDG-RRLADDLGFEFFEASAKENINVKQVFERLVD 181
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-15
Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 20/178 (11%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT------------KGNVT 65
QE+++ LIG AGKTSL+ + + T G N+
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
WD GGQ + + + S + ++D+ N + P++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGG-----KSPVI 154
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
V+ NKID+ + + + E ISCKN ++S+ L
Sbjct: 155 VVMNKIDEN---PSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-15
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFR+
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D D +N+ E+ ++ + L++GNK D
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLT-- 151
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+K+ + K D F+ S KN+TN++ + K +
Sbjct: 152 -TKKVVDYTTA-KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-15
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG F ++ + + + IKL WD G R+R+
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + D + + + +++ +L++GNK D
Sbjct: 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDME-- 126
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ ++ E G + + D F S K++ N+ + LV
Sbjct: 127 -DERVVSSERG-RQLADHLGFEFFEASAKDNINVKQTFERLVD 167
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-15
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR+
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + V D ++LS ++ +L N ++++GNK D
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLE-- 133
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
+++ +T E K + F+ S K N++
Sbjct: 134 -AQRDVTYEEA-KQFAEENGLLFLEASAKTGENVEDA 168
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-15
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
K + L+G GK+S+V + ++ PT+G F + V GN K WD
Sbjct: 24 LK----VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNL-SISR--SELHDLLNKPSLSGIPLLVLG 128
GQ RF S+ Y R +A V V D D+ ++ + EL + I + + G
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAG 135
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
NK D + + + K + + S KN+ NI+ +
Sbjct: 136 NKCDLS---DIREVPLKDA-KEYAESIGAIVVETSAKNAINIEEL 176
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-15
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL- 68
+S+ K L L+G AGK+SLV + E T+G F + + + T+K
Sbjct: 9 KSINAK----LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64
Query: 69 -WDLGGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPL 124
WD GQ R+ S+ Y R +A + V D + + EL N + +
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN----PNMVM 120
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
+ GNK D + +T E ++ FM S K +TN+ +
Sbjct: 121 ALAGNKSDLL---DARKVTAEDA-QTYAQENGLFFMETSAKTATNVKEI 165
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-15
Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 29/175 (16%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM--IPTVG--FNMRKVT---KGNVTIKL--W 69
M+L ++G +GKT+L+ + S+ TVG + K + L W
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADP----DNLSISRSELHDLLNKPSLSGIPLL 125
D G+ F S + + + V D + D + + + P++
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS-----SPVI 116
Query: 126 VLGNKIDKP--------GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
++G +D + + L ++ G +I D F+ + + S + +
Sbjct: 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD---YHFVNATEESDALAKL 168
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-15
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFR+
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D D +N+ E+ ++ + L++GNK D
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLT-- 134
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+K+ + K D F+ S KN+TN++ + K +
Sbjct: 135 -TKKVVDYTTA-KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-15
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG + GKTSL+ + E TVG F ++ V I+L WD GQ RF S
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R+ I+ V D D+L + ++ LL++GNK+D
Sbjct: 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCE-- 144
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ + +T + G K F S K++ N+D + LV K
Sbjct: 145 -TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 9e-15
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 17/163 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+SL+ A +S I T+G F +R V +KL WD GQ RFR+
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R ++ V D N+ E++ + + +++GNK D P
Sbjct: 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDP-- 126
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ + E + S K + N++ + + + +
Sbjct: 127 -ERKVVETEDA-YKFAGQMGIQLFETSAKENVNVEEMFNCITE 167
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 9e-15
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ RFR+
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R I+ V D D + + + E+ + L++GNK D
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLK-- 126
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
K+ + ++ K D F+ S +STN++ + +
Sbjct: 127 -DKRVVEYDVA-KEFADANKMPFLETSALDSTNVEDAFLTMAR 167
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-14
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
FK L L+G + GKT +V TG +SE T+G F M+ + +KL WD
Sbjct: 30 FK----LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLG 128
GQ RFR++ + Y R+ + + D ++ ++ S I L++G
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIG 141
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
NK D + ++ ++ C + S K+S+N++ + +
Sbjct: 142 NKSDLS---ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-14
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFRS
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + V D ++L+ ++ L + I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLD-- 143
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
++ +T F+ S N++
Sbjct: 144 -PEREVTFLEA-SRFAQENELMFLETSALTGENVEEA 178
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-14
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L+ + T+G F R V IKL WD GQ FRS
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + V D ++L+ + + S + ++++GNK D
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGNKSDLE-- 139
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
S++ + E G ++ FM S K + N++
Sbjct: 140 -SRRDVKREEG-EAFAREHGLIFMETSAKTACNVEEA 174
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-14
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F + + G +KL WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + + V D + L+ ++ L ++ I +++ GNK D
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLD-- 128
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ + +T F+ S N++ + +K
Sbjct: 129 -ADREVTFLEA-SRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-14
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELH---DLLNKPSLSGIPLLV 126
G + ++ C V +YV +A H SG PLLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 127 LG-NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
L + L E+ L + + + T + I+W+++ +SK
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 7e-14
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 14/164 (8%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ + G GK+SLV G + + IPT+ R+V L D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M A + V + L + + K S+ IP++++GNK D
Sbjct: 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI--KGSVEDIPVMLVGNKCD--- 125
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+++ + +++ C FM S K + N+ + L+
Sbjct: 126 -ETQREVDTREA-QAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-13
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSED-MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L+G GKT L+ G + I TVG F + + V +KL WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
S+ Y R A++ + D + DN+ +E+H+ + L++LGNK+D
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSA- 129
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
++ + E G + + FM S K N+D + K K +
Sbjct: 130 --HERVVKREDG-EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 4e-13
Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 15/164 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M ++Y R + V + +++ R ++ + + +P++++GNK D
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVLVGNKSD--- 119
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + + + + ++ S K ++ LV+
Sbjct: 120 -LAARTVESRQA-QDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-13
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR- 78
+IG N GKT L G + + T+G F R V IK+ WD GQ RFR
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
SM + Y R V A+V+V D + +L + + + + IP +++GNK D
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSL---PAWIEECKQHLLANDIPRILVGNKCDLR- 140
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCK---NSTNIDSVIDWLVK 178
S + ++ + D S K ++ +++++ L
Sbjct: 141 --SAIQVPTDLA-QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 6e-13
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 23/174 (13%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+++ G GK+SLV G + E IPTV R+V L D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M A + V + L ++ ++ K + IP++++GNK D+
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI--KGDVESIPIMLVGNKCDESP 123
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ +AL C FM S K + N+ + L+ K +
Sbjct: 124 SREVQSSEAEALARTWK---------CAFMETSAKLNHNVKELFQELLNLEKRR 168
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-12
Identities = 33/164 (20%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL--WDLGGQP 75
E+++ ++G ++GK++LV+ TG Y ++ P G +++ + L D GG P
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
++ V A+V+V D + + L + + S +P++++G +
Sbjct: 79 EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
A + + D K TD + C + N++ V + +
Sbjct: 134 ANPRV-IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ 176
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-12
Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK V T L D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M ++Y R + V + ++++ R ++ + + +P++++GNK D
Sbjct: 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD---VPMVLVGNKCD--- 137
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L + + + + F+ S K ++ LV+
Sbjct: 138 -LPTRTVDTKQA-HELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-12
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 17/160 (10%)
Query: 24 LIGLQNAGKTSLVN--VVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL----WDLGGQP 75
++G GK++L++ + +D T G + VT + T+ + D G
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84
Query: 76 RFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
++ +Y V + V D + ++ L + +++ NK D
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE-RPLRAVLVANKTD 143
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFM-ISCK-NSTNID 170
P + + +M + F +S + D
Sbjct: 144 LPP--QRHQVRLDMA-QDWATTNTLDFFDVSANPPGKDAD 180
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 4e-12
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
+ ++G GK++L TG + E PT+ F +++ + L D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
SM + Y + + V + ++ R ++ + +P++++GNK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGNKVDLES 122
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+S +AL +E G C FM S K+ T +D + +V+
Sbjct: 123 EREVSSSEGRALAEEWG---------CPFMETSAKSKTMVDELFAEIVR 162
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 6e-12
Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
++++G ++ GK+SL G + + PT+ K+ L D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ Y ++ + V + + + +L D++ K IP++++GNK D
Sbjct: 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDLHM 125
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+S +AL + F+ S K + V ++
Sbjct: 126 ERVISYEEGKALAESWN---------AAFLESSAKENQTAVDVFRRIIL 165
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-12
Identities = 31/164 (18%), Positives = 67/164 (40%), Gaps = 15/164 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M ++Y R + V + +++ R ++ + + +P++++GNK D
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGNKCD--- 120
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L + + + + + F+ S K +D LV+
Sbjct: 121 -LPSRTVDTKQA-QDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-12
Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + D PT+ + + + +L D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M E+Y RA + V D + + +++ + ++ P++++GNK D
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD---FPVVLVGNKADLES 128
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ + A + S K N+D + LV+
Sbjct: 129 QRQVPRSEASAFGASHH---------VAYFEASAKLRLNVDEAFEQLVR 168
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-12
Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 25/173 (14%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKT+ + ++ I TVG F ++V + L W
Sbjct: 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 89
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLV 126
D GQ RFRS+ + R + + D N+ R+ + L +++
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV---RNWMSQLQANAYCENPDIVL 146
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+GNK D P ++ + + + + D+ + S N++ ++ L+
Sbjct: 147 IGNKADLP---DQREVNERQA-RELADKYGIPYFETSAATGQNVEKAVETLLD 195
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
++ + Y R+ + V + + R ++ + + +P L++GNK D
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLE- 122
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
K+ ++ E K+ D+ ++ S K N+D V L++ +++
Sbjct: 123 --DKRQVSVEEA-KNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-11
Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
+ ++G + GKTSL + G +SE PTV K VT G L D GQ +
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ + V V V + +LH+ K +P++++GNK D
Sbjct: 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR---VPVVLVGNKADLSP 143
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ + L + G FM S + + + +++
Sbjct: 144 EREVQAVEGKKLAESWG---------ATFMESSARENQLTQGIFTKVIQ 183
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-11
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 69
+G GKTS++ G ++ I TVG F ++V I L W
Sbjct: 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLW 75
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLV 126
D G RFRS+ + R + + D + N+ R+ + L +++
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV---RNWISQLQMHAYSENPDIVL 132
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
GNK D ++A+ +E + + ++ + S N TNI I+ L+
Sbjct: 133 CGNKSDLE---DQRAVKEEEA-RELAEKYGIPYFETSAANGTNISHAIEMLLD 181
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-11
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ L+G GK++L P R++ + L +D+ Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 78 RS-MWERYCRAVSA--IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
+ + + A IV+ V D + + L +P +P++++GNK D
Sbjct: 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA--GRPH-HDLPVILVGNKSDL 142
Query: 134 PG--ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
+S + L + C + S N +
Sbjct: 143 ARSREVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 178
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-11
Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
++ + Y R+ + V + + R ++ + + +P L++GNK D
Sbjct: 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLED 137
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+S + ++ ++ S K N+D V L++
Sbjct: 138 KRQVSVEEAKNRAEQWN---------VNYVETSAKTRANVDKVFFDLMR 177
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 5e-11
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 26/165 (15%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
+ L+G GK++L R++ + L +D+ Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 78 RS-MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
+ + + A + V D + + L +P++++GNK D
Sbjct: 65 GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVGNKSDL 121
Query: 134 PG--ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSV 172
+S + L + C + S N +
Sbjct: 122 ARSREVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 157
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-11
Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 17/170 (10%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGG 73
E+ L ++G +GK+SL++ TG Y + + T +K + T + + G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSG-IPLLVLGN 129
P ++ A+++V D +S +L L + + L+ +
Sbjct: 64 APDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 130 KIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+I S + + D D + C + N+D V + +
Sbjct: 119 RISAS---SPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
++ + Y R+ + V + + R ++ + + +P L++GNK D
Sbjct: 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNKSDLED 133
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+S + ++ ++ S K N+D V L++
Sbjct: 134 KRQVSVEEAKNRAEQWN---------VNYVETSAKTRANVDKVFFDLMR 173
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-10
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L G + E PT+ + RK V L D G +F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M + Y + V ++L R ++ + + +P++++GNK D
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGNKCDLE- 121
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ + E G C F+ S K+ N++ + LV+
Sbjct: 122 --DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-10
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 15/164 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFR 78
+ L+G GK++L + G G + L +D+ Q R
Sbjct: 5 VLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ A V V D + S R +L +P++++GNK D
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLV- 119
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ ++ + G ++ C F+ S N+ ++ + +V+
Sbjct: 120 --RSREVSVDEG-RACAVVFDCKFIETSAALHHNVQALFEGVVR 160
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-10
Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 25/170 (14%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFR 78
L ++G GK++L + +D PT+ ++ N L D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+M E+Y R + V D +++ + + ++ S P++++ NK+D
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES---FPMILVANKVDLMH 137
Query: 136 --ALSK---QALTDEMGLKSITDREVCCFM-ISCKNST-NIDSVIDWLVK 178
+++ + + + ++ S K+ N+D LV+
Sbjct: 138 LRKVTRDQGKEMATKYN---------IPYIETSAKDPPLNVDKTFHDLVR 178
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-09
Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 50/191 (26%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK-------------- 67
L+G + GK+S+V + + E+ T+G F V ++ IK
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 68 -------------------------LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN 102
+WD GQ R+ S+ Y R + + V D ++ +
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT 131
Query: 103 LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM-I 161
L +++ ++ L ++++ NKID +K + + F+
Sbjct: 132 LDRAKTWVNQLKISS---NYIIILVANKID----KNKFQVDILEV-QKYAQDNNLLFIQT 183
Query: 162 SCKNSTNIDSV 172
S K TNI ++
Sbjct: 184 SAKTGTNIKNI 194
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-09
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N ++ + + LWD G P + ++
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNKID 132
A++ D + P+ L E+ + P +L++G K D
Sbjct: 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE--FCP---NTKMLLVGCKSD 122
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-09
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 22/165 (13%)
Query: 23 SLIGLQNAGKTSLVNVVATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++G N+GKTSL N + + + P + N I L D G R
Sbjct: 183 GIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR----YAIPINNRKIMLVDTVGFIR 238
Query: 77 ---------FRSMWERYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLV 126
F + A++ V+D+ +NL I ++L + +SG P+LV
Sbjct: 239 GIPPQIVDAFFVTLSEAKYS-DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILV 297
Query: 127 LGNKIDK-PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170
NKIDK G L K+ E K + IS TN++
Sbjct: 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-09
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 26/182 (14%)
Query: 12 RSLFFKQEME--LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL 68
+L+F+ +E L+++G + AGK++L T + + P + + + L
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
Query: 69 --WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIP 123
D R+ ERY A +VY V D+ S L L K + IP
Sbjct: 72 RVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELL-ALHAKETQRSIP 129
Query: 124 LLVLGNKIDKPG--ALSK---QALTDEMGLKSITDREVCCFM-ISCK-NSTNIDSVIDWL 176
L+LGNK+D ++K AL G C F +S + ++ V
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVALAGRFG---------CLFFEVSACLDFEHVQHVFHEA 180
Query: 177 VK 178
V+
Sbjct: 181 VR 182
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-08
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPT-VGFNMRKVTKGNVTIKL--WDLGGQPRFR 78
+ L+G GKTSL ++ A + R +T L D +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
Query: 79 S--MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
E + SA V V AD ++ S R +L +P++++GNK D
Sbjct: 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH---VPIILVGNKADL 123
Query: 134 PGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ ++ E G ++ C F+ S N+ + + +V+
Sbjct: 124 A---RCREVSVEEG-RACAVVFDCKFIETSATLQHNVAELFEGVVR 165
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-08
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 26/173 (15%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQP 75
E++L++ G GK++LV T + + PT+ R + + + D GQ
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 76 RFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
E + R V V D D + + ++ L ++ + + L+++GNK D
Sbjct: 88 DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN---VTLILVGNKAD 143
Query: 133 KPG--ALSK---QALTDEMGLKSITDREVCCFM-ISCK-NSTNIDSVIDWLVK 178
+S + L E+ C F S NI + L +
Sbjct: 144 LDHSRQVSTEEGEKLATELA---------CAFYECSACTGEGNITEIFYELCR 187
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-08
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ A + E+ +PTV + V + L+D GQ + +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 82
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ +P + + E L + +P L++G +ID
Sbjct: 83 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTL 141
Query: 141 ALTDEMGLKSITDRE----------VCCFMISCKNSTNIDSVIDWLVK 178
A ++M K I + C S + +V D +
Sbjct: 142 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-08
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q + + + P + R++ + + P++++G K+D
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDL 146
Query: 134 PGALSKQALTDEMGLKSITDRE----------VCCFMISCKNSTNIDSVID 174
E L IT + V S + +V D
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 6e-08
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G GKT+++ V+A Y E +PTV N + + V + LWD G P + ++
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV 91
Query: 81 WERYCRAVSAIVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGNKID 132
A++ D + P+ + S + ++ +L++G K D
Sbjct: 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--LDYCPSTRVLLIGCKTD 142
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-08
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGG 73
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
Q + + + P + R++ + + P++++G K+D
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 120
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-07
Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 44/181 (24%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTKGNVTI 66
L L + + + G+ +GKT + V + + F N++ +
Sbjct: 142 QALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 67 K-LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+ L L Q W S I + ++EL LL LL
Sbjct: 200 EMLQKLLYQ--IDPNWTSRSDHSSNI--------KLRIHSIQAELRRLLKSKPYE-NCLL 248
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVC-CFMISCK------NSTNIDSVIDWLVK 178
VL N + + + F +SCK D +
Sbjct: 249 VLLN---------------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 179 H 179
H
Sbjct: 288 H 288
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 12/124 (9%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLG 72
K+ +++ ++G GKT L+ + G +PTV N + LWD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLG 128
GQ + + ++ + + + E+ +++G
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH--YID---TAKTVLVG 134
Query: 129 NKID 132
K+D
Sbjct: 135 LKVD 138
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-07
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNKID 132
I+ PD+L E+ +P++++GNK D
Sbjct: 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKD 140
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-07
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 20/172 (11%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ ++ +G GKT L+ + + D +PTV N V V + LWD GQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNK 130
+ + R + + EL P G+P++++G K
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH--YAP---GVPIVLVGTK 121
Query: 131 ID----KPGALSKQALT---DEMGLKSITDREVCCFM-ISCKNSTNIDSVID 174
+D K + G + ++ S K+ N+ V D
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
L+G GKTSLV T GY + IPT N + V V ++L D GQ F +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNKID 132
+ P + E+ P++++G + D
Sbjct: 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-----HCPKAPIILVGTQSD 135
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 28/174 (16%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG------ 73
+ + G N GK++L+ + T P T G N+ + G ++ D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 74 -------QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN--KPSLSGIPL 124
+ ++ + I+Y+ D ++ + E L +P
Sbjct: 230 SERNEIEKQAILALRYL----GNLIIYIFDPSEHCGFPL--EEQIHLFEEVHGEFKDLPF 283
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
LV+ NKID + + L + ++ + IS T ID V + ++K
Sbjct: 284 LVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 19/173 (10%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWD----LGGQ 74
+ L G N GK+S +N+V + + T + ++ D L
Sbjct: 32 IILSGAPNVGKSSFMNIV-SRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 75 PRFRSMWERYCRAV-----SAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVL 127
R+ E I++++D ++ L+I + + + K S +++
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIG 148
Query: 128 GNKID--KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
NKID +LS + + S ++ +
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-06
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR 107
+ T G T ++ K++D+GGQ R W V+AI++ V +D D +
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 108 SELHDLL----------NKPSLSGIPLLVLGNKID 132
E++ + N + +++ NK D
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 74
+ +++ L+G GKTSL+ V A G + E PTV +V V + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + S ++ D P++ + + +N +P++V+G K D
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH-FCKKVPIIVVGCKTD 149
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNKID 132
I+ PD+L E+ +P++++ NK D
Sbjct: 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-----CPNVPIILVANKKD 140
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-06
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N ++ + + LWD G P + ++
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 92
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRS----ELHDLLNKPSLSGIPLLVLGNKID 132
A++ D + P+ L E+ + +L++G K D
Sbjct: 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSD 143
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-06
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR 107
+PT G +V ++ D+GGQ R W V++I+++V ++ D + +
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 108 SELHDL----------LNKPSLSGIPLLVLGNKID 132
+ + + P +++ NK D
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 21/169 (12%)
Query: 22 LSLIGLQNAGKTSLVN--VVATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68
Query: 74 QPRFRSMWERYCRAVSA--IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+ + + + + A IVY + D A + S R +L IP++++GNK
Sbjct: 69 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILVGNK 123
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
D + ++ G ++ F+ S N+ + + +V+
Sbjct: 124 SDLV---RXREVSVSEG-RAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-06
Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 88 VSAIVYVVDAADPDNLSI--SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145
V + +D + N + + +L N+ + + P++V+ K D+ ++ + D
Sbjct: 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG---VERYIRDA 219
Query: 146 MGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
++ + S +++ N+D LV+
Sbjct: 220 HTFAL--SKKNLQVVETSARSNVNVDLAFSTLVQ 251
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-05
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS 150
++ +DAA + ++ + + PL+++ NKID +L +
Sbjct: 307 VLLTIDAATGWT-----TGDQEIYEQ--VKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 151 ITDREVCCFMISCKNSTNIDSVIDWLVK 178
I + IDS+ +++
Sbjct: 360 I-------VHTAAAQKQGIDSLETAILE 380
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 17/88 (19%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS 150
+++V+DA+ P + E +L + + LV+ NK+D ++++ + +++G
Sbjct: 327 VLFVLDASSPLD-----EEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLG--- 376
Query: 151 ITDREVCCFMISCKNSTNIDSVIDWLVK 178
TDR + IS ++ + + + +
Sbjct: 377 -TDRHMVK--ISALKGEGLEKLEESIYR 401
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 24/136 (17%)
Query: 31 GKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRA 87
GKT ++ + + D IPTV N V V + LWD GQ + + R
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80
Query: 88 VSA--IVYVVDAADPDNLSISRSELHDLLNK--PSLS----GIPLLVLGNKIDKPGALSK 139
+ + + S++ ++L K P L +P++++G K+D L
Sbjct: 81 ADIFVLAFSLI---------SKASYENVLKKWMPELRRFAPNVPIVLVGTKLD----LRD 127
Query: 140 QALTDEMGLKSITDRE 155
IT +
Sbjct: 128 DKGYLADHTNVITSTQ 143
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR 107
+ T G K V ++D+GGQ R W + V+AI++VV ++ + +
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 108 SELHDL----------LNKPSLSGIPLLVLGNKID 132
++ + L N L I +++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-05
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR 107
PT G + NV K+ D+GGQ R W +V++I+++V +++ D + +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 108 SELHDL----------LNKPSLSGIPLLVLGNKID 132
+ + L +N S + +++ NK D
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 5e-05
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQAL---TD 144
I++++DA + + N P++V+ NKIDK G + + D
Sbjct: 93 ADVILFMIDATEG----WRPRDEEIYQNFIKPLNKPVIVVINKIDKIG--PAKNVLPLID 146
Query: 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
E+ K E+ IS N+D ++ ++K+
Sbjct: 147 EIHKKHPELTEI--VPISALKGANLDELVKTILKY 179
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 22 LSLIGLQNAGKTSLVN--VVATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 73
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
Query: 74 QPRFRSMWERYCRAVSA--IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+ + + + + A IVY + D A + S R +L IP++++GNK
Sbjct: 100 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILVGNK 154
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
D + ++ G ++ C F+ S N+ + + +V+
Sbjct: 155 SDLV---RCREVSVSEG-RACAVVFDCKFIETSAAVQHNVKELFEGIVR 199
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS 150
I+Y++D +E+ +L L + NK+D + A +
Sbjct: 316 ILYLLDLGTERLDDE-LTEIRELKAA--HPAAKFLTVANKLD----RAANADALIRAIAD 368
Query: 151 ITDREVCCFMISCKNSTNIDSVIDWLVK 178
T EV IS N ID++ +
Sbjct: 369 GTGTEVIG--ISALNGDGIDTLKQHMGD 394
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147
+ V D+A E D++N IP +V+ NKID L ++A +
Sbjct: 114 ADCGILVTDSAPTP------YED-DVVNLFKEMEIPFVVVVNKIDV---LGEKAEELKGL 163
Query: 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+S + +V +S D + + +
Sbjct: 164 YESRYEAKVLL--VSALQKKGFDDIGKTISEI 193
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 3e-04
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL-NKPSLSGIPLLVLGNKID-KP 134
F + ++ + +V +VD D + S LH + N +L++GNK D P
Sbjct: 59 FLRILNGIGKSDALVVKIVDIFDFNG-SWLP-GLHRFVGNNK------VLLVGNKADLIP 110
Query: 135 GALSKQALTD-------EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ + ++GLK F+IS I + D + + K
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGLKPED-----VFLISAAKGQGIAELADAIEYYRGGK 161
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 3e-04
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 88 VSAIVYVVDAADPDNLSISRSELH--DLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145
V+A+V+VVD P + + L KP + +P+L++GNK+D +
Sbjct: 87 VNAVVWVVDLRHP----PTPEDELVARAL-KPLVGKVPILLVGNKLDAAK--YPEEAMKA 139
Query: 146 MGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ + + E M+S + + + L+
Sbjct: 140 YH-ELLPEAEP--RMLSALDERQVAELKADLLAL 170
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 6e-04
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-----QAL 142
V +++VV+ + +LNK P+++ NK+D + Q L
Sbjct: 89 VELVIFVVEGTRWT------PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFL 142
Query: 143 TDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+M I IS + N+D++ + KH
Sbjct: 143 ASQMNFLDI-------VPISAETGLNVDTIAAIVRKH 172
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 9e-04
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 19/145 (13%)
Query: 2 GLWEAFLNWLRSLFFKQE---MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK 58
G + + + + + + +++ G +GK+S +N + G E+ G + +
Sbjct: 49 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG--VVE 106
Query: 59 VTK--------GNVTIKLWDLGGQPRFRSMWERY--CRAVSAIVYVVDAADPDNLSISRS 108
VT + WDL G + Y + + + ++
Sbjct: 107 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR---FKKN 163
Query: 109 ELHDLLNKPSLSGIPLLVLGNKIDK 133
++ + S+ + K+D
Sbjct: 164 DID-IAKAISMMKKEFYFVRTKVDS 187
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.98 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.98 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.96 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.96 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.96 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.96 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.96 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.96 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.96 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.96 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.96 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.96 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.96 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.96 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.96 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.95 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.95 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.91 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.94 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.94 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.94 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.94 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.93 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.93 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.92 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.91 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.91 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.9 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.9 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.9 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.9 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.9 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.89 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.88 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.88 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.88 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.88 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.88 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.88 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.87 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.87 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.87 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.87 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.86 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.86 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.86 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.86 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.85 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.85 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.85 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.85 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.85 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.84 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.84 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.84 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.82 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.81 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.81 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.81 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.81 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.81 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.81 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.79 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.78 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.77 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.76 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.76 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.75 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.73 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.72 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.72 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.7 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.69 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.68 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.66 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.66 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.65 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.65 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.64 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.62 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.62 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.62 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.56 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.51 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.42 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.25 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.22 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.21 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.21 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.17 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.14 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.05 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.02 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.02 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.01 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.85 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.83 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.78 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.72 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.71 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.71 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.56 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.55 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.47 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.28 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.18 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.09 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.05 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.01 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.94 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.92 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.8 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.78 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.75 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.74 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.69 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.69 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.67 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.64 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.63 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.55 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.54 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.51 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.5 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.49 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.46 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.42 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.41 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.38 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.37 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.36 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.34 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.34 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.33 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.32 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.32 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.31 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.3 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.3 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.29 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.27 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.27 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.26 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.26 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.25 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.24 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.24 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.24 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.23 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.23 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.23 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.22 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.21 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.21 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.21 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.2 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.2 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.2 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.2 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.19 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.19 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.19 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.18 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.18 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.18 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.17 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.17 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.17 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.16 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.16 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.15 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.15 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.15 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.15 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.14 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.14 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.13 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.13 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.11 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.11 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.11 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.11 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.11 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.11 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.11 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.1 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.1 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.09 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.09 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.09 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.08 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.08 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.08 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.07 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.06 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.06 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.06 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.06 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.06 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.05 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.05 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.05 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.05 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.05 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.04 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.04 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.03 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.02 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.01 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.01 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.01 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.01 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.01 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.99 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.98 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.98 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.97 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.96 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.95 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.95 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.95 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.94 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.94 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.94 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.94 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.93 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.92 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.91 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.91 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.91 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.89 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.88 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.88 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.88 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.88 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.88 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.87 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.87 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.87 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.86 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.85 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.84 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.84 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.84 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.84 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.83 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.83 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.81 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.81 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.81 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.81 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.81 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.8 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.8 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 96.8 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.79 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.78 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.77 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.77 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.77 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.77 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.77 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.76 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.76 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.76 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.75 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.75 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.74 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.7 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.7 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.7 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.69 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.69 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.68 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.68 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.68 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.67 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.66 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.65 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.64 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.63 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.63 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.63 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.62 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.62 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.62 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.62 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.58 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.57 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.57 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.57 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.57 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.57 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.57 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.55 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.54 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.53 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.53 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.52 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.5 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.5 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.49 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.49 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.47 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.47 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.43 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.41 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.4 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.38 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.37 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.37 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.36 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.36 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 96.34 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.33 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.33 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.33 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.31 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.29 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.28 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.27 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 96.26 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.26 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.22 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.22 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.21 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.2 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.17 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 96.15 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.14 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.14 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.14 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.12 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.11 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.09 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.06 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.04 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.04 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.02 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.01 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 96.01 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.99 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.99 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.98 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.97 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 95.97 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.97 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.96 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 95.94 |
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=205.01 Aligned_cols=178 Identities=33% Similarity=0.602 Sum_probs=144.0
Q ss_pred CchHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
||++. .+++++. ++.++|+++|++|+|||||++++.++. .....+|.+.....+..++..+.+|||||++++..
T Consensus 3 mg~~~----~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 3 MGLLT----ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred cchhH----HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 56443 3333343 688999999999999999999999877 66778888888778888889999999999999998
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 157 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEE
Confidence 88899999999999999999999999988888887764446799999999999987666667666665544445667899
Q ss_pred EeeecCCCCHHHHHHHHHHhhhcC
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
++||++|.|++++++.|.+.+.++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=202.76 Aligned_cols=177 Identities=28% Similarity=0.510 Sum_probs=144.7
Q ss_pred Cc-hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
|| ++..+.+ ++.++.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++++..
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 67 5666665 34478999999999999999999999987776 567788877777778889999999999999988
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+..........+++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 89999999999999999999999999999998887654345799999999999987666666666665443445567899
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=206.78 Aligned_cols=181 Identities=31% Similarity=0.583 Sum_probs=151.5
Q ss_pred Cc-hHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
|| ++..+.+|++- +. ++.++|+++|++|+|||||++++..+.+. ...+|.+.....+..++..+.+|||||++++.
T Consensus 3 m~~~~~~~~~~l~~-f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 3 MGAWLASLKQTLGL-LPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp ---CCSCHHHHHHT-SCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred hHHHHHHHHHHhhh-ccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 55 55666776653 44 68999999999999999999999877765 35678887777788888999999999999988
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeE
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.............+++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 88888899999999999999999999999888888776555689999999999998766667777776655555566789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++||++|.|++++++.|.+.+.++
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=200.39 Aligned_cols=169 Identities=66% Similarity=1.169 Sum_probs=146.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++.++|+++|++|+|||||+++++++.+.....+|.+.....+......+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 34678999999999999999999999988887888999988888888899999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999998988887654446799999999999987666667777666554455667899999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999988765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=200.98 Aligned_cols=173 Identities=32% Similarity=0.588 Sum_probs=142.5
Q ss_pred HHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 10 ~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
+++++.. ++.++|+++|++|+|||||++++.+..+. ...+|.+.....+..++..+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 3444444 57899999999999999999999976543 45677887777777788999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.........+++++|||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999999999999988888887765444679999999999998766666666666544444556789999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNAK 179 (181)
T ss_dssp THHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988665
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=195.37 Aligned_cols=164 Identities=30% Similarity=0.623 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
++|+++|++|+|||||++++.++.+.. ..||.+.....+...+..+.+||+||++.+...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877764 5678887777777888999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++++.|.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999998888888765444679999999999998766667777776655555566789999999999999999999999
Q ss_pred hhcCC
Q 030008 180 SKSKS 184 (184)
Q Consensus 180 l~~~~ 184 (184)
+.+++
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 87764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=202.59 Aligned_cols=173 Identities=31% Similarity=0.606 Sum_probs=143.7
Q ss_pred HHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
++++++.++.++|+++|++|+|||||+++++++.+. ...||.+.....+..++..+.+|||||++++...+..+++++|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 445566678999999999999999999999977765 3567888777778888899999999999999888999999999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988888876554467999999999999876666777777766555556778999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=194.94 Aligned_cols=167 Identities=35% Similarity=0.665 Sum_probs=145.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++.++|+++|++|+|||||++++.++.+. ...+|.+.....+..+...+.+|||||++.+...+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 467899999999999999999999988775 4567888877778888999999999999999998999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++++.
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence 99999999999888888876644467999999999999877666777777665555556778999999999999999999
Q ss_pred HHHhhhcC
Q 030008 176 LVKHSKSK 183 (184)
Q Consensus 176 i~~~l~~~ 183 (184)
|.+.+.++
T Consensus 163 l~~~i~~~ 170 (171)
T 1upt_A 163 LVETLKSR 170 (171)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 99998775
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=201.19 Aligned_cols=179 Identities=33% Similarity=0.638 Sum_probs=145.3
Q ss_pred Cc-hHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
|| ++.++. +.++. ++.++|+++|++|+|||||++++.++.+ ....+|.+.....+..++..+.+||+||++.+.
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 66 444443 33454 6899999999999999999999997766 456778887777777888999999999999988
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeE
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+...........+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 88888999999999999999999999999999888776545689999999999998766667777776655455566789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++||++|.|++++++.|.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=198.44 Aligned_cols=176 Identities=33% Similarity=0.584 Sum_probs=136.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
+++..+++.+. +..+.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++.+...+
T Consensus 8 ~~~~~~l~~~~--~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 8 GWFRDVLASLG--LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred HHHHHHHHHhh--ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 44444554442 3367789999999999999999999988775 56678888778888888999999999999998888
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc-------ccCc
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS-------ITDR 154 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~ 154 (184)
..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+...... ....
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccc
Confidence 889999999999999999999999999888887654446799999999999987556666666554332 2234
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.+++++|||++|.|++++++.|.+.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 57899999999999999999998653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=199.56 Aligned_cols=167 Identities=29% Similarity=0.615 Sum_probs=141.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
....+|+++|++|+|||||+++|+++.+.. .+.+|.+.....+......+.+|||||++.+...+..+++++|++++|+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 94 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVV 94 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 467899999999999999999999998887 7789999888888888999999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL-------SGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 167 (184)
|+++++++..+..|+..+...... ..+|+++|+||+|+.+....+++...+..... ....+++++|||++|.
T Consensus 95 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (199)
T 4bas_A 95 DSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGT 174 (199)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTB
T ss_pred ECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCcc
Confidence 999999999998888887654221 27899999999999877677777777664433 4466789999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 175 gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 175 GVHEGFSWLQETASRQ 190 (199)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=207.16 Aligned_cols=159 Identities=22% Similarity=0.362 Sum_probs=120.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+++||+++|++|+|||||+++|+.+.+...+.||++..+. .+. ...+.+.+|||+|++++..++..+++.++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 5699999999999999999999999999899999885433 233 344789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|++++++|..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+ .....+++|++|||++|.||++
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCHHH
Confidence 999999999999999998876542 3578999999999986432 2222111 1222345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|++.+.+
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=196.46 Aligned_cols=164 Identities=32% Similarity=0.607 Sum_probs=129.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 357789999999999999999999987764 4567777777778888899999999999999888888999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc------------ccCcceeEEEeee
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS------------ITDREVCCFMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 163 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+....++..+...... .....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887654446799999999999976555666555544321 0124568999999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 030008 164 KNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l 180 (184)
++|+|++++++.|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=194.55 Aligned_cols=162 Identities=27% Similarity=0.502 Sum_probs=138.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+.++|+++|++|+|||||+++++++.+ ....+|.+.....+..++..+.+||+||++++...+..+++++|++++|+|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4679999999999999999999998877 456677777777777788999999999999999888999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..+.......++|+++|+||+|+.+....+++.+...........++++++||++|.|++++++.|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999888888765434679999999999998766667777766655445566789999999999999999999
Q ss_pred HHh
Q 030008 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 865
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=193.89 Aligned_cols=167 Identities=28% Similarity=0.607 Sum_probs=139.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-CCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+.++|+++|++|+|||||++++.+.. +.....+|.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 567999999999999999999999877 4566778888887788888899999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC--CCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL--SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....++..+...... .++|+++|+||+|+.+....+++.+...........++++++||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999999999988888888765443 579999999999998766666666655433333446789999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.+.
T Consensus 179 ~~l~~~i~~~ 188 (190)
T 2h57_A 179 DWLQDQIQTV 188 (190)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=204.41 Aligned_cols=166 Identities=31% Similarity=0.633 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+... .+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4567999999999999999999998776533 468888888888889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++......++|+++|+||+|+.+....+++...+.........++++++||++|.||+++++.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999888888776555689999999999998877778888888777767778899999999999999999999
Q ss_pred HHhhhcC
Q 030008 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~l~~~ 183 (184)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9998765
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=186.99 Aligned_cols=165 Identities=27% Similarity=0.418 Sum_probs=127.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ....+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999888777777777443 33333 34689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.....++............+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999988888887776543 3578999999999986532111111010011111234579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999887654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=184.31 Aligned_cols=159 Identities=17% Similarity=0.274 Sum_probs=124.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+.+||+++|++|+|||||+++++++.+.....+|.+.....+..++ ..+.+|||+|++.+. +++.+|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 356899999999999999999999999888777777654444555544 677889999998877 6778999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++++++..+..|+..+.........|+++|+||+|+.+. ...++....... ...++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCCH
Confidence 9999999999999888888876654467899999999998421 122222211111 11257999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++|+.|.+.+.++
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=181.77 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.++|+++|++|+|||||++++.+.... ...++.+.... . +......+.+||+||++.+......+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999865543 22333333222 2 2334467899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC----AVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH----HHHhCCcEEEeccCCCCCHHHHHH
Confidence 99999999999999888877655578999999999999753221 1111111 112335799999999999999999
Q ss_pred HHHHhhhcCC
Q 030008 175 WLVKHSKSKS 184 (184)
Q Consensus 175 ~i~~~l~~~~ 184 (184)
.|.+.+.+++
T Consensus 157 ~l~~~~~~~r 166 (166)
T 3q72_A 157 GVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999987653
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=185.58 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=128.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... ....++ ..+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998887777777774442 233333 557789999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeec-CCCCHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCK-NSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~ 170 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||+ ++.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCHH
Confidence 99999999999988888877654444679999999999986522 222221111 1123579999999 999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 171 ~l~~~l~~~i~~q 183 (183)
T 3kkq_A 171 KTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=182.41 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... ...+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5789999999999999999999988887776677664433 23333 36899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999998888888777665444579999999999986432 222222221 122357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 158 ~~~l~~~i~~~ 168 (168)
T 1u8z_A 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999988653
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=182.67 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+..... +. .....+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988877777777754432 22 3457899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++...... .....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 99999988888888877766543345799999999999965322 222222111 112457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
++.|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=184.76 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=129.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE---EEEeC-----------cEEEEEEecCCchhhHHhH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~G~~~~~~~~ 81 (184)
.+..++|+++|++|+|||||++++.++.+.....+|.+.... .+... ...+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 356799999999999999999999998887777888876544 33333 4689999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEE
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++++|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCEE
Confidence 99999999999999999999998888888777655444579999999999996522 222222111 11234799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||+++.|++++++.|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=182.21 Aligned_cols=162 Identities=17% Similarity=0.310 Sum_probs=125.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||++++.++.+.....+|..... ..+..++ ..+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998887766666665333 3333333 558889999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+++++..+..|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999998888887776555568999999999999754332222222211 123479999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=182.25 Aligned_cols=160 Identities=17% Similarity=0.302 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+...+ ..+.+||+||++.+...+..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998887766666665332 3333333 5699999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++..+..++..+.......+.|+++|+||+|+.+... ..+... + ....+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-L----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-H----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999988888888776655556799999999999864322 221111 1 1112347999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
++.|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=179.89 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=127.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988887777777775432 2333 3578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999998988888877765542 2578999999999986432 222222211 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-32 Score=189.52 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..... +......+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999998887777777754432 2345688999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+... ..+.. .+ ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KL----AESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HH----HHHhCCeEEEEeCCCCCCHH
Confidence 9999999999999999998887765556799999999999864322 11111 11 11234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 176 ~l~~~l~~~i~~~ 188 (201)
T 3oes_A 176 GIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=180.88 Aligned_cols=162 Identities=20% Similarity=0.359 Sum_probs=129.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++++..+.....+|.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999998887777777764432 3333 3478999999999999989999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|++++.++..+..|+..+........+|+++|+||+|+.+... .++..... ...+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 9999999999988888888887665556799999999999954322 22222211 12345799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+++.|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=184.70 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=121.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 456999999999999999999999988877777777633 34454444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcce-eEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREV-CCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999988888887765433 356899999999999652 2222222221 11234 7999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=184.89 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=127.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 46799999999999999999999988887777777775543 233444 678999999999998888889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 999999999999988888876665556799999999999864322 22222111 12245799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.|.+.+.++
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=182.01 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=129.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+.....+|.+.... .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 356799999999999999999999998887777777775443 344443 67899999999999888999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++.. .+ ....+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AF----GASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHcCCeEEEecCCCCCCHH
Confidence 9999999999998888888775544446799999999999965322 22211 11 11234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 161 ~l~~~l~~~~~~ 172 (181)
T 2fn4_A 161 EAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=182.14 Aligned_cols=161 Identities=22% Similarity=0.346 Sum_probs=127.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+..... +. .....+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 567999999999999999999999988877777777755433 22 34578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 9999999999988888877765432 356899999999999642 2222322222 1234679999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=176.05 Aligned_cols=163 Identities=21% Similarity=0.380 Sum_probs=124.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888777777777543 3344444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|+..+... ....++|+++|+||+|+.+... .++...... ....++++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 999999998888887776665432 2225689999999999974322 222222211 12345799999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=181.81 Aligned_cols=161 Identities=27% Similarity=0.446 Sum_probs=124.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhH-HhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFR-SMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~~~i 91 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++++. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 467999999999999999999999888877777776643 33344443 689999999999988 7888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCC---
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNS--- 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 166 (184)
++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++. ..+. ...+++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKFA----DTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCCEEECCSSSGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH-HHHH----HHcCCEEEEEeCCcCCcc
Confidence 9999999999998888888877665545679999999999996432 22221 1111 123357999999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++|+.|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=183.74 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999998888777777766443 3344443 58999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCCHH
Confidence 999999999999988888877765545679999999999996532 222222221 1223579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 166 ~l~~~l~~~i~~ 177 (206)
T 2bov_A 166 KVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=183.98 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=124.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +.. ....+.+|||||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 467999999999999999999999998877778888755443 333 34667999999999999999999999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCccee-EEEeeecCCC
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVC-CFMISCKNST 167 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|+|+++++++..+ ..|+..+... ..++|+++|+||+|+.+.. ..++..... ...+++ ++++||++|.
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCC
Confidence 9999999999887 4444444322 2468999999999997431 122221111 112234 9999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=178.78 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999998887777777775433 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+... .....|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999998888887777766543 235789999999999965322 22221111 1224579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=180.04 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeC--cEEEEEEecCCchhhHH-hHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKG--NVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~--~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii~ 93 (184)
.++|+++|++|+|||||++++.+........+ +.......+..+ ...+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999986655433332 333333444444 46788999999998865 66677888999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++.... ....+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999998888766555579999999999986422 22222111 112345799999999999999
Q ss_pred HHHHHHHhhhcCC
Q 030008 172 VIDWLVKHSKSKS 184 (184)
Q Consensus 172 l~~~i~~~l~~~~ 184 (184)
+++.|.+.+..++
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=180.26 Aligned_cols=162 Identities=20% Similarity=0.312 Sum_probs=123.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999888776677777654433 222 336799999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....++..+.... ...+.|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWKCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH----HHHhCCeEEEecCCCCcCHHHH
Confidence 99999988887777766554321 2246899999999998643221 1111111 1122457999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 158 ~~~l~~~~~~~ 168 (172)
T 2erx_A 158 FQELLNLEKRR 168 (172)
T ss_dssp HHHHHHTCCSS
T ss_pred HHHHHHHHhhh
Confidence 99999988765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=186.28 Aligned_cols=161 Identities=21% Similarity=0.373 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC------------cEEEEEEecCCchhhHHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG------------NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~~~D~~G~~~~~~~~~ 82 (184)
++.++|+++|++|+|||||+++|+++.+...+.+|.+..+. .+... ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 56799999999999999999999988887666677664432 22222 57899999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEE
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++++++..+..|+..+........+|+++|+||+|+.+... .++..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 99999999999999999999988888887776554446799999999999965322 22222111 112357999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||+++.|++++++.|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=181.00 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4568999999999999999999999888777777776443 3444444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.... .+.... ....+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF-----ADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Confidence 9999999999888888877665432 257899999999999754321 111111 11223479999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=186.68 Aligned_cols=167 Identities=20% Similarity=0.362 Sum_probs=116.0
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhcc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
++...++.++|+++|++|+|||||+++++++.+.....+|.+... ..+..+ ...+.+||+||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 333446789999999999999999999998887766667666332 333333 4679999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-------CCHHHHHhHhCcCcccCcceeEEE
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-------LSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+|++++|+|+++++++..+..|+..+... ...++|+++|+||+|+.+. ....+....+ ....++++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~ 175 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL----AMTYGALFCE 175 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHHTCEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH----HHHcCCeEEE
Confidence 99999999999999888888777665432 2246899999999998521 1111111111 1123457999
Q ss_pred eeecCCCCHHHHHHHHHHhhhcC
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+||++|.|++++++.|.+.+.++
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=179.77 Aligned_cols=161 Identities=21% Similarity=0.315 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 5679999999999999999999999888777777766433 333333 468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+.... ....|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHH
Confidence 9999999998888888887776543 25789999999999964322 22222221 1234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 164 ~l~~~l~~~~~~~ 176 (181)
T 2efe_B 164 EIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=182.08 Aligned_cols=161 Identities=21% Similarity=0.307 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.+..+.....+|.+.... .+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 46799999999999999999999988887776677664433 233333 679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999988888888777665544579999999999986532 222222222 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=179.28 Aligned_cols=160 Identities=20% Similarity=0.300 Sum_probs=125.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 5679999999999999999999999888766667766433 33333 3468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999988888888777665432 2478999999999996432 222222221 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=173.81 Aligned_cols=162 Identities=15% Similarity=0.293 Sum_probs=125.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+... ...+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 358999999999999999999998887766666666433 233333 46789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+.+++++..+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999988888887777765544345799999999999876332222222211 11234799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|.+.+.++
T Consensus 158 ~l~~~~~~~ 166 (166)
T 2ce2_X 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=180.39 Aligned_cols=160 Identities=22% Similarity=0.395 Sum_probs=125.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999888777777776433 334433 468999999999999888899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999988888887777665433 468999999999986532 222222211 1223579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999887653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=183.57 Aligned_cols=160 Identities=24% Similarity=0.367 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4569999999999999999999999888877778877543 3344443 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++... + ....+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-F----SEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877665432 25689999999999964322 222211 1 11234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=176.51 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=120.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766433 334433 4689999999999998888899999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 999999988888888777665432 24789999999999954322222111111 1123579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=181.04 Aligned_cols=162 Identities=23% Similarity=0.420 Sum_probs=118.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeEEE--EEeC--cEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ....+|.+..+.. +..+ ...+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 357899999999999999999999988874 3556666654432 3333 3689999999999999989999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+... .++..... ...+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 9999999999888888877776654322 5789999999999975322 22221111 11235799999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=184.28 Aligned_cols=162 Identities=21% Similarity=0.215 Sum_probs=125.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||+++++++.+...+.+|.+..+.. +..+ ...+.+||+||++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3578999999999999999999999988877777777755432 3333 47799999999988 777888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC-CH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST-NI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v 169 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCH
Confidence 999999999998888877776654344579999999999996532 222221111 1124579999999999 99
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=179.72 Aligned_cols=160 Identities=20% Similarity=0.314 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 5679999999999999999999999888777777776443 3344444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999998888888876654332 2578999999999996422 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=180.63 Aligned_cols=160 Identities=22% Similarity=0.350 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++++..+.....+|.+.... .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999998887777777764433 2332 3478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999988888888887776542 3578999999999996532 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=184.71 Aligned_cols=161 Identities=20% Similarity=0.353 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..+||+++|++|+|||||+++++++.+.....+|.+.... .+ ......+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46699999999999999999999988877776666663332 23 345688999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++... + ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-L----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCHH
Confidence 999999999998888877776543 235799999999999864322 221111 1 11224579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=182.46 Aligned_cols=162 Identities=19% Similarity=0.308 Sum_probs=124.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEEEeCc---EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+ .....+...+ ..+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998877655556665 4445555544 7899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCc-EEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPS-LSGIP-LLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|+++++++..+..|+..+..... ....| +++|+||+|+.+.. ..++..... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 999999999888888777666543210 01345 89999999996422 222222111 1223579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=181.38 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+..++|+++|++|+|||||++++++..+.....+|.+.... .+... ...+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 356799999999999999999999998887777777775443 33333 46899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCH
Confidence 99999999998888888877765432 34689999999999965322 22211111 112347999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 159 KQTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=178.04 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=111.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEeC--cEEEEEEecCCchh--hHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTKG--NVTIKLWDLGGQPR--FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~--~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++.+..+.... ++.+. ....+..+ ...+.+||+||++. +......+++.+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999987765332 23332 23334433 35789999999887 45666778889999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCC
Confidence 999999999999998888887776554445799999999999975322 222111 1 112235799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
++++++.|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 156 VAELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=178.79 Aligned_cols=160 Identities=22% Similarity=0.377 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+|||||++.+...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 569999999999999999999998888777777776433 3344443 689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++.....|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence 999999988888888877765432 24689999999999864322 22222111 12245799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+++.|.+.+.++
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=180.23 Aligned_cols=159 Identities=23% Similarity=0.407 Sum_probs=124.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 5679999999999999999999998887777677766443 4455555 78999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+... ..+.... ....+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF-----AGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 9999999999998888887775532 4789999999999865322 1211111 11223479999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=177.35 Aligned_cols=158 Identities=22% Similarity=0.367 Sum_probs=125.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCc-------------------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~------------------------------- 63 (184)
++.++|+++|++|+|||||+++|++..+.....+|.+.... .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999998887777777764432 233322
Q ss_pred --------EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 --------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 --------~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
..+.+||+||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|..+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999998888888887776542 399999999999432
Q ss_pred C-CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 136 A-LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
. ...++..+... ..+++++++||++|.|++++++.|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2 22233322221 134579999999999999999999988764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=176.81 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=120.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999998887766667766433 3344433 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++..... . .....+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~---~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFA-Q---QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-H---TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-H---hcCCCeEEEEeCCCCCCHH
Confidence 999999998888887776655432 235799999999999964322 22222111 1 1124579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=182.33 Aligned_cols=161 Identities=22% Similarity=0.359 Sum_probs=125.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+..++|+++|++|+|||||+++++++.+.....+|.+.... .+.. ....+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345699999999999999999999998887777777764433 3333 346899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999988888888777765432 34789999999999965322 22211111 112347999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 173 ~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 173 KQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=178.97 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=119.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC--cEEEEEEecCCchhhHH-hHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG--NVTIKLWDLGGQPRFRS-MWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~--~~~~~~~D~~G~~~~~~-~~~~~~~~~~~i 91 (184)
.+.++|+++|++|||||||+++|++.... ..+..+.......+..+ ...+.+||++|++.+.. +...+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46799999999999999999999743332 22222333333444433 46788999999987754 677788999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCCH
Confidence 9999999999999998888877654433579999999999996432 222222111 112357999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++|+.|.+.+.++
T Consensus 176 ~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 176 RELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=180.45 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=122.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 457999999999999999999999988876666666533 33444443 68999999999999888899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 2578999999999996422 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=179.58 Aligned_cols=160 Identities=25% Similarity=0.327 Sum_probs=119.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ....+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988887777777775433 3333 3468999999999999888888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 9999999988888887776654321 2468999999999996532 222222211 1223579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=176.73 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=115.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+.. ..+|.+..+ ..+..+ ...+.+|||||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999988876 566666433 333333 36789999999887 356788999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCCCC---C-CCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 94 VVDAADPDNLSISRSELHDLL--NKPSLSGIPLLVLGNKIDKPG---A-LSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiv~nK~D~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|+|+++++++..+..|+..+. ......++|+++|+||+|+.. . ...++...... ....++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 999999999988887543322 122225789999999999842 1 12222221111 1124579999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.|.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=183.57 Aligned_cols=160 Identities=23% Similarity=0.385 Sum_probs=98.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999998877766667776443 3344444 78999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888877765432 24689999999999975322 22222111 1224579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=177.67 Aligned_cols=163 Identities=19% Similarity=0.295 Sum_probs=125.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+.. +. .....+.+|||||++.+...+..++..+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999988877777777754433 22 234679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..++..+.... ...+.|+++|+||+|+.+.....+....+ ....+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV----AQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH----HHHhCCeEEEEecCCCCCHHHH
Confidence 999999988887776665443321 12468999999999997533221111111 1122357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 162 ~~~l~~~~~~~ 172 (199)
T 2gf0_A 162 FQELLTLETRR 172 (199)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999987654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=182.93 Aligned_cols=160 Identities=22% Similarity=0.255 Sum_probs=120.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+...+.+|.+..+. .+. .....+.+|||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 46799999999999999999999998887777888875432 222 33477899999999887764 568899999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeee-cCCCC
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISC-KNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 168 (184)
|+|+++++++..+..|+..+..... ..++|+++|+||+|+.+.. ..++..+.. ...+++++++|| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcccc
Confidence 9999999999998888777654321 1468999999999996422 222221111 112357999999 89999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
++++|+.|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=175.83 Aligned_cols=161 Identities=16% Similarity=0.285 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 569999999999999999999998887666666665433 233333 36699999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+.++.++..+..|+..+.......++|+++|+||+|+.+... .++..+.. ...+++++++||++|.|+++++
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999988888877777665443335799999999999875322 22222211 1123479999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.+.
T Consensus 175 ~~l~~~~~~~ 184 (190)
T 3con_A 175 YTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=181.35 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=124.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||+++++++.+...+.+|.+..+.. +......+.+|||||++++...+..+++++|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 467999999999999999999999998888878888765442 33455789999999999999999999999999999
Q ss_pred EEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhHhCcCcccCcce-e
Q 030008 94 VVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--------------LSKQALTDEMGLKSITDREV-C 157 (184)
Q Consensus 94 v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 157 (184)
|+|+++++++.. +..|+..+.... .+.|+++|+||+|+.+. ...++... .....++ +
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 177 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGAEI 177 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCCCE
Confidence 999999999988 566666665432 47999999999999642 11111111 1112234 7
Q ss_pred EEEeeecCCCC-HHHHHHHHHHhhhcC
Q 030008 158 CFMISCKNSTN-IDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~~~~~-v~~l~~~i~~~l~~~ 183 (184)
+++|||++|.| ++++|+.|.+.+.++
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 99999999998 999999999887654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=182.15 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=117.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888776666766633 33444444 78999999999988888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 25789999999999864322 22222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=178.04 Aligned_cols=162 Identities=23% Similarity=0.402 Sum_probs=124.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..+.++|+++|++|+|||||++++++..+.....+|.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 4567999999999999999999999888877777776643 33455454 7899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|++++.++..+..|+..+.... ...+|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999988888887777665432 24689999999999953322211111111 11234799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 172 l~~~l~~~~~~ 182 (213)
T 3cph_A 172 IFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=175.53 Aligned_cols=162 Identities=26% Similarity=0.424 Sum_probs=113.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEeC---cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTKG---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
++.++|+++|++|+|||||++++++..+.....+|.+. ....+... ...+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 56799999999999999999999998887776777653 33334433 47899999999999998888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCC---CHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGAL---SKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|+|+++++++..+..|+..+.... ...++|+++|+||+|+.+.. ..++...... .....+++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCC
Confidence 99999999988888887776654332 23578999999999985321 1222221111 12345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQ 178 (182)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-30 Score=179.95 Aligned_cols=172 Identities=18% Similarity=0.259 Sum_probs=119.5
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHH
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+.+.+++.. ..+.++|+++|++|+|||||+++++++.+.....+|.+.... .+. .....+.+|||||++.+...+.
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 96 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 96 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 344444433 356799999999999999999999988887777777664332 233 3446677999999999998888
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---------ccc
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---------SIT 152 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~ 152 (184)
.+++++|++++|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.....+........ ...
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 8999999999999999999998886 4555444332 579999999999997543222211111100 011
Q ss_pred C-cceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 153 D-REVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 153 ~-~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. ...+++++||++|.|++++++.|.+.+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1 123699999999999999999998765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-30 Score=180.29 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=126.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 5679999999999999999999999888777777776443 3344443 68999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888877765432 3468999999999997532 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=178.80 Aligned_cols=163 Identities=25% Similarity=0.402 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.+..+...+.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56899999999999999999999998887777777764433 3333 3478999999999999888888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+.....+....+.. ....++++++||++|.|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCceEEEEeCCCCCCH
Confidence 99999999888888777766543321 246899999999999743322221221111 123457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=175.69 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----------CCCccceeEEE-----EEeCcEEEEEEecCCchhhHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----------MIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+..++|+++|++|+|||||++.+.+ .+... ..+|.+..+.. +......+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 5679999999999999999976664 33322 23344433322 2234578999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCC------cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc
Q 030008 81 WERYCRAVSAIVYVVDAAD------PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..+++++|++++|+|+++ .+++..+..|+..+. ....++|+++|+||+|+.+....++..+.... .
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~ 163 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----E 163 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----T
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----c
Confidence 9999999999999999994 456666666776662 23367999999999999876666655554433 2
Q ss_pred ce-eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EV-CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++ +++++||++|.|++++++.|.+.+.+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 34 79999999999999999999988754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-30 Score=183.49 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe--C---cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK--G---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~--~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
...++|+++|++|+|||||+++++++.+.....+|.+........ . ...+.+|||||++.+......++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 467999999999999999999999888776667777755444321 1 17899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+....+ ....+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCHH
Confidence 99999999998888887776664432 2458999999999997532 112222222 12345679999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 164 ~l~~~l~~~~~~~ 176 (218)
T 4djt_A 164 LPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-30 Score=179.42 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccc--eeEEEEEeC----cEEEEEEecCCchhhHHhHHHHhccC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+ .....+... ...+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999988 66666677776 333445544 57899999999999999999999999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCC-C--CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPG-A--LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|+++++++..+..|+..+..... ...+|+++|+||+|+.+ . ...++..... ...+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999998888887765432 25789999999999975 2 1222222221 112357999999
Q ss_pred cC-CCCHHHHHHHHHHhhhc
Q 030008 164 KN-STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~-~~~v~~l~~~i~~~l~~ 182 (184)
++ |.|++++++.|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=174.51 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeC---cEEEEEEecCCchhhHH-hHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+...+.++ ......+..+ ...+.+|||||++.+.. .+..+++.+++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 46799999999999999999999988876555443 3344445544 67899999999999987 7888899999999
Q ss_pred EEEeCCCcC-cHHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------------------
Q 030008 93 YVVDAADPD-NLSISRSELHDLLNK--PSLSGIPLLVLGNKIDKPGALSKQALTDEMGL--------------------- 148 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 148 (184)
+|+|+++.+ ++.....++...+.. .....+|+++|+||+|+.+....+.....+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998853 345555555544322 22346899999999999765544332222110
Q ss_pred ----------Cccc-C--cceeEEEeeecCC------CCHHHHHHHHHHhh
Q 030008 149 ----------KSIT-D--REVCCFMISCKNS------TNIDSVIDWLVKHS 180 (184)
Q Consensus 149 ----------~~~~-~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~l 180 (184)
.... . ..+++++|||++| .||+++|+.|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1678999999999 99999999998753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-30 Score=178.22 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=122.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..+ ..+..+ ...+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 4678999999999999999999999888777777776443 234433 3789999999999999888899999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh---------CcCcccCcce-eEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM---------GLKSITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+..... ........+. +++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 99999999888886 5655554432 378999999999997532110000000 0000111122 799999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.|.+.+.
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-30 Score=182.32 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=120.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||+++|.+..+.....+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 456999999999999999999999988877666776643 33444444 68999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ...+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888877765432 3568999999999996432 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=174.64 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=122.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 36799999999999999999999988887776777664332 2333 34678899999999998888889999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S 162 (184)
|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+...... .......+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999998888876 4555544322 3789999999999965321111111100 00111122 3799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=174.63 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=121.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+. .+. .....+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 56799999999999999999999998887777777775442 233 344789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhHhCcCcccCc-cee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGA--------------LSKQALTDEMGLKSITDR-EVC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~-~~~ 157 (184)
|+|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .... ..+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 157 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAAT 157 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCcE
Confidence 9999999998887 45555443322 46899999999999642 111111111 1111 247
Q ss_pred EEEeeec-CCCCHHHHHHHHHHhhhcC
Q 030008 158 CFMISCK-NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~-~~~~v~~l~~~i~~~l~~~ 183 (184)
++++||+ ++.|++++|+.+.+.+.++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 9999998 6899999999999887653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=178.94 Aligned_cols=165 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+...+.+|...... .+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988877666666664432 2333 34579999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcce-eEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+...... .......+. +++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999988886 4555544322 4689999999999975422111110000 011111233 799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=174.01 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=117.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+.....+|.+... ..+..+ ...+.+|||||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 4578999999999999999999999888776667766443 223333 3689999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---------cccCcce-eEEEee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---------SITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S 162 (184)
|+|+++++++... ..|+..+.... .++|+++|+||+|+.+.....+........ .....+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999999888887 44444443321 479999999999997542221111111110 0011122 799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=178.24 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=121.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
....++|+++|++|+|||||++++.++.+...+.+|.+..+ ..+..+ ...+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35679999999999999999999999888777777766433 233333 368999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------CcccCcce-eEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSITDREV-CCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 161 (184)
+|+|+++++++..+. .|...+.... .+.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999998888884 4444443321 47899999999999754221111111000 00111223 79999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=177.56 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=121.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999998887777777774432 2333 34789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHhHhCcCcccCcc-eeEEEe
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL----------SKQALTDEMGLKSITDRE-VCCFMI 161 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (184)
|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..++.... ....+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEc
Confidence 99999999988886 5655554332 379999999999986431 11111111 11112 379999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++|+.|.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=175.44 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=114.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccc--eeEEEEEeCc--EEEEEEecCCchh-hHHhHHHHhccCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~~ 89 (184)
...++|+++|++|+|||||+++|++... .... ++++ .....+..++ ..+.+|||+|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3569999999999999999999995432 2222 2233 2233344433 5678999999877 4555556678899
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|..+..|+..+.......++|+++|+||+|+.+.. ..++. .. .....++++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~----~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RA----CAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HH----HHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HH----HHHHcCCEEEEEeCCCCC
Confidence 999999999999999988887776543333479999999999996421 11111 11 111234579999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
||+++|+.|.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=175.17 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE---EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+......+.+|||||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 56799999999999999999999988877666666653321 123344667899999999999888899999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------------HHHHHhHhCcCcccCcc-eeEE
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALS------------KQALTDEMGLKSITDRE-VCCF 159 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 159 (184)
|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+... .++... .....+ .+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~ 158 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAYI 158 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEEE
Confidence 99999999888886 4555544322 3799999999999864321 111111 111122 3799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999987653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=180.84 Aligned_cols=160 Identities=21% Similarity=0.409 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE----EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||+++++.+.+...+.+|.+...... ......+.+|||||++.+...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999776666666667776444332 234578999999999999988899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|++++.++..+..|+..+.... .++|+++|+||+|+.+.....+ ........+++++++||++|.|++++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999988888887776543 4789999999999975433211 11122233567999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.+.
T Consensus 166 ~~~l~~~l~~~ 176 (221)
T 3gj0_A 166 FLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999887653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=173.99 Aligned_cols=163 Identities=16% Similarity=0.324 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEEEE-------eCcEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
+++|+++|++|||||||++++++. .+...+.+|.+....... .....+.+|||+|++++......++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999974 344556777776544332 24568999999999999888888899999
Q ss_pred EEEEEEeCCCc-CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce----eEEEeeec
Q 030008 90 AIVYVVDAADP-DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV----CCFMISCK 164 (184)
Q Consensus 90 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 164 (184)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888877765432 3689999999999974322111111111111112223 38999999
Q ss_pred CCC-CHHHHHHHHHHhhhcC
Q 030008 165 NST-NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~-~v~~l~~~i~~~l~~~ 183 (184)
++. |++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=174.68 Aligned_cols=160 Identities=19% Similarity=0.265 Sum_probs=114.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||+++++++.+...+.+|.+..+. .+..++ ..+.+|||||++++...+..++.++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 467899999999999999999999988877777777764432 344444 57889999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhHhCcCcccCcc-e
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL--------------SKQALTDEMGLKSITDRE-V 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~-~ 156 (184)
+|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.. ..++... + ....+ .
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 169 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKAA 169 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCCc
Confidence 999999999988886 5665554432 379999999999986421 1111111 1 11112 3
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++++||++|.|++++++.|.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999887754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=175.84 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=122.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+..++|+++|++|+|||||++++.+..+...+.+|.+..+. .+. .....+.+|||||++.+...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 56799999999999999999999998887777777775443 233 334789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhHhCcCcccCc-cee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--------------SKQALTDEMGLKSITDR-EVC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 157 (184)
|+|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..++.... .... ..+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 178 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAAT 178 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCCE
Confidence 9999999988887 45655554322 468999999999996421 11111110 1111 247
Q ss_pred EEEeeec-CCCCHHHHHHHHHHhhhcC
Q 030008 158 CFMISCK-NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~-~~~~v~~l~~~i~~~l~~~ 183 (184)
+++|||+ ++.|++++|+.|.+.+.++
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 9999998 6899999999999887653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=166.47 Aligned_cols=163 Identities=19% Similarity=0.304 Sum_probs=120.0
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc--ceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.++.++|+++|++|+|||||++++.+..+.....++. ......+..++..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999887765544433 3444556677888999999999998888888889999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--ccCc--ceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--ITDR--EVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~Sa~~~~~ 168 (184)
+|+|++++...... ..+..+.. .++|+++|+||+|+.+. ..++....+.... .... ..+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999886433322 22232221 46899999999999764 3333333332211 1111 26899999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887653
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-31 Score=183.62 Aligned_cols=158 Identities=26% Similarity=0.441 Sum_probs=117.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....++.+ .....+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999998777665555555 3344455444 67999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----HHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----KQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+... ..++.. ..+++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCC
Confidence 9999999999999988887775543 35799999999999864321 122222 234579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=166.16 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=108.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCC----------chhhHHhHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QPRFRSMWER 83 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G----------~~~~~~~~~~ 83 (184)
....++|+++|++|+|||||+++++++.+.....++.+... .....+ ..+.+||||| ++.+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 34679999999999999999999998764443333333211 112222 3699999999 6777777888
Q ss_pred HhccC---CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 84 YCRAV---SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 84 ~~~~~---~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|++++.++.... +...+.. ...|+++|+||+|+.+.....................++++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 87777 9999999999887665532 1112211 46899999999999865443322222221112234568999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++|.|++++++.|.+.+.+
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~~ 195 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMINR 195 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC
T ss_pred EEccCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=169.65 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCc------hhh---HHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~------~~~---~~~~~~~~ 85 (184)
.+.++|+++|++|+|||||+++++++.+.. ....|.......+......+.+|||||+ +.. ...+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 457999999999999999999999876632 2333555556666667789999999998 432 12234456
Q ss_pred ccCCEEEEEEeCCCcCcHHH--HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCc--ceeEEE
Q 030008 86 RAVSAIVYVVDAADPDNLSI--SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDR--EVCCFM 160 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 160 (184)
..+|++++|+|++++.++.. ...++..+... ....|+++|+||+|+.+..... ....... ...... .+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 78899999999999877642 23445544332 2478999999999997543221 1111110 111112 267999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++|.|++++++.|.+.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=171.75 Aligned_cols=161 Identities=18% Similarity=0.261 Sum_probs=111.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc----eeEEEEE-eCcEEEEEEecCCchhhHHhH---HHHhcc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG----FNMRKVT-KGNVTIKLWDLGGQPRFRSMW---ERYCRA 87 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~----~~~~~~~-~~~~~~~~~D~~G~~~~~~~~---~~~~~~ 87 (184)
.++.+||+++|++|+|||||++++.+.-. .....+.. .....+. .....+.+|||||++++.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 35789999999999999999998875422 22211111 1111222 455889999999999987766 888999
Q ss_pred CCEEEEEEeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhH----hCcCcccCccee
Q 030008 88 VSAIVYVVDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDE----MGLKSITDREVC 157 (184)
Q Consensus 88 ~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~----~~~~~~~~~~~~ 157 (184)
+|++++|+|++++ +++..+..|+..+... ..+.|+++|+||+|+.+... ...+... +........+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999999987 5566666666665322 24799999999999875321 1122111 111111245678
Q ss_pred EEEeeecCCCCHHHHHHHHHHhh
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
+++|||++ .|++++|+.|.+.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999998865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=162.50 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH----H----hHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----S----MWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~~~~~ 85 (184)
++..+|+++|++|+|||||++++.+.... ..+..|.......+..++..+.+|||||++... . ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999976532 233344555556677777889999999986431 1 122457
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998887653 34444443322 24689999999999853211 11122356799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=159.09 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|++|+|||||++++.+.... .....+.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987642 2233344455566677778999999999876 4556677889999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCCCC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNSTN 168 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|++++.+... .++...+.. ...|+++|+||+|+.+.. ++ ...+ . ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-~~~~----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LY-LGPL----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GG-CGGG----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--Hh-HHHH----H-hCCCCCeEEEecccCCC
Confidence 9999999998644322 233333322 468999999999997541 11 1111 1 1223 689999999999
Q ss_pred HHHHHHHHHHhhh
Q 030008 169 IDSVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~l~ 181 (184)
++++++.|.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999988763
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=168.94 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=110.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CCCCCCC-ccceeEEEEEeCc--EEEEEEecCCchh-hHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YSEDMIP-TVGFNMRKVTKGN--VTIKLWDLGGQPR-FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~-t~~~~~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++++.. +.....+ +.......+..++ ..+.+|||+|++. .......+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 467999999999999999999998532 2322222 1222233344433 5678999999765 34445567788999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|||+++.+++.....|+..+.......++|+++|+||+|+.+... .++. ..+ ....++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 999999999999998888776665433335789999999999864211 1111 111 112235799999999999
Q ss_pred HHHHHHHHHHhhh
Q 030008 169 IDSVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~l~ 181 (184)
|+++|+.|.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-30 Score=179.85 Aligned_cols=163 Identities=19% Similarity=0.279 Sum_probs=120.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.++.++|+++|++|+|||||+++++++.+.....+|.+.... . +......+.+|||||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 357899999999999999999999987776666666553322 2 2334466779999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---------HHHhHhCcCcccCcce-eEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ---------ALTDEMGLKSITDREV-CCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 161 (184)
+|+|+++++++.... .|+..+.... .++|+++|+||+|+.+..... ..............+. +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 999999999888876 4444443221 378999999999997532111 1111111122222333 78999
Q ss_pred eecCCCCHHHHHHHHHHhh
Q 030008 162 SCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l 180 (184)
||++|.|++++++.|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=163.92 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCcEEEEEEecCC----------chhhHHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGNVTIKLWDLGG----------QPRFRSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G----------~~~~~~~~~~~~ 85 (184)
...++|+++|++|+|||||++++++.... ...++.+... ......+..+.+||||| ++.+...+..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 45689999999999999999999987643 2233332111 11111234688999999 666777777777
Q ss_pred ccC---CEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 86 RAV---SAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 86 ~~~---~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+.+ +++++|+|+.+..+.... ..++.. .+.|+++|+||+|+.+....................+++++
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 666 999999999876443322 233332 26899999999999865544443333332222223467999
Q ss_pred eeecCCCCHHHHHHHHHHhhhcC
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+||++|.|++++++.|.+.+.++
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC--
T ss_pred EecCCCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999988753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=156.85 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+..++..+.+|||||++.+. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 358999999999999999999997665433333 3444455566677899999999987663 33445554 7
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+.+.+ ....|+..+.. .++|+++|+||+|+.... ..+++.+.. +++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 99999999998753 23345544433 368999999999985321 223333332 246999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++|+.|.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=169.91 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=121.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeC-cEEEEEEecCCchhh----------HHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF----------RSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~----------~~~~~ 82 (184)
++.-.|+++|++|+|||||+|++++..+. ..+.+|..........+ +..+.+|||||+... .....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45678999999999999999999987764 34455666666667777 899999999997443 35667
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+....+.... ....+++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~v 161 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPI 161 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEEC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEE
Confidence 788999999999999998877776655555433 468999999999997 4433333333332211 123469999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.|.+.+.+
T Consensus 162 SA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSCB
T ss_pred eCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999998865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=165.10 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC-----------chhhHHhHHHHhcc-
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA- 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+.....++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999998887666556555444444444 689999999 66777777777766
Q ss_pred CCEEEEEEeCCCcCcHHHH-HHHHHH--------HhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcce
Q 030008 88 VSAIVYVVDAADPDNLSIS-RSELHD--------LLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREV 156 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++|+++.+..++... ..|... +.......++|+++|+||+|+.+.. ..+++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 6666666666666666555 222221 1111112469999999999997543 1233444443311 11134
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++++||++|.|++++++.|.+.+.++
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=172.34 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=119.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEe-CcEEEEEEecCCchhh-----HHhHHHHhccC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|+|||||+++++++... ..+.+|.+.....+.. ++..+.+||+||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 5689999999999999999999876332 3577888888777764 5789999999999988 56778888999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHH---HHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH---HHhHhCcCcccCc---ceeEE
Q 030008 89 SAIVYVVDAADPDNLSISRSEL---HDLLNKPSLSGIPLLVLGNKIDKPGALSKQA---LTDEMGLKSITDR---EVCCF 159 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~ 159 (184)
|++++|+|+++++++..+..|. ..+... ..++|+++|+||+|+.+.....+ ............. .++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999988876553 333221 24699999999999975322220 1111111111222 36899
Q ss_pred EeeecCCCCHHHHHHHHHHhhh
Q 030008 160 MISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++||++ .|+.+++..+.+.+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 889999988877653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=167.49 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|++|+|||||+|++++..+. ..+.+|.......+..++.++.+|||||+.. +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999987764 2334455544455667789999999999765 4556667889
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875433 344433333221 3689999999999975422 22222222 2234689999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+++
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=164.96 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCccceeEEEEE-eCcEEEEEEecCCc----------hhhHHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY----SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------PRFRSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~----------~~~~~~~ 81 (184)
...++|+++|++|+|||||+|++++... ...+..|.......+. ..+..+.+|||||. +.+...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 4578999999999999999999998752 1223334444444444 44578999999993 4445666
Q ss_pred HHHhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc------
Q 030008 82 ERYCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT------ 152 (184)
Q Consensus 82 ~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------ 152 (184)
..++.. +|++++|+|+.++.+.. ...+...+.. .++|+++|+||+|+.+.................
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 666655 78899999998764322 2222223322 468999999999997543322222222111111
Q ss_pred CcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 153 DREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....+++++||++|.|++++++.|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 245689999999999999999999998765
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=171.29 Aligned_cols=166 Identities=18% Similarity=0.252 Sum_probs=122.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+..++|+++|++|+|||||+++++++.+...+.+|.+.... .+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 467799999999999999999999988887777777764433 334443 55669999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------CcccCcc-eeEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSITDRE-VCCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~ 161 (184)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.+.....+....... ......+ .++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999888876 4444443322 37899999999998643211111111000 0011122 379999
Q ss_pred eecCCCCHHHHHHHHHHhhhcC
Q 030008 162 SCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
||++|.|++++++.|.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=176.58 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc----------hhhHHhHH-H
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~-~ 83 (184)
..++|+++|++|+|||||+|++++... ......|.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 458999999999999999999997764 233445555555667778888999999997 55554433 4
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|++++.++... .++..+.. .++|+++|+||+|+.+... .++..+...........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77889999999999998877664 34443332 4699999999999976433 23333333333333345689999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=171.32 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhHH---hHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~ii~v 94 (184)
||+++|+.|+|||||++++.++-.+. ...+|++.....+. ...++.+|||+|++++.. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654332 35678887766653 458899999999999964 468899999999999
Q ss_pred EeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCccc----CcceeEEEeeec
Q 030008 95 VDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSIT----DREVCCFMISCK 164 (184)
Q Consensus 95 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
+|+++. +....+..++..+... .+++|+++|+||+|+.+...+ +++.......... ..+++|++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2222222223332221 247999999999999754321 2333333333333 257899999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+ .+|.+.|..|++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=157.82 Aligned_cols=160 Identities=20% Similarity=0.317 Sum_probs=119.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||++++++..+.....+|.+.. ...+..++ ..+.+||+||++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 457899999999999999999999888776666776533 34455444 56789999999988888888888999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+.+..++..+..|+..+... .....|+++|+||+|+.+... ..+.... ....++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 999999988887777776554332 224689999999999864322 2221111 11234578999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=153.56 Aligned_cols=151 Identities=23% Similarity=0.248 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++++..+.....+ |.......+..++..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997654322223 4445556677778999999999988763 34555554 4
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+.+ +.....++..+.. .+.|+++|+||+|+... ...+++.+.. +++++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEEEe
Confidence 899999999875 4445555555543 46899999999998532 1233333333 246999999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++.|++++++.|.+.+.++
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=160.94 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=111.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--c
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||+|+|++..+.. .+..|.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 357899999999999999999999766533 234455556666777789999999999876542 234444 5
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|+++.++.. .++..+.. .++|+++|+||+|+... ....++.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 799999999999875432 34444433 36999999999998532 1233444433 35799999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.|.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=166.95 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH----------hHHHHh--
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC-- 85 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||+|++++..... .+..|.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 479999999999999999999775433 234455566677777888999999999876543 445555
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEEEe
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.++|++++|+|+++.++...+.. .+.. .++|+++|+||+|+.+.. ....+...+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 88999999999998654333332 2222 368999999999985432 223333333 3579999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||++|.|++++++.|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=164.17 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=110.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccceeEEEEEeCcEEEEEEecCCchhhH----------HhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 85 (184)
+.++|+++|++|||||||+|++++...... +..|.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998765332 3345556666677777899999999976654 2223333
Q ss_pred --ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEE
Q 030008 86 --RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 86 --~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|+++.+....+..++... ++|+++|+||+|+.+.. ..+.+.+.+ +++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEE
Confidence 6899999999999865444444443332 69999999999986432 223333333 35799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999987754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=167.83 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=108.2
Q ss_pred cceeEEEEEcCC---------CCChHHHHHHHHc---CCCCCCCCCcc-ceeE--E----------------EEEeCcEE
Q 030008 17 KQEMELSLIGLQ---------NAGKTSLVNVVAT---GGYSEDMIPTV-GFNM--R----------------KVTKGNVT 65 (184)
Q Consensus 17 ~~~~~v~i~G~~---------~sGKStli~~l~~---~~~~~~~~~t~-~~~~--~----------------~~~~~~~~ 65 (184)
...+||+++|.+ |+|||||+++|++ ..+.....+|. +..+ . .++.....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 44544444443 2110 0 02334577
Q ss_pred EEEEe-----------------------cCCchhhHHhHHHHhc---------------------cCCEEEEEEeCCCc-
Q 030008 66 IKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYVVDAADP- 100 (184)
Q Consensus 66 ~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~- 100 (184)
+.+|| ++|++++...+..++. ++|++++|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 89999 4444444444444444 79999999999998
Q ss_pred -CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 101 -DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++..+..|+..+.......++|+++|+||+|+.+....++..... ....+++++++||++|.|++++|+.|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~----~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA----LSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH----HTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH----HhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8999988888776543222469999999999996432221111111 11124579999999999999999999987
Q ss_pred hh
Q 030008 180 SK 181 (184)
Q Consensus 180 l~ 181 (184)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-26 Score=179.26 Aligned_cols=157 Identities=24% Similarity=0.334 Sum_probs=106.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE------------eCcEEEEEEecCCchhhHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT------------KGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~~~~~~~D~~G~~~~~~~~~~~ 84 (184)
.+.+||+++|++|+|||||++++++..+.....+|.+....... .....+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45799999999999999999999998887777788876655321 225789999999999998888889
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.++++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+.+... .++...... ..+++++++|
T Consensus 119 l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEECC
T ss_pred ccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEEe
Confidence 9999999999999876543 44444443322 3589999999999975322 222322221 2234699999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999987653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-25 Score=161.77 Aligned_cols=148 Identities=26% Similarity=0.288 Sum_probs=106.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||+|++++...... +..|.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997654333 23344444444444 6679999999988764 44555554 6
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.++. ..+...+.. .++|+++|+||+|+... .....+.+.+ +++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence 9999999999886433 233333332 36999999999998532 1223333333 357999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++++.|.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=171.84 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=112.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC----------chhhHHhHH-H
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~-~ 83 (184)
..++|+++|.+|+|||||++++++... ......|.......+..++..+.+||||| ++.+..... .
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 468999999999999999999996542 23344455555566777788999999999 677766544 4
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|++++..... ..++..+.. .++|+++|+||+|+.+... .++..+...........++++++
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 7789999999999998643222 222222222 4699999999999975432 23333333333223345689999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999987754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=170.50 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH--------HH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE--------RY 84 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------~~ 84 (184)
.++.++|+++|.+|+|||||+|+|++... ...+..|.......+..++..+.+|||||+..+...+. .+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 45679999999999999999999997642 23344566666677778889999999999877654433 35
Q ss_pred hccCCEEEEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 85 CRAVSAIVYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+..+|++++|+|++++.++... ..++..+ .++|+++|+||+|+.+...... +.+... ...+++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEEC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEE
Confidence 7889999999999998877532 2333322 2689999999999975533221 111110 11469999
Q ss_pred eecCCCCHHHHHHHHHHhhh
Q 030008 162 SCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~ 181 (184)
||++|.|++++++.|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999998875
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=167.56 Aligned_cols=152 Identities=14% Similarity=0.253 Sum_probs=115.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCccceeEEEEEeCcEEEEEEecCCch-hhH--------HhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~ 84 (184)
+..++|+++|.+|+|||||+|++++.. ....+.+|.......+..++..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 355899999999999999999999765 34455667777777788888999999999987 442 234567
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.++.... .+ ..+ ..+|+++|+||+|+.+....+++..... ...+++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 88999999999999887765532 22 222 2689999999999975434333333211 22469999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 030008 165 NSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~ 181 (184)
+|.|++++++.|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-25 Score=164.01 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|.+|+|||||++++++... ...+.+|.......+...+ ..+.+|||||... ....+...+..++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 4689999999999999999997653 3455677777777777664 7899999999543 2233444456799
Q ss_pred EEEEEEeCCC---cCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 90 AIVYVVDAAD---PDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 90 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++ .+++.....+..++..... ...+|+++|+||+|+.+..+ .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999988 6778777777766654421 25789999999999974321 1222232221 1468999999
Q ss_pred CCCCHHHHHHHHHHhhhcC
Q 030008 165 NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~~ 183 (184)
+++|++++++.|.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999999988754
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=163.50 Aligned_cols=164 Identities=19% Similarity=0.185 Sum_probs=113.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC---Cccc----------e---------eEEEEEeCcEEEEEEecCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI---PTVG----------F---------NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~---~t~~----------~---------~~~~~~~~~~~~~~~D~~G 73 (184)
.++.++|+++|++|+|||||+++|++........ .+.+ . ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3578999999999999999999999643322100 0000 0 0000011226899999999
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC--cc
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK--SI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~--~~ 151 (184)
++.+.......+..+|++++|+|+.++.++.....++..+... ...|+++|+||+|+.+.....+..+.+... ..
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887666666665544322 235899999999998643322222222111 11
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....++++++||++|.|++++++.|.+.+..
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 1235689999999999999999999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=151.13 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=119.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||++++.+..+.....+|.+... ..+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3468999999999999999999999888777777777443 4455554 45667999999988888888888999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+.+..++..+..|+..+... .....|+++|+||+|+.+... ..+....+ ....++.++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence 999999988887776666554322 124689999999999864221 11111111 112345789999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=166.29 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh---------hHHhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (184)
.+|+++|.||+|||||+|+++++.. ...+..|....+..+...+..+.+|||||++. +..++..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 3799999999999999999997763 33445566666777888888999999999653 35567778999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.... ..+....+. ..+. +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 999999999988654432 222233222 368999999999985320 111101111 1122 5799999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988753
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-24 Score=157.27 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=106.7
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|+|.....+..++..+.+||++|+++++..|..++++++++++|+|++ +.+++.....++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 457788888888889999999999999999999999999999999999654 6677888888899888776
Q ss_pred CCCCCcEEEEeeCCCCCCC------------------CCHHHHHhH----h-CcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 118 SLSGIPLLVLGNKIDKPGA------------------LSKQALTDE----M-GLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
...++|+++++||+|+.+. ...++..+. + .........+.+++|||+++.||+.+|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998531 122222211 1 1111234567889999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.+.+.+.++
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999887654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=156.13 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=110.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--cc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RA 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 87 (184)
+.++|+++|++|||||||+|++++..+..... .|.......+...+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 35799999999999999999999776543333 344455566777888999999999776543 344454 67
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.+ ....++..+... ..+|+++|+||+|+.+. .....+.+.+ +++++++||
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999999853 223333444332 23899999999997431 1234444444 347999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=157.29 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+.... ..+..|.......+..++..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 35689999999999999999999976642 23456666777777777889999999996432 12222344
Q ss_pred ccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 86 RAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|++++. ++.....++..+.... .++|+++|+||+|+.+....++..... ....++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 5666666666655432 168999999999997532222222211 123457999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|+|++++++.|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=161.86 Aligned_cols=159 Identities=19% Similarity=0.111 Sum_probs=107.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh------------HHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------------WER 83 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------------~~~ 83 (184)
.++|+++|++|||||||+|++++... ...+..|.......+..++..+.+|||||..+.... ...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 48999999999999999999997653 334445555556667777888999999997543221 234
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+.++.+.... .+...+.. .++|+++|+||+|+.+... .+++..............+++++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 66789999999999987655442 22222222 3689999999999975322 33333332222222345679999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=165.44 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=102.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHH--------Hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER--------YC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~~ 85 (184)
++.++|+++|++|+|||||+|+|++... ...+..|.......+..++..+.+|||||.......+.. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999997542 233444555555566778889999999997665443332 56
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 88999999999998765544 2333333 2 36999999999997542211 1111 11345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=160.77 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=104.8
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 118 (184)
.+|++.....+..++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.....++..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 456777777788889999999999999999999999999999999999998 4568888889988887655
Q ss_pred CCCCcEEEEeeCCCCCCC-----------------CCHHHHHhHhC-----cCcc-cCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGA-----------------LSKQALTDEMG-----LKSI-TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||+|+.+. ...++...... .... ....+.+++|||+++.||+++|+.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 567999999999998421 22222222211 1100 134678999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 338 v~~~i~~ 344 (353)
T 1cip_A 338 VTDVIIK 344 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-25 Score=156.26 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=93.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc----C
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----V 88 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|+|||||++++.+..+.. ...++.+.. .....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 3567999999999999999999999877643 233333222 245679999999999998888888877 8
Q ss_pred CEEEEEEeCC-CcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCCC
Q 030008 89 SAIVYVVDAA-DPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 89 ~~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~ 138 (184)
+++++|+|++ +++++.....++..++... ...++|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8888888888887776432 225799999999999976554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=166.04 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch--------hhHHhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|+|++.... ..+..|....+..+...+..+.+|||||++ .+..++..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976543 233344445555566667789999999985 5667778889999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.+... + .. ... ..+. +++++||.+|.
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~~-~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----IY-DFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------C----CC-SSG-GGSSCCCEECBTTTTB
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--h----HH-HHH-HcCCCCeEEEeCcCCC
Confidence 99999999998766543 344454443 4689999999999864311 0 01 111 1122 58999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.+.+.+.+
T Consensus 151 gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKN 165 (436)
T ss_dssp THHHHHHHHHHTGGG
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999988863
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=159.67 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=102.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCC--ccceeEEEEEe---------------C--------cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIP--TVGFNMRKVTK---------------G--------NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (184)
++.++|+++|++++|||||+++|.+... .....+ |+...+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4679999999999999999999985432 222222 55443332211 1 268999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHh
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTD 144 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~ 144 (184)
|||||++.+.......+..+|++++|+|++++.......+.+..+... ...|+++|+||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999999764222222333222111 2358999999999976432 122333
Q ss_pred HhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..... .....+++++||++|+|++++++.|.+.+.
T Consensus 163 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 123568999999999999999999998765
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=163.72 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=110.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC----C---C--CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG----Y---S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~----~---~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (184)
+.++|+++|++++|||||+++|++.. . . .....|+...+..+..++..+.+|||||++.+.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57999999999999999999999765 1 1 1223455555555667788999999999999998899999999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cCcceeEEEeeecC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TDREVCCFMISCKN 165 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~ 165 (184)
|++++|+|++++.... ..+.+..+ .. .++|+++|+||+|+.+....++..+++..... .....+++++||++
T Consensus 98 D~~ilVvda~~g~~~q-t~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQ-TGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCccHH-HHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 9999999998753211 22222222 11 35888999999999853222222222211110 11256899999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030008 166 STNIDSVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~ 181 (184)
|+|++++++.|.+.+.
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=160.19 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEe------------------C-----cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTK------------------G-----NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~------------------~-----~~~~~~ 68 (184)
++.++|+++|++++|||||+++|++... ... ...|+...+..... + ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 5679999999999999999999985432 212 12255544333221 0 268999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHh
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTD 144 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~ 144 (184)
|||||++.+.......+..+|++++|+|++++.......+.+..+... ...|+++|+||+|+.+.... +++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999999753222222222222111 23689999999999754321 12222
Q ss_pred HhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+... .....+++++||++|.|++++++.|.+.++
T Consensus 165 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 123568999999999999999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=153.93 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch-hhHHh--------HHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFRSM--------WERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~~~--------~~~~~ 85 (184)
+..+|+++|++|+|||||+|++++.... ..+.+|.......+..++..+.++||||+. ..... ...++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4558999999999999999999987652 334445544455566778899999999987 33222 23446
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.+|++++|+|+.+ +.....++...+.. .+.|+++|+||+|+.. .....+....+... .....++++||+
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA~ 157 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISAE 157 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCTT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEECC
Confidence 78899999999976 22333344433332 4689999999999975 11111222222111 111268999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|...+++
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999987654
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=165.75 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCc-EEEEEEecCCchhhHH-------hHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRS-------MWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~-------~~~~~~ 85 (184)
.+.++|+++|++|+|||||+++++++.+. .....|.......+...+ ..+.+|||||+..+.. ....++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 45689999999999999999999977652 334456666666666555 3899999999876532 256678
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|+...+ ....++..+... ++|+++|+||+|+.+.... +..+.+.. ..+++++++||++
T Consensus 112 ~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSAkt 179 (423)
T 3qq5_A 112 YRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSALQ 179 (423)
T ss_dssp TSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSSCC
T ss_pred hcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEECCC
Confidence 8999999999993332 233444444332 6999999999999765443 22333322 2345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 180 g~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTSTTTHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998843
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=155.08 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|+|.....+..++..+.+||++|+++++..|..++++++++++|+|++ +.+++.....++..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345677777778888899999999999999999999999999999999998 6778888888998888766
Q ss_pred CCCCCcEEEEeeCCCCCCC-----------------CCHHHH----HhHh------C-cCcccC-----------cceeE
Q 030008 118 SLSGIPLLVLGNKIDKPGA-----------------LSKQAL----TDEM------G-LKSITD-----------REVCC 158 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~-----------------~~~~~~----~~~~------~-~~~~~~-----------~~~~~ 158 (184)
...++|+++++||+|+... ...++. ...+ . ...... ..+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 5578999999999998531 011111 1111 1 111111 35789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhh
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++|||++..||+.+|+.+.+.+.
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHH
Confidence 99999999999999999888764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=159.18 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=105.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.... ......|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 5679999999999999999999964311 0112345555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 136 (184)
..+.+|||||++++.......+..+|++++|+|+.++.. + ....+.+..... .++| +++|+||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 899999999999999999999999999999999998642 1 122222222211 2466 9999999998642
Q ss_pred CC----HHHHHhHhC----cCccc-CcceeEEEeeecCCCCHHHHHH
Q 030008 137 LS----KQALTDEMG----LKSIT-DREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 137 ~~----~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.. .++....+. ..... ...++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 122222211 11111 1256899999999999999654
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=154.83 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=95.4
Q ss_pred CccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCCC
Q 030008 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....+..++..+.+|||+|++.++..+..++++++++|+|+|+++ .+++.....++..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 34555566677788999999999999999999999999999999999998 67888888899988876555
Q ss_pred CCCcEEEEeeCCCCCCC------------------CCHHHHHhHh-----CcCccc-CcceeEEEeeecCCCCHHHHHHH
Q 030008 120 SGIPLLVLGNKIDKPGA------------------LSKQALTDEM-----GLKSIT-DREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 120 ~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.++|+|+++||+|+.+. ...++..... ...... ...+.+++|||+++.||+++|+.
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 67999999999998521 2233322211 111111 34567999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=153.42 Aligned_cols=161 Identities=22% Similarity=0.261 Sum_probs=104.4
Q ss_pred eeE-EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCc---------hhhHHhHHHHhc
Q 030008 19 EME-LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---------PRFRSMWERYCR 86 (184)
Q Consensus 19 ~~~-v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~---------~~~~~~~~~~~~ 86 (184)
.++ |+++|.+|+|||||+|++++.... ..+.+|.+.....+...+..+.+|||||. +.+... ...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 455 999999999999999999977652 34567777777778888889999999996 223332 23578
Q ss_pred cCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--HHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ--ALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|++++. .......+ ..++........|+++|+||+|+.+....+ +....+.... .....+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCcEEEEE
Confidence 899999999998875 33332222 222222222468999999999997543111 1110000000 01234689999
Q ss_pred ecCCCCHHHHHHHHHHhhhc
Q 030008 163 CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~ 182 (184)
|+++.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999887654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=164.15 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++|+|||||+++|++... ......|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 36789999999999999999999975411 011233555566667778
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHH------HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSI------SRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
...+.+|||||++++......++..+|++++|+|+++++.+.. ..+.+. +.... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc--CCCcEEEEEECcCcccc
Confidence 8899999999999999999999999999999999998753321 122222 21111 23579999999999753
Q ss_pred CC--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 137 LS--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 137 ~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. .++...... ........++++++||++|+|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 21 122222221 111122357899999999999985
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=158.76 Aligned_cols=115 Identities=22% Similarity=0.207 Sum_probs=88.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC------------------CC------CCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY------------------SE------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~------------------~~------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++|+|||||+++|+.... .. ....|.......+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 4668999999999999999999962110 00 12334555666777888999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+...+..+++.+|++++|+|+.++....... .+..... .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876555443 3333322 36899999999999654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=160.72 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC--------chhhHHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QPRFRSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~~~ 87 (184)
..+|+++|.+|||||||+|+|++.... ..+..|...........+..+.+||||| ++.+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 469999999999999999999976543 2333444444555556677899999999 77778888889999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+.++.+ ....++...+.. .++|+++|+||+|+.+.. ....+ ...... ..++++||.+|.
T Consensus 103 ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e----~~~lg~-~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYD----FYSLGF-GEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CC----SGGGSS-SSEEECCTTTCT
T ss_pred CCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHH----HHHcCC-CceEEeeccccc
Confidence 999999999887533 334455555544 579999999999986321 11111 111111 136799999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.+.+.+.+
T Consensus 171 gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKN 185 (456)
T ss_dssp THHHHHHHHHTTGGG
T ss_pred chHHHHHHHHhhccc
Confidence 999999999887753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=144.26 Aligned_cols=125 Identities=25% Similarity=0.391 Sum_probs=91.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc----CC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----VS 89 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~~ 89 (184)
.+.++|+++|++|||||||++++.+..+... ..++... ......+.+|||||++.+...+..++.. +|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 5678999999999999999999998765431 2222221 1245679999999998886666666655 89
Q ss_pred EEEEEEeCC-CcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 90 AIVYVVDAA-DPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 90 ~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
++++|+|++ +.+++.....++..++... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 999999999 7888888878777765432 22469999999999998766655554444
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=156.47 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=109.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-----C----------CCCccceeEEEEEe-----CcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-----D----------MIPTVGFNMRKVTK-----GNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-----~----------~~~t~~~~~~~~~~-----~~~~~~~~D~~G~ 74 (184)
++..+|+++|+.++|||||+++|+.. .... . ...|+......+.+ ..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999852 1110 0 11122222222322 2378999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
..+...+...+..+|++++|+|+.++........|..... .++|+++|+||+|+.... .++....+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999999999999999999999999877666655544432 368999999999997543 333322222111 111
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+++++||++|.|++++++.|.+.++.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2258999999999999999999988764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=146.05 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhhcc---cceeEEEEEcCCCCChHHHHHHHHcCCCCCC------CCCc----------------------
Q 030008 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVVATGGYSED------MIPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~v~i~G~~~sGKStli~~l~~~~~~~~------~~~t---------------------- 51 (184)
+++++.+.++.... ...++|+++|.+|+|||||+|++++..+.+. ..|+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 44566666655432 2457999999999999999999998776311 1121
Q ss_pred --cc-------------------e----eEEEEEe-CcEEEEEEecCCch-------------hhHHhHHHHhccCCEEE
Q 030008 52 --VG-------------------F----NMRKVTK-GNVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 --~~-------------------~----~~~~~~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii 92 (184)
.. . ....+.. ...++.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 00 0 0000111 13679999999953 34566777888888765
Q ss_pred -EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 -YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..+......++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccc
Confidence 799998764333322333333 22 4689999999999975433 22222110 01111123478899999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999988763
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=153.91 Aligned_cols=146 Identities=11% Similarity=0.055 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ ....|++.....+...+..+.+|||||++++.......+..+|++++|+| ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC
Confidence 99999999999999999998 34456666667777778899999999999998888888899999999999 543
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcE-EEEee-CCCCCCCCCHH----HHHhHhCcCcccCcceeEEE--eeecC---CCCH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPL-LVLGN-KIDKPGALSKQ----ALTDEMGLKSITDREVCCFM--ISCKN---STNI 169 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v 169 (184)
......+++..+.. .++|. ++++| |+|+ +....+ ++.+..... ....+++++ +||++ +.|+
T Consensus 96 -~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 96 -LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCH
Confidence 34444444443322 24676 88999 9999 432222 222222111 113468999 99999 9999
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++++.|.+.++
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988765
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=157.69 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=105.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC--CCC-----C----------CCCccceeEEEEEeC-----cEEEEEEecCCch
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG--YSE-----D----------MIPTVGFNMRKVTKG-----NVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~--~~~-----~----------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~ 75 (184)
+-.+|+++|++++|||||+++|+... ... . ...|+......+.+. .+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998521 110 0 111222222233332 4789999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcc
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDRE 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+...+...+..+|++++|+|+.++........|..... .++|+++|+||+|+.+.. .++....+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 999999999999999999999998876666555544432 368999999999997543 222222221111 1111
Q ss_pred eeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 156 VCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+++++||++|.|++++++.|.+.++.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 248999999999999999999988764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=151.52 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=102.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCC--------------------------------CCCccceeEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---SED--------------------------------MIPTVGFNMRKVT 60 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~--------------------------------~~~t~~~~~~~~~ 60 (184)
.++.++|+++|++++|||||+++|++... ... ...|+...+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35669999999999999999999985431 000 1123333444566
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 138 (184)
.....+.+|||||++.+......++..+|++++|+|++++.... ...++...... ...|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 67789999999999999988888999999999999999875322 23333322211 1246999999999975321
Q ss_pred HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 139 KQALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 139 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.++...... ........++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 111222211 1111123468999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=143.20 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=105.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-CCCCCC---CccceeEEEEEeCcEEEEEEecCCchhh-----------HHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQPRF-----------RSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 81 (184)
.+.++|+++|++|+|||||++++++.. +..... .|.......+...+..+.+|||||+... ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999766 332222 3445555666778889999999996543 2223
Q ss_pred HHHhccCCEEEEEEeCCCcCcH-HHHHHHHHHHhcCCCCCCCcEEEEee-CCCCCCCCCHHH------------HHhHhC
Q 030008 82 ERYCRAVSAIVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGN-KIDKPGALSKQA------------LTDEMG 147 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~n-K~D~~~~~~~~~------------~~~~~~ 147 (184)
..+++.+|++++|+|+.+.... .....++...... ....|.++|+| |+|+... .... +.....
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 3467889999999999863322 1223344444321 11356677776 9999743 2222 222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.. ...+..+++||++|.|++++++.|.+.+..
T Consensus 177 ~~---~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GR---ICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TC---EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ce---EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 11 000111789999999999999999998765
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=153.34 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=111.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--------CCCC-----------CCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
++.++|+++|++++|||||+++|++. .+.. ....|.......+......+.+|||||++.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999862 1110 1122444444556666789999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALS-KQ----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|++++... ....++..+.. .++| +++|+||+|+.+... .+ ++.+.......
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888999999999999999987533 33444443322 2577 899999999974211 11 11111111111
Q ss_pred cCcceeEEEeeecCCCC------------------HHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNSTN------------------IDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~l~ 181 (184)
.....+++++||++|.| ++++++.|.+.++
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 12246899999999987 8889988887664
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=152.01 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=109.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC-------CCC-----------CCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG-------YSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~-------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
+.++|+++|++++|||||+++|++.. +.. ....|+......+......+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998631 110 112244444444556678999999999999988
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcccC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 153 (184)
.....+..+|++++|+|++++.... ..+.+..+.. .++| +++|+||+|+.+.... + ++.+.........
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8888999999999999999865333 2333332222 2577 7899999999742111 1 1111211111112
Q ss_pred cceeEEEeeecCCCC----------HHHHHHHHHHhhh
Q 030008 154 REVCCFMISCKNSTN----------IDSVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~l~ 181 (184)
..++++++||++|.| ++++++.|.+.++
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246899999999764 8999999988765
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-24 Score=167.71 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||+++|.+..+.....+ |.......+.. .+..+.+|||||++.+..++..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4568899999999999999999986554322222 22232333333 34579999999999999988889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCc-ccCcceeEEEeeecCCCCHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKS-ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+.++....... .+..... .++|+++|+||+|+.+... .......+.... ......+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99999876444432 3333322 3689999999999864321 111111221111 11234689999999999999
Q ss_pred HHHHHHHHhhh
Q 030008 171 SVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~l~ 181 (184)
++++.|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=157.17 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=99.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|+......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999854 2211 12345555555677778
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH-------HHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS-------RSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
..+.+|||||++++......++..+|++++|+|+.+ .+++.. .+.+...... ...|+++|+||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 899999999999999999999999999999999998 445432 2222211111 12468999999999763
Q ss_pred C-CH---HHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 137 L-SK---QALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 137 ~-~~---~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
. .. +....+.. ........++++++||++|+|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 11 11122211 1111122468999999999999743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=144.88 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=88.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC-CC-------CCccceeEEEEE--eCc--EEEEEEecCCch-------hhH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE-DM-------IPTVGFNMRKVT--KGN--VTIKLWDLGGQP-------RFR 78 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~-------~~t~~~~~~~~~--~~~--~~~~~~D~~G~~-------~~~ 78 (184)
..++|+++|.+|+|||||+|+++...... .. .+|++....... .++ ..+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999988655432 22 456665544433 222 589999999962 233
Q ss_pred HhH-------HHHhcc-------------CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 79 SMW-------ERYCRA-------------VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 79 ~~~-------~~~~~~-------------~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
... ..++.. +|+++++++..... +......+...+.. .+|+++|+||+|+....+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 332 334433 67899999876532 22222223333332 699999999999975433
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.......+... ....+++++++||.+++|++++++.|.+.++
T Consensus 162 ~~~~~~~i~~~-l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 162 CQQFKKQIMKE-IQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33332222111 1223556889999999999999999987653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=150.21 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=98.5
Q ss_pred cceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCCCCC
Q 030008 52 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPSLSG 121 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
++.....+..++..+.+|||+|+++++..+..++++++++++|+|+++ .+++.....|+..+.......+
T Consensus 205 iGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~ 284 (402)
T 1azs_C 205 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 284 (402)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS
T ss_pred eeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC
Confidence 334444556677899999999999999999999999999999999998 8899999999999887655578
Q ss_pred CcEEEEeeCCCCCCC-----C------------------------C---HHHHHhH----hCcCc----ccCcceeEEEe
Q 030008 122 IPLLVLGNKIDKPGA-----L------------------------S---KQALTDE----MGLKS----ITDREVCCFMI 161 (184)
Q Consensus 122 ~~~iiv~nK~D~~~~-----~------------------------~---~~~~~~~----~~~~~----~~~~~~~~~~~ 161 (184)
+|+++|+||+|+... . . .++.... +.... .....+.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 999999999997421 0 0 0111000 00000 01134678899
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||+++.||+++|+.+.+.+.+
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHH
Confidence 999999999999998887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=140.87 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=99.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEEeCcEEEEEEecCCc-----------hhhHHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQ-----------PRFRSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~~ 81 (184)
...++|+++|++|+|||||+|++++....... ..|.......+...+..+.+|||||. ..+...+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999987764433 23445556667778889999999993 2344445
Q ss_pred HHHhccCCEEEEEEeCCCcCcHH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---cCcccCccee
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLS-ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---LKSITDREVC 157 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~ 157 (184)
....+.+|++++|+|+++..... ....++...+... ...|+++|+||+|+.+....+++..... .......+..
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence 55567789999999997654321 1122222222110 2369999999999875433321111110 0001111224
Q ss_pred EEEeeecC-----CCCHHHHHHHHHHhhhc
Q 030008 158 CFMISCKN-----STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~-----~~~v~~l~~~i~~~l~~ 182 (184)
++.+++.. ..++.++++.+...+.+
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 66666553 36899999998887754
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-22 Score=151.07 Aligned_cols=121 Identities=14% Similarity=0.240 Sum_probs=89.8
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
+...+.+|||+|+++++..+..++++++++++|+|++ +.+++.....++..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 678899998999888776544679999999999
Q ss_pred CCCCCC----C-------------------HHHHHhHhCcCc------c-----cCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 132 DKPGAL----S-------------------KQALTDEMGLKS------I-----TDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 132 D~~~~~----~-------------------~~~~~~~~~~~~------~-----~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
|+.+.. . .++......... . ....+.+++|||+++.||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 984210 0 011111101000 0 02345578999999999999999998
Q ss_pred Hhhhc
Q 030008 178 KHSKS 182 (184)
Q Consensus 178 ~~l~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=160.79 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC---------------------------------CCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED---------------------------------MIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++|+|||||+++|++...... ...|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4679999999999999999999985532110 2335555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cH---HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NL---SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
..+.+|||||++++.......+..+|++++|+|++++. ++ ......+... ... ...|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 89999999999999998989999999999999998742 11 1122222222 111 224699999999997532
Q ss_pred C--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 138 S--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 138 ~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
. .++...... ........++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 111122211 1111223568999999999999865
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-21 Score=149.87 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC------------------------CCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE------------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~------------------------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
++..+|+++|++|+|||||+++|+...... ....|+......+...+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531100 11112223344567788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+......++..+|++++|+|+.++.... ....+... ...++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 99999888889999999999999998864322 22222222 2247899999999999754
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-22 Score=157.68 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEE----------------eCcEEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~ 77 (184)
+.++|+++|++++|||||++++.+...... ..++++....... .....+.+|||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 568999999999999999999986543321 2233443322211 11236999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--------------H
Q 030008 78 RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--------------Q 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--------------~ 140 (184)
...+...+..+|++++|+|++++ +++..+. .+.. .++|+++|+||+|+...... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 88888888899999999999984 3333222 2221 46899999999999642110 0
Q ss_pred -----------HHHhHhCcCcc----------cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 -----------ALTDEMGLKSI----------TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++...+..... .....+++++||++|.|++++++.|...++
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111000 123468999999999999999999987764
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-22 Score=159.12 Aligned_cols=157 Identities=25% Similarity=0.289 Sum_probs=106.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
++..+|+++|++++|||||++++.+..+.... ..|.......+..++..+.+|||||++.+...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 45679999999999999999999865433222 1222222233444566899999999999988888888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--cc--CcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--IT--DREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++..... ...+..... .++|+++++||+|+.+... +.+...+.... .. ....+++++||++|.|++
T Consensus 82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987532211 122222211 3689999999999964321 11111111110 01 123689999999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-22 Score=157.43 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=90.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcC--CCC-------------------------------CCCCCccceeEEEEEe
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATG--GYS-------------------------------EDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~ 61 (184)
..++.++|+++|++++|||||+++|+.. .+. .....|+......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3467799999999999999999999741 110 0123455554455666
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 134 (184)
++..+.+|||||++.|.......+..+|++++|+|++++. +|. ...+.+..... .++| +++|+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 7889999999999999988888899999999999999862 221 12222222211 3566 99999999996
Q ss_pred CCC-CH---HHHHhHhCcCc-----cc-CcceeEEEeeecCCCCHHHHH
Q 030008 135 GAL-SK---QALTDEMGLKS-----IT-DREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 135 ~~~-~~---~~~~~~~~~~~-----~~-~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+.. .. ++...+..... .. ...++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 11 11111111111 11 125689999999999998754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=158.03 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=108.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-------CC-----------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.. +. .....|+......+......+.+|||||++++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 00 011123333334455667899999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|++++... ...+++..+.. .++| +|+|+||+|+.+.... + ++..........
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888899999999999999986432 23333333221 2577 7899999999752111 1 111112111111
Q ss_pred CcceeEEEeeecCC--------CCHHHHHHHHHHhhh
Q 030008 153 DREVCCFMISCKNS--------TNIDSVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~l~ 181 (184)
...++++++||++| .|++++++.|.+.++
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 479999999988664
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=139.04 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhhccc--ceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCC-Cccce---eEEE-----------------
Q 030008 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVVATGGY-SEDMI-PTVGF---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~-~t~~~---~~~~----------------- 58 (184)
+++++.+.+...... ...+|+++|++|+|||||+|++++..+ +.... .|... ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 345555555444322 457999999999999999999998765 22110 11110 0000
Q ss_pred ----------------------------------------EEeCcEEEEEEecCCchh-------------hHHhHHHHh
Q 030008 59 ----------------------------------------VTKGNVTIKLWDLGGQPR-------------FRSMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~ 85 (184)
......++.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111235799999999653 455677788
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..+|++++|+|+.+..........+...+.. .+.|+++|+||+|+.+... ..+..... .........++..+|+.
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~ 241 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQE 241 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChh
Confidence 9999999999984332110111112222222 4689999999999975433 12222110 01111222344455666
Q ss_pred C---CCCHHHHHHHHHHhhhc
Q 030008 165 N---STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~---~~~v~~l~~~i~~~l~~ 182 (184)
+ +.|++++++.+...+..
T Consensus 242 ~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 242 DIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHHHHHHHHhC
Confidence 6 78999999998887754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=132.09 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=97.6
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchh----------hHHhH
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPR----------FRSMW 81 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~----------~~~~~ 81 (184)
....+..+|+++|++|||||||++++++..+.....++.+... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3456788999999999999999999987653223333433221 2222222 578999999732 23333
Q ss_pred HHHh---ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhHhCcCcccCc
Q 030008 82 ERYC---RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA----LTDEMGLKSITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~ 154 (184)
..++ ..++++++++|+.++.+.... .+...+.. ...|+++|.||+|+.+....+. ...... ....
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---~~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL---AFNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH---hcCC
Confidence 3444 467899999999887654321 11222211 3689999999999875432221 111111 1122
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.++++||+++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999887654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-22 Score=153.64 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|++. .+.. ....|+......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999853 1110 12345666666777788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 136 (184)
..+.+|||||++.+.......+..+|++++|+|+.++. +|. .....+..... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence 89999999999999999999999999999999998752 111 22222222211 2455 9999999999742
Q ss_pred CC--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 137 LS--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 137 ~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. .++...+.. ........++++++||++|.|+++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 11 112222221 111111246899999999999874
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-23 Score=165.44 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++++|||||+++|+... . ......|+......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3567899999999999999999996311 0 001223444445556666
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cH---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NL---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 135 (184)
+..+.+|||||++.+.......+..+|++|+|+|++++. .+ ......+..... .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 788999999999998777777788999999999998642 11 112222222211 2454 999999999975
Q ss_pred CCC--H----HHHHhHh-CcCcccCcceeEEEeeecCCCCHH--------------HHHHHHHHhhh
Q 030008 136 ALS--K----QALTDEM-GLKSITDREVCCFMISCKNSTNID--------------SVIDWLVKHSK 181 (184)
Q Consensus 136 ~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~l~ 181 (184)
... . .++...+ .........++++++||++|.|++ .|++.|...+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 321 1 2222222 222223345689999999999998 78888876543
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=147.57 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=86.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CC------CC------------CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
++..+|+++|++|+|||||+++++.. .+ .. ....|+......+...+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 46789999999999999999999831 11 00 233455555666777889999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+.++........|. .... .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999999887665544333 2322 36899999999999754
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=149.08 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=106.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVG-FN----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 59 (184)
.+..++|+++|.+|+|||||+|+|++..... ...|+.. +. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4578999999999999999999999776422 2223221 00 0000
Q ss_pred --------------------EeCc----EEEEEEecCCchh---hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHH
Q 030008 60 --------------------TKGN----VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHD 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~ 112 (184)
.... ..+.+|||||... ....+..+++.+|++++|+|++++.+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999654 345566788999999999999988766655433322
Q ss_pred HhcCCCCCCCcEEEEeeCCCCCCCC-----CHHH-------HHh----HhCcCcc----cCcceeEEEeeec--------
Q 030008 113 LLNKPSLSGIPLLVLGNKIDKPGAL-----SKQA-------LTD----EMGLKSI----TDREVCCFMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~----~~~~~~~~~~Sa~-------- 164 (184)
+.. .+.|+++|+||+|+.... ..++ +.. ....... .....+++++||+
T Consensus 226 -l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 -IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp -TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred -HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 222 367899999999986432 1111 111 1111000 0123469999999
Q ss_pred ------CCCCHHHHHHHHHHhhhc
Q 030008 165 ------NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ------~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|.+.+.+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=144.81 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=86.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc--CCCCC------------------CCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
.++..+|+++|++|+|||||+++|+. +.+.. ....|+......+..++..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999984 22110 12334445555677788999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.+...+..+++.+|++++|+|+.++.+......| ..+.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 9988899999999999999999987665554333 32322 36899999999999754
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=140.78 Aligned_cols=114 Identities=20% Similarity=0.163 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-------------C-------CCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-------------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
.++..+|+++|++|+|||||+++++...... . ...|.......+......+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567899999999999999999998422110 0 0123334445566778999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.+...+..+++.+|++++|+|+.++..... ..++..... .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999999999999999999987643322 233333332 368999999999987
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=130.31 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH-------HHh-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE-------RYC- 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~- 85 (184)
.+.++|+++|++|+|||||+|++++.... .....|.......+..++..+.+|||||+..+..... .++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36799999999999999999999987642 2233355556666778888999999999866532222 222
Q ss_pred -ccCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCC-CCCCCcEEEEeeCCCCCC
Q 030008 86 -RAVSAIVYVVDAADPDNLSIS-RSELHDLLNKP-SLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 -~~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~ 135 (184)
..+|++++|+|+.... +... ..++..+.... .....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2679999999887643 3222 23333222211 111259999999999853
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=141.73 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-CCC--------CCccceeEEEE--EeCc--EEEEEEecCCc-------hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDM--------IPTVGFNMRKV--TKGN--VTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~--------~~t~~~~~~~~--~~~~--~~~~~~D~~G~-------~~ 76 (184)
...++|+++|++|+|||||++++++.... ... .+|.+...... ...+ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998754332 221 13444333222 2222 47999999998 44
Q ss_pred hHHhHH-------HHhccC-------------CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWE-------RYCRAV-------------SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+..... .+++.+ ++++|+++.. ..++......+...+. ..+|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 443333 444332 3566666542 3344444433333332 46899999999999754
Q ss_pred CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+...+..... ......+++++++||+++.| ++.+..+.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 32222111111 11223456899999999988 666666655543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=139.72 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CCC------------------CCCCccceeEEEEEeCc-------EEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YSE------------------DMIPTVGFNMRKVTKGN-------VTIKLW 69 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 69 (184)
++..+|+++|+.|+|||||+++|+... +.. ....|+......+.+.+ +.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997421 110 11223333334455554 899999
Q ss_pred ecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
||||+..+...+..+++.+|++++|+|+.++....... .+..... .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999989999999999999999999875443332 2332222 36899999999998653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=134.44 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhhccc---ceeEEEEEcCCCCChHHHHHHHHcCCCCC-CC-CCcccee----------------------
Q 030008 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVVATGGYSE-DM-IPTVGFN---------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~-~~t~~~~---------------------- 55 (184)
+++++.+.++..... ...+|+++|.+|+|||||+|+|++..+.+ .. ..|....
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 456676666654432 35799999999999999999999877631 11 1111000
Q ss_pred -----------------------------EEEEEe-CcEEEEEEecCCch-------------hhHHhHHHHhccCC-EE
Q 030008 56 -----------------------------MRKVTK-GNVTIKLWDLGGQP-------------RFRSMWERYCRAVS-AI 91 (184)
Q Consensus 56 -----------------------------~~~~~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~-~i 91 (184)
...+.. ...++.+|||||.. .+..+...++..++ ++
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 001111 13679999999952 34556667776655 55
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++....-......+..+ . ..+.|+++|+||+|+.+... ....... ..........+++++||+++.|++
T Consensus 172 L~v~~a~~~~~~~~~~~i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 172 LAVSPANSDLANSDALKVAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp EEEEETTSCGGGCHHHHHHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTC
T ss_pred EEEecCCCccchhHHHHHHHHh-C---cCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccc
Confidence 6666766432211222233333 2 24689999999999975433 2222221 111111223467889999999999
Q ss_pred HHHHHHHH
Q 030008 171 SVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 247 ~l~~~l~~ 254 (353)
T 2x2e_A 247 DITAALAA 254 (353)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99998876
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=137.75 Aligned_cols=159 Identities=21% Similarity=0.240 Sum_probs=109.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
.-.|+++|++|||||||++++++... ...+.+|.......+...+ ..+.++|+||... +..........+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 35689999999999999999986542 2344556666666666554 7899999999632 122233445679
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+.+++++|+. ...+..+..+...+..... ....|.++|+||+|.......+.+.+.. ...+.+++++||++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGA 310 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCcc
Confidence 9999999998 5556665554444433211 1247999999999997541112222222 1224579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.+.
T Consensus 311 gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 311 GLPALKEALHALVRST 326 (416)
T ss_dssp THHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988653
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=124.16 Aligned_cols=119 Identities=11% Similarity=0.043 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH-------HhHHHH--
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERY-- 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~-- 84 (184)
.+.++|+++|.+|+|||||+|++++.... .....|.......+...+..+.+|||||+..+. ..+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977652 223334444455566778899999999976542 122222
Q ss_pred hccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCCCCC
Q 030008 85 CRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPS-LSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~ 136 (184)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999988653 233322 33333322111 112699999999998653
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=137.25 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=85.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC------------------C------CCCCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG------------------Y------SEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~------------------~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-+|+|+|+.++|||||..+|+... + .....-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 355799999999999999999986110 1 1112235555566788899999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..|.....+.++-+|++|+|+|+..+-..+. ...|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999998743222 233333333 47999999999998643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=132.19 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCC-Ccccee------------------------------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS-EDMI-PTVGFN------------------------------------------ 55 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~-~~~~-~t~~~~------------------------------------------ 55 (184)
.+|+++|++|||||||+|++++..+. .... .|....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999987652 2211 111100
Q ss_pred ------------EEEE-EeCcEEEEEEecCCchhh-------------HHhHHHHhccCCEEEEEEeCCCcCcHH-HHHH
Q 030008 56 ------------MRKV-TKGNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADPDNLS-ISRS 108 (184)
Q Consensus 56 ------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~-~~~~ 108 (184)
...+ ......+.+|||||...+ ......++.+++++++|+|..+.+... ....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 0001 112346899999997665 667778899999999999886544222 1122
Q ss_pred HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 109 ELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 109 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.+.. ....+.|+++|+||+|+.+... ....... .....+.+|+++|+.++.++++.+..
T Consensus 195 l~~~----~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 195 ISRE----VDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHH----SCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHH----hcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence 2222 2234689999999999975432 1221211 12234457899999998887765443
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-20 Score=143.02 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE---------------------eC---cEEEEEEecCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT---------------------KG---NVTIKLWDLGG 73 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~---------------------~~---~~~~~~~D~~G 73 (184)
++|+++|.+|+|||||+|++++.... ..+++|......... .. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999977632 334455554443321 11 36799999999
Q ss_pred chhh----HHhHH---HHhccCCEEEEEEeCCCc
Q 030008 74 QPRF----RSMWE---RYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~ii~v~d~~~~ 100 (184)
.... ..+.. .+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-19 Score=132.72 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=71.4
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||||.... ....+..+|++++|+|+...+....+. ......|+++|+||+|+........
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 4578999999995432 223457899999999987664332211 1112469999999999864322222
Q ss_pred HHhHhCcC----c--ccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 142 LTDEMGLK----S--ITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~~----~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....+... . ......+++++||++|.|++++++.|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22222111 0 01123579999999999999999999887653
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-17 Score=123.07 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
.+|+++|.||+|||||+|++++... ...+++|..+....+...+..+.++||||... ........++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 5899999999999999999997654 44678899999999999999999999999432 22345566789999
Q ss_pred EEEEEeCCCcCcH-HHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 91 IVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 91 ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
+++|+|+.++... ..+...+..+. ......|.+++.||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 9999999986321 22222222221 11124566677777775
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=129.52 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhhcc---cceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCC-Ccccee----------------------
Q 030008 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVVATGGY-SEDMI-PTVGFN---------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~-~t~~~~---------------------- 55 (184)
+.+++.+.++.... -...+|+++|.+++|||||+|++++..+ +.... .|..+.
T Consensus 32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~ 111 (772)
T 3zvr_A 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 111 (772)
T ss_dssp HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCB
T ss_pred HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCccc
Confidence 34555555555532 2457999999999999999999998765 22211 121110
Q ss_pred -----------------------------EEEEEe-CcEEEEEEecCCchh-------------hHHhHHHHh-ccCCEE
Q 030008 56 -----------------------------MRKVTK-GNVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAI 91 (184)
Q Consensus 56 -----------------------------~~~~~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~~~i 91 (184)
...+.. ...++.++||||... .......++ ..+|++
T Consensus 112 ~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlI 191 (772)
T 3zvr_A 112 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 191 (772)
T ss_dssp CCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEE
Confidence 011111 123588999999433 233444555 567999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++.+.........+..+ .. .+.|+++|+||+|+.+.... ..+.. ...........+++++||++|.|++
T Consensus 192 L~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 192 LAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp EEEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSE
T ss_pred EEEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccch
Confidence 9999998753322222223333 22 46899999999999864332 22221 1111112234568889999999999
Q ss_pred HHHHHHHH
Q 030008 171 SVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+..
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999876
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=138.64 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC------------CCC------CCCCccceeEEEEEeC----------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG------------YSE------DMIPTVGFNMRKVTKG---------------- 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~------------~~~------~~~~t~~~~~~~~~~~---------------- 62 (184)
.+..+|+++|++|+|||||+++|+... +.+ ....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998531 100 1122443333333332
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+..+.+|||||+..+...+..+++.+|++++|+|+.++.++.....|.. ... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999999877766543333 222 368999999999986
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=129.99 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=80.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeC------------------------c-------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKG------------------------N------- 63 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~------------------------~------- 63 (184)
...+|+++|.+|+|||||+|+|++..+. ....++........... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999987753 22222221111100000 0
Q ss_pred ----------EEEEEEecCCchh-----------hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC
Q 030008 64 ----------VTIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+. ....
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcCC
Confidence 2589999999764 45667778899999999999987544444444444432 2358
Q ss_pred cEEEEeeCCCCCCCCCH
Q 030008 123 PLLVLGNKIDKPGALSK 139 (184)
Q Consensus 123 ~~iiv~nK~D~~~~~~~ 139 (184)
|+++|+||+|+.+..+.
T Consensus 220 pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQL 236 (550)
T ss_dssp GEEEEEECGGGSCHHHH
T ss_pred CEEEEEECCCccCHHHH
Confidence 99999999999854333
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=124.30 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=64.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-- 139 (184)
.+.++.++||||..... ......+|++++|+|+..++....+.. .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45689999999954222 334678999999999987642221111 11 23588999999998642111
Q ss_pred --HHHHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 140 --QALTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..+...+..... .....+++++||++|.|++++++.|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 122222221111 112347899999999999999999988753
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-16 Score=117.00 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCchhhH-
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPRFR- 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~~- 78 (184)
.++|+++|.+|+|||||+|++++.... ..+++|++.....+...+ ..+.+|||||..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999986642 334556665554444433 579999999987653
Q ss_pred ------HhHHHHhccCCEEEEEEeCCC
Q 030008 79 ------SMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 79 ------~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 224456789999999999986
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=122.73 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=76.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC-CCCCCC--------CCccceeEE--EEE--eCcEEEEEEecCCc-------hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG-GYSEDM--------IPTVGFNMR--KVT--KGNVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~-~~~~~~--------~~t~~~~~~--~~~--~~~~~~~~~D~~G~-------~~ 76 (184)
.-.++|+++|++|+|||||++++.+. .++... .++...... .++ .....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998864 332221 122221111 111 22367999999997 44
Q ss_pred hHHhHH-------HHhcc-------------CCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWE-------RYCRA-------------VSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+..... .++.. +++++++.+++.. ++.... ..+..+ . ...|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence 433332 33322 2345666654321 232222 222222 1 3579999999999974
Q ss_pred CCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+.....+.. .......+++++++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 32211111111 1112223467999999999 999999998887754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=116.57 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=92.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCcc--------ceeEEEE------------------EeC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTV--------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~--------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|||||||++++....... .+..+. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356799999999999999999998542111 111100 1111111 113
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHH
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 140 (184)
..++.++||+|+..... .+....+.+++|+|+.+.... ...+. .. ...|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence 46789999999511110 011246889999999876421 11111 11 14788999999998642 2333
Q ss_pred HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+........ ...++++++||++|.|++++++.|.+.+.+
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 333333211 234579999999999999999999987754
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-18 Score=137.51 Aligned_cols=158 Identities=21% Similarity=0.271 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCC-----C-------------CCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT--GGYSE-----D-------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~--~~~~~-----~-------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
-+|+|+|+.++|||||..+|+. +.... . ..-|+......+.++++.++++||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3789999999999999999872 11100 0 01133334445677889999999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc------
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~------ 150 (184)
...+.++-+|++++|+|+..+-..+ ....|..... .++|.++++||+|....... +++.+.+....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9999999999999999998763222 2233333332 36899999999998654322 12222111000
Q ss_pred --------------------------------------------------ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 151 --------------------------------------------------ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....-.|++..||+++.|++.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001124678899999999999999999876
Q ss_pred hc
Q 030008 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=116.42 Aligned_cols=118 Identities=14% Similarity=-0.009 Sum_probs=70.3
Q ss_pred EEEEEEecCCchhhHHh------HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~------~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
+++.++||||+...... ....+.. +++++++|+.........................|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 57999999998765332 2234455 8999999986544333332211111000011258999999999987532
Q ss_pred CHHHHHhHhCc------C-------------------cccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 138 SKQALTDEMGL------K-------------------SITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 138 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+++.+.+.. . .......+++++||+++.|++++++.|.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22111111100 0 001122368999999999999999999887653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=118.69 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=66.2
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||||....... ....+|++++|+|+..++.+..+.. .. ...|.++|+||+|+........
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4578999999996654332 4578999999999976532211110 00 1368899999999974322221
Q ss_pred HHhHhC----cCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 142 LTDEMG----LKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
....+. .... .....+++++||++|.|++++++.|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111 1110 111346899999999999999999988654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-17 Score=123.47 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=71.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC-CCC-------CCccceeEEE--EEe--CcEEEEEEecCCchhhH-------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS-EDM-------IPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFR------- 78 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~-------~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~------- 78 (184)
-.++|+++|++|+|||||++++++.... ... .+|....... +.. ....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3578999999999999999999976552 111 1222211111 111 22478999999975431
Q ss_pred Hh-------HHHH-----------hccCC--EEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 79 SM-------WERY-----------CRAVS--AIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 79 ~~-------~~~~-----------~~~~~--~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
.. ...+ +.+++ +++|+++++. .++.... .++..+ . .++|+|+|+||+|+....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 1111 23333 4555555431 2333333 344444 2 268999999999997532
Q ss_pred CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+..... ......+++++++|+.++.++++++..+.+.+
T Consensus 184 ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2222111211 11122356789999999999999888877654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-17 Score=122.12 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=100.2
Q ss_pred HHHHHHHcCCCC-CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHH
Q 030008 34 SLVNVVATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELH 111 (184)
Q Consensus 34 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~ 111 (184)
+++.+++.+.+. ..+.||++..+......+..+.+||+ ++++..++..+++++|++++|+|+++++ ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888887 77889999544322112237899999 8899888899999999999999999987 6777777777
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 112 DLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 112 ~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... ..++.+.+.. . +++++|||++|.|+++++..+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 6533 3699999999999975322 1223333321 1 57999999999999999987653
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=124.17 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=79.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC--------CCC------------CCCCCccceeEEEEEe-------CcEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG--------GYS------------EDMIPTVGFNMRKVTK-------GNVTIKL 68 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~--------~~~------------~~~~~t~~~~~~~~~~-------~~~~~~~ 68 (184)
.++--+|+|+|+.++|||||..+|+.. ... ....-|+......+.+ +++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 345569999999999999999998711 110 1111133223333333 3688999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+||||+..|.....+.++-+|++|+|+|+..+-..+. ...+..... .++|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccC
Confidence 9999999999999999999999999999987642222 223333333 3699999999999854
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=111.76 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEe---------------------CcEEEEEEecCCchh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~---------------------~~~~~~~~D~~G~~~ 76 (184)
++|+++|.+|+|||||+|++++... ...+.+|+..+...... .+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997542 23344566554444322 235799999999754
Q ss_pred h-------HHhHHHHhccCCEEEEEEeCCC
Q 030008 77 F-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ~-------~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
. .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 3445556899999999999985
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=108.48 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=83.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE----------------EEEEe-------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM----------------RKVTK------------------- 61 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~----------------~~~~~------------------- 61 (184)
.+.++|+++|++|||||||+++++...+.....++++... ..+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 3568999999999999999999996644333333333211 01110
Q ss_pred -CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CC
Q 030008 62 -GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LS 138 (184)
Q Consensus 62 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~ 138 (184)
...++.++|++|...... .+-...+..+.++|+......... . ... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~--~-~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK--H-PGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT--C-HHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh--h-hhH------hhcCCEEEEeccccCchhHHH
Confidence 011344455544211100 001122444555554322111000 0 011 13677999999998642 23
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
.++....... ....++++++||++|.|++++++.|.+.+.+.
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333222211 12345799999999999999999999887654
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=103.17 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHhhcccceeEEEEEcCC-CCChHHHHHHHHcCCCCC----CCCC---ccc--eeE--------EEEE-----------
Q 030008 10 WLRSLFFKQEMELSLIGLQ-NAGKTSLVNVVATGGYSE----DMIP---TVG--FNM--------RKVT----------- 60 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~-~sGKStli~~l~~~~~~~----~~~~---t~~--~~~--------~~~~----------- 60 (184)
++.++....+.+++++|+. ..=..+|+.+++..+... .+.+ -++ ..+ ..+.
T Consensus 7 ~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~ 86 (227)
T 3l82_B 7 FLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDR 86 (227)
T ss_dssp SSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------
T ss_pred HHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhh
Confidence 3455677889999999986 567779999998543110 0000 011 000 0000
Q ss_pred ------eCcEEEEEEecC------CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHH---HHHhcCCC-CCCCcE
Q 030008 61 ------KGNVTIKLWDLG------GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSEL---HDLLNKPS-LSGIPL 124 (184)
Q Consensus 61 ------~~~~~~~~~D~~------G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~ 124 (184)
....++-....| ||...+..|..|+.++|++|||+|+++.+.+. ....+ ..++.... ..+.|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapL 165 (227)
T 3l82_B 87 AREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165 (227)
T ss_dssp ------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCE
T ss_pred hhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeE
Confidence 001223334444 78889999999999999999999999886554 44444 34444432 367999
Q ss_pred EEEeeCC-CCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 125 LVLGNKI-DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 125 iiv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+|.+||. |+.......++.+.+.+... ...|.+..|||++|+|+.+-+++|.+.+.++
T Consensus 166 LVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 166 LVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9999995 78778888999999887765 4788999999999999999999999988765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=109.11 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=89.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc------CCCC---CCCCCc------------cc-------eeEE----------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT------GGYS---EDMIPT------------VG-------FNMR---------- 57 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~------~~~~---~~~~~t------------~~-------~~~~---------- 57 (184)
..+...++++|++|||||||++.+.+ +... ..+..+ ++ ....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35678899999999999999999972 1110 000000 00 0000
Q ss_pred ----------EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030008 58 ----------KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127 (184)
Q Consensus 58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv 127 (184)
.+...+.++.++||||...... .....+|.+++++|+..++....+.... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 0112467899999999654332 2346899999999986543211110000 12466888
Q ss_pred eeCCCCCCCCC-----HHHHHhHhCcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 128 GNKIDKPGALS-----KQALTDEMGLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 128 ~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+||+|+..... .+++.......... ....+++.+||+++.|++++++.|.+.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 12222222111100 11246889999999999999999987654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=101.85 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=87.3
Q ss_pred cCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHhH
Q 030008 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELH---DLLNKPS-LSGIPLLVLGNK-IDKPGALSKQALTDE 145 (184)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~iiv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||...+..|..|+.++|++|||+|+++.+.++ ....+. .++.... ..+.|++|.+|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999987654 333222 3333211 257999999997 588888888999999
Q ss_pred hCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcCC
Q 030008 146 MGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~~ 184 (184)
+++.... ..|.+..|||++|+|+.+-+++|.+.+.+++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 8876653 6889999999999999999999999987653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=102.08 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=53.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC-----------------cEEEEEEecCCchhh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~~~ 77 (184)
...++|+++|.+|+|||||+|++++.... ..+++|..+....+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 56789999999999999999999977542 34556666666655432 235999999997765
Q ss_pred HH-------hHHHHhccCCEEEEEEeCCCcC
Q 030008 78 RS-------MWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 78 ~~-------~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
.. .+..+++++|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 4567789999999999998643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=96.20 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHH------cCCC---C-CCCCCcc-----------ceeEEE-----------------EE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA------TGGY---S-EDMIPTV-----------GFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~------~~~~---~-~~~~~t~-----------~~~~~~-----------------~~ 60 (184)
...|+++|.+||||||++++|. +... . +...+.. +..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999988 2221 0 0001100 011111 01
Q ss_pred eCcEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL-LVLGNKIDK 133 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~ 133 (184)
..++++.++||||..... ...... ...+|.+++|+|+.......... ..+.. .+|+ .+|+||+|.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~-----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD-----KVDVASVIVTKLDG 252 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH-----HHCCCCEEEECTTS
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh-----hcCceEEEEeCCcc
Confidence 156789999999965321 111111 22689999999998764322222 22211 1564 889999998
Q ss_pred CCCCCH-HHHHhHhCcCc---------c-cCcceeEEEeeecCCCC-HHHHHHHHHHh
Q 030008 134 PGALSK-QALTDEMGLKS---------I-TDREVCCFMISCKNSTN-IDSVIDWLVKH 179 (184)
Q Consensus 134 ~~~~~~-~~~~~~~~~~~---------~-~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 179 (184)
...... .......+... . .....+.+++|+..|.| ++++++.+.+.
T Consensus 253 ~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 754332 22222322111 0 00112345689999999 99999998765
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-12 Score=97.89 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC------CC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG------GY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~------~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
+.+++.+.... +..+|+++|.+|+|||||+|++++. .. ...+..|.......+ + ..+.++||||...
T Consensus 150 ~~L~~~I~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~ 224 (369)
T 3ec1_A 150 AKVMEAINRYR--EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIIN 224 (369)
T ss_dssp HHHHHHHHHHH--TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCC
T ss_pred HHHHHHHHhhc--ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCc
Confidence 45555554432 4568999999999999999999965 22 122334444333222 2 1389999999432
Q ss_pred hH--------HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 77 FR--------SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 77 ~~--------~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.. .....++ +..+.+++++++...-.+..+.. +......+.|+++++||.|..+...
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccccc
Confidence 21 1223333 66789999999853311111111 1122224689999999999876443
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-12 Score=96.74 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+.+++++.... +..+|+++|.+|+|||||+|++++... ...+..|...... .... .+.++||||..
T Consensus 148 ~~L~~~l~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~-~~~liDtPG~~ 222 (368)
T 3h2y_A 148 AELADAIEYYR--GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLDE-ESSLYDTPGII 222 (368)
T ss_dssp HHHHHHHHHHH--TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESSS-SCEEEECCCBC
T ss_pred HHHHhhhhhhc--ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--EecC-CeEEEeCCCcC
Confidence 45556655432 457899999999999999999996521 1222333333322 2221 28999999953
Q ss_pred hh--------HHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 76 RF--------RSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 76 ~~--------~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.. ......++ ...+.++++++....-....+.. +......+.|+++++||+|..+....+.
T Consensus 223 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 223 NHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp CTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHH
T ss_pred cHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHH
Confidence 22 12222222 55688899998853211111110 1112224689999999999986554433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-11 Score=89.66 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=63.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCc-----------------EEEEEEecCCch-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQP- 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~- 75 (184)
++..+++++|++|+|||||+|++++... ...+++|+.+....+...+ ..+.++|+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4678999999999999999999998654 3345557776666665443 468999999932
Q ss_pred ------hhHHhHHHHhccCCEEEEEEeCCC
Q 030008 76 ------RFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 76 ------~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344456667789999999999964
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=91.62 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.0
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcC
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLK 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .++....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 5556555667899999999999999886 78877777765533 4699999999999975421 12222222
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
...+.+++++||++|.|++++++.+..
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 112347999999999999999987643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=91.08 Aligned_cols=137 Identities=11% Similarity=0.170 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC----C--ccceeEEEEEeCc--EEEEEEecCCchhh--------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMI----P--TVGFNMRKVTKGN--VTIKLWDLGGQPRF-------------- 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~----~--t~~~~~~~~~~~~--~~~~~~D~~G~~~~-------------- 77 (184)
++++++|++|||||||++.+++........ + +........+... ..++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 459999999999999999999764321111 1 1111111122222 36899999984321
Q ss_pred HHhHHHHhc-------------cC--C-EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 78 RSMWERYCR-------------AV--S-AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 78 ~~~~~~~~~-------------~~--~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
...+..++. .+ | +++++.|+..+-+... ..+...+. .++|+|+|.||+|.....+...
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD----SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC----SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh----hCCCEEEEEcchhccchHHHHH
Confidence 112222211 11 2 3556666655432222 22222322 4689999999999986544444
Q ss_pred HHhHhCcCcccCcceeEEEeee
Q 030008 142 LTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+...+... ....+++++.+|.
T Consensus 197 l~~~I~~~-L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSE-LVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHH-HBTTBCCCCCCC-
T ss_pred HHHHHHHH-HHHcCCcEEecCC
Confidence 43333221 1223445555553
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=84.09 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc-e----eEEEEEeCc-EEEEEEecCCchhh----HHhHHH-Hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-F----NMRKVTKGN-VTIKLWDLGGQPRF----RSMWER-YC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~-~----~~~~~~~~~-~~~~~~D~~G~~~~----~~~~~~-~~ 85 (184)
.....++++|++|||||||+|.+.+...+....-+.+ . .....+... ..++++|+||.... ...... .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4556899999999999999999996332211111000 0 011122221 25899999985322 222222 12
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHhHhCcCc-----c
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP---------GALSKQALTDEMGLKS-----I 151 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~---------~~~~~~~~~~~~~~~~-----~ 151 (184)
...+..++ +|...+.. .-......+.. .++|+++|.||.|+. +.....++.+.+.... .
T Consensus 147 ~~~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 77763221 11122222322 258999999999974 1223333333332221 0
Q ss_pred c-CcceeEEEeee--cCCCCHHHHHHHHHHhhhc
Q 030008 152 T-DREVCCFMISC--KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~-~~~~~~~~~Sa--~~~~~v~~l~~~i~~~l~~ 182 (184)
. .....++.+|+ .++.|++++.+.+.+.+++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 11235789999 6667799999999988765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-10 Score=82.73 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=69.4
Q ss_pred EEecCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 68 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 68 ~~D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. .....+...+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 55789976 456677888999999999999998865542 1223333 368999999999998642233333333
Q ss_pred CcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 147 GLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. ..+.+++++||.++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2 12346899999999999999998887764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=85.50 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=67.3
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcc
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSI 151 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~ 151 (184)
..+++...+..+.+.++++++|+|+.+++ ......+..+. .++|+++|+||+|+.+... .+...+.... ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 46888999999999999999999999853 11112223332 2689999999999975432 2222211110 01
Q ss_pred cCcc---eeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 152 TDRE---VCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
...+ .+++.+||++|.|++++++.|.+...
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 1112 26899999999999999999977543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=77.71 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=62.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCcccee-EEE-EEeC--cEEEEEEecCCchh---------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFN-MRK-VTKG--NVTIKLWDLGGQPR--------- 76 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~-~~~-~~~~--~~~~~~~D~~G~~~--------- 76 (184)
+++++++|++|||||||+|.+++...+.. ...+.... ... .+.. ...++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999985322111 01111111 111 1111 13689999998321
Q ss_pred -hHHh----HHHH--------------hccCCEEEEEEeCC-CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 -FRSM----WERY--------------CRAVSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 -~~~~----~~~~--------------~~~~~~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.... .... +..+++.++++|.. .+-.... ...+..+ .. . .++|+|+||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L-~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL-SK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH-HT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh---c-CcEEEEEeccccCCH
Confidence 1110 1111 12357889999965 3322222 2222333 22 2 899999999999865
Q ss_pred CCH
Q 030008 137 LSK 139 (184)
Q Consensus 137 ~~~ 139 (184)
.+.
T Consensus 156 ~e~ 158 (270)
T 3sop_A 156 EEK 158 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=85.42 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=68.2
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcc
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSI 151 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~ 151 (184)
.++.+...+..+...++++++|+|+.++++ .....+..++ .++|+++|+||+|+.+... .+...+.... ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 478899999999899999999999998752 1112222332 2689999999999976432 2222221110 01
Q ss_pred cCcc---eeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDRE---VCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
...+ .+++.+||++|.|++++++.|.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 1111 268999999999999999999876543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-09 Score=82.43 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=63.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC------CCCCC-----------ccceeEEE-----------------EE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS------EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~------~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
...|+++|.+|+||||++..+.. .+.. +...+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999988762 1111 00000 00110110 01
Q ss_pred eCcEEEEEEecCCchhhHH----hHH--HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRS----MWE--RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~----~~~--~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..++++.++||||...... ... .....+|.+++|+|+.......... ..+... ..+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence 1347899999999433211 111 1234579999999998764333323 233222 23557889999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.83 E-value=6.5e-10 Score=85.90 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC------CC---CCCCC------------------------Cccc---eeEEEE-EeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG------GY---SEDMI------------------------PTVG---FNMRKV-TKG 62 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~------~~---~~~~~------------------------~t~~---~~~~~~-~~~ 62 (184)
..|+++|++|+||||+++.+... .. ...+. ++.. .....+ ...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 57999999999999999988731 10 00000 0000 000000 014
Q ss_pred cEEEEEEecCCchhhHHhHH----HH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWE----RY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI-P-LLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~----~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nK~D~~ 134 (184)
.+++.++||||......... .. +..+|.+++|+|+..+.. .......+.. .. | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-----AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-----TSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-----cccCCeEEEEeCCCCc
Confidence 57899999999654322111 11 125799999999976532 2222222221 24 5 78999999986
Q ss_pred CCCC-HHHHHhHhCcCcc----------cCcceeEEEeeecCCCC-HHHHHHHHHHhh
Q 030008 135 GALS-KQALTDEMGLKSI----------TDREVCCFMISCKNSTN-IDSVIDWLVKHS 180 (184)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~l 180 (184)
.... ...+....+.... .....+..++|+..|.| +..+++.+.+.+
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4322 1122222221100 00111234567888887 776666654443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=74.61 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=35.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+..++|+++|.||+|||||+|++.+.... ..+..|..... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 46689999999999999999999976532 12223333322 222 2368999999953
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-08 Score=78.66 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-09 Score=76.02 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
++++++|.+|+|||||+|++.+..... .+..|..... +.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcc
Confidence 699999999999999999999765421 1122222221 222 2368999999954
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=78.65 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCC----CccceeEEEE---EeCcEEEEEEecCCch
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMI----PTVGFNMRKV---TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~----~t~~~~~~~~---~~~~~~~~~~D~~G~~ 75 (184)
..++.+.+. ..+..+|+++|.||+|||||+|++++.... .... .|.+...... ...+..+.++||||..
T Consensus 26 eal~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 26 EALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344555543 356789999999999999999999976532 2222 2233221111 1245789999999954
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-08 Score=76.40 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=40.9
Q ss_pred cEEEEEEecCCchh--h----HHhHHH--HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPR--F----RSMWER--YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~--~----~~~~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
++++.++||||... . ...... ....++.+++|+|+...+........+.+. -.+..+|+||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 57899999999533 1 111111 122468999999998765433333333322 14567899999986
Q ss_pred C
Q 030008 135 G 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.2e-08 Score=71.02 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=60.4
Q ss_pred cCCchhh-HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQPRF-RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+... ...+...+.++|+++.|+|+.++.+..... +. ++ ++|.++|+||+|+.+....+++...+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS------RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 5776533 456777889999999999999886443211 11 11 6899999999999864322333333321
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.++ ++||.++.|++++++.+..
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 23356 9999999999999887654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-07 Score=69.81 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCchh--hHH-hHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D 132 (184)
..+++.++||||... ... ... .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999766 322 221 12346899999999975422 2222233322 245 678899999
Q ss_pred CCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.... ........ ...+.|+.+++ .|++++++
T Consensus 251 ~~~~--~g~~~~~~-----~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK--GGGALSAV-----AATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT--HHHHHHHH-----HTTTCCEEEEE--CSSSTTCE
T ss_pred CCcc--hHHHHHHH-----HHHCcCEEEEe--CCCChhhc
Confidence 7532 11111111 11234566665 67777654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-07 Score=68.19 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.--++++|++||||||+++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999887
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.4e-07 Score=66.56 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHhccCCEEEEEEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhHhCcCcccCccee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDEMGLKSITDREVC 157 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (184)
..+.++|.+++|+|+.+|..-.. +..++... .. .++|.++|+||+|+.+... .+.+.+.+.. .+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCCe
Confidence 46789999999999997753333 33333222 11 4688999999999986532 2333333321 2336
Q ss_pred EEEeeecCCCCHHHHHHH
Q 030008 158 CFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~ 175 (184)
++.+||.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 899999999998877653
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-05 Score=60.60 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+..-|+|+|++++|||||+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456788999999999999999985
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-06 Score=66.81 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.|||||||++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 34578999999999999999877
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.3e-06 Score=61.75 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|+.||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999999999887
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=59.80 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred HhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEE
Q 030008 84 YCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+.++|.+++|.+. .|. +...+..++...-. .++|.++|+||+|+.+... .+++...+ ...+.+++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 35788999987654 454 33333333322211 3578899999999985432 12233332 22344689
Q ss_pred EeeecCCCCHHHHHHHH
Q 030008 160 MISCKNSTNIDSVIDWL 176 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i 176 (184)
++||.++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999987653
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.92 E-value=7.3e-05 Score=57.82 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=39.9
Q ss_pred CcEEEEEEecCCchhhH-HhHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 134 (184)
.++++.++||||..... .... ..+..++.+++|+|+.......... ..+.. ..+ .-+|+||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~---~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA---KAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH---HHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH---HHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999965432 1111 1234678999999997654332222 22211 123 24689999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 44
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=53.30 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.++..+....+.-.++++|++|+|||||++.+.+
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445555555555667899999999999999998874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=54.88 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+...+... .++...|+|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444333 35678899999999999999998873
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-05 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999984
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-05 Score=59.13 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
-.|+++|++||||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999999776
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1.9e-05 Score=60.78 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=37.9
Q ss_pred CcEEEEEEecCCchhhHH-hHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS-MWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
..+++.++||||...... ... ...-.++.+++|+|+....... .....+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av---~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH---HHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHH---HHHHHHHhc----CCceEEEEeCcCCcc
Confidence 457899999999643321 111 1123578899999997543222 222222211 112456889999753
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4.8e-06 Score=65.16 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=49.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchh--hHHhH--------H
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPR--FRSMW--------E 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~--~~~~~--------~ 82 (184)
.....|+++|.+||||||+.++|...-.. ...++.......+. .......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998743110 11122221111010 0112345788888632 23332 4
Q ss_pred HHhccCCEEEEEEeCCCcC
Q 030008 83 RYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~ 101 (184)
.++...++.++|+|+++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4555678888999999873
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.69 E-value=2.3e-05 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.67 E-value=6.3e-05 Score=52.01 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.++.+++......+...|+++|++||||||+++.+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45666676655445667899999999999999998873
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=54.63 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcEEEEEEecCCchhhHHhH-------HHHh-----ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRSMW-------ERYC-----RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~-------~~~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
..+++.++||||........ ...+ ..++.+++|+|+... ...+.. ...+... -...=+|.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~~~----~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFSKV----ADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHTTT----SCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHhhc----CCCcEEEEe
Confidence 45789999999965542111 1111 237889999999843 222222 2333211 122347789
Q ss_pred CCCCCC
Q 030008 130 KIDKPG 135 (184)
Q Consensus 130 K~D~~~ 135 (184)
|.|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 999753
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00038 Score=47.91 Aligned_cols=69 Identities=9% Similarity=0.026 Sum_probs=45.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~ 134 (184)
..+++.++|+|+.. .......+..+|.++++....... ......+..+..... ....++.+|+|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 34789999999865 334455667799999999887554 444444433322211 2346779999999964
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=4e-05 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|++|||||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.7e-05 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999853
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.4e-05 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++.--++++|++||||||+++.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455678999999999999999998
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=53.19 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=27.3
Q ss_pred HHHHHHHHHhh---cccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~---~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..+.+.+..+ ...+...|+|+|++|||||||.+.+.
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555555543 23456889999999999999998776
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.49 E-value=7e-05 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--++++|++|||||||++.+.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34456899999999999999998853
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.6e-05 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--|+++|++||||||+++.|...
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 345567899999999999999999854
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.46 E-value=8.3e-05 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45567899999999999999999854
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.41 E-value=7.9e-05 Score=51.73 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--++++|+.|||||||++.+.+-
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345556899999999999999998753
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=7.8e-05 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 444567999999999999999643
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.2e-05 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|+.|||||||++.+.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567899999999999999998853
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999988
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00031 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=23.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.++.-.++++|+.|||||||++.+.+.-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566678999999999999999988643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|+++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998863
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445689999999999999999873
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.--|+++|++|||||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456889999999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00028 Score=47.64 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.+...|+++|++||||||+++.+....
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999998543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--++++|+.|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45567899999999999999998853
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0002 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|.+||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999886
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334578999999999999999873
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=48.17 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVV 39 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l 39 (184)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00027 Score=50.98 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++++|+.|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 45666789999999999999998874
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.-.|+++|++||||||+.+.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455689999999999999999887
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999984
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....-|+++|++||||||+++++..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
-.++++|++|+|||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999999543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=49.04 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999843
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00052 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.+.|++.|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999886
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00034 Score=48.44 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+..|++. .++.-.+++.|+||+||||++.++.+
T Consensus 46 ~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 46 GALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 344445543 23344699999999999999887763
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=50.59 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++...|+++|+.|||||||++.+.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999998875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=52.35 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 444679999999999999999984
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999999999974
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.590 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444679999999999999999984
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++|+|++|||||||++.+.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 46677899999999999999998873
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00028 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|+++|++||||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998863
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00045 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+-|+++|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998763
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00028 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|++||||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999886
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444689999999999999999984
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445679999999999999999984
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.=.++++|+.|||||||++.+.+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34446899999999999999998854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999984
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00028 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444689999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=51.50 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 444679999999999999999884
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444689999999999999999983
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4446799999999999999999853
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444679999999999999999984
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00036 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=51.17 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444679999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|+++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0003 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444689999999999999999974
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.=.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34446799999999999999999853
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00074 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=-++++|++|||||||++.+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34555689999999999999999975
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998874
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=47.61 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999998874
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=50.37 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455789999999999999999884
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999998
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00029 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0004 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++...|+++|++||||||+.+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999999853
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00036 Score=47.42 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00035 Score=47.45 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0003 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 444679999999999999999984
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|++.|.+||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999999886
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00061 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+||||+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00028 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344679999999999999999984
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444689999999999999999874
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0004 Score=47.69 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0003 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|++|+|||||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999884
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00038 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
+.|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999887
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00041 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00037 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|++.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00038 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++++|++|||||||+|.+.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46799999999999999999854
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999984
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00041 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|++.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00074 Score=44.01 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.+.+.++.. ......|++.|++|+|||++.+.+...
T Consensus 10 ~~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHH-TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 44555555543 245678999999999999999998754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0004 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.||||||+++.+.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 333899999999999999998873
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00041 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++...|+++|++||||||+.+.+.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999887
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.05 E-value=9.9e-05 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.-.++++|++|+|||||+|.+.+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3457899999999999999999853
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00044 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00042 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00064 Score=49.33 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999999985
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00047 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00054 Score=51.96 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++++|++||||||+++.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34555799999999999999999874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00035 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999984
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00044 Score=48.60 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999854
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00069 Score=52.16 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.=-++++|+.||||||+++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444689999999999999999884
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00064 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+...|+++|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998874
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00066 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+..-.++++|++||||||+++.+++-
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44556999999999999999999853
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00048 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00055 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.+.|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999886
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00021 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999873
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00054 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.014 Score=41.80 Aligned_cols=66 Identities=5% Similarity=-0.104 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
..+++.++|+|+... ......+..+|.++++...... +...+......+... ....++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 347899999998543 3345566679999999988643 444444444333222 13467889999994
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.015 Score=45.00 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.++.--|++.|+||+|||+|.+++.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345667899999999999999999984
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00064 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|+++|.+||||||+.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 456789999999999999999886
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00047 Score=48.24 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999886
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0011 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00043 Score=46.52 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 334578999999999999999984
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0006 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00038 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+++++|++|||||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999884
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
......+++.|++|+|||++.+.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00052 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44578999999999999999887
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00047 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998873
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0009 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00057 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....+.|++.|++||||||+.+.+.
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999886
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00062 Score=47.76 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0062 Score=42.16 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCc-hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQ-PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.+++.++|+|+. ... .....+..+|.++++...... +.......+..+.... ..++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3578999999986 433 234556778999999987643 3444444333332211 456889999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00068 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-|++.|++||||||+.+++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00077 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999887
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00057 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 334578999999999999999984
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00064 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00031 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4455789999999999999999873
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00058 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 344579999999999999999984
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0006 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 334578999999999999999984
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0008 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00062 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 334578999999999999999984
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 344679999999999999999884
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0016 Score=48.09 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+|+.+......-.+.+.|++|+|||+|+.++..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344555544222357899999999999999998874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00064 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 344578999999999999999984
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00048 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|+.|||||||++.+.+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999984
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00068 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|+|||||++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344567899999999999999887
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00027 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|++.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999886
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=50.98 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|+.|||||||++.+.+-
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45558999999999999999999843
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00069 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.=-++++|+.|||||||++.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 33578999999999999999984
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=46.54 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....+++.|++|+|||++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999873
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00073 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-|+++|++|||||||..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.004 Score=46.25 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+..++.... ......|++.|++|+|||++++.+...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34455554332 133457999999999999999999743
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00073 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 344578999999999999999984
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0013 Score=47.58 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999853
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0008 Score=44.94 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00084 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+|+|+.|||||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999863
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0011 Score=44.93 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998863
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00073 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999884
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00058 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=49.92 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcc-ccee--EEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFF-KQEM--ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~--~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+..++..... ...- .+++.|++|+||||+++.+.+.
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 27 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445555544322 2223 7999999999999999998743
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.001 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|++.|.+||||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.021 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+-.-|.|+|+.++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345677799999999999999664
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.002 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.|++.|+||+|||.|..++.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999885
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0014 Score=47.52 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
...-.+++.|++|+|||++++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999743
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00086 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0009 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 444689999999999999999884
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|+++|.+||||||+.+.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999876
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00095 Score=43.41 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.+.++... .....|++.|++|+|||++.+.+..
T Consensus 14 ~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 14 QEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHH
Confidence 44555544332 4456799999999999999998863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=44.17 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00096 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=-++++|++|+|||||+..+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35555689999999999999998773
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=45.22 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.-++.|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999988743
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0013 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+..-|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0018 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00058 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 444578999999999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34578899999999999999887
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00088 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555689999999999999999985
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-.|++.|++|+|||++++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4556799999999999999999984
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0013 Score=46.92 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=46.64 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.--++++|++|+|||||+..+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556789999999999999999885
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0024 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....+++.|++|+|||++.+.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999998665
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0029 Score=47.54 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.+++.+..... .+..+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 4555555543332 234679999999999999998665
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0018 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.022 Score=43.93 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=24.9
Q ss_pred HHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 11 ~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++..-.+..--|++.|+||+|||+|.+++.+
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3334445667899999999999999999984
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0016 Score=45.52 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
--|+++|+|||||+|....|.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 346689999999999998887
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
..+.|++.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999887
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|+.|||||||++.+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667899999999999999998874
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.024 Score=43.35 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.5
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.++.--|++.|+||+|||+|.+++.+
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3445667899999999999999999974
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00056 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 344578999999999999999984
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +|+|+.|+||||++.++.
T Consensus 23 ~g~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGIN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCeE-EEECCCCCCHHHHHHHHH
Confidence 3444 799999999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5679999999999999999954
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0033 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999876
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=49.22 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..-.++.--|++.|+||+|||+|++++.+
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333345556799999999999999999974
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=49.19 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=24.8
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...+.=+++++|++|+|||||++.+.+..
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34677789999999999999999998653
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=49.39 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.6
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...+..-.|++.|+||+|||+|.+++.+
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 344455667899999999999999999984
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHhhc-ccc-eeEEEEEcCCCCChHHHHHHHHc
Q 030008 7 FLNWLRSLF-FKQ-EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 7 ~~~~~~~~~-~~~-~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+.+++.. ... ..++++.|++|+||||+++.+.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344455443 222 22399999999999999998875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.|+++|++||||||+.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999886
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
-+++++++|+|||||||+..++.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0033 Score=47.37 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++..... ...-.+++.|++|+||||+++.+.+
T Consensus 30 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 344445544322 2344799999999999999998874
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0039 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-+++.|+||+|||+|.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999874
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0018 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568899999999999999887
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.1 Score=37.95 Aligned_cols=67 Identities=18% Similarity=0.004 Sum_probs=41.4
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.+++.++|+|+...... .......+|.+++|+...... ...+......+... ....+-+|+|+.|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~-~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNT-LKEVETSLSRFEQN---GIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSB-HHHHHHHHHHHHHT---TCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCc-HHHHHHHHHHHHhC---CCCEEEEEEcCcccc
Confidence 36799999998544322 234456789999999987542 34444333333222 123456788999864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=48.78 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|++|+|||||++.+.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35566889999999999999999884
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0017 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0018 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444678999999999999998873
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0022 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0011 Score=48.48 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.+-|+|.|+.||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998763
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0027 Score=47.06 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=25.6
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...+.... ....-.+.+.|+||+|||++++.+..
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 333444333 34567899999999999999998874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=47.04 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0026 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|.+||||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998773
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.003 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0029 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999863
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0032 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.+++.|++|+||||+++.+.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999743
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0034 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999999984
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
=.++++|+.|||||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 457899999999999999887
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|+|||||+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445567899999999999987775
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0043 Score=48.48 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+...+.+ ...-+++++|+||+|||++++.+..
T Consensus 190 ~~l~~~l~r---~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 190 QRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 344444433 3445789999999999999998774
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+|||||++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998874
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
...+. +++|+.|||||||+++++
T Consensus 22 ~~g~~-~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGIT-VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34554 599999999999999977
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=51.65 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3455789999999999999999884
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0029 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=-++++|+.|||||||++.+.+.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 345789999999999999999853
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0048 Score=44.21 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..+.+.++... .....|++.|++|+|||++.+.+...
T Consensus 16 ~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 16 LEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp HHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 34444444332 34578999999999999999999854
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.004 Score=48.22 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.0
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
....+.=+++++|+.|||||||++.+.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345677789999999999999999998543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.003 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0049 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0044 Score=46.61 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++.... ....-.+++.|++|+||||+++.+..
T Consensus 29 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp HHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34444443322 23455799999999999999998874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0033 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456889999999999999999883
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 346899999999999999999853
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0018 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999874
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0055 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998874
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0052 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--+.++|++|||||||+..+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355567899999999999999998853
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0033 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999854
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999985
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0044 Score=42.68 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
...|+++|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999854
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0097 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
..-|++.|++|+||||+...+...+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 5689999999999999999999654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0044 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4446899999999999999999853
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4455789999999999999998873
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0037 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999854
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0052 Score=47.73 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=24.7
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.-.+..--|++.|+||+|||+|.+++.+
T Consensus 236 ~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 236 ATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp HHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 334456677899999999999999999974
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0023 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++...|++.|..||||||+.+.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998863
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0038 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.-.|++.|++|+|||+|++++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0042 Score=42.88 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +|+|+.|+||||++.++.
T Consensus 23 ~~~~-~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGIN-LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCeE-EEEcCCCCCHHHHHHHHH
Confidence 3444 789999999999999865
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0083 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 399999999999999998874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=19.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVV 39 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l 39 (184)
++.=.++++|++|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 45556899999999999999995
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0048 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|++|+|||++++++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999974
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.007 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++|.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47889999999999999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0051 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998874
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.049 Score=39.31 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~ 134 (184)
.+++.++|+|+...... .......+|.+++|+..... +...+......+.. .+.+++ +|+|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 36799999998543321 22334567999999988653 34444444433322 245655 889999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0082 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0056 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...-|++.|++|+||||+...|...+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34568999999999999999998654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0091 Score=44.28 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..++.+.. ... -.++|.|++|+|||||++.+..
T Consensus 20 ~el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 20 KEIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp HHHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHH
Confidence 34445544 322 3788999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 184 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-33 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 7e-32 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-28 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 3e-28 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-27 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-26 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 6e-26 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-25 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 8e-24 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-22 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 1e-21 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-21 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-20 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 3e-20 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 7e-20 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 7e-20 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-19 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-19 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 5e-19 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-18 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-18 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-17 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 6e-17 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-16 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 6e-16 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 8e-16 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-15 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 2e-15 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-15 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 3e-14 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 6e-14 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 1e-13 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-13 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 3e-13 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-12 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-12 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-11 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-11 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 3e-11 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 4e-11 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 1e-10 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 5e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 6e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 6e-10 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 7e-09 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 1e-08 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-07 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 3e-07 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 4e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 6e-07 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 5e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 7e-06 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 9e-06 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 2e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 4e-05 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 9e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 3e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.001 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 113 bits (283), Expect = 8e-33
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 1/173 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYKNVKFNV 60
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128
WD+GGQ + R +W Y +++VVD AD D + +R ELH ++N + +L+
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
NK D P A+ + +++GL I DR + + + WL + K
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 111 bits (277), Expect = 7e-32
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
Query: 7 FLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVT 65
F + L+ +E+ + ++GL AGKT+++ + G PT+GFN+ ++ N+
Sbjct: 4 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNVETLSYKNLK 62
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+ +WDLGGQ R W Y +A+++VVD+ D D +S + ELH +L + L LL
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
V NK D+PGALS ++ E+ L + DR S I +DWL+ K +
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 102 bits (255), Expect = 1e-28
Identities = 110/164 (67%), Positives = 139/164 (84%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPRF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
RSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L GIP+LVLGNK D PGAL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
++ L ++M L +I DRE+CC+ ISCK NID + WL++HSK
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 102 bits (253), Expect = 3e-28
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 1/175 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
+ LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N
Sbjct: 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRF 61
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+WD+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L LL+
Sbjct: 62 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 121
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
NK D ++ ++ + L SI D + + ++W++ K
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 100 bits (248), Expect = 1e-27
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 7 FLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNV 64
L+ LR L QE+ + L+GL NAGKT+L+ + + PT GFN++ V
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL-ASEDISHITPTQGFNIKSVQSQGF 60
Query: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124
+ +WD+GGQ + R W Y ++YV+D+AD + EL +LL + LS +P+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
L+ NK D A + + + L +I DR S + ++W+ K+
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 95.5 bits (236), Expect = 5e-26
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
S W Y + +++VVD+AD + + EL LL + L+G LL+ NK D PGALS
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A+ + + L SI S ++ IDWL+ S+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.6 bits (237), Expect = 6e-26
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GKT ++ + ++ I T+G + + ++ + +++WD GQ RFR+
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R I+ V D + + R+ + ++ S +++ K
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND----K 126
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ ++ E G K D + S K + N+++ L + K+K
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 94.7 bits (234), Expect = 1e-25
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y + +++VVD+ D + ++ +R EL +L + L LLV NK D P A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+TD++GL S+ R + + +DWL
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.9 bits (230), Expect = 6e-25
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D + + + + L +
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDER----TFTNIKQWFKTVNEHANDEAQL-LLVGNKS 117
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + +T + G + + S KN N++ + L K + K
Sbjct: 118 DMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.1 bits (222), Expect = 8e-24
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+GL NAGKT+L++++ + PT ++ GN+ +DLGG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHML-KNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT 143
Y V+ IV++VDAADP+ +R EL L N L +P ++LGNKID P A+S+ L
Sbjct: 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 123
Query: 144 DEMGLKSIT-------DREVCCFMISCKNSTNIDSVIDWLVKH 179
+GL + T R V FM S WL ++
Sbjct: 124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 87.1 bits (214), Expect = 2e-22
Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 15/186 (8%)
Query: 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVT 65
+ L +L +K+ +L +GL NAGKT+L++++ +PT+ ++T +T
Sbjct: 2 SVLQFLG--LYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIAGMT 58
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+DLGG + R +W+ Y A++ IV++VD AD + L S+ EL L+ +++ +P+L
Sbjct: 59 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL 118
Query: 126 VLGNKIDKPGALSKQALTDEMGL------------KSITDREVCCFMISCKNSTNIDSVI 173
+LGNKID+P A+S++ L + GL K + R + FM S
Sbjct: 119 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178
Query: 174 DWLVKH 179
W+ ++
Sbjct: 179 RWMAQY 184
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.9 bits (209), Expect = 1e-21
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
+++ +IG GK+SL+ + ++ T+G + + V + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
RFR++ Y R ++ V D D + L++L + + I +++GNKIDK
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + GLK + S K + + LV+
Sbjct: 127 ----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.3 bits (210), Expect = 1e-21
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK+ L+ + Y+ D I T+G + + ++ V +++WD GQ RFR+
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 70
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R I+ V D D ++ +++ + S + L++GNK D K
Sbjct: 71 ITSSYYRGSHGIIIVYDVTDQES-FNGVKMWLQEIDRYATSTVLKLLVGNKCDLK---DK 126
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + ++ + ++ S +STN++ + + K
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 170
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.1 bits (199), Expect = 2e-20
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G +V + ++WD GQ R+R
Sbjct: 9 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + V D A L +L + S I ++++GNK D
Sbjct: 69 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR---HL 124
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+A+ + + S +STN++ ++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (199), Expect = 3e-20
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GKT LV G + T+G + ++ V +++WD GQ RFRS
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ + Y R+ +A++ D ++ L ++ S I +LV +
Sbjct: 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE----R 125
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ ++ + + +++ S K S N++ + L
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.9 bits (196), Expect = 7e-20
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
+IG + GKTS + A ++ + TVG + + + +++WD GQ R+R+
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + + D + ++ + + D + + +K +
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESF----NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ ++ E G + F S K++ N+ + LV
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.0 bits (199), Expect = 7e-20
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75
++ L L+G +GK+++V + ++ T G K V ++D+GGQ
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDN----------LSISRSELHDLLNKPSLSGIPLL 125
R W + V+AI++VV ++ + L + + + N L I ++
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 126 VLGNKID 132
+ NK D
Sbjct: 119 LFLNKQD 125
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 79.4 bits (194), Expect = 1e-19
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
W Y A++YVVD+ D D + IS+SEL +L + L L+V NK D A++
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + +GL ++ DR+ F S T +D ++WLV+ KS+
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 2e-19
Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFR 78
L+G GKT L+ G + + + V V +++WD GQ RFR
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 70
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
S+ Y R A++ + D + + ++ L ++ +L+
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA----H 126
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
++ + E G K + + S K N+D + K
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 5e-19
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT--------------KGNVTIKLW 69
+G GKT+ + ++ I TVG + R+ V ++LW
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129
D GQ RFRS+ + R + + D + R+ + L ++++GN
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 130 KIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
K D P ++ + + + + F S N++ ++ L+ +
Sbjct: 130 KADLP---DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 1e-18
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L+ + T+G + + +++WD GQ FRS
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + + V D + + S L D S S + ++++GNK D S+
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLE---SR 123
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + E G + + S K + N++ K K
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (183), Expect = 5e-18
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + D T+G +V+ + +++WD GQ RFR+
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + + V D + S L D N + ++++GNK D ++
Sbjct: 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLE---AQ 124
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ +T E + + + S K N++ K
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.0 bits (178), Expect = 6e-17
Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 35/193 (18%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E++L L+G +GK++ + + +PT G +V ++ D+GGQ R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII--HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 79 SMWERYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKPSLSGIPLLVLG 128
W V++I+++V ++ D + S++ ++ P +++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 129 NKIDKPGALSKQALTDE-----------------------MGLKSITDREVCCFMISCKN 165
NK D + + + L +D+ + +
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 166 STNIDSVIDWLVK 178
+ NI V +
Sbjct: 180 TENIRFVFAAVKD 192
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.3 bits (176), Expect = 6e-17
Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQ 74
+E ++ ++G GK++L TG + E PT+ RK +++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F SM + Y + + V + + + ++ +P++++GNK+D
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
S++ ++ G + S K+ T +D + +V+
Sbjct: 122 ---SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.5 bits (174), Expect = 1e-16
Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + +D T+G V +++WD GQ RFRS
Sbjct: 10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + + V D + + + L D S I +++ GNK D +
Sbjct: 70 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLD---AD 125
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ +T + + E+ S N++ + +K
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 6e-16
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN----MRKVTKGNVTIK 67
+S FK + L+G GK+SL+N T + + T+G +V VT++
Sbjct: 3 KSSLFK----VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIV---YVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124
+WD GQ RFRS+ + R + V D+ NLS + E + P
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
++LGNKID +Q T+E + + F S K++TN+ + + V+
Sbjct: 119 VILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 169
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 69.2 bits (168), Expect = 8e-16
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK + V I + D GQ + ++
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ V S K N+D V L++ +++
Sbjct: 129 VEEAKNRADQW---NVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.9 bits (167), Expect = 1e-15
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNV----TIKLWDLGGQP 75
++L L+G GK+S+V + ++E+ PT+G ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RF S+ Y R A + V D P + +R + +L + S I + ++GNKID
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQ 122
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ + E G K ++ + F S K N++ V + + K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.8 bits (167), Expect = 2e-15
Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 37/185 (20%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
L+G +GK++ + + PT G + NV K+ D+GGQ R W
Sbjct: 7 LLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 84 YCRAVSAIVYVVDAADPDNL----------SISRSELHDLLNKPSLSGIPLLVLGN-KID 132
+V++I+++V +++ D + + S + ++N S + +++ N
Sbjct: 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123
Query: 133 KPGALSKQALTD-----------------------EMGLKSITDREVCCFMISCKNSTNI 169
+ ++ D + R + + N+ NI
Sbjct: 124 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 183
Query: 170 DSVID 174
V
Sbjct: 184 RLVFR 188
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.8 bits (167), Expect = 2e-15
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 38/193 (19%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E++L L+G +GK+++V G T ++ K++D+GGQ R
Sbjct: 2 EVKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISR----------SELHDLLNKPSLSGIPLLVLG 128
W V+AI++ V +D D + + N + +++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 129 N-KIDKPGALSKQALTDEMG----------------------LKSITDREVCCFMISCKN 165
N K + K LT K +E+ +
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 166 STNIDSVIDWLVK 178
+ N+ V D +
Sbjct: 177 TKNVQFVFDAVTD 189
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (163), Expect = 4e-15
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRS 79
+G Q+ GKTSL+ + T+G + T + ++LWD GQ RFRS
Sbjct: 5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 64
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R +A V V D + ++ + + D+ + S + ++++GNK D K
Sbjct: 65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLA---DK 120
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ ++ E G + + V S K N+ + +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.0 bits (157), Expect = 3e-14
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRS 79
L+G GK+SLV G + E T+G + V ++WD GQ R+ S
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R A + V D + ++ + +++ + +L + S I + + GNK D +K
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLA---NK 126
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+A+ + D + S K S N++ + + K
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (155), Expect = 6e-14
Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 7/164 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQ 74
E +L ++G GK++L + + ++ PT+ + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + S K ++ LV+
Sbjct: 122 ----ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.1 bits (152), Expect = 1e-13
Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 5/164 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK + +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F +M + Y + V + + +L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + S K+ N++ + LV+
Sbjct: 122 DERVVGKEQGQNLARQWCN--CAFLESSAKSKINVNEIFYDLVR 163
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.9 bits (154), Expect = 2e-13
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--- 80
+GL ++GKT L + TG Y + ++ + N L P S+
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 81 -WERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLS--GIPLLVLGNKIDKPGA 136
+R+ + A+V+VVD+A + L+ +L LL+ NK D A
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123
Query: 137 LSKQALTDEM 146
S + + ++
Sbjct: 124 KSAKLIQQQL 133
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (151), Expect = 3e-13
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRS 79
++G GKTSL+N +S T+G V VT+++WD GQ RF+S
Sbjct: 7 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 66
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLL---NKPSLSGIPLLVLGNKIDKPGA 136
+ + R V V D P+ S + L + P +VLGNKID
Sbjct: 67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-- 124
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
++Q T + + F S K + N++ + ++
Sbjct: 125 -NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.9 bits (146), Expect = 1e-12
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFR 78
++G GKTSL++ YS+ T+G + T+++WD GQ RF+
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 66
Query: 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
S+ + R V V D + +N+ R E N S P ++LGNKID
Sbjct: 67 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
+ + L + ++ F+ S KN+ N+D+ + + + + ++
Sbjct: 127 SKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 174
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 2e-12
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID-- 132
+ + + P + R++ + + P++++G K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 133 -------KPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
K +T GL + ++ S + +V D ++
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.4 bits (145), Expect = 3e-12
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 15/168 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+ G QN+GKTSL+ ++ T + + L D G + R
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 84 Y-----CRAVSAIVYVVDAADPDNLSISRSELHDL---LNKPSLSGIPLLVLGNKIDKPG 135
Y I V DP L+ + L D+ +GI +L+ NK +
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 136 ALSKQALTDEMG-----LKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
A + D + + + + ++ +D L
Sbjct: 126 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSM 80
++G GKT L+ A + E+ +PTV + + L+D GQ + +
Sbjct: 14 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 73
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ +P + + E L + +P L++G +ID
Sbjct: 74 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTL 132
Query: 141 ALTDEMGLKSITDRE---------VCCFM-ISCKNSTNIDSVIDWLVK 178
A ++M K I + CC++ S + +V D +
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 14/174 (8%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + +PTV N T+ L+D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ + + P + + + + P L++G +ID
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 135 GALSKQALTDEMGLKSITDRE----------VCCFMISCKNSTNIDSVIDWLVK 178
S + K IT V S + +V D +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 2e-11
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRF-R 78
+IG N GKT L G + + T+G + R+ + + I+LWD GQ RF +
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 66
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
SM + Y R V A+V+V D + + + + + + IP +++GNK D S
Sbjct: 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR---S 123
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
+ ++ K + F S KN + D V
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 157
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 2e-11
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GKT L+ V + + E +PTV N + + V + LWD G + +
Sbjct: 7 IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
I+ PD+L + + +P++++GNK D +
Sbjct: 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTR 125
Query: 141 ALTDEMGLKSITDRE----------VCCFMISCKNSTNIDSVIDWLVK 178
+M + + E S K + V + +
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 3e-11
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ + K+ + + + D GQ F +M
Sbjct: 11 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM 70
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
E+Y RA + V D + + +L P++++GNK D S++
Sbjct: 71 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE---SQR 127
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ V F S K N+D + LV+ +
Sbjct: 128 QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (136), Expect = 4e-11
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQPRFRS 79
L+G GKTSLV +++ I T+G + V + +WD GQ RF +
Sbjct: 8 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + + V D D D+ ++ + +L +V +
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + S K + I+ + L K
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCK 162
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 1e-10
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 7/170 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLW----DLGGQ 74
+ +++ G GK+SLV G + E IPTV R+V + +I G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ + I+ + + K + IP++++GNK D+
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
+ + + S K + N+ + L+ K ++
Sbjct: 122 ---PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 2e-10
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ + + + D GQ F +M
Sbjct: 10 VVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAM 69
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
E+Y R + V D + +L P++++GNK D
Sbjct: 70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT 129
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + +V S K N+D LV+
Sbjct: 130 QEEGQQLARQL---KVTYMEASAKIRMNVDQAFHELVR 164
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 5e-10
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQP 75
+++ ++G GK+S++ G +++D T+G +V +V + LWD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
F ++ + Y R A V V D ++ S + IP ++ NKID
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPTALVQNKIDLL- 119
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ +E ++ + S K N+ V +L +
Sbjct: 120 --DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (127), Expect = 6e-10
Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 8/169 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGG 73
+E+++ L+G GK+S++ + ++ PT+G + + +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFR++ Y R +A + V D + S ++ + +L I + + GNK D
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL 121
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182
+ + + S KN+ NI+ + + + S
Sbjct: 122 T---DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-10
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRS 79
L+G GKT+ V TG + + + T+G + +G + +WD GQ +F
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ + Y + + D + D IP+++ GNK+D K
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD--LVRVCENIPIVLCGNKVDI-----K 120
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + + IS K++ N + WL +
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.4 bits (119), Expect = 7e-09
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 7/159 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTV---GFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G GK++L + D PT+ ++ + + D GQ F +M
Sbjct: 9 VVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM 68
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
E+Y R + V D + +L P++++ NK+D +
Sbjct: 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM---HLR 125
Query: 141 ALTDEMGLKSITDREVCCFMISCKNST-NIDSVIDWLVK 178
+T + G + T + S K+ N+D LV+
Sbjct: 126 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 3/163 (1%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
E+ L ++G +GK+SL++ TG Y +++ T +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
+ + + AV + + D +S +L L + G+ L ++G + +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR-GGLALALVGTQDRISASS 122
Query: 138 SKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
+ D D + C + N+D V + +
Sbjct: 123 PRVV-GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK 164
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 46.6 bits (109), Expect = 2e-07
Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 21/176 (11%)
Query: 21 ELSLIGLQNAGKTSLVNV-----VATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 74
++ L+G NAGK+SL+ Y + P +G L D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGI 59
Query: 75 PRFRSMWE-------RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
S + R+ ++YV+DAAD ++ P+L P LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 128 GNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK+D + +AL D + + + +S + ++ + L +S
Sbjct: 120 LNKVDLLEEEAVKALADALAREGL-----AVLPVSALTGAGLPALKEALHALVRST 170
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.2 bits (108), Expect = 3e-07
Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
++G GKT+L++V A + E+ +PTV N + + + + LWD G P + ++
Sbjct: 7 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 66
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
A++ D + P+ L S + + +L++G K D +S
Sbjct: 67 RPLSYPDSDAVLICFDISRPETLD-SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTL 125
Query: 141 ALTDEMGLKSITDRE----------VCCFMISCKNSTN-IDSVIDWLVKHSKSK 183
++ + S S N + + +K
Sbjct: 126 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 4e-07
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 6/168 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPR 76
E++L++ G GK++LV T + + PT+ R + + ++
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
E + R V V D D + + L + L+++GNK D
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-- 119
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCK-NSTNIDSVIDWLVKHSKSK 183
+ ++ E G K T+ + S NI + L + + +
Sbjct: 120 -HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 6e-07
Identities = 29/167 (17%), Positives = 66/167 (39%), Gaps = 6/167 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74
+ +++++G ++ GK+SL G + + PT+ K+ N ++L D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ + Y ++ + V + + + LL+ IP++++GNK D
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
++ ++ E G S K + V ++ ++
Sbjct: 123 ---MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 5e-06
Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 26/180 (14%)
Query: 23 SLIGLQNAGKTSLVNV-----VATGGYS----EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
G N GK++L+ V G + + + G +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 74 QPRFRSMWERYCR-------------AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
Q R + + A ++ + E + L +
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---L 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLK-SITDREVCCFMISCKNSTNIDSVIDWLVKH 179
IP +V NK+DK + + + +++ + IS K NI+ + + + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 7e-06
Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 23 SLIGLQNAGKTSLVNVV--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
+++G N GK++L+N + + T + + ++
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSE----LHDLLNKPSLSGIPLLVLGNKIDKPGA 136
A + + + + +LNK P+++ NK+D
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ + + ++ IS + N+D++ + KH
Sbjct: 129 KADLLPHLQFLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 169
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 9e-06
Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 27/174 (15%)
Query: 20 MELSLIGLQNAGKTSLVN------VVATGGYSEDMIPTV-------GFNMRKVTKGNVTI 66
+ + ++G N GK++L+N + G R V V
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+ DL + + +A +++V+DA+ P + D + LV
Sbjct: 61 ETNDLVERLGIERTLQEIEKA-DIVLFVLDASSPLD-------EEDRKILERIKNKRYLV 112
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
+ NK+D ++++ + +++G + IS ++ + + + + +
Sbjct: 113 VINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 160
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 2e-05
Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 13/175 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLW 69
+++ + LIG Q GK++L N+ A S D V TI L
Sbjct: 3 YYR----VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLG 128
D+ +C V +V + S L IP++++G
Sbjct: 59 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK D + S N+ + + +V+ + +
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVF---DCKFIETSAAVQHNVKELFEGIVRQVRLR 170
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 5/162 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVT--IKLWDLGGQPRFRSMW 81
L+G GK++L + + R + + ++D+ Q R +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65
Query: 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141
A V V D + + L +P++++GNK D +
Sbjct: 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV---RSRE 122
Query: 142 LTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ + G + S N+ ++ + +V+ + +
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (95), Expect = 4e-05
Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 30/205 (14%)
Query: 2 GLWEAFLNWLRSLFFKQE---MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF---- 54
G + + + + + + +++ G +GK+S +N + G E+ G
Sbjct: 36 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 95
Query: 55 --NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN-LSISRSELH 111
+ WDL G + Y + Y + ++
Sbjct: 96 MERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA 155
Query: 112 DLLNKPSLSGIPLLVLGNKID---------KPGALSKQALTDEM------GLKSITDREV 156
++ + K+D +P K+ + ++ + E
Sbjct: 156 KAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEP 212
Query: 157 CCFMISCKNST--NIDSVIDWLVKH 179
F++S KN + ++D L+
Sbjct: 213 PIFLLSNKNVCHYDFPVLMDKLISD 237
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 39.1 bits (90), Expect = 9e-05
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 19/177 (10%)
Query: 21 ELSLIGLQNAGKTSLVNV-----VATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 74
++ L+G + GK++L++V Y + P +G T + + DL G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE---TDDGRSFVMADLPGL 59
Query: 75 PR--------FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
R + + + + +
Sbjct: 60 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+K + K + F IS + ++ + ++
Sbjct: 120 QIIVANKMDMPEAAENLEA--FKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 9/167 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVV----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
E++L G N GK+S +N + S T N + + + G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 77 FRSMWERYCRAVSAIV-----YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
+S E + R + + D ++ + GIP++V+ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
DK + D E + S + D + K
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 3e-04
Identities = 17/163 (10%), Positives = 52/163 (31%), Gaps = 2/163 (1%)
Query: 23 SLIGLQNAGKTSLVNVV--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
++G N GK++L N + ED ++ +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ + ++ AD + ++ + + + A + +
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
E+ + + +S +++ N+D++++ ++K + K
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 166
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 37.0 bits (84), Expect = 5e-04
Identities = 19/160 (11%), Positives = 47/160 (29%), Gaps = 3/160 (1%)
Query: 23 SLIGLQNAGKTSLVN-VVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81
+++G N GK++L+N ++ P + ++ + + M
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141
+ + + + ++ + LV I G A
Sbjct: 69 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128
Query: 142 LTDEMGLKSITD--REVCCFMISCKNSTNIDSVIDWLVKH 179
E +K+ + E M+S + + + L+
Sbjct: 129 KYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 168
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 0.001
Identities = 18/160 (11%), Positives = 48/160 (30%), Gaps = 3/160 (1%)
Query: 20 MELSLIGLQNAGKTSLVN-VVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
M++ + G NAGK+SL+N + I ++ + + L +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
+ E + ++ AD + + + +
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ +G+ + + +S + +D + + L +
Sbjct: 122 ADITGETLGMSEVNGHAL--IRLSARTGEGVDVLRNHLKQ 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 184 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.98 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.98 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.98 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.98 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.94 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.93 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.92 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.91 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.9 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.87 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.85 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.84 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.82 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.81 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.81 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.7 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.66 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.5 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.29 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.29 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.27 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.23 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.82 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.59 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.53 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.53 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.45 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.26 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.25 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.11 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.05 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.97 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.87 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.83 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.81 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.8 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.78 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.77 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.71 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.68 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.65 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.64 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.63 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.62 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.59 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.58 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.58 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.58 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.57 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.53 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.51 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.5 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.5 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.5 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.44 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.43 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.38 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.37 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.36 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.36 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.35 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.34 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.33 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.3 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.3 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.3 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.28 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.28 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.27 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.27 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.26 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.25 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.25 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.24 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.23 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.22 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.22 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.21 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.2 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.18 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.15 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.14 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.14 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.14 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.12 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.12 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.11 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.1 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.09 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.08 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.07 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.05 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.03 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.02 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.02 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.99 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.96 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.96 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.96 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.95 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.9 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.86 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.84 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.84 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.83 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.78 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.76 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.73 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.73 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.69 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.54 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.48 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.26 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.26 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.13 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.08 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.07 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.05 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.05 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.03 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.88 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.86 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.84 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.8 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.77 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.7 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.68 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.64 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.52 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.49 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.46 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.39 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.38 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.31 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.3 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.19 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.17 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 95.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.0 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.71 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.7 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.61 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.6 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.55 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.42 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.41 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.01 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.81 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.66 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.56 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.9 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 92.45 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.32 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 91.96 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.09 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 91.06 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.79 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 89.52 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.25 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.16 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 87.47 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 87.18 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.94 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.88 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.83 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.63 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.19 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 86.16 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.04 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.93 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.03 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 82.86 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.84 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.75 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 81.55 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=7.8e-36 Score=201.82 Aligned_cols=163 Identities=67% Similarity=1.205 Sum_probs=150.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+++||+++|++|||||||++++..+.+.....||.+.....+..++..+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 47899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
.+.+++.....++..+.......++|+++|+||.|+.+.....++.+...........++++++||++|+|++++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999888877777899999999999987777888888887777777788999999999999999999998
Q ss_pred Hhh
Q 030008 178 KHS 180 (184)
Q Consensus 178 ~~l 180 (184)
+.+
T Consensus 161 ~~~ 163 (164)
T d1zd9a1 161 QHS 163 (164)
T ss_dssp HTC
T ss_pred Hcc
Confidence 865
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=3.6e-36 Score=206.71 Aligned_cols=178 Identities=32% Similarity=0.607 Sum_probs=151.2
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+|..+++++ ...++++||+++|++|||||||++++.++.+. ...+|.+........++..+.+||+||++.+...+.
T Consensus 3 ~~~~~~~~l--~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (182)
T d1moza_ 3 IFSSMFDKL--WGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 79 (182)
T ss_dssp HHHHHHGGG--TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred hHHHHHHHH--hCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhHH
Confidence 556666554 23578999999999999999999999876664 456788888888888999999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.++..++++++|+|++++.++.....++...+......+.|+++|+||+|+.+....+++.+.+.........+++++||
T Consensus 80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S 159 (182)
T d1moza_ 80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 159 (182)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 99999999999999999999999988888887776667899999999999987777888888887776677778999999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|+||++++++|.+.+.++
T Consensus 160 A~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 160 AIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999998765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=4.7e-35 Score=198.10 Aligned_cols=165 Identities=33% Similarity=0.614 Sum_probs=145.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+++||+++|++|||||||+++|.+..+ ....+|.+.....+..++..+.+||+||++.++..+..++..++++++|+|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 79 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 79 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec
Confidence 468999999999999999999987765 4678889988888999999999999999999998999999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
.+..++.....++...+......++|+++|+||+|+.+.....+....+.........+++++|||++|+||++++++|.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 159 (165)
T d1ksha_ 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159 (165)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999888888877766667899999999999987777777777766655566678899999999999999999999
Q ss_pred HhhhcC
Q 030008 178 KHSKSK 183 (184)
Q Consensus 178 ~~l~~~ 183 (184)
+.+.+|
T Consensus 160 ~~i~~r 165 (165)
T d1ksha_ 160 DDISSR 165 (165)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=5.5e-35 Score=199.24 Aligned_cols=169 Identities=32% Similarity=0.628 Sum_probs=149.1
Q ss_pred HHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
+++++.++++||+++|++|||||||++++.++... ...+|.+............+.+||+||++.+...+..+++++++
T Consensus 4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 82 (173)
T d1e0sa_ 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 82 (173)
T ss_dssp HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCE
T ss_pred hhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccce
Confidence 34556788999999999999999999999877654 45677777777788888999999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+++|+|+++.+++.....++...+........|+++|+||+|+.+.....++...+.........+++++|||++|+||+
T Consensus 83 ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~ 162 (173)
T d1e0sa_ 83 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162 (173)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence 99999999999999999998888776666789999999999998877888888888777777778889999999999999
Q ss_pred HHHHHHHHhh
Q 030008 171 SVIDWLVKHS 180 (184)
Q Consensus 171 ~l~~~i~~~l 180 (184)
++|++|.+.+
T Consensus 163 e~~~~l~~~~ 172 (173)
T d1e0sa_ 163 EGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=2e-34 Score=196.87 Aligned_cols=164 Identities=31% Similarity=0.592 Sum_probs=144.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.++++||+++|++|||||||++++.++.+. ...++.+.....+..++..+.+||++|++.+...+..+++.++++++|+
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 91 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence 357899999999999999999999987764 4456677777888888999999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++..++.....++..+.......++|+++|+||+|+.+......+.+...........+++++|||++|+|++++|++
T Consensus 92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~ 171 (176)
T d1fzqa_ 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 171 (176)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999888888877766678999999999999887777777777776666667788999999999999999999
Q ss_pred HHHhh
Q 030008 176 LVKHS 180 (184)
Q Consensus 176 i~~~l 180 (184)
|++.+
T Consensus 172 l~~~i 176 (176)
T d1fzqa_ 172 VCKNV 176 (176)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=194.67 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.+..+... .++....+ ..+. .....+.+||+||++.+...+..+++++|++++|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 7999999999999999999997765433 34444332 2333 344789999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+........+|+++|+||+|+.+... ..+. +. .....++++++|||++|.||+++|+
T Consensus 81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~----~~~~~~~~~~e~Sak~~~~v~~~f~ 155 (168)
T d2gjsa1 81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG-RA----CAVVFDCKFIETSAALHHNVQALFE 155 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHH-HH----HHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred ccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHH-HH----HHHhcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999988876655556789999999999865322 1111 11 1223345799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|++.+.++
T Consensus 156 ~l~~~i~~~ 164 (168)
T d2gjsa1 156 GVVRQIRLR 164 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=2.8e-34 Score=194.79 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=128.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+-+||+++|++|+|||||+++++.+.+...+.||.+..+.. +. .....+.+||++|++++......++++++++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 35799999999999999999999999988888888865432 33 3447889999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++.... .+..++++++|||++|.||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~ 157 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHHH
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHH-----HHHcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999998888765555789999999999986432 22222211 2223457999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|+.|++.+.+|
T Consensus 158 f~~l~~~i~~r 168 (168)
T d1u8za_ 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCc
Confidence 99999988664
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-34 Score=194.99 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=128.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++||+++|++|+|||||+++++++.+...+.+|.+..+.. .. .....+.+||++|++.+......+++.++++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 47899999999999999999999999888888998855433 22 3336788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNK-PSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+++++++..+..|+..+... .....+|+++|+||+|+.+.. ..++.. .+ .+..++++++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~-~~----~~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-AL----ARTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHH-HH----HHHcCCeEEEEcCCCCcCHHH
Confidence 9999999999998888766542 233578999999999985432 222211 11 123345799999999999999
Q ss_pred HHHHHHHhhhcCC
Q 030008 172 VIDWLVKHSKSKS 184 (184)
Q Consensus 172 l~~~i~~~l~~~~ 184 (184)
+|+.|++.+.++.
T Consensus 156 ~f~~l~~~~~~~~ 168 (171)
T d2erxa1 156 LFQELLNLEKRRT 168 (171)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887663
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=195.53 Aligned_cols=162 Identities=20% Similarity=0.312 Sum_probs=130.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.+||+++|++|||||||+++++++.+...+.+|..... ..+..+ .+.+.+||++|++++...+..++++++++++
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence 4679999999999999999999999998887777765332 233333 4778899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.........|+++|+||+|+.+... .++.. .+ ....++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~e~Sak~g~gv~e 158 (173)
T d2fn4a1 84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AF----GASHHVAYFEASAKLRLNVDE 158 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHH
T ss_pred ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhh-HH----HHhcCCEEEEEeCCCCcCHHH
Confidence 999999999999999988876554456789999999999864322 22211 11 122345799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.|++.+.++
T Consensus 159 ~f~~l~~~i~k~ 170 (173)
T d2fn4a1 159 AFEQLVRAVRKY 170 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=189.89 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=131.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-E--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++||+++|++|||||||++++..+.+...+.+|.+..... + ......+.+||++|++.+...+..++++++++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 57899999999999999999999999988888888754432 2 24557899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.........|+++|+||+|+..... .++...... ....+++++|||++|.||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999998887654556799999999999865322 222221111 123457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.|++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-33 Score=187.65 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++||+++|++|||||||+++|+++.+...+.+|.+..+.. +. .....+.+||++|++.+......+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 56999999999999999999999999988888888854433 22 2347799999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|++++.+++.+..|+..+.......++|+++|+||+|+.+.....+....+ .+..++++++|||++|.||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----ARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHH----HHHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHH----HHHhCCeEEEEcCCCCcCHHHHHH
Confidence 9999999999999998887665555679999999999986543322222222 122345799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|++.+.++
T Consensus 158 ~i~~~i~~~ 166 (166)
T d1ctqa_ 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.4e-33 Score=191.52 Aligned_cols=161 Identities=20% Similarity=0.367 Sum_probs=128.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|++|||||||++++.++.+.....++.+..... +.. ....+.+|||||++.+..++..+++++|+++
T Consensus 3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i 82 (169)
T d3raba_ 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 346899999999999999999999998888877777744332 333 3468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+.+++++.....++...... .....|+++|+||+|+.+... .++... + .+..++++++|||++|.||+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gv~ 156 (169)
T d3raba_ 83 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-L----ADHLGFEFFEASAKDNINVK 156 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHH-H----HHHcCCEEEEecCCCCcCHH
Confidence 999999999999988888766433 345789999999999865322 222211 1 12234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|++.+.+|
T Consensus 157 e~f~~l~~~i~ek 169 (169)
T d3raba_ 157 QTFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=192.26 Aligned_cols=163 Identities=19% Similarity=0.276 Sum_probs=127.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.+.+||+++|++|||||||+++++++.+...+.+|.+.... .+.. ..+.+.+||++|.+.+......+++.+|+++
T Consensus 2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (171)
T d2erya1 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFL 81 (171)
T ss_dssp CCCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEE
Confidence 356799999999999999999999999888888888774332 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.........|+++|+||+|+.+. ...++.... .+..++++++|||++|.||+
T Consensus 82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~i~ 156 (171)
T d2erya1 82 LVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL-----ARQLKVTYMEASAKIRMNVD 156 (171)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH-----HHHTTCEEEECBTTTTBSHH
T ss_pred EeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH-----HHHcCCEEEEEcCCCCcCHH
Confidence 99999999999999998887766555567999999999998643 222222211 12234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|++.+.+.
T Consensus 157 e~f~~l~~~i~k~ 169 (171)
T d2erya1 157 QAFHELVRVIRKF 169 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-33 Score=191.86 Aligned_cols=161 Identities=20% Similarity=0.268 Sum_probs=130.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|++|||||||++++.++.+...+.+|.+..+.. +. .....+.+||++|++.+......++++++++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 57999999999999999999999999888888887744332 22 3447889999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCC-CHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNST-NIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~ 171 (184)
||+++++++..+..|+..+.+.......|+++|+||+|+..... .++.. .+ .+..++++++|||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~-~~----~~~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK-EM----ATKYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHH-HH----HHHHTCCEEEEBCSSSCBSHHH
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHH-HH----HHHcCCEEEEEcCCCCCcCHHH
Confidence 99999999999999988877665556799999999999865422 22221 11 12234579999999876 9999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|..|++.+.++
T Consensus 158 ~F~~l~~~i~~~ 169 (169)
T d1x1ra1 158 TFHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-34 Score=192.30 Aligned_cols=159 Identities=18% Similarity=0.317 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++||+++|++|||||||+++++++.+...+.+|.+..... .. .....+.+||++|++.+......++++++++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 67999999999999999999999999888888888744322 22 3347889999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++. ..+ .+..++++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG-RAL----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH-HHH----HHHcCCeEEEECCCCCcCHHHH
Confidence 99999999999999988876655556799999999999864322 2211 111 1223457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.|++.+.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=191.29 Aligned_cols=158 Identities=22% Similarity=0.400 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|+|||||+++++++.+...+.||++....... .....+.+||++|++.+...+..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 579999999999999999999999988888899986554432 2458899999999999998899999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++++++..+..|+..+.... .++|+++|+||+|+.+....++.. ......++++++|||++|.||+++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999988776543 479999999999987654332211 12233456899999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|.+.+.++
T Consensus 156 ~l~~~l~~~ 164 (170)
T d1i2ma_ 156 WLARKLIGD 164 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHccC
Confidence 999877643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-34 Score=193.80 Aligned_cols=160 Identities=18% Similarity=0.286 Sum_probs=130.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.+||+++|++|+|||||+++++++.+...+.||.+..+.. +. .....+.+||++|.+.+..+...++.++|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 467899999999999999999999999888888888865432 33 334778899999999998888889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|||+++++++..+..|+..+........+|+++|+||+|+.... ..++.. .+ .+..++++++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~-~~----a~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK-AL----AESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHH-HH----HHHcCCEEEEEecCCCCCHHH
Confidence 99999999999999998888765555679999999999986432 222221 11 123345799999999999999
Q ss_pred HHHHHHHhhh
Q 030008 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~l~ 181 (184)
+|+.|++.+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-33 Score=189.39 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+.||+++|++|+|||||++++.++.+...+.||.+..... .......+.+||++|++.+...+..++++++++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4789999999999999999999999988888888744322 2344578999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---------ccc-CcceeEEEeeecC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---------SIT-DREVCCFMISCKN 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~Sa~~ 165 (184)
|++++++|.....++....... ..+.|+++|+||+|+.+.....+........ ..+ ....+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999887777665543 2579999999999997532222111111110 001 1224799999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030008 166 STNIDSVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~ 181 (184)
|.||+++|+.+.+.+.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-33 Score=186.73 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.++.+...... . .....+.+||++|++.+...+..++..++++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 6899999999999999999999999888888887554432 2 33478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++..+ .....++++++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHH-----HHHHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999988766442 25789999999999864322 222211 112234579999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.|+-
T Consensus 155 ~~i~~~l~g 163 (164)
T d1yzqa1 155 RRVAAALPG 163 (164)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhhCC
Confidence 999998863
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-33 Score=189.46 Aligned_cols=156 Identities=21% Similarity=0.396 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|+|||||+++|.++.+...+.+|.+..... ... ....+.+||++|++++......++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999999888888888754433 222 347789999999999998899999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..+|+++|+||+|+.+.. ..++. +.+ .+..++++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEA-EGL----AKRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhh-HHH----HHHcCCEEEEeccCCCcCHHHH
Confidence 99999999999988888776432 468999999999986432 22222 111 1223457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.|++.+.
T Consensus 155 f~~l~~~~l 163 (164)
T d1z2aa1 155 FKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.4e-33 Score=189.44 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||+++++++.+...+.||++..+.. .. .....+.+||++|++.+. ....++++++++++|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 6899999999999999999999999988999998865443 22 233789999999998875 4566788999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC-CHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST-NIDSV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
|+++++++..+..++..........+.|+++|+||+|+.+.. ..++..+. .+..++++++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHH-----HHHhCCeEEEEccccCCcCHHHH
Confidence 999999999988765544333334679999999999986432 22222111 12234579999999998 49999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|..|++.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=1.8e-32 Score=185.66 Aligned_cols=158 Identities=20% Similarity=0.336 Sum_probs=128.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--Ee--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--TK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+++||+++|++|+|||||+++|.++.+...+.+|.+...... .. ....+.+||++|++.+...+..+++.++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 679999999999999999999999999888888888655442 22 33567899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+...... .....|+++|+||+|+.+. ...++.. .+ ....++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~SAk~~~nV~e 156 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAK-DY----ADSIHAIFVETSAKNAININE 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHH
T ss_pred EeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHH-HH----HHHcCCEEEEEecCCCCCHHH
Confidence 99999999999998888766543 3367999999999998643 2222221 11 122345799999999999999
Q ss_pred HHHHHHHhhh
Q 030008 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~l~ 181 (184)
+|..|.+.++
T Consensus 157 ~f~~l~~~i~ 166 (167)
T d1z0ja1 157 LFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.9e-33 Score=189.65 Aligned_cols=159 Identities=25% Similarity=0.367 Sum_probs=125.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|||||||+++++++.+.....++.+.... .+.. ..+.+.+|||||++.+...+..++++++++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 4589999999999999999999999888777776664433 3333 34678999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|++++.++.....++..+... .....|+++|+||+|+.+... .++. ..+ ....++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~-~~~----~~~~~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRA-EEF----SEAQDMYYLETSAKESDNVEK 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCCEEECCTTTCTTHHH
T ss_pred eeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHH-HHH----HHhCCCEEEEEccCCCCCHHH
Confidence 99999999999998888877543 235689999999999864322 2221 111 122345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|..|++.+.+
T Consensus 158 ~f~~l~~~l~~ 168 (171)
T d2ew1a1 158 LFLDLACRLIS 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988866543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.6e-32 Score=185.72 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=124.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.-+||+++|++|+|||||++++.++.+.....++...... .... ....+.+||+||++.+...+..+++++|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 3589999999999999999999999888776666654333 2333 34689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++.+++.....++..+... .....|+++|+||+|+.+... .++.... .+..++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGENVED 156 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHH
T ss_pred EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHH-----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999998888776543 335789999999999854322 2222221 122345799999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+|+.|++.+
T Consensus 157 ~f~~i~~~i 165 (166)
T d1z0fa1 157 AFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.2e-32 Score=189.61 Aligned_cols=161 Identities=21% Similarity=0.362 Sum_probs=128.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe------------CcEEEEEEecCCchhhHHhHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~G~~~~~~~~~~ 83 (184)
..+||+++|++|||||||+++++++.+.....+|.+..+.. +.. ....+.+||++|++.+..++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 45899999999999999999999988877777666644322 211 2367999999999999999999
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++++++++++|+|+++++++..+..|+..+.........|+++|+||+|+..... .++..+. .+..++++++|
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~-----~~~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHH-----HHHcCCEEEEE
Confidence 9999999999999999999999999888877766667789999999999864322 2222111 12234579999
Q ss_pred eecCCCCHHHHHHHHHHhhhcC
Q 030008 162 SCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
||++|+||+++|+.|.+.+.++
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999887653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.98 E-value=7.2e-31 Score=176.06 Aligned_cols=160 Identities=29% Similarity=0.592 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+||+++|++|||||||++++.++.+.....++ .............+.+||+||...+......+...++++++|+|..+
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~ 79 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS-SCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccce-eeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC
Confidence 58999999999999999999988876443333 33445566778999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+.++.....++..+.........|+++++||.|+.+.....++.........+..++++++|||++|+||+++|++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence 99999999898888877666789999999999998877888888777777777778899999999999999999999876
Q ss_pred h
Q 030008 180 S 180 (184)
Q Consensus 180 l 180 (184)
|
T Consensus 160 l 160 (160)
T d1r8sa_ 160 L 160 (160)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.2e-32 Score=187.07 Aligned_cols=163 Identities=26% Similarity=0.406 Sum_probs=129.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 579999999999999999999999998888888885443 3443 337899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
||+++++++..+..|+...... .....|+++|+||+|+.+......+.........+..++++++|||++|.||+++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 9999999999998888765543 235689999999999854322111111111122233456899999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.++-
T Consensus 162 ~i~~~i~~ 169 (170)
T d1ek0a_ 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHhcc
Confidence 99988764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.8e-32 Score=185.17 Aligned_cols=160 Identities=23% Similarity=0.346 Sum_probs=130.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||+++|.++.+...+.+|.+...... . .....+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 468999999999999999999999999888888888665442 2 234779999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|..+.+++.....++..+... ...+.|+++|+||+|+.+... ..+..+.+ .....+++++|||++|.||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~----~~~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY----ADDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHH----HHhcCCEEEEeeCCCCCCHHHH
Confidence 99999999999998888877543 335799999999999864322 12222221 1223458999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|++.+.+
T Consensus 160 f~~l~~~i~~ 169 (170)
T d1r2qa_ 160 FMAIAKKLPK 169 (170)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.1e-32 Score=186.75 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=126.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...+||+++|++|+|||||+++++++.+...+.+|++..... +. ...+.+.+||++|++.+...+..+++++|++++
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il 86 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 86 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence 456899999999999999999999999888888888744332 22 344788999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------Cccc-CcceeEEEeee
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSIT-DREVCCFMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~Sa 163 (184)
|||++++++|.....++....... ..+.|+++|+||+|+.+............. ...+ ...++|++|||
T Consensus 87 v~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA 165 (185)
T d2atxa1 87 CFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 165 (185)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred ccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence 999999999998877776665543 357999999999998753222111111100 0011 11257999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.||+++|+.+++.+.
T Consensus 166 k~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 166 LTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc
Confidence 999999999999988753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.98 E-value=5.1e-31 Score=179.82 Aligned_cols=174 Identities=26% Similarity=0.495 Sum_probs=142.8
Q ss_pred HHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhc
Q 030008 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 86 (184)
|+..+++++.++++||+++|.+|||||||++++.++.+. ...++.+.........+..+.++|+++.+.....+..++.
T Consensus 3 ~~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 81 (177)
T d1zj6a1 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 81 (177)
T ss_dssp HHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHT
T ss_pred hHHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceeEEEEeecceEEEEeccccccccccchhhhhc
Confidence 344455667789999999999999999999999987765 3344555566667778899999999999999888999999
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.++++++++|.++.+++.....+.............|+++|+||+|+.......+..............++++++||++|
T Consensus 82 ~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg 161 (177)
T d1zj6a1 82 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 161 (177)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred cceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCC
Confidence 99999999999999998887766666666655578999999999999877777888888877766777889999999999
Q ss_pred CCHHHHHHHHHHhhh
Q 030008 167 TNIDSVIDWLVKHSK 181 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~ 181 (184)
+|+++++++|.+.++
T Consensus 162 ~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 162 EGLCQGLEWMMSRLK 176 (177)
T ss_dssp BTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-32 Score=186.84 Aligned_cols=159 Identities=25% Similarity=0.327 Sum_probs=121.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|||||||++++.++.+...+.+|.+..... .. .....+.+||++|++.+...+..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 46899999999999999999999999998888888855443 22 234889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++... ..+..++++++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-----~a~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHH-----HHHHcCCeEEEEecCCCcCHHH
Confidence 999999999999998887664332 2468999999999986432 2222221 1222345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|++.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-32 Score=186.59 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=128.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|||||||++++..+.+...+.+|.+...... . .....+.+||+||++++...+..+++.++++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 458999999999999999999999998888888877654432 2 334679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|.++++++..+..++..+.... ..++|+++|+||+|+...... .+....+ .....+++++|||++|.||+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEA 158 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHHH
Confidence 999999999999988888776543 357999999999998543221 1111111 1223467999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.+.+.+.+
T Consensus 159 f~~l~~~i~~ 168 (174)
T d2bmea1 159 FVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.3e-31 Score=181.01 Aligned_cols=162 Identities=20% Similarity=0.367 Sum_probs=131.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.+||+++|++|+|||||++++.++.+.....++.+.... .+.. ....+.+|||||++.+..++..++..++++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999999988777777664433 3333 44679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++.....++..+.........|+++++||.|.............+ .+..++++++|||++|+||+++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~tg~gv~e~f 161 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAF 161 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHH----HHHCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999988777666779999999999986543322222221 12234579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.+++.+.+.
T Consensus 162 ~~l~~~l~~~ 171 (177)
T d1x3sa1 162 EELVEKIIQT 171 (177)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHccC
Confidence 9999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-31 Score=185.27 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE-E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~-~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|++|+|||||+++++.+.+...+.||.+...... . .....+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 468999999999999999999999999888888888554332 2 2346899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcc-cCcceeEEEeeec
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSI-TDREVCCFMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~ 164 (184)
||+++++||..+..|+....... ..+.|+++|+||+|+.+.....+...... .... .....+|++|||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999999999987776655442 35799999999999864321111000000 0001 1133579999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+|.||+++|+.+...+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TCTTHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999887654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.4e-32 Score=184.90 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=126.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-E--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.+||+++|++|||||||+++|+++.+...+.+|++..... + ......+.+||++|++.+...+..+++.++++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 678999999999999999999999999888888888744332 3 2344778999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH-HhHhCcCc--------c-cCcceeEEEeee
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQAL-TDEMGLKS--------I-TDREVCCFMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~-~~~~~~~~--------~-~~~~~~~~~~Sa 163 (184)
|+|++++++|..+..++....... ..++|+++|+||+|+.+.....+. ........ . ....++|++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999876665554432 356899999999998643221111 11111000 0 112357999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.||+++|+.|++.+.+
T Consensus 162 k~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 9999999999999987643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.2e-32 Score=185.42 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
-+||+++|++|||||||++++.++.+...+.++....... .. .....+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999998877766655533222 22 2347899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++++++..+..++..+... ...++|+++|+||+|+..... ..+....+ ....++++++|||++|.||+++|
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~----a~~~~~~~~e~Sa~tg~~V~e~f 157 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAF----AREHGLIFMETSAKTACNVEEAF 157 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHHTCEEEEECTTTCTTHHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHH----HHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999998877654 335789999999999754322 11111111 12234579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
..|.+.+.++
T Consensus 158 ~~i~~~i~~~ 167 (173)
T d2a5ja1 158 INTAKEIYRK 167 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.8e-32 Score=184.12 Aligned_cols=159 Identities=20% Similarity=0.332 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.-+||+++|++|||||||++++.++.+.....++.+.. ...+..+ ...+.+||++|++.+...+..++++++++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 45899999999999999999999998877766666533 3333433 3688999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|.++++++.....++..+..... .++|+++|+||+|+.+... ..+..... ......++++|||++|.|++++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHHH
Confidence 9999999999999998888765433 5689999999999875322 11111111 1123457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.+.+.+.
T Consensus 158 f~~l~~~i~ 166 (175)
T d2f9la1 158 FKNILTEIY 166 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3e-31 Score=179.40 Aligned_cols=160 Identities=24% Similarity=0.397 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
-+||+++|++|+|||||+++++++.+...+.+|.+.... .+. .....+.+|||||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999999988888888775443 343 3347788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++++++..+..++...... .....|++++++|.|+.+.....+....+. ...++++++|||++|+||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHH
Confidence 9999999999888777665543 335688999999999876544333333221 22346799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|++.+.+|
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-30 Score=176.50 Aligned_cols=161 Identities=24% Similarity=0.407 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE-----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
-+||+++|++|||||||+++++++.+...+.+|.+....... .....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 479999999999999999999999888777777664433322 233678999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhc---CCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 94 VVDAADPDNLSISRSELHDLLN---KPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++++.++.....|+..+.. ......+|+++|+||+|+.+... ..+..+.+.. .....++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~e~SA~~g~g 158 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAIN 158 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH---HcCCCeEEEEeCCCCcC
Confidence 9999999999998888776643 23335789999999999864321 1111111111 11234699999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
|+++|+.|.+.+.+
T Consensus 159 v~e~f~~l~~~~l~ 172 (175)
T d1ky3a_ 159 VDTAFEEIARSALQ 172 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886544
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.7e-31 Score=181.70 Aligned_cols=164 Identities=18% Similarity=0.275 Sum_probs=125.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||+++++.+.+...+.||.+..... +. ...+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 5799999999999999999999999988888887743332 33 34578999999999999988889999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------CcccC-cceeEEEeeecC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSITD-REVCCFMISCKN 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~Sa~~ 165 (184)
|+++++||.....++........ ...|+++|+||+|+............... ...+. ...+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999999887776654322 47999999999998542111100000000 00111 224799999999
Q ss_pred CC-CHHHHHHHHHHhhhcC
Q 030008 166 ST-NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~-~v~~l~~~i~~~l~~~ 183 (184)
|. |++++|+.+.+.+.+|
T Consensus 161 ~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 161 SENSVRDIFHVATLACVNK 179 (179)
T ss_dssp BHHHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 98 5999999999887654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-31 Score=185.67 Aligned_cols=159 Identities=25% Similarity=0.383 Sum_probs=127.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.-+||+++|++|||||||++++.++.+...+.+|.+..... +. .....+.+|||||++++..++..++++++++++
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999888888887755433 33 345789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++.....++..+... .....|+++|+||+|+.+... .++..... ....++++++||++|.||++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 99999999999988877766543 346789999999999875322 22222211 22345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|++.+.+
T Consensus 159 ~f~~l~~~i~~ 169 (194)
T d2bcgy1 159 AFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.9e-32 Score=184.10 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=100.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..-+||+++|++|||||||+++++++.+.....+|.+... ..+..+ ...+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 4568999999999999999999998888777777777443 334433 467889999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..++..+... .....|+++|+||.|....... ++.... ....++++++|||++|+||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~g~gv~ 157 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHH-----HHhcCCEEEEEeCCCCCCHH
Confidence 999999999999998888776433 3367999999999998754322 222211 12335679999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|++.+.++
T Consensus 158 e~f~~l~~~i~~k 170 (173)
T d2fu5c1 158 NAFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.6e-30 Score=174.78 Aligned_cols=161 Identities=22% Similarity=0.373 Sum_probs=122.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+-+||+++|++|||||||++++.++.+...+.+|.+..... ... ....+.+||++|+.........++..+++++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 83 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence 356899999999999999999999999988888887754332 222 3477899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHh---cCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLL---NKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|.+++.++..+..|+..+. ......+.|+++|+||+|+.+... .++.. .+.. ....++|++|||++|.|
T Consensus 84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~-~~~~---~~~~~~~~e~Sak~~~g 159 (174)
T d1wmsa_ 84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCR---DNGDYPYFETSAKDATN 159 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHH---HTTCCCEEECCTTTCTT
T ss_pred EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHH-HHHH---HcCCCeEEEEcCCCCcC
Confidence 9999999999998888775553 334445689999999999865332 22222 2111 11234799999999999
Q ss_pred HHHHHHHHHHhhh
Q 030008 169 IDSVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~l~ 181 (184)
|+++|+.|++.+.
T Consensus 160 I~e~f~~l~~~il 172 (174)
T d1wmsa_ 160 VAAAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=3.3e-29 Score=169.10 Aligned_cols=168 Identities=35% Similarity=0.662 Sum_probs=146.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+.+++||+++|++|||||||+++++++.+. ...+|.+........+...+.++|.+|...............+++++++
T Consensus 2 m~ke~kI~ivG~~~vGKSSLi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d1upta_ 2 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 80 (169)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhCCCCc-ceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence 357899999999999999999999988876 3456777777777888999999999999999888888899999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+.+..++.....++............|+++|+||.|+.......++.............+++++|||++|+||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~ 160 (169)
T d1upta_ 81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 160 (169)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 99998888888777777666666677999999999999988777778777766666677789999999999999999999
Q ss_pred HHHhhhcCC
Q 030008 176 LVKHSKSKS 184 (184)
Q Consensus 176 i~~~l~~~~ 184 (184)
|.+.+.+|+
T Consensus 161 l~~~l~~k~ 169 (169)
T d1upta_ 161 LVETLKSRQ 169 (169)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhCC
Confidence 999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=6.7e-31 Score=180.51 Aligned_cols=160 Identities=24% Similarity=0.397 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|.+|||||||+++++++.+...+.+|.+....... .....+.+||++|+......+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 68999999999999999999999998888888886554432 34578999999999998888888999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|..+..++..+..|+..+... ....++|+++|+||+|+.+.....+....+. .....+++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 999999998888877655432 3334689999999999876443332222221 1233567999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|++.+.+
T Consensus 160 f~~l~~~i~~ 169 (184)
T d1vg8a_ 160 FQTIARNALK 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.4e-31 Score=179.25 Aligned_cols=160 Identities=24% Similarity=0.407 Sum_probs=117.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-CCCccceeEEE--EEeC--cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-MIPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
...+||+++|++|||||||+++++++.+... ..++.+..... +... ...+.+|||||++.+...+..+++++|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 3468999999999999999999998887544 45555544433 3333 36789999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++.....++....... ....|+++|+||+|+..... .++.... .+..++++++|||++|.||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGLNV 157 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred EEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHH-----HHHcCCEEEEEeCCCCcCH
Confidence 99999999999999988887765443 35689999999999875422 2222111 1223457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|+.|++.+.+
T Consensus 158 ~e~f~~l~~~i~k 170 (170)
T d2g6ba1 158 DLAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988753
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-29 Score=172.04 Aligned_cols=156 Identities=15% Similarity=0.255 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++||+++|++|+|||||+++++++.+.... +|.... ...+.. ....+.+||++|++.+. +++.+|++++|
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV 77 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV 77 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-CccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence 5799999999999999999999999886544 444433 333443 34779999999987653 57789999999
Q ss_pred EeCCCcCcHHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 95 VDAADPDNLSISRSELHDLL--NKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
||++++++|..+..|...+. ........|+++|+||.|+...... .+..+.+ ......++|++|||++|.|+
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~---~~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL---CADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHH---HHTSTTEEEEEEBTTTTBTH
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHH---HHHhCCCeEEEeCCCCCcCH
Confidence 99999999999887776653 3333456899999999987432221 1111111 11224567999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|..+++.+.+
T Consensus 155 ~~~F~~l~~~i~~ 167 (175)
T d2bmja1 155 DRVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-30 Score=176.50 Aligned_cols=162 Identities=18% Similarity=0.167 Sum_probs=117.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccce--eEEEEEe--CcEEEEEEecCCchh-hHHhHHHHhccCCEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGF--NMRKVTK--GNVTIKLWDLGGQPR-FRSMWERYCRAVSAI 91 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~--~~~~~~~--~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~i 91 (184)
..+||+++|++|+|||||++++....... ...+|.+. ....+.. ....+.+||+++... .......+++++|++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ 81 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence 46899999999999999999999766532 23344432 2233333 346778999875322 122456678999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|||+++++++..+..|+..+.......++|+++|+||+|+.+... .++. +. .....++++++|||++|.||
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~----~a~~~~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RA----CAVVFDCKFIETSAAVQHNV 156 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HH----HHHHHTCEEEECBTTTTBSH
T ss_pred eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HH----HHHHcCCeEEEEeCCCCcCH
Confidence 99999999999999999988887665556899999999999864322 2221 11 12233467999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 030008 170 DSVIDWLVKHSKSKS 184 (184)
Q Consensus 170 ~~l~~~i~~~l~~~~ 184 (184)
+++|+.|++.+..++
T Consensus 157 ~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 157 KELFEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999886653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.3e-30 Score=173.99 Aligned_cols=153 Identities=26% Similarity=0.457 Sum_probs=120.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHH-hHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii~ 93 (184)
-+||+++|++|||||||++++.++.+.....++.+.... . +......+.+||++|...... .+..+++++|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 479999999999999999999999988887777764432 2 334457899999999877754 46778899999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecC---CCC
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKN---STN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 168 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++. +.+ .+..++++++|||++ ++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAkt~~~~~~ 156 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKF----ADTHSMPLFETSAKNPNDNDH 156 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCCEEECCSSSGGGGSC
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHH-HHH----HHHCCCEEEEEecccCCcCcC
Confidence 99999999999999999888766666789999999999986532 22222 111 122345799999987 559
Q ss_pred HHHHHHHH
Q 030008 169 IDSVIDWL 176 (184)
Q Consensus 169 v~~l~~~i 176 (184)
|+++|+.|
T Consensus 157 V~e~F~~l 164 (165)
T d1z06a1 157 VEAIFMTL 164 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.3e-27 Score=159.21 Aligned_cols=157 Identities=35% Similarity=0.629 Sum_probs=134.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++|+|||||+|++.++.+. ...||.+.........+....++|++|..........+...++++++++|..+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 80 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence 7999999999999999999988875 567888888888888888999999999999988899999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-------cCcceeEEEeeecCCCCHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-------TDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
..+.....++..........+.|+++++||.|+.......++......... ....+++++|||++|+|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~ 160 (166)
T d2qtvb1 81 ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160 (166)
T ss_dssp GGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred hhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence 888888888887777777788999999999999876666666666543322 2345689999999999999999
Q ss_pred HHHHH
Q 030008 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 161 ~~l~~ 165 (166)
T d2qtvb1 161 QWLSQ 165 (166)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.95 E-value=9.1e-27 Score=159.28 Aligned_cols=171 Identities=32% Similarity=0.602 Sum_probs=130.9
Q ss_pred HHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhc
Q 030008 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 86 (184)
++.++ .+.+++.||+++|++|||||||++++.++.+. ...++.+.....+...+..+.++|++++............
T Consensus 3 ~~~~~--~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
T d1f6ba_ 3 VLQFL--GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP 79 (186)
T ss_dssp HHHHH--TCTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG
T ss_pred hHHhc--cccCCCCEEEEECCCCCCHHHHHHHHhCCCCc-ceecccccceeEEEecccccccccccchhhhhhHHhhhhc
Confidence 44454 24588999999999999999999999977765 3456666666777788889999999999988888888899
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc------------ccCc
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS------------ITDR 154 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~ 154 (184)
..+.+++++|+.+...+......+..........+.|+++++||.|+.......++........ ....
T Consensus 80 ~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T d1f6ba_ 80 AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR 159 (186)
T ss_dssp GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred ccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcC
Confidence 9999999999999988887777666666666667899999999999987666666555554321 1233
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.+++++|||++|+|++++|++|.+++
T Consensus 160 ~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 160 PLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999876
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=5.3e-27 Score=160.04 Aligned_cols=157 Identities=20% Similarity=0.173 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 87 (184)
.-.|+++|++|+|||||+|+|++... ...+..|...........+..+.++||||... +......++.+
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 34799999999999999999997654 33444555566666778889999999999633 23334556789
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++.... ..++...+... ..++|+++|+||+|+.... ++..+.+... .....++++||++|.
T Consensus 85 ad~il~v~D~~~~~~~~--~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhccc--ccchhhheecc-ccchhhhhhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCCC
Confidence 99999999998875433 23344443322 2468999999999996532 2222222211 122358899999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|+++|++.|.+.+++.
T Consensus 157 gi~~L~~~i~~~lpe~ 172 (178)
T d1wf3a1 157 QVAELKADLLALMPEG 172 (178)
T ss_dssp HHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999988753
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=3.2e-26 Score=153.54 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh--------HHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~ 87 (184)
.++|+++|++|||||||+|+|++.+.. ..+.++.......+...+..+.++|+||.... ......++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 379999999999999999999976643 23344444555667788899999999994322 1223455788
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++++|..+..++.....+...+... ...+|+++|+||+|+.+... ........+++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCT
T ss_pred ccccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCC
Confidence 99999999999887665554332222222 13689999999999864322 1122345689999999999
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
|++++++.|.+.+
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.94 E-value=4.8e-26 Score=155.35 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC---------ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP---------TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~---------t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
-+.++|+++|++|+|||||+|+|++......... +.......+...+..+.++|+||+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 3678999999999999999999995432211111 1112222345677889999999999999989999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH---HHhHhCcCcccCcceeEEEeeec
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA---LTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++++|+.++..... ...+..+.. .++|+++|+||+|+........ ..+............+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 999999999998753322 222222222 3689999999999975433221 12222111122334579999999
Q ss_pred CCCCHHHHHHHHHHhhhcC
Q 030008 165 NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~~ 183 (184)
+|+|++++++.|.+.+++.
T Consensus 158 ~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TCTTHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhcCCcc
Confidence 9999999999999988764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=8.8e-27 Score=161.33 Aligned_cols=164 Identities=20% Similarity=0.295 Sum_probs=127.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+++||+++|..|||||||++++..+.+. +.||++.....+......+.+||++|++.++..+..+++.++++++|+|.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~ 78 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVAL 78 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeec
Confidence 5799999999999999999999977763 57999998888888999999999999999999999999999999999999
Q ss_pred CCcCc----------HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----C--------------HHH----HH-h
Q 030008 98 ADPDN----------LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----S--------------KQA----LT-D 144 (184)
Q Consensus 98 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~--------------~~~----~~-~ 144 (184)
.+.++ +......+..++......+.|+++++||.|+.... . ... +. .
T Consensus 79 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (200)
T d2bcjq2 79 SEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158 (200)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHH
T ss_pred cchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHH
Confidence 87642 33334555566655555789999999999974211 0 100 11 1
Q ss_pred HhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
...........+.+++|||++|.||+++|+.+.+.+.++
T Consensus 159 f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 111222334557789999999999999999998887653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=6.3e-27 Score=161.45 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=122.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+++||+++|+.|||||||+++|....+ +|.+.....+......+.+||++|++.+...+..+++.++++++|+|.
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~ 75 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 75 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEee
Confidence 479999999999999999999985543 566677777888999999999999999999999999999999999999
Q ss_pred CCcCcH----------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-----------------CCHHHH----HhHh
Q 030008 98 ADPDNL----------SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-----------------LSKQAL----TDEM 146 (184)
Q Consensus 98 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----------------~~~~~~----~~~~ 146 (184)
++.+++ ......+..++........|+++++||+|+... ....+. ...+
T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (195)
T d1svsa1 76 SDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF 155 (195)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH
T ss_pred cccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH
Confidence 877644 233455666666666678999999999996321 011111 1111
Q ss_pred Cc--CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 147 GL--KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 147 ~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
.. .......+++++|||+++.||+++|+.+.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 11 11223456788999999999999999998887654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.1e-25 Score=152.47 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch---------hhHHhHHHHhccC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP---------RFRSMWERYCRAV 88 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~---------~~~~~~~~~~~~~ 88 (184)
+|+++|++|||||||+|+|++.... ..+..|.......+......+.++|+||.. .........+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6899999999999999999965542 345556666777788888999999999932 1233344567889
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+++++.|...+..... ..+...+.. .++|+++|+||+|+.+....+...+... ....+++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeEEEecCCCCC
Confidence 99999999987654332 222222222 3689999999999874322222222211 1223578999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.++++
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999876
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.9e-25 Score=153.20 Aligned_cols=162 Identities=19% Similarity=0.104 Sum_probs=110.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh------------HHh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------------RSM 80 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------------~~~ 80 (184)
.++.++|+++|++|+|||||+|++++... .....+|.......+..++..+.++|+||.... ...
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 35679999999999999999999997653 334445555555667778889999999995432 234
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCC 158 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (184)
....++.+|++++|+|+..+..... ..+...+.. .+.|+|+|+||+|+..... ..++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccchhhH--HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 5566788999999999987643222 222222222 3689999999999864432 33444333333233345579
Q ss_pred EEeeecCCCCHHHHHHHHHHhhhc
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++||++|.|+++|++.|.+.+.+
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=5.4e-25 Score=147.35 Aligned_cols=146 Identities=15% Similarity=0.242 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCch--------hh-HHhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP--------RF-RSMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~--------~~-~~~~~~~~~~ 87 (184)
+||+++|.+|+|||||+|+|++... ...+..|.......+...+..+.+|||||.. .. .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 5899999999999999999997653 3344455556666777888999999999932 11 1334445788
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++.......-+ . .. ...++++++||.|+.+....+++...+.. ..+++++||++|+
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~-~-~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKIL-E-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHH-H-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhh-h-hc-----ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence 9999999999988755443221 1 22 35789999999999988777777766643 2368999999999
Q ss_pred CHHHHHHHHHH
Q 030008 168 NIDSVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|+++|++.|.+
T Consensus 148 gi~~L~~~I~k 158 (160)
T d1xzpa2 148 GLEKLEESIYR 158 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999999865
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=1.1e-25 Score=154.05 Aligned_cols=155 Identities=20% Similarity=0.272 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccceeEEEEEeCcEEEEEEecCCch-----------h----hHHhHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQP-----------R----FRSMWER 83 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----------~----~~~~~~~ 83 (184)
+|+++|.+|+|||||+|++++...... +..|.... .+...+ +.++||||.. . .......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--cccccc--ceecccCCceeccccccccccccchhhhhhhhh
Confidence 689999999999999999998765432 33454432 233343 6789999941 1 1222344
Q ss_pred HhccCCEEEEEEeCCCcCcHHH---------HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCccc
Q 030008 84 YCRAVSAIVYVVDAADPDNLSI---------SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSIT 152 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~ 152 (184)
..+.+|++++|+|+........ ....+...+.. .++|+++|+||+|+.+.... ..+...+.. ...
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~ 153 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLS 153 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGG
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccc
Confidence 5678999999999975421111 11111222222 36899999999998743221 122222222 222
Q ss_pred CcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 153 DREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
.....++++||++|.|+++|++.|.+.++++
T Consensus 154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 154 EIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 3344689999999999999999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=3.4e-25 Score=151.17 Aligned_cols=155 Identities=25% Similarity=0.308 Sum_probs=104.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE-eCcEEEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
.|+++|.+|||||||+|+|++.... .....|......... ..+..+.+|||||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4899999999999999999866542 223344444444333 4557899999999432 22334556788899
Q ss_pred EEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++++|..... .......++... .....++|+++|+||+|+.+....++..+.+. ..+.+++++||++|+|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence 99999987542 222222222221 11113479999999999986544444333332 2355799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
+++|++.|.+.+++
T Consensus 156 id~L~~~i~~~l~~ 169 (180)
T d1udxa2 156 LPALKEALHALVRS 169 (180)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=4.9e-26 Score=157.70 Aligned_cols=161 Identities=21% Similarity=0.304 Sum_probs=117.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.+||+++|++|||||||++++. +.....||+|.....+..+...+.+||++|++.++..+..+++.++++++++|.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 5899999999999999999994 4456778999988889999999999999999999999999999999999999998
Q ss_pred CcC----------cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC------------------CCHHH----HHhHh
Q 030008 99 DPD----------NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA------------------LSKQA----LTDEM 146 (184)
Q Consensus 99 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~------------------~~~~~----~~~~~ 146 (184)
+.. .+.....++..++......++|+++++||+|+.+. ...+. +...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 764 23445566777777766778999999999997431 01111 11111
Q ss_pred CcC--cccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 147 GLK--SITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 147 ~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
... ......+.++++||+++.||+++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 111 111234567789999999999999999887654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=6.1e-25 Score=151.77 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCccce--eEEE---------------------EEeCcEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----MIPTVGF--NMRK---------------------VTKGNVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----~~~t~~~--~~~~---------------------~~~~~~~~~~ 68 (184)
++.++|+++|++++|||||+++|++...... ...|... .... .......+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 5678999999999999999999985332111 0111111 1111 1122356999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
+|+||+..+.....+.+..+|++++|+|+.++.......+.+...... ...+++++.||+|+.+.....+.......
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999874333333333322211 13568889999999864332222111111
Q ss_pred --CcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 149 --KSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 149 --~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.......++++++||++|+|+++|++.|.+.++
T Consensus 160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 111223568999999999999999999998875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=5.5e-24 Score=146.90 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCccceeEEEEEeCcEEEEEEecCCchh----------h---HHhHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------F---RSMWE 82 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~----------~---~~~~~ 82 (184)
.+|+++|++|||||||+|+|++... ......|......... ..+.+.|+++... . .....
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccchhhhHHhhhh
Confidence 4899999999999999999997543 1222233333332222 2355677776211 1 11222
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.....++++++++|+..+... ....+...+.. .++|+++|+||+|+.+....++..+............+++++|
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~--~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 175 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSN--DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred ccccchhhhhhhhhccccccc--ccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence 344667999999999866332 21222222222 3689999999999986656555554444333344566899999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.|.+.+.
T Consensus 176 A~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999998875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.91 E-value=1.1e-23 Score=146.50 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=107.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC---C--c--cceeEEEE--------------------------EeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI---P--T--VGFNMRKV--------------------------TKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~---~--t--~~~~~~~~--------------------------~~~~ 63 (184)
+++++|+++|+.++|||||+++|++........ . + .+...... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 577999999999999999999998522211000 0 0 00000000 0112
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT 143 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 143 (184)
..+.++|+||+..|.......+..+|++++|+|+.++-......+.+...... ...|+|+++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999988889999999999999998863222223333322221 235899999999997643322211
Q ss_pred hHhCc--CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 144 DEMGL--KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..... .......++++++||++|.|++++++.|..+++.
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 11111 1122345789999999999999999999988763
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.90 E-value=1.3e-23 Score=144.64 Aligned_cols=161 Identities=15% Similarity=0.078 Sum_probs=112.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC-----CC-------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG-----GY-------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~-----~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
+++++|+++|++++|||||++++++. .. .....-|+......+...+..+.++|+||+..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 46899999999999999999999731 00 0111223333445566778899999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHH----hHhCcCcccC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALT----DEMGLKSITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~----~~~~~~~~~~ 153 (184)
....+.+..+|++++|+|+.++-..+ ..+.+...... ...|+|+++||+|+.+.... +.+. ..+.......
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 156 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence 88889999999999999999874322 23333332222 23689999999999753222 2222 2221122233
Q ss_pred cceeEEEeeecCC----------CCHHHHHHHHHHhhh
Q 030008 154 REVCCFMISCKNS----------TNIDSVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~----------~~v~~l~~~i~~~l~ 181 (184)
...|++++||++| .|+.+|++.|.++++
T Consensus 157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 4578999999998 589999999988765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1.6e-23 Score=143.38 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEe-CcEEEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
+|+++|++|+|||||+|+|++.... .....|.......... ++..+.+|||||..+ ........+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999876542 2344555555555554 346799999999522 11223344567899
Q ss_pred EEEEEeCCCcCcHHHH----HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecC
Q 030008 91 IVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++++....+..... ..............++|+++|+||+|+.+.... +.+...+ ..+.+++++||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCC
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCC
Confidence 9888887654322211 111122223344456899999999999753221 2222221 2345789999999
Q ss_pred CCCHHHHHHHHHHhhhcC
Q 030008 166 STNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~~ 183 (184)
|.|+++|++.|.+.+++.
T Consensus 157 g~Gi~~L~~~i~~~L~~~ 174 (185)
T d1lnza2 157 REGLRELLFEVANQLENT 174 (185)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHhhhhC
Confidence 999999999999998753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.6e-24 Score=151.25 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=125.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.+||+++|+.|||||||++++..+. ..||+|.....+..++..+.+||++|++.++..+..++.+++++++|+|
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 567999999999999999999997553 4589998888899999999999999999999999999999999999999
Q ss_pred CCCcC----------cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC------CCHH--------------------
Q 030008 97 AADPD----------NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA------LSKQ-------------------- 140 (184)
Q Consensus 97 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~------~~~~-------------------- 140 (184)
.++.+ ........+..++......++|+++++||+|+.+. ....
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 98542 34445566777887777778999999999997431 1111
Q ss_pred --------------HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 141 --------------ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 141 --------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.............+..+.+||+++.+|+.+|+.+.+.+.+
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 011111111122344567889999999999999887766543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=2.4e-24 Score=152.04 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=101.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEE------------------EEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRK------------------VTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~------------------~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
.|+++|++++|||||+++|++..... ....+....... +..++..+.++||||+..+...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence 49999999999999999998532211 111111111111 2345568999999999998777
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HH---------------H
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QA---------------L 142 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~---------------~ 142 (184)
....+..+|++++|+|+.++-.... ...+..+.. .++|+|+|+||+|+...... .. .
T Consensus 87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred chhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence 7778889999999999987643222 222222222 46899999999998653211 00 0
Q ss_pred H-------hHhCc----------CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 143 T-------DEMGL----------KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 143 ~-------~~~~~----------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
. ..... ........+++++||.+|.|+++|++.|....++
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0 00000 0001234679999999999999999998876643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=9.6e-22 Score=136.70 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=106.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe---CcEEEEEEecCCchhhH-HhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~ii~v~d 96 (184)
+|+++|++|||||||+++|+++.+... .+|.+.....+.. ....+.+||++|++.++ ..+..++..++++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 689999999999999999998877643 4666666555543 45789999999999885 456778899999999999
Q ss_pred CCCcCcH-HHHHHHHHHHhc--CCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc------------------------C
Q 030008 97 AADPDNL-SISRSELHDLLN--KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL------------------------K 149 (184)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~------------------------~ 149 (184)
+.+..+. .....++..++. ......+|+++|+||+|+......+++.+.+.. .
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhh
Confidence 9986543 333444444332 122346899999999999865554443322110 0
Q ss_pred c----------ccCcceeEEEeeecCCCC------HHHHHHHHHHh
Q 030008 150 S----------ITDREVCCFMISCKNSTN------IDSVIDWLVKH 179 (184)
Q Consensus 150 ~----------~~~~~~~~~~~Sa~~~~~------v~~l~~~i~~~ 179 (184)
. .......++++|+.++.| ++++-++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 0 001234688999999886 77777766543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=2.5e-22 Score=139.17 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=100.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC------CCC-------------CCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG------GYS-------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~------~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
+++++|+++|++++|||||+++|+.. ... +...-|+......+..++.++.++||||+..|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 46899999999999999999999721 100 00134555666778888999999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALS-KQ----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.....+.+..+|++++|+|+.++-..+.. +.+..... .++| +++++||+|+.+... .+ ++...+.....
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987544332 22222222 2454 778899999975322 12 22222222222
Q ss_pred cCcceeEEEeeecCC
Q 030008 152 TDREVCCFMISCKNS 166 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~ 166 (184)
.....++++.|+..+
T Consensus 156 ~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 156 PGDEVPVIRGSALLA 170 (204)
T ss_dssp CTTTSCEEECCHHHH
T ss_pred Ccccceeeeeechhh
Confidence 334567899998643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.87 E-value=8.2e-21 Score=132.80 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=101.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC--CC---------------------------------CCCCCccceeEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG--YS---------------------------------EDMIPTVGFNMRKVT 60 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~--~~---------------------------------~~~~~t~~~~~~~~~ 60 (184)
.+..++|+++|++++|||||+.+|+... .. .....|.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 3567899999999999999999996211 00 001112222333455
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCCCCCCCH
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG-IPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~D~~~~~~~ 139 (184)
..+.++.++|+||+..+.....+.+..+|++++|+|+.++...+. .+.+.-... .+ ..+|+++||+|+.+..+.
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL----LGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEEECTTTTTSCHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHH----cCCCEEEEEEEccccccccce
Confidence 677899999999999999999999999999999999988753332 222222211 23 458999999999865432
Q ss_pred --H----HHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 140 --Q----ALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 140 --~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
. ++.............++++++||++|+|+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1 222222222333456789999999999884
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=9.8e-20 Score=123.47 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--HHH-------Hhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--WER-------YCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~-------~~~~ 87 (184)
-.|+++|.+|+|||||+|+|++.+.. .....+..........+...+..+|++|....... ... ....
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 36899999999999999999976643 22223333444555667778888999985433221 111 1245
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+++++++.|..+... ........+.. ...|.++|+||+|..... .................+++++||++|.
T Consensus 86 ~~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 157 (179)
T d1egaa1 86 VELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGL 157 (179)
T ss_dssp EEEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred cceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence 677888888876532 22222223322 357899999999987542 2222222212222334579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|+++|++.|.+.+++.
T Consensus 158 gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 158 NVDTIAAIVRKHLPEA 173 (179)
T ss_dssp THHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999998763
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.2e-20 Score=133.86 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC--CC------------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG--GY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
+--+|+++|+.++|||||+.+++.. .. ......|+......+.+++.+++++||||+..|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 3347999999999999999998721 10 111233555666778899999999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.......++.+|++|+|+|+.++-.... ...|..... .++|.++++||+|...
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH----cCCCEEEEEecccccc
Confidence 9999999999999999999998743222 233333322 4799999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=4.1e-20 Score=128.29 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHH----hccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY----CRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----~~~~~~ii~ 93 (184)
.+.+|+++|++|||||||+|+|+++.+.. ..|.......+..++..+.+||+||++.....+..+ ...++.+++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~--~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~ 79 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 79 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--eEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccce
Confidence 46799999999999999999999876642 234344455566777889999999998775554443 455688899
Q ss_pred EEeCCC-cCcHHHHHHHHHHH---hcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 94 VVDAAD-PDNLSISRSELHDL---LNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 94 v~d~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
++|+.+ ..++.....++... .......++|+++|+||+|+.....
T Consensus 80 ~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 80 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 999864 55566665554322 2233446799999999999976544
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.81 E-value=1.3e-19 Score=127.16 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=97.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC---------------------------------CCCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG---------------------------------YSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~---------------------------------~~~~~~~t~~~~~~~~~~~~ 63 (184)
+++++|+++|+.++|||||+.+|+... .......|.......+..++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 468999999999999999999886200 01122233344444566778
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcH------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL------SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
..+.++||||+..|.......+..+|++++|+|+.++... ....+.+.-.... ...++|+++||+|+....
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSST
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcc
Confidence 8999999999999999999999999999999999986211 1122222211111 235789999999987532
Q ss_pred -CH---HH----HHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 138 -SK---QA----LTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 138 -~~---~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. +. +..............+++++||.+|.|+.+
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 21 11 111111122334556899999999999753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.81 E-value=8.3e-20 Score=130.54 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=83.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC--CC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG--YS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|+.++|||||+.+++... .. .....|+......+.+++.+++++||||+..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 68999999999999999986211 00 01223555666778889999999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
....+..+|++++|+|+.++-.... ...+..... .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchh-HHHHHhhhh----ccccccccccccccc
Confidence 9999999999999999998743333 223333322 469999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.7e-19 Score=121.85 Aligned_cols=164 Identities=17% Similarity=0.100 Sum_probs=90.3
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccc-eeEEEEEeCcEEEEEEecCCc------hhh--HHh
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVG-FNMRKVTKGNVTIKLWDLGGQ------PRF--RSM 80 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~-~~~~~~~~~~~~~~~~D~~G~------~~~--~~~ 80 (184)
++.+..+.++|+++|.+|+|||||+|++++...... ..++.. .........+......+.++. ... ...
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA 88 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence 445566789999999999999999999987654322 112222 222222233333333333331 111 111
Q ss_pred HH---HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc-ccCcce
Q 030008 81 WE---RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS-ITDREV 156 (184)
Q Consensus 81 ~~---~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (184)
.. ........++.+.+......... ...+..... ...++++++||+|+.+..........+.... ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 11 12233445566666665533222 223333322 3578999999999986544333333322211 122345
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhh
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
+++++||++|.|+++|++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998765
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.1e-19 Score=128.29 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCC-------------------------------CCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGY-------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
+++++|+++|+.++|||||+.+|+. +.. .+...-|+......+...+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 4679999999999999999999862 000 0113345556677788889
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc------HHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN------LSISRSELHDLLNKPSLSGI-PLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~ 136 (184)
.++.++|+||+..|.....+.+..+|++++|+|+..+.- .....+.+..... .++ ++|+++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999986521 0112222222211 234 58899999999765
Q ss_pred CCH--HH----HHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 137 LSK--QA----LTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 137 ~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
... ++ +...+..........+++++|+.+|.|+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 332 12 2222211122233567899999999886
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.80 E-value=5.6e-20 Score=130.48 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=90.3
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCC---------------------------------CCCCCCCccceeEEE
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGG---------------------------------YSEDMIPTVGFNMRK 58 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~---------------------------------~~~~~~~t~~~~~~~ 58 (184)
+....++.++|+++|+.++|||||+.+|+..- .......++......
T Consensus 17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~ 96 (245)
T d1r5ba3 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 96 (245)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence 34455678899999999999999999995200 001111222223334
Q ss_pred EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcH------HHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 59 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL------SISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 59 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+.....++.++|+||+..+.....+....+|++++|+|+.++.-. ....+.+.-.... ...++++++||+|
T Consensus 97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD 173 (245)
T d1r5ba3 97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMD 173 (245)
T ss_dssp EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTT
T ss_pred cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCC
Confidence 556778999999999999999999999999999999999875200 0122222222111 1245889999999
Q ss_pred CCCCCC-H---HHHHhHhCcCc------ccCcceeEEEeeecCCCCHHHHHH
Q 030008 133 KPGALS-K---QALTDEMGLKS------ITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 133 ~~~~~~-~---~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+..... . +++...+.... ......+++++||++|+||.++++
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 864322 1 22222222111 112246899999999999987643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=7.9e-17 Score=121.68 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=92.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC------C-CccceeEEEEEeCcEEEEEEecCCchhhHHh-----HHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM------I-PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM-----WERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~------~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----~~~~ 84 (184)
+..++|+++|.+|+|||||+|+|.+....... . +|....... ......+.+|||||....... ....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 45799999999999999999999974432111 1 222222221 123345889999995433211 2223
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC---------CCHHHHHhHhCc------C
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---------LSKQALTDEMGL------K 149 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---------~~~~~~~~~~~~------~ 149 (184)
+..+|+++++.|..-.+... ..+..+.. .++|+++|.||+|.... ...+...+.+.. .
T Consensus 133 ~~~~d~~l~~~~~~~~~~d~---~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 133 FYEYDFFIIISATRFKKNDI---DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp GGGCSEEEEEESSCCCHHHH---HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCCCCCHHHH---HHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 56778888888755332222 22222222 36899999999996311 111111111110 0
Q ss_pred cccCcceeEEEeeecC--CCCHHHHHHHHHHhhhc
Q 030008 150 SITDREVCCFMISCKN--STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~l~~ 182 (184)
.......+++.+|+.+ ..|+.++.+.+.+.+++
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 0112233678888765 45899999999888765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.66 E-value=4e-15 Score=106.07 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=83.6
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh------
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR------ 76 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~------ 76 (184)
.++..++.. ....++|+++|.+|+|||||+|+++++... .....|...........+..+.++||||...
T Consensus 20 e~~~~l~~~-~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~ 98 (257)
T d1h65a_ 20 ELLGNLKQE-DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND 98 (257)
T ss_dssp HHHHHHHHT-TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH
T ss_pred HHHHHHhhc-CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH
Confidence 445555433 257799999999999999999999976642 2345566666777778889999999999421
Q ss_pred -hHHhHHHHh--ccCCEEEEEEeCCCcC-c--HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 -FRSMWERYC--RAVSAIVYVVDAADPD-N--LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 -~~~~~~~~~--~~~~~ii~v~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.......+. ...+++++|+++.... + .......+...+.. ..-.++++|+||+|...
T Consensus 99 ~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~--~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 99 MALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSP 161 (257)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCC
T ss_pred HHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch--hhhhCEEEEEECcccCC
Confidence 122222222 4458899998886542 1 12223333444321 12358999999999865
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.3e-15 Score=111.95 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=78.6
Q ss_pred cee-EEEEEcCCCCChHHHHHHHHc--CCC----------------CCCCCCccceeEEEEE----------------eC
Q 030008 18 QEM-ELSLIGLQNAGKTSLVNVVAT--GGY----------------SEDMIPTVGFNMRKVT----------------KG 62 (184)
Q Consensus 18 ~~~-~v~i~G~~~sGKStli~~l~~--~~~----------------~~~~~~t~~~~~~~~~----------------~~ 62 (184)
+.+ +|+++|+.++|||||+.+++. +.. .....-|+......+. .+
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 556 599999999999999999972 100 0011123332233321 24
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.+.++++||||+..+.......++-+|++++|+|+.++-...... .+..... .++|.++++||+|..
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECcccc
Confidence 567999999999999999999999999999999999875433322 2333333 369999999999963
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=3.8e-15 Score=109.21 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=88.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc------CCCC---CCCCCc-------------------cceeEEEE---------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT------GGYS---EDMIPT-------------------VGFNMRKV--------- 59 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~------~~~~---~~~~~t-------------------~~~~~~~~--------- 59 (184)
.+.++|+|.|+||+|||||++++.. .... ..+.++ .....+..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4679999999999999999999872 1110 001100 00111111
Q ss_pred -----------EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 030008 60 -----------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128 (184)
Q Consensus 60 -----------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 128 (184)
...++++.+++|.|...... .....+|.+++|.++..++........+.++ +-++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEE
Confidence 11234677777777444332 2445689999999887776544444433333 348899
Q ss_pred eCCCCCCCCCHH----HHHhHhCc--CcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 129 NKIDKPGALSKQ----ALTDEMGL--KSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 129 nK~D~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
||+|........ ++...... ........+++.|||.+|+|++++++.|.+..
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 999986532222 12211111 12233445799999999999999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.60 E-value=7.9e-17 Score=113.91 Aligned_cols=116 Identities=16% Similarity=0.005 Sum_probs=67.9
Q ss_pred EEEEEEecCCchhhHHhHHH---Hh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWER---YC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~---~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
..+.+.|+||+......... .. ...+.+++++|+.........................|.++|+||+|+.....
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 46999999998766432222 22 23568999999875433332221111100000113589999999999986433
Q ss_pred HHHHHhHhCc----------C---------------cccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 139 KQALTDEMGL----------K---------------SITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 139 ~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.......... . .......+++++||++|+|++++++.|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2221111000 0 001234579999999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.54 E-value=3.9e-14 Score=103.64 Aligned_cols=153 Identities=12% Similarity=0.152 Sum_probs=91.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC----CCC-----CCCCCc-------------------cceeEEE----------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG----GYS-----EDMIPT-------------------VGFNMRK---------- 58 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~----~~~-----~~~~~t-------------------~~~~~~~---------- 58 (184)
.+.++|+|.|+||+|||||++++... +.. ..+.++ .....+.
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 46789999999999999999998821 100 000000 0011111
Q ss_pred ----------EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 030008 59 ----------VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128 (184)
Q Consensus 59 ----------~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 128 (184)
+...++++.++.|.|........ ..-+|..++|..+..++..+.....+. ..+-++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~gil---------E~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCTTHH---------HHCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhhhHh---------hhhheeeE
Confidence 11245678999999865544333 334899999999988753332211111 23559999
Q ss_pred eCCCCCCCCCHH-----HHHhHhCcC--cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 129 NKIDKPGALSKQ-----ALTDEMGLK--SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 129 nK~D~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
||+|..+..... ++...+... .......+++.+||++|.|++++++.|.+...
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 999986543321 112222221 12234457999999999999999999987643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.50 E-value=1.2e-13 Score=100.19 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=66.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCccceeEEEEEeC-----------------cEEEEEEecCCc--
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG---YSEDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQ-- 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~---~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~-- 74 (184)
...++|+++|.||||||||+|++++.. ....+++|+.++...+... ...+.++|.||-
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 467899999999999999999999753 4567888988777665433 257899999982
Q ss_pred -----hhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 75 -----PRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 75 -----~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
......+-..++++|++++|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2335667788899999999999865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=2e-12 Score=94.72 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE------------------------eCcEEEEEEecCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~------------------------~~~~~~~~~D~~G 73 (184)
++|+++|.||||||||+|++++.... ..+++|+.++..... .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 47999999999999999999976543 356667665443221 1225799999999
Q ss_pred chhh-------HHhHHHHhccCCEEEEEEeCCC
Q 030008 74 QPRF-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.-.. ....-..++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 4322 1222234578999999999964
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.29 E-value=2.8e-12 Score=92.11 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-----------------cEEEEEEecCCchh---
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPR--- 76 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~~--- 76 (184)
.++|+++|.||||||||+|++++.+. ...+++|+.++...+... ...+.++|.||--.
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 47999999999999999999997664 445778888766665432 23588999999322
Q ss_pred ----hHHhHHHHhccCCEEEEEEeCC
Q 030008 77 ----FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.....-+.++++|++++|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 2345677889999999999885
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=9.5e-11 Score=84.79 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCccc-eeEEEEE------------------------------------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY-SEDMIPTVG-FNMRKVT------------------------------------ 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~~t~~-~~~~~~~------------------------------------ 60 (184)
-.+|+|+|..++|||||+|++++..+ +....++.. +....+.
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence 35799999999999999999998775 444444332 1111100
Q ss_pred ---------------e-CcEEEEEEecCCchh-------------hHHhHHHHhccCCE-EEEEEeCCCcCcHHHHHHHH
Q 030008 61 ---------------K-GNVTIKLWDLGGQPR-------------FRSMWERYCRAVSA-IVYVVDAADPDNLSISRSEL 110 (184)
Q Consensus 61 ---------------~-~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~-ii~v~d~~~~~~~~~~~~~~ 110 (184)
. ....+.++|+||... ...+...++..++. +++|.++...-+-.....+.
T Consensus 106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~ 185 (299)
T d2akab1 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence 0 113488999999321 12445566777765 55666666543333333444
Q ss_pred HHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 111 HDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 111 ~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
..+- ....++++|+||+|..+..
T Consensus 186 ~~~~----~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 186 KEVD----PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHC----TTCSSEEEEEECGGGSCTT
T ss_pred HHhC----cCCCceeeEEeccccccch
Confidence 4332 2357899999999997653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.23 E-value=6e-11 Score=86.14 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=42.8
Q ss_pred EEEEEEecCCchh-------------hHHhHHHHhccCCEEEEEE-eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 64 VTIKLWDLGGQPR-------------FRSMWERYCRAVSAIVYVV-DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
..+.++|+||... ....+..++.+++.+++++ ++.....-.........+-. ...++++|+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vit 206 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVIT 206 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEe
Confidence 3588999999432 1345667888888765554 54433222223333333321 3468999999
Q ss_pred CCCCCCCC
Q 030008 130 KIDKPGAL 137 (184)
Q Consensus 130 K~D~~~~~ 137 (184)
|+|.....
T Consensus 207 k~D~~~~~ 214 (306)
T d1jwyb_ 207 KLDLMDKG 214 (306)
T ss_dssp CTTSSCSS
T ss_pred ccccccch
Confidence 99987543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.82 E-value=4.2e-09 Score=75.03 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
+..++|+++|.||+|||||+|++.+.+.. ..+..|........ +.++.++||||.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~---~~~~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC---CCCeEEecCCCc
Confidence 46799999999999999999999976542 22333443332222 235999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=1.2e-08 Score=72.58 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
...+...++.+|++++|+|+.+|.+..+ ..+..++. ++|.|+|+||+|+.+....+++.+.+... ...
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~ 73 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIR 73 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCC
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHHhc-----CCc
Confidence 3456677899999999999998854333 33444543 58999999999998765556666555332 335
Q ss_pred EEEeeecCCCCHHHHHHHHHHhhh
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+++|+.++.|..++.+.+.+.+.
T Consensus 74 ~i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 74 SLSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cceeecccCCCccccchhhhhhhh
Confidence 889999999999888877766554
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=2.7e-08 Score=68.29 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC----------CCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
-..+++|++|+|||||+|++..+.... ..-+|.......+..+ -.++||||...+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 467999999999999999998532211 1112322222333222 479999996544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=4e-08 Score=67.02 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+..-|+++|++|+||||.+-++.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455678899999999999977665
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.1e-07 Score=64.71 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=50.0
Q ss_pred cEEEEEEecCCchhhHH----hHH---HHhc-----cCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 63 NVTIKLWDLGGQPRFRS----MWE---RYCR-----AVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~----~~~---~~~~-----~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
+.++.++||+|...... .+. ...+ ..+-.++|+|+.... ........+..+ -+-=+++|
T Consensus 91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lIlT 162 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTGITLT 162 (211)
T ss_dssp TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCEEEEE
T ss_pred CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCceEEEe
Confidence 45789999999543322 122 2222 246789999997653 222222222221 23356789
Q ss_pred CCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 130 KIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|.|.....- .-.+.... +.|+..++ .|++|+++
T Consensus 163 KlDe~~~~G~~l~~~~~~--------~~Pi~~i~--~Gq~v~Dl 196 (211)
T d2qy9a2 163 KLDGTAKGGVIFSVADQF--------GIPIRYIG--VGERIEDL 196 (211)
T ss_dssp CCTTCTTTTHHHHHHHHH--------CCCEEEEE--CSSSGGGE
T ss_pred ecCCCCCccHHHHHHHHH--------CCCEEEEe--CCCCcccC
Confidence 999864322 22223332 23566666 78777654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=2.3e-07 Score=63.57 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=58.4
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+.|.+++|+++.+|+ +...+..++..... .+++.++|+||+|+.+..+.+.+....... ....+++.+|+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEecc
Confidence 46789999999998765 44445555544433 478999999999998643333333222111 11246899999
Q ss_pred cCCCCHHHHHHHHH
Q 030008 164 KNSTNIDSVIDWLV 177 (184)
Q Consensus 164 ~~~~~v~~l~~~i~ 177 (184)
+++.|++++.+.+.
T Consensus 81 ~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 81 KTGMGIEELKEYLK 94 (225)
T ss_dssp TTCTTHHHHHHHHS
T ss_pred ccchhHhhHHHHhc
Confidence 99999999887763
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=7.2e-07 Score=61.27 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++.|.-|||||||+++++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 4679999999999999999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=5.4e-07 Score=61.08 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=49.6
Q ss_pred cEEEEEEecCCchhhHH----hHHHH---h-----ccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 63 NVTIKLWDLGGQPRFRS----MWERY---C-----RAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~----~~~~~---~-----~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
+.++.++||+|...... .+..+ . ...+-+++|+|++... ........+..+ . +-=+++|
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G-------LTGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C-------CSEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-C-------CceEEEe
Confidence 45799999999543321 11111 1 2357789999998664 223333333322 1 2256799
Q ss_pred CCCCCCC-CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 130 KIDKPGA-LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 130 K~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|.|.... ...-.+....+. |+..++ +|++.+++
T Consensus 160 KlDet~~~G~~l~~~~~~~~--------Pi~~i~--~Gq~p~Dl 193 (207)
T d1okkd2 160 KLDGTAKGGVLIPIVRTLKV--------PIKFVG--VGEGPDDL 193 (207)
T ss_dssp CTTSSCCCTTHHHHHHHHCC--------CEEEEE--CSSSTTCE
T ss_pred ccCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChHhC
Confidence 9998543 223333333333 465665 46655544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.26 E-value=7.8e-08 Score=66.15 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-..+++|++|+|||||+|+|...
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 35679999999999999999853
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=2.2e-07 Score=63.11 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=38.3
Q ss_pred CcEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+.++.++||+|..... ..+..+ ..+.+-+++|.|+..++.-......+...+. . -=+++||.|...
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~-~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------V-TGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------C-CEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------C-CeeEEeecCccc
Confidence 34579999999944332 112222 2456889999999876432222222222221 1 237789999753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.23 E-value=5.6e-07 Score=61.15 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCchhhH------HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR------SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~------~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
.+.++.++||+|...+. ...... .-+.+-+++|+|+................. +. --+++||.|.
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKlDe 165 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------KI-GTIIITKMDG 165 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------TT-EEEEEECTTS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------Cc-ceEEEecccC
Confidence 44689999999953221 111221 223577899999976532222111111111 22 2366999998
Q ss_pred CCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.... -.+.... ...+.|+..++ +|++|+++
T Consensus 166 t~~~--G~~l~~~-----~~~~lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 166 TAKG--GGALSAV-----AATGATIKFIG--TGEKIDEL 195 (211)
T ss_dssp CSCH--HHHHHHH-----HTTTCCEEEEE--CSSSTTCE
T ss_pred CCcc--cHHHHHH-----HHHCcCEEEEe--CCCCcccC
Confidence 6331 1111111 12334666666 68777654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.11 E-value=2.1e-07 Score=63.91 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=58.3
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+.|.+++|+++.+|+ +...+..++..... .+++.++|+||+|+.+..+.++....+.. .....+.+++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeeec
Confidence 46789999999998764 45555555554433 47899999999999865333322222211 11223457999999
Q ss_pred cCCCCHHHHHHHH
Q 030008 164 KNSTNIDSVIDWL 176 (184)
Q Consensus 164 ~~~~~v~~l~~~i 176 (184)
.++.|++++.+.+
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999999887654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.05 E-value=1.2e-06 Score=57.64 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
+||+++|++|||||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999884
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=7.1e-05 Score=52.72 Aligned_cols=93 Identities=23% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC--C---CCCCccceeEEEE---EeCcEEEEEEecCCchh
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS--E---DMIPTVGFNMRKV---TKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~--~---~~~~t~~~~~~~~---~~~~~~~~~~D~~G~~~ 76 (184)
++.++.|++. ..+-.-|.++|+.++|||+|+|++++.... . ....|.|+-.... ......+.++||.|...
T Consensus 19 ~e~l~~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 19 PEALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp HHHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HHHHHHHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 4456667655 234457779999999999999999975532 1 1245666433322 23456799999999422
Q ss_pred -------hHH-hHHHHhccCCEEEEEEeCC
Q 030008 77 -------FRS-MWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 -------~~~-~~~~~~~~~~~ii~v~d~~ 98 (184)
+.. .....+--++++||-....
T Consensus 98 ~~~~~~~~~~~i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 98 VEKGDNQNDSWIFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp GGGCCCTTHHHHHHHHHHHCSEEEEEEESC
T ss_pred cccccchhHHHHHHHHHHHhCEEEEecccc
Confidence 111 1222223467766665554
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.87 E-value=4e-06 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.++|++.|++||||||+.+.|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 5778999999999999999999973
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.83 E-value=3.8e-06 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-+|+|.|++|||||||+++|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5e-06 Score=54.00 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++|+|.+|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999973
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.80 E-value=5.1e-06 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
..+|+++|+|||||||+.+.|.
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.78 E-value=0.00012 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|++.|+||||||++++++.+
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 446799999999999999999974
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.77 E-value=7.5e-06 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.++|+++|+|||||||....|.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999999887
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.71 E-value=0.00014 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
+.|+|.+|||||||++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3699999999999999887
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.71 E-value=9.5e-06 Score=51.74 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|+|||||||+.+++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=1.2e-05 Score=52.85 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|+|||||||+...|.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.65 E-value=3.2e-05 Score=51.23 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++...+.+.-....+-|+|.|++|||||||.++|.
T Consensus 9 ~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34444444334556779999999999999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.64 E-value=1.3e-05 Score=53.29 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++|++.|+|||||||+...|.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.63 E-value=0.00022 Score=45.63 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
++.+.+.+...++..-|++-|+-|||||||++.+...-... -.+||-.. ...+......+.-+|.--
T Consensus 20 ~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLYR 88 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECTT
T ss_pred HHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEec
Confidence 34444433444667789999999999999999988543222 23344332 233444556666677754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.62 E-value=1.6e-05 Score=52.42 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|+|||||||+...|.
T Consensus 1 M~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=1.9e-05 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|+|||||||+...|.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999887
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.58 E-value=2.1e-05 Score=52.39 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.++|+++|+|||||||+...|..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999983
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=2e-05 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|+|||||||....|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999886
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.58 E-value=1.8e-05 Score=51.23 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|++||||||+.++|..
T Consensus 5 I~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=4.6e-05 Score=54.91 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
....+|+|.|++|||||||+++++..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HhCCCEEEEeeccccchHHHHHHhhh
Confidence 45567999999999999999999843
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=2.3e-05 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++|+++|+|||||||+...|.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999987
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.55 E-value=2.7e-05 Score=51.79 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|+|||||||+..+|.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999887
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=2.1e-05 Score=51.48 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
+|++.|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48999999999999999887
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00072 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-+++++|+||+|||+++..+..
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999998774
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=4.9e-05 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-+++++|+||+|||+++..+..
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHH
Confidence 456899999999999999988774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.50 E-value=6.3e-05 Score=51.36 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.+..|+++. +...+++.|++|+||||+++.+..
T Consensus 33 ~~~l~~~i~~~---~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 33 VKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp HHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHH
Confidence 35566666544 334689999999999999998874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.50 E-value=3.4e-05 Score=50.24 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.+.|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 466889999999999999998776
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=2.6e-05 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|+++|.|||||||+.++|.
T Consensus 4 li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999987
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.44 E-value=5.2e-05 Score=52.00 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcc--cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..|++.... +....+++.|+||+||||+.+.+..
T Consensus 19 ~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 19 KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence 455556543322 2335799999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=3.1e-05 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=4e-05 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++..-|+++|.|||||||+..++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455678899999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.38 E-value=0.00011 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.+++.|+||+||||+++.+.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=5.8e-05 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
+.|+++|+|||||||....+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.36 E-value=8e-05 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+++
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhc
Confidence 3444678999999999999999983
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=7.4e-05 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=+|+++|+.|||||||++.+.+
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566899999999999999999983
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=0.00011 Score=49.93 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.+..|+++. +..++++.|++|+||||+++.+.+
T Consensus 24 ~~~L~~~~~~~---~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 24 IDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp HHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCCeEEEECCCCCCchhhHHHHHH
Confidence 34555666543 233689999999999999988763
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.34 E-value=5.2e-05 Score=49.62 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|++.|.+||||||+++.+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.33 E-value=9.3e-05 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=.++++|+.|||||||++.+.
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~ 62 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLIT 62 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHh
Confidence 455579999999999999999997
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=4.8e-05 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998876
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.30 E-value=0.00015 Score=50.21 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcc---cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.+++.+... ...-.+++.|++|+||||+++.+..
T Consensus 26 ~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 26 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 456666665432 2335799999999999999998874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.30 E-value=0.00012 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+++.|+||+||||+++.+.+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=6.6e-05 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..=++++|++||||||+.++|..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999873
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.28 E-value=0.00011 Score=50.59 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556889999999999999999883
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.00011 Score=49.84 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..|+++. ...++++.|++|+||||++..+.+
T Consensus 24 ~~L~~~i~~~---~~~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 24 TTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp HHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCCeEEEECCCCCChhHHHHHHHH
Confidence 4455555433 223589999999999999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=9.9e-05 Score=50.36 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.+..|+++.. ...+++.|++|+||||+++.+.+
T Consensus 21 ~~~l~~~i~~~~---~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 21 VTVLKKTLKSAN---LPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp HHHHHHHTTCTT---CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCeEEEECCCCCChHHHHHHHHH
Confidence 355666665432 23589999999999999998874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.27 E-value=7.9e-05 Score=48.30 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|++||||||+.+.+..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999998874
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.26 E-value=7.7e-05 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.25 E-value=7e-05 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
+|+++|++||||||+...+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999886
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=8e-05 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=-++++|+.|||||||++.+.+
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhc
Confidence 3444679999999999999998873
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00047 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
..-+++++|+||+|||+++..|.
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHH
Confidence 45567999999999999986554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=8.6e-05 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++||||||+++.+...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999743
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.23 E-value=6.6e-05 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
--|++.|+||||||||.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=8.7e-05 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.--|+++|+|||||||+...|..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999873
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.22 E-value=8.9e-05 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|.+||||||+.+.|..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56779999999999999884
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=0.00015 Score=49.75 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=-++++|+.|||||||++.+.+
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3444679999999999999999884
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00014 Score=50.44 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=.++++|+.|||||||++.+.
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~ 61 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQ 61 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 455688999999999999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=4.5e-05 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|.++|.+||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 55788999999999999999886
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.20 E-value=8.8e-05 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=20.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=-++++|+.|||||||++.+.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~ 52 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcchhhHhcc
Confidence 344467999999999999999876
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.18 E-value=0.0001 Score=50.56 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++++|+.|||||||++.+.+
T Consensus 26 ~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 357899999999999999983
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00014 Score=48.85 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+-|+|.|++||||||+.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999886
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.14 E-value=0.0002 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~g 51 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAG 51 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhc
Confidence 3445689999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00012 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|+.|||||||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999843
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=0.00011 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.--|+++|+|||||||+..+|..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445588999999999999999873
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.00013 Score=48.37 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|+++|++||||||++++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.00013 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4455789999999999999999984
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.11 E-value=0.00012 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~G 54 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 344579999999999999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.10 E-value=0.00012 Score=47.54 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
.|+++|.+||||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37789999999999999886
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=0.0002 Score=49.21 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHHhhccc--ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~--~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.+.++.+... ....+++.|++|+||||+++.+.+
T Consensus 18 ~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 18 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344555544432 234699999999999999998875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=9.8e-05 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=-++++|+.|||||||++.+.+
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3445689999999999999999985
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.07 E-value=0.00025 Score=47.11 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.|..|+++. ++.-.+++.|++++|||+|+.+++
T Consensus 40 l~~l~~~l~~~--PKkn~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 40 LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCceEEEEECCCCccHHHHHHHHH
Confidence 45566666554 566788999999999999999877
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00014 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=-++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3445679999999999999999873
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00016 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
=|+++||+|||||||++++...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.03 E-value=0.0001 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~G 48 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAG 48 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 334579999999999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.03 E-value=0.00016 Score=47.30 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.1
Q ss_pred EE-EEEcCCCCChHHHHHHHH
Q 030008 21 EL-SLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v-~i~G~~~sGKStli~~l~ 40 (184)
|| ++.|.+||||||+++.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 45 467999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.02 E-value=0.00021 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.562 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.+.|+|-|+|||||||....|.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999999887
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.02 E-value=0.00043 Score=48.57 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.++|.........-|+|.|.+|+|||||...+.+
T Consensus 30 ~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 30 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4566666543334455778999999999999998874
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00024 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=-++++|+.|||||||++.+.+-
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445789999999999999999843
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.98 E-value=0.00016 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.656 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=.++++|+.|||||||++.+.
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~ 65 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIP 65 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHH
Confidence 455689999999999999999877
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.96 E-value=0.00034 Score=46.08 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
..+-|++.|.+||||||+.+.|...++
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~g~ 28 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSWGY 28 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 467789999999999999998864433
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.96 E-value=0.0002 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.=-++++|+.|||||||++.+.+
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~G 52 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITG 52 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHC
Confidence 33579999999999999999984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.96 E-value=0.0002 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3445689999999999999999973
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.95 E-value=0.0036 Score=42.17 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=45.3
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSKQ 140 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~~ 140 (184)
+.+++.++|+|+.... .....+..+|.++++..... .+.....+....+.. .+.|++ +|.||.|..+.....
T Consensus 110 ~~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~ 182 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPP 182 (237)
T ss_dssp GGCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCH
T ss_pred hcCCEEEEcccccccc--cchhhhhhhhcccccccccc-eecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhh
Confidence 3468999999986543 34445667999999998753 334444444433322 356665 789999876544333
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.90 E-value=0.00026 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.|+||+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00053 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+..+-|+|.|++||||||+.+.+.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3557899999999999999988775
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00056 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|+||+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34589999999999999999983
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.84 E-value=0.00043 Score=47.89 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.8
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..++.+.+. ..-.|++.|++|+|||||++++..
T Consensus 19 ~el~~l~~~---~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 19 KEIEKLKGL---RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp HHHHHHHHT---CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 334445433 334678999999999999998873
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.84 E-value=0.00013 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~~i~g 53 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3445789999999999999999984
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.83 E-value=0.00055 Score=47.24 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.|++.|+||+|||++++++.+
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34699999999999999999984
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.83 E-value=0.00043 Score=46.48 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++..-|.+.|.|||||||+.+.|.
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3577889999999999999999886
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.83 E-value=0.00025 Score=46.92 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.+-|+|-|..||||||+++.|..
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999998873
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.0006 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+..-.|++.|++|+|||+|++++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHH
Confidence 34556799999999999999999983
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.73 E-value=0.00087 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.-.+++.||||+|||++..++.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHH
Confidence 455578999999999999999887
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.73 E-value=0.00075 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|+||+|||++++++..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHH
Confidence 345699999999999999999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.0013 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..+=|+|.|.+|||||||...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 456889999999999999987664
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.69 E-value=0.00045 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.++++||||||||.|.+++..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 45689999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00061 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|+|.|+|||||||....+.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999887
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0011 Score=45.36 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
.+++.|++|+||||+++.+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999876
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.54 E-value=0.0012 Score=48.68 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
|+...-...++.....+.=-|++.|+.||||||.+..++.
T Consensus 141 G~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 141 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhh
Confidence 4444445555555555555689999999999999999885
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0018 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
--+++.|++|+||||+++.+..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999997763
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.48 E-value=0.00079 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|+|-|..||||||++..|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999876
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0017 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
+-|+|+|..||||||+.+.|...++
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G~ 28 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLGI 28 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEECCCcCCHHHHHHHHHHCCC
Confidence 4588999999999999998875444
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0013 Score=43.71 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+.--+.+.|+||+|||+|..++...
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45556789999999999999988743
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0013 Score=43.91 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|++-|..||||||+++.|.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999876
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.22 E-value=0.0021 Score=42.74 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+-|++.|..||||||+.+.|...
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 56899999999999999988643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.13 E-value=0.0018 Score=48.42 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
+|+++||+|||||-|.+++.
T Consensus 51 NILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.005 Score=41.50 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--+.+.|+||||||+|..++...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45556789999999999999998744
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.10 E-value=0.0021 Score=41.79 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
..-|++.|++|+||||+.-.+...+.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 45689999999999999999886654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.08 E-value=0.0017 Score=44.23 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
+..--+.|.|+||+|||+|..++....
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455667899999999999999887443
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.07 E-value=0.0023 Score=41.60 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
...-|++.|++|+||||+...+...+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 345689999999999999999986544
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.05 E-value=0.00099 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=17.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++.=|+|.|.+||||||+.++|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 345569999999999999999876
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.05 E-value=0.00084 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-+|++.|+||+|||+|++++.
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHH
T ss_pred CCeEEEECCCCccHHHHHHHHH
Confidence 3579999999999999999886
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0025 Score=42.63 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
.=|++-|..||||||++..|.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347788999999999888765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.00037 Score=45.91 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=16.4
Q ss_pred EEEcCCCCChHHHHHHHH
Q 030008 23 SLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 23 ~i~G~~~sGKStli~~l~ 40 (184)
+|+|+.||||||++.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 678999999999999875
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.84 E-value=0.0056 Score=42.48 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+++-.+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 5677889999999999999998873
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.83 E-value=0.0033 Score=40.55 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
...-|++.|++|+||||+.-.+...+.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 345789999999999999999886654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0019 Score=45.53 Aligned_cols=22 Identities=14% Similarity=0.598 Sum_probs=18.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +++|+.||||||++.++.
T Consensus 24 ~~ln-vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 24 DRVT-AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp SSEE-EEECCTTTCSTHHHHHHH
T ss_pred CCeE-EEECCCCCcHHHHHHHHH
Confidence 3444 789999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.77 E-value=0.0028 Score=42.95 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--+++.|+||+|||+|..++...
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667789999999999999988743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0014 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+|-|+.||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998863
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0031 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-|+|-|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.68 E-value=0.0033 Score=42.17 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.|++|+|||.|++++++
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999984
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.64 E-value=0.0034 Score=42.44 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...--+.|.|++|+|||+|..++..
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4455678999999999999999874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.52 E-value=0.0037 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.++|.|=|+-||||||+++.+..
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0065 Score=43.20 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
-.++++|++|+|||.|..++.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHH
Confidence 368899999999999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0043 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.--+.|.|+||+|||+|..++..
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999874
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.39 E-value=0.0054 Score=43.94 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-++|.|=|.-||||||+++.|..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 457999999999999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.38 E-value=0.0047 Score=44.18 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-++|.|-|+-||||||+++.+.
T Consensus 2 p~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 2 PTLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHT
T ss_pred CCceEEEEECCcCCCHHHHHHHHH
Confidence 345789999999999999999886
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.31 E-value=0.0051 Score=43.79 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
+++.|+||+|||.+.+++..
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 45579999999999999874
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.0044 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=18.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +++|+.||||||++.++.
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHHH
Confidence 4565 588999999999999974
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.30 E-value=0.0053 Score=41.13 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--+.+.|++|+|||+|..++.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 566677899999999999987765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.012 Score=40.70 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=19.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..--+.+.|++++|||+|.-++.
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHH
T ss_pred ccceeEEEecCCCcHHHHHHHHHH
Confidence 344456799999999999987766
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0059 Score=40.84 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
=|++-|..||||||+++.|.
T Consensus 5 ~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48899999999999999886
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.0083 Score=36.17 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.+.|.+.|..||||||+.++|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 578999999999999999999885
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.00 E-value=0.0071 Score=41.83 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.=-+++.|+||+|||+|+..+.
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344346799999999999988765
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.71 E-value=0.009 Score=40.40 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|++.|..||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.70 E-value=0.009 Score=41.42 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
=+.+.|+++||||+|..+++
T Consensus 59 itei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHH
Confidence 45799999999999998877
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.61 E-value=0.0063 Score=42.54 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.4
Q ss_pred EEEEEcCCCCChHHHH
Q 030008 21 ELSLIGLQNAGKTSLV 36 (184)
Q Consensus 21 ~v~i~G~~~sGKStli 36 (184)
.++|.|.|||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3688999999999764
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.60 E-value=0.021 Score=39.02 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..+.+.++... .....|++.|++|+||+.+.+.+-
T Consensus 9 ~~~~~~~~~~~a-~~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 9 MKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp HHHHHHHHHHHT-TCCSCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHH
Confidence 456666766554 344568999999999999998875
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.011 Score=40.73 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-.++.|++|+|||+|+-++.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 45699999999999988765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.01 Score=43.71 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
-+++|+|.+|||||+++..+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999987766
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.41 E-value=0.0088 Score=42.13 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.8
Q ss_pred EEEEEcCCCCChHHHH
Q 030008 21 ELSLIGLQNAGKTSLV 36 (184)
Q Consensus 21 ~v~i~G~~~sGKStli 36 (184)
.++|.|.+||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4789999999999764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.01 E-value=0.014 Score=42.33 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-+++++||.|||||-|.++|.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHH
Confidence 44579999999999999999986
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.018 Score=41.59 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNV 38 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~ 38 (184)
-.+|.|+||+||||++.+
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 467899999999998754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.023 Score=39.68 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+.-|++++|++|+|||+|+..+.+
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 45778999999999999999988874
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.036 Score=39.24 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
.++++|++|+|||.+.+.+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHH
Confidence 67888999999999999876
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.033 Score=38.34 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
..--+.+.|++++|||||.-+++
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHH
Confidence 33456799999999999988776
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.06 Score=36.90 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=17.7
Q ss_pred ccceeEEEEE-cCCCCChHHHHHHH
Q 030008 16 FKQEMELSLI-GLQNAGKTSLVNVV 39 (184)
Q Consensus 16 ~~~~~~v~i~-G~~~sGKStli~~l 39 (184)
.++..+|+++ |-.|+||||+.-.|
T Consensus 16 ~~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 16 ARNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp HTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHH
Confidence 3566676655 99999999985544
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.042 Score=37.12 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
+++.|+..+||||+++++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 5799999999999999865
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.96 E-value=0.048 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
+++.|+..+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999765
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.90 E-value=0.077 Score=34.73 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+....+++.|++|+|||++...+.+
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999988774
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.09 E-value=0.079 Score=36.61 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.-+.-|++++|.+|+|||+|+..+..+
T Consensus 65 igkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 65 YAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 346678999999999999998888643
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=91.06 E-value=0.073 Score=36.32 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=37.9
Q ss_pred cEEEEEEecCCchhhH-HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 135 (184)
.+++.++|+|+..... .........+|.++++.+.. ..++.........+.......+.+ .-+|.|+.+...
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence 4679999999744322 22223334578888887664 333443333222221111112333 347789988764
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.79 E-value=0.037 Score=33.41 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=17.5
Q ss_pred cccceeEEEEEcCCCCChHHHH
Q 030008 15 FFKQEMELSLIGLQNAGKTSLV 36 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli 36 (184)
++++.-++++.+++|+|||..+
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTH
T ss_pred HHHcCCcEEEEcCCCCChhHHH
Confidence 4567778889999999999443
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=89.52 E-value=0.082 Score=34.11 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=22.0
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCc
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPT 51 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t 51 (184)
++|+|...||||.+..++.....+..+..|
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT 31 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEc
Confidence 589999999999999998754333333333
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.25 E-value=0.099 Score=31.61 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.1
Q ss_pred ceeEE-EEEcCCCCChHHHHHHHH
Q 030008 18 QEMEL-SLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v-~i~G~~~sGKStli~~l~ 40 (184)
+++++ ++.++.|||||+++-.+.
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHH
Confidence 34444 678999999999886655
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=87.47 E-value=0.82 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.6
Q ss_pred cceeEEEEEcC-CCCChHHHHHHHHcCCC
Q 030008 17 KQEMELSLIGL-QNAGKTSLVNVVATGGY 44 (184)
Q Consensus 17 ~~~~~v~i~G~-~~sGKStli~~l~~~~~ 44 (184)
++.+||+++|. .++|-+ +...+..++.
T Consensus 2 ~~p~KV~IiGA~G~VG~~-~a~~l~~~~l 29 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYS-LLFRIAAGEM 29 (154)
T ss_dssp CCCEEEEESSTTSHHHHH-HHHHHHTTTT
T ss_pred CCCCEEEEECCCCHHHHH-HHHHHHhccc
Confidence 46789999996 789954 5555554443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=87.18 E-value=0.19 Score=30.77 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.2
Q ss_pred EEEcCCCCChHH-HHHHHH
Q 030008 23 SLIGLQNAGKTS-LVNVVA 40 (184)
Q Consensus 23 ~i~G~~~sGKSt-li~~l~ 40 (184)
+++|+=.||||| |++++-
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 578999999999 555543
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.94 E-value=0.16 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+.-|++++|.+|+|||+|+..+..
T Consensus 65 ig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 65 IGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp CBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEeecCCCCChHHHHHHHHH
Confidence 35667899999999999999877663
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.88 E-value=0.2 Score=34.32 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|++.|-.|+||||+.-.+.
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHHH
Confidence 45689999999999755443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.83 E-value=1.1 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEEEcC-CCCChHHHHHHHHcCCC
Q 030008 21 ELSLIGL-QNAGKTSLVNVVATGGY 44 (184)
Q Consensus 21 ~v~i~G~-~~sGKStli~~l~~~~~ 44 (184)
||+++|. ..+| +++...+..++.
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~~ 25 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSPL 25 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred eEEEECCCChHH-HHHHHHHHhCCc
Confidence 7999995 8999 666777775554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.63 E-value=0.14 Score=35.83 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=12.6
Q ss_pred EEEcCCCCChHHHH
Q 030008 23 SLIGLQNAGKTSLV 36 (184)
Q Consensus 23 ~i~G~~~sGKStli 36 (184)
++.|..|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 69999999999964
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.27 Score=31.85 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=16.1
Q ss_pred EEEEEcCC-CCChHHHHHHHH
Q 030008 21 ELSLIGLQ-NAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~-~sGKStli~~l~ 40 (184)
++.|.|-. |+||||+.-.|.
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHH
Confidence 67889986 999999866554
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=86.16 E-value=0.25 Score=33.93 Aligned_cols=72 Identities=8% Similarity=0.069 Sum_probs=35.0
Q ss_pred CcEEEEEEecCCchhhHHhHHH-HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWER-YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL-LVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~-~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~ 134 (184)
+.+++.++|+|+.......... ....++.++++.... ..+..........+.........++ -+|.|+.+..
T Consensus 117 ~~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred ccCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 3477899999875432222111 223456666665443 2233333333332222111233444 3778998754
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.04 E-value=0.16 Score=35.76 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.0
Q ss_pred EEEEcCCCCChHHHH
Q 030008 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 v~i~G~~~sGKStli 36 (184)
-++.|..|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 479999999999964
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.93 E-value=0.21 Score=34.46 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.-|+.++|.+|+|||+|+..+...
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred CCceEeeccCCCCChHHHHHHHHhh
Confidence 5568899999999999998765533
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.03 E-value=0.19 Score=35.36 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.2
Q ss_pred EEEEcCCCCChHHHH
Q 030008 22 LSLIGLQNAGKTSLV 36 (184)
Q Consensus 22 v~i~G~~~sGKStli 36 (184)
-++.|..|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 369999999999975
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=82.86 E-value=0.95 Score=30.16 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.....++.|.+|||||-..-+..
T Consensus 74 ~~~~~~LL~GdvGsGKT~V~~~a~ 97 (233)
T d2eyqa3 74 PLAMDRLVCGDVGFGKTEVAMRAA 97 (233)
T ss_dssp SSCCEEEEECCCCTTTHHHHHHHH
T ss_pred cCccCeEEEcCCCCCcHHHHHHHH
Confidence 456788999999999998865544
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.84 E-value=0.36 Score=32.96 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=18.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVV 39 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l 39 (184)
.....+-++.|+.|||||-..-..
T Consensus 101 ~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 101 SEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp SSSCCCCEEECCSSSSHHHHHHHH
T ss_pred ccCcceeeeeccccccccHHHHHH
Confidence 345677799999999999875443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.75 E-value=0.41 Score=30.66 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.1
Q ss_pred EEEEEcCCCCChHHHH
Q 030008 21 ELSLIGLQNAGKTSLV 36 (184)
Q Consensus 21 ~v~i~G~~~sGKStli 36 (184)
+++++++.|+|||...
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 4678899999999743
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=81.55 E-value=1.8 Score=27.28 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=54.5
Q ss_pred cceeEEEEEcC-CCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH----------------
Q 030008 17 KQEMELSLIGL-QNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---------------- 79 (184)
Q Consensus 17 ~~~~~v~i~G~-~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------------- 79 (184)
++.+||+|+|. .+.|=|. +.++..+..-.. .....+.++|.+.......
T Consensus 22 k~~~kV~I~GA~G~Ig~~l-~~~La~g~v~g~-------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~ 87 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHL-LFKLASGEVFGQ-------------DQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE 87 (175)
T ss_dssp CCCEEEEEETTTSHHHHHH-HHHHHHTTTTCT-------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE
T ss_pred CCCcEEEEECCCcHHHHHH-HHHHHcCcccCC-------------CceEEEEEecCccccchhcchhhhhcccccccccC
Confidence 57789999996 7788554 445554433211 1234567777776433211
Q ss_pred -----hHHHHhccCCEEEEEEeCCCcC--cHHHH--------HHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 80 -----MWERYCRAVSAIVYVVDAADPD--NLSIS--------RSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 80 -----~~~~~~~~~~~ii~v~d~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
.....+.++|++++.-...... +-.++ ..+...+.++. .++.-+++|.|-+|.
T Consensus 88 ~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a-~~~~~vlvv~NPvd~ 155 (175)
T d7mdha1 88 VSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA-SKNVKVLVVGNPCNT 155 (175)
T ss_dssp EEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHH
T ss_pred ccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCcEEEEecCcHHH
Confidence 1224467888888887665332 22221 12222332221 134556777787774
|