Citrus Sinensis ID: 030035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLMPF
Secondary Structure (PSIPRED)
cEEEEEEccccHHHHHHHHHHcccEEEEEccccccccccEEEEccccHHHHHHHHHHcccHHHHHHHHHccccEEEEHHHHHHHHHHHHccccccccccccccEEEEccccccccccEEEEEccccccccccccccEEEEEEEcEEEEEcccccEEEEEEEEccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcHHHHHHHHHHHHHcccEEEEEEcHHHHHHccEEEEccccHHHHHHHHHHcccHHHHHHHHHcccccEccHHHHHHHHHHHccccccccccccEEEEEEEEcccccccccccEEcccccccccccccccccEEEEEccEEEEcccccEEEEEEEcccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MVVGVLALQGSFNEHIAALKRLgvkgveirkpdqlqnvssliipggesttMARLAEYHNLFPALREFVkmgkpvwgtcAGLIFLANKAVgqklggqelvggldctvhrnffgsQIQSFEAelsvpalasqeggpetfrgvfirapavldvgpdvdvladypvpsnkvlyssSTVEIQEVCLMPF
Flexible Loop (DISEMBL)
MVVGVLALQGSFNEHIAALKRLGVKGveirkpdqlqnvssliipgGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYpvpsnkvlyssstveiqevclmpf
Low Complexity Region (SEG)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLMPF
Disordered region (IsUnstruct)
**VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA****GPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCL***
Disordered Region (DISOPRED)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQ****MP*
Disordered Region (DISEMBL)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLMPF
Disordered Region (DISPRO)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEV****F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLMPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q8LAD0	255	Pyridoxal biosynthesis pr	yes	no	0.994	0.717	0.879	5e-91
Q5WKW1	195	Glutamine amidotransferas	yes	no	0.820	0.774	0.5	6e-36
A5D6D2	196	Glutamine amidotransferas	yes	no	0.826	0.775	0.493	1e-35
A7Z0D4	196	Glutamine amidotransferas	yes	no	0.820	0.770	0.468	3e-35
A7GJS9	196	Glutamine amidotransferas	yes	no	0.798	0.75	0.474	6e-35
C5D338	192	Glutamine amidotransferas	yes	no	0.820	0.786	0.468	1e-34
Q6AFB8	198	Glutamine amidotransferas	yes	no	0.831	0.772	0.509	1e-34
B7GFL9	192	Glutamine amidotransferas	yes	no	0.809	0.776	0.481	2e-34
Q5L3Y1	196	Glutamine amidotransferas	yes	no	0.820	0.770	0.468	2e-34
B8G664	190	Glutamine amidotransferas	yes	no	0.793	0.768	0.483	4e-34

>sp|Q8LAD0|PDX2_ARATH Pyridoxal biosynthesis protein PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1

 Score =  333 bits (853), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 161/183 (87%), Positives = 172/183 (93%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVC 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQE  
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 LMP 183
            +P
Sbjct: 181 ALP 183

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|Q5WKW1|PDXT_BACSK Glutamine amidotransferase subunit PdxT OS=Bacillus clausii (strain KSM-K16) GN=pdxT PE=3 SV=1

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 102/160 (63%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQG+ +EHI  L   G + +EI++ DQL  V  LI+PGGEST M RL + + L
Sbjct: 1   MKIGVLALQGAVSEHIRLLTNSGAEAIEIKRADQLAEVDGLILPGGESTAMRRLIDKYQL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           F  LREF + GKP+ GTCAGLI +A    G++ G    +G +D  V RN FG Q  SFEA
Sbjct: 61  FKPLREFGESGKPILGTCAGLILMAKTLSGEQDGH---LGFIDMVVERNAFGRQRDSFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
            L V  +A      E    VFIRAP V +VGPDVD+L++Y
Sbjct: 118 TLDVKGVA------EKLTAVFIRAPLVKEVGPDVDILSEY 151

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Bacillus clausii (strain KSM-K16) (taxid: 66692)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A5D6D2|PDXT_PELTS Glutamine amidotransferase subunit PdxT OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pdxT PE=3 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 108/160 (67%), Gaps = 8/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQG+F EH   L   G + V++RKP+QL+++S+L+IPGGESTT+ +L    NL
Sbjct: 1   MKVGVLALQGAFREHQKVLAACGAESVQVRKPEQLEDISALVIPGGESTTIGKLLLEFNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           F  L +  + G PV+GTCAG+I LA +  G    GQ  +G +D +V RN FG Q++SFEA
Sbjct: 61  FEPLVKLGQGGLPVFGTCAGMILLAREIAGS---GQPRLGLMDISVERNAFGRQVESFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L +P L     G E FR VFIRAP +++ G  V+VLA +
Sbjct: 118 DLDIPVL-----GEEPFRAVFIRAPYIIEAGGGVEVLARF 152

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A7Z0D4|PDXT_BACA2 Glutamine amidotransferase subunit PdxT OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxT PE=3 SV=1

 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI +++  G KGV I++P+QL ++  LI+PGGESTTM RL + ++ 
Sbjct: 2   LTIGVLGLQGAVREHIRSIEACGSKGVVIKRPEQLDDIDGLILPGGESTTMRRLMDTYHF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGTD---NAHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L++  L       E F GVFIRAP +L+ G DV+VL ++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGEDVEVLCEH 152

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A7GJS9|PDXT_BACCN Glutamine amidotransferase subunit PdxT OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pdxT PE=3 SV=1

 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 104/156 (66%), Gaps = 9/156 (5%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVL LQG+  EH+ A++  G + V +++ +QLQ +  LI+PGGESTTM RL + ++   
Sbjct: 4   IGVLGLQGAVREHVKAIEASGAEAVVVKQVEQLQEIDGLILPGGESTTMRRLIDKYHFME 63

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            LREF +  KP++GTCAG+I LANK +G +   +  +G +D TV RN FG Q  SFEA L
Sbjct: 64  PLREFARSRKPMFGTCAGMILLANKLIGYE---EAHIGAMDITVERNAFGRQKDSFEATL 120

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
           S+      +G  E F GVFIRAP V+D+  DV+VL+
Sbjct: 121 SI------KGVGEDFTGVFIRAPYVVDIADDVEVLS 150

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Bacillus cereus subsp. cytotoxis (strain NVH 391-98) (taxid: 315749)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|C5D338|PDXT_GEOSW Glutamine amidotransferase subunit PdxT OS=Geobacillus sp. (strain WCH70) GN=pdxT PE=3 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 106/160 (66%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ +++  G + V ++K +QL+ +  LI+PGGESTTM RL + +  
Sbjct: 2   MKIGVLGLQGAVQEHVRSIEACGAEAVVVKKIEQLEEIDGLILPGGESTTMRRLMDKYGF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 62  IEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           ELS+  +A      + F GVFIRAP +++VG DV+VLA Y
Sbjct: 119 ELSIAGVA------DDFIGVFIRAPHIVEVGEDVEVLAKY 152

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Geobacillus sp. (strain WCH70) (taxid: 471223)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q6AFB8|PDXT_LEIXX Glutamine amidotransferase subunit PdxT OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=pdxT PE=3 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 97/159 (61%), Gaps = 6/159 (3%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLALQG   EH+  L  LG   V +R+PD+L+ V+ L+IPGGES+ M +LA    L  
Sbjct: 7   VGVLALQGDVREHLTVLWALGADAVRVRRPDELETVAGLVIPGGESSVMDKLARTVGLAG 66

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            LR  +  G PV+GTCAGLI LA+  V   + GQ  +GGLD  V RN FGSQ +SFE +L
Sbjct: 67  PLRNAIAGGLPVYGTCAGLIMLADTIV-DGIAGQRSLGGLDVAVRRNAFGSQAESFETDL 125

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161
           S P L     G E    VFIRAP V  VGP   VLA  P
Sbjct: 126 SFPTL-----GAEPMHAVFIRAPIVESVGPRATVLARVP 159

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Leifsonia xyli subsp. xyli (strain CTCB07) (taxid: 281090)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B7GFL9|PDXT_ANOFW Glutamine amidotransferase subunit PdxT OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxT PE=3 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 9/158 (5%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVL LQG+  EH+ +++  G + V I+K +QL  +  LIIPGGESTTM RL + +    
Sbjct: 4   IGVLGLQGAVREHVRSIEACGAEAVVIKKVEQLTQIDGLIIPGGESTTMRRLMDKYGFIE 63

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L++F + GKP++GTCAGLI LA K VG     +  +G +D TV RN FG Q +SFEA L
Sbjct: 64  PLKQFAREGKPMFGTCAGLIILAKKIVGYD---EPHLGLMDITVERNSFGRQRESFEASL 120

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           ++  +A      + F GVFIRAP ++ VG DVDVLA Y
Sbjct: 121 AIKGVA------DDFIGVFIRAPHIVSVGADVDVLATY 152

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q5L3Y1|PDXT_GEOKA Glutamine amidotransferase subunit PdxT OS=Geobacillus kaustophilus (strain HTA426) GN=pdxT PE=3 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++KP+QL+ +  L++PGGESTTM RL + + L
Sbjct: 1   MKIGVLGLQGAVREHVRAIEACGAEAVIVKKPEQLEGLDGLVLPGGESTTMRRLIDRYGL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 61  MEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 117

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           ELS+  +       + F GVFIRAP +++ G  VDVLA Y
Sbjct: 118 ELSIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY 151

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Geobacillus kaustophilus (strain HTA426) (taxid: 235909)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B8G664|PDXT_CHLAD Glutamine amidotransferase subunit PdxT OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxT PE=3 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 5/151 (3%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQG F EH A L+R+GV+ +E+R P QL  V  LIIPGGESTT+ RL   + +
Sbjct: 1   MTVGVLALQGDFREHCAVLRRIGVEPIEVRLPHQLAQVDHLIIPGGESTTIGRLLAIYQM 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              +R        +WGTCAG I LAN+ + QK GGQ  +G ++ T+ RN +GSQ+ SFEA
Sbjct: 61  LEPIRTRGGCDLAIWGTCAGAILLANEVMDQKQGGQPTLGLMNLTIRRNAYGSQLDSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVG 151
            +++P +     G E   GVFIRAP ++ +G
Sbjct: 121 PITMPII-----GEEPLPGVFIRAPQIMALG 146

Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 2

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
297796999	255	ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata	0.994	0.717	0.885	4e-90
18424366	255	Pyridoxal biosynthesis protein PDX2 [Ara	0.994	0.717	0.879	2e-89
325975749	255	pyridoxial biosynthesis 2 [Arabidopsis t	0.994	0.717	0.874	3e-88
224104651	254	predicted protein [Populus trichocarpa]	0.983	0.712	0.850	2e-85
225435289	252	PREDICTED: pyridoxal biosynthesis protei	0.951	0.694	0.851	3e-83
255578878	253	Glutamine amidotransferase subunit pdxT,	0.989	0.719	0.857	1e-81
388511885	253	unknown [Lotus japonicus]	0.945	0.687	0.821	1e-80
388512311	221	unknown [Lotus japonicus]	0.945	0.787	0.821	3e-80
359806630	254	uncharacterized protein LOC100776337 [Gl	0.956	0.692	0.835	2e-79
147820371	225	hypothetical protein VITISV_029033 [Viti	0.951	0.777	0.770	2e-79

>gi|297796999|ref|XP_002866384.1| ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata subsp. lyrata] gi|297312219|gb|EFH42643.1| ATPDX2/EMB2407/PDX2 [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (859), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 162/183 (88%), Positives = 173/183 (94%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVC 180
           ++SVP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQE  
Sbjct: 121 DISVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 LMP 183
            +P
Sbjct: 181 ALP 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424366|ref|NP_568922.1| Pyridoxal biosynthesis protein PDX2 [Arabidopsis thaliana] gi|75154761|sp|Q8LAD0.1|PDX2_ARATH RecName: Full=Pyridoxal biosynthesis protein PDX2; AltName: Full=Probable glutamine amidotransferase; Short=AtPDX2; AltName: Full=Protein EMBRYO DEFECTIVE 2407 gi|21593486|gb|AAM65453.1| imidazoleglycerol-phosphate synthase subunit H-like [Arabidopsis thaliana] gi|26449721|dbj|BAC41984.1| putative imidazoleglycerol-phosphate synthase subunit H [Arabidopsis thaliana] gi|28950813|gb|AAO63330.1| At5g60540 [Arabidopsis thaliana] gi|332009958|gb|AED97341.1| Pyridoxal biosynthesis protein PDX2 [Arabidopsis thaliana]

 Score =  333 bits (853), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/183 (87%), Positives = 172/183 (93%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVC 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQE  
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 LMP 183
            +P
Sbjct: 181 ALP 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325975749|gb|ADZ47881.1| pyridoxial biosynthesis 2 [Arabidopsis thaliana]

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/183 (87%), Positives = 170/183 (92%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSS IIPGGESTTMA+LAEYHNL
Sbjct: 1   MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSPIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVKMGKPVWGTCAGLIFLA +AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct: 61  FPALREFVKMGKPVWGTCAGLIFLAGRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVC 180
           ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQE  
Sbjct: 121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query: 181 LMP 183
            +P
Sbjct: 181 ALP 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104651|ref|XP_002313515.1| predicted protein [Populus trichocarpa] gi|222849923|gb|EEE87470.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/181 (85%), Positives = 169/181 (93%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLALQGSFNEHIAAL RLGVKG+EIRKP+QLQNV+SLIIPGGESTTMA+LAE+HNLFP
Sbjct: 4   VGVLALQGSFNEHIAALARLGVKGMEIRKPEQLQNVTSLIIPGGESTTMAKLAEFHNLFP 63

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
           ALREFV+MGKPVWGTCAGLIFLANKA+GQK GGQELVGGLDCTVHRN+FGSQIQSFEAEL
Sbjct: 64  ALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQELVGGLDCTVHRNYFGSQIQSFEAEL 123

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLM 182
           +VP LA +EGGPETFRGVFIRAPA+L+VGP VDVLA+ PVPS  VLYSSS V+IQE   +
Sbjct: 124 TVPELACKEGGPETFRGVFIRAPAILEVGPGVDVLAECPVPSTNVLYSSSAVQIQEENSV 183

Query: 183 P 183
           P
Sbjct: 184 P 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435289|ref|XP_002285095.1| PREDICTED: pyridoxal biosynthesis protein PDX2-like [Vitis vinifera]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/175 (85%), Positives = 163/175 (93%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M VGVLALQGSFNEHIAAL++LGVKGVEIRKP+QL+ V SLIIPGGESTTMA+LAEYHNL
Sbjct: 1   MAVGVLALQGSFNEHIAALRKLGVKGVEIRKPEQLEQVGSLIIPGGESTTMAKLAEYHNL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVK+GKPVWGTCAGLIFLANKAVGQK GGQELVGGLDCTVHRNFFGSQIQSFE 
Sbjct: 61  FPALREFVKLGKPVWGTCAGLIFLANKAVGQKTGGQELVGGLDCTVHRNFFGSQIQSFET 120

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVE 175
           +LSVP LA++EGGPETFRGVFIRAPA+L+VGP V+VLADYPVPS K+  S S +E
Sbjct: 121 QLSVPELAAKEGGPETFRGVFIRAPAILEVGPKVEVLADYPVPSGKLFDSISALE 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578878|ref|XP_002530293.1| Glutamine amidotransferase subunit pdxT, putative [Ricinus communis] gi|223530191|gb|EEF32100.1| Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/182 (85%), Positives = 169/182 (92%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSFNEHIAALKRLGVKGVEIRKP+QL NV+SLIIPGGESTTMA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPEQLDNVTSLIIPGGESTTMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV+ GKPVWGTCAGLIFLA+KAVGQK GGQELVGGLDCTVHRN+FGSQIQSFE E
Sbjct: 63  PALREFVQTGKPVWGTCAGLIFLADKAVGQKTGGQELVGGLDCTVHRNYFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCL 181
           LSVP L S+EGGPETFRGVFIRAPAV++VGP V+VLA+YPVPS  VLYSSS V+IQE   
Sbjct: 123 LSVPELVSKEGGPETFRGVFIRAPAVVEVGPGVEVLAEYPVPSTNVLYSSSAVQIQEENA 182

Query: 182 MP 183
           +P
Sbjct: 183 LP 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511885|gb|AFK44004.1| unknown [Lotus japonicus]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 143/174 (82%), Positives = 160/174 (91%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSF+EHIAAL++LGV GVEIRKP+QL NV+SLIIPGGEST MA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFHEHIAALRKLGVNGVEIRKPEQLLNVNSLIIPGGESTAMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV++GKPVWGTCAGLIFLANKA GQK+GGQELVGGLDCTVHRNFFGSQIQSFE E
Sbjct: 63  PALREFVQLGKPVWGTCAGLIFLANKAAGQKIGGQELVGGLDCTVHRNFFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVE 175
           LSVP LAS+EGGPETFRG+FIRAPA+++ GPDV VLADYPV SN++  + S  E
Sbjct: 123 LSVPELASKEGGPETFRGIFIRAPAIIEAGPDVQVLADYPVRSNRLSTADSPTE 176

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512311|gb|AFK44217.1| unknown [Lotus japonicus]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/174 (82%), Positives = 160/174 (91%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSF+EHIAAL++LGV GVEIRKP+QL NV+SLIIPGGEST MA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFHEHIAALRKLGVNGVEIRKPEQLLNVNSLIIPGGESTAMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV++GKPVWGTCAGLIFLANKA GQK+GGQELVGGLDCTVHRNFFGSQIQSFE E
Sbjct: 63  PALREFVQLGKPVWGTCAGLIFLANKAAGQKIGGQELVGGLDCTVHRNFFGSQIQSFETE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVE 175
           LSVP LAS+EGGPETFRG+FIRAPA+++ GPDV VLADYPV SN++  + S  E
Sbjct: 123 LSVPELASKEGGPETFRGIFIRAPAIIEAGPDVQVLADYPVRSNRLSTADSPTE 176

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806630|ref|NP_001241020.1| uncharacterized protein LOC100776337 [Glycine max] gi|255639403|gb|ACU19997.1| unknown [Glycine max]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 164/176 (93%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQGSFNEHIAAL+RLGV+GVEIRKP+QL  +SSLIIPGGESTTMA+LAEYHNLF
Sbjct: 3   VVGVLALQGSFNEHIAALRRLGVQGVEIRKPEQLNTISSLIIPGGESTTMAKLAEYHNLF 62

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
           PALREFV+MGKPVWGTCAGLIFLANKA+GQK GGQ LVGGLDCTVHRNFFGSQIQSFEAE
Sbjct: 63  PALREFVQMGKPVWGTCAGLIFLANKAIGQKTGGQYLVGGLDCTVHRNFFGSQIQSFEAE 122

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQ 177
           LSVP L S+EGGPETF G+FIRAPA+L+ GP+V VLADYPVPS+++L S S++E Q
Sbjct: 123 LSVPELVSKEGGPETFCGIFIRAPAILEAGPEVQVLADYPVPSSRLLSSDSSIEDQ 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820371|emb|CAN65506.1| hypothetical protein VITISV_029033 [Vitis vinifera]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 162/192 (84%), Gaps = 17/192 (8%)

Query: 1   MVVGVLALQGSFNEHIAA-----------------LKRLGVKGVEIRKPDQLQNVSSLII 43
           M VGVLALQGSFNEHIA                  L++LGVKGVEIRKP+QL+ V SLII
Sbjct: 1   MAVGVLALQGSFNEHIAGISLYFRDVLSVCESSQPLRKLGVKGVEIRKPEQLEQVGSLII 60

Query: 44  PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLD 103
           PGGESTTMA+LAEYHNLFPALREFVK+GKPVWGTCAGLIFLANKAVGQK GGQELVGGLD
Sbjct: 61  PGGESTTMAKLAEYHNLFPALREFVKLGKPVWGTCAGLIFLANKAVGQKTGGQELVGGLD 120

Query: 104 CTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVP 163
           CTVHRNFFGSQIQSFE ZLSVP LA++EGGPETFRGVFIRAPA+L+VGP V+VLADYPVP
Sbjct: 121 CTVHRNFFGSQIQSFETZLSVPELAAKEGGPETFRGVFIRAPAILEVGPKVEVLADYPVP 180

Query: 164 SNKVLYSSSTVE 175
           S K+  S S +E
Sbjct: 181 SGKLFDSISALE 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2175083	255	PDX2 "pyridoxine biosynthesis	0.994	0.717	0.879	1.3e-82
UNIPROTKB|G4N4K4	246	MGG_05981 "Glutamine amidotran	0.798	0.597	0.5	1.1e-32
UNIPROTKB|Q3Z8V9	195	pdxT "Glutamine amidotransfera	0.842	0.794	0.496	1.8e-32
TIGR_CMR|DET_0598	195	DET_0598 "SNO glutamine amidot	0.842	0.794	0.496	1.8e-32
TIGR_CMR|CHY_2702	191	CHY_2702 "glutamine amidotrans	0.815	0.785	0.481	2.9e-32
ASPGD|ASPL0000007180	271	AN6141 [Emericella nidulans (t	0.836	0.568	0.494	4.7e-32
TIGR_CMR|BA_0011	196	BA_0011 "glutamine amidotransf	0.809	0.760	0.455	2e-31
DICTYBASE|DDB_G0288305	248	pdx2 "putative pyridoxal biosy	0.684	0.508	0.448	2.5e-26
UNIPROTKB|O06210	198	pdxT "Glutamine amidotransfera	0.815	0.757	0.430	1.4e-25
CGD|CAL0006041	249	SNO1 [Candida albicans (taxid:	0.934	0.690	0.398	7.6e-25

TAIR|locus:2175083 PDX2 "pyridoxine biosynthesis 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 161/183 (87%), Positives = 172/183 (93%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M VGVLALQGSFNEHIAAL+RLGV+GVEIRK DQL  VSSLIIPGGESTTMA+LAEYHNL
Sbjct:     1 MTVGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
             FPALREFVKMGKPVWGTCAGLIFLA++AVGQK GGQELVGGLDCTVHRNFFGSQIQSFEA
Sbjct:    61 FPALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEA 120

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVC 180
             ++ VP L SQEGGPET+RGVFIRAPAVLDVGPDV+VLADYPVPSNKVLYSSSTV+IQE  
Sbjct:   121 DILVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEED 180

Query:   181 LMP 183
              +P
Sbjct:   181 ALP 183

GO:0005737 "cytoplasm" evidence=ISM

GO:0008615 "pyridoxine biosynthetic process" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0004359 "glutaminase activity" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042819 "vitamin B6 biosynthetic process" evidence=IGI;RCA;IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|G4N4K4 MGG_05981 "Glutamine amidotransferase subunit pdxT" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 86/172 (50%), Positives = 104/172 (60%)

Query:     1 MVVGVLALQGSFNEHIAALKR----LGVKGV-----------EIRKPDQLQNVSSLIIPG 45
             + VGVLALQG+F EH+  L+R     G + V           E+R PDQL     L+IPG
Sbjct:     8 VTVGVLALQGAFEEHLKLLQRASTLFGSRHVAAKRVPEFEFLEVRTPDQLARCDGLVIPG 67

Query:    46 GESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC 104
             GESTT+A +A   NL   LR+FVK+  K  WGTCAGLI LA++A G K GGQELVGGL  
Sbjct:    68 GESTTLAFVARQTNLMEPLRDFVKVDRKSTWGTCAGLILLADEATGAKKGGQELVGGLHV 127

Query:   105 TVHRNFFGSQIQSFEAELSVPALASQ-----EGGPET----FRGVFIRAPAV 147
               HRN FG Q+ SF+A+L +P L  +     EG   T    F GVFIRAP V
Sbjct:   128 RAHRNHFGRQVHSFQADLELPFLGDKAGSGGEGDDSTATRPFPGVFIRAPVV 179

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3Z8V9 pdxT "Glutamine amidotransferase subunit PdxT" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 80/161 (49%), Positives = 102/161 (63%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GVLALQG+F EHI  L+ LG + VE+RK ++L  +S LIIPGGESTT+ +L     L
Sbjct:     1 MKIGVLALQGAFREHINMLRTLGAEAVEVRKAEELAELSGLIIPGGESTTITKLLYTFGL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                +++  + G PVWGTCAG+I LA +  G  + G + +  +D TV RN FG Q+ SFEA
Sbjct:    61 AKPVKDLARNGMPVWGTCAGMICLAKELSGD-ISGVKTLELMDITVRRNAFGRQVDSFEA 119

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161
              L V AL   EGG   F  VFIRAP V   G  V+VLA  P
Sbjct:   120 MLKVKAL---EGGD--FPAVFIRAPLVEKTGQWVEVLAKLP 155

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0598 DET_0598 "SNO glutamine amidotransferase family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 80/161 (49%), Positives = 102/161 (63%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GVLALQG+F EHI  L+ LG + VE+RK ++L  +S LIIPGGESTT+ +L     L
Sbjct:     1 MKIGVLALQGAFREHINMLRTLGAEAVEVRKAEELAELSGLIIPGGESTTITKLLYTFGL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                +++  + G PVWGTCAG+I LA +  G  + G + +  +D TV RN FG Q+ SFEA
Sbjct:    61 AKPVKDLARNGMPVWGTCAGMICLAKELSGD-ISGVKTLELMDITVRRNAFGRQVDSFEA 119

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161
              L V AL   EGG   F  VFIRAP V   G  V+VLA  P
Sbjct:   120 MLKVKAL---EGGD--FPAVFIRAPLVEKTGQWVEVLAKLP 155

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2702 CHY_2702 "glutamine amidotransferase, SNO family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 76/158 (48%), Positives = 99/158 (62%)

Query:     1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
             M +GV+A+QG+F EH   L RLGV+ + IR+P+QL  +  +IIPGGESTT+ +L    NL
Sbjct:     1 MKIGVIAMQGAFREHEQTLARLGVETLRIRRPEQLSQIDGIIIPGGESTTIGKLLGDFNL 60

Query:    61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
                LRE +  G PV+GTCAG+I LA +        Q  +G +D  V RN FG Q+ SFE 
Sbjct:    61 MEPLRERILSGLPVFGTCAGMILLAKEIENSN---QPRIGTMDIKVARNAFGRQVDSFEV 117

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
             +L +P     E G E  R VFIRAP +L+V P V VLA
Sbjct:   118 DLEIP-----EVGQEPVRAVFIRAPYILEVKPSVQVLA 150

GO:0008152 "metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

ASPGD|ASPL0000007180 AN6141 [Emericella nidulans (taxid:162425)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 83/168 (49%), Positives = 106/168 (63%)

Query:     1 MVVGVLALQGSFNEHIAALKR----LGVKG-------VEIRKPDQLQNVSSLIIPGGEST 49
             + VGVLALQG+F EH+  LK+    LG +        +EIR P +L+   +L++PGGEST
Sbjct:     4 ITVGVLALQGAFLEHLELLKKAAASLGSQQSSPQWEFLEIRTPQELKRCDALVLPGGEST 63

Query:    50 TMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108
              ++ +A   NL   LR+FVK+  KP WGTCAGLI LA  A   K GGQEL+GGLD  V+R
Sbjct:    64 AISLVAARSNLLEPLRDFVKVHRKPTWGTCAGLILLAESANRTKKGGQELIGGLDVRVNR 123

Query:   109 NFFGSQIQSFEAELSVPALASQEGGPET-FRGVFIRAPAVLDVGPDVD 155
             N FG Q +SF+A L +P L S  G P+  F  VFIRAP V  + P  D
Sbjct:   124 NHFGRQTESFQAPLDLPFL-STSGTPQQPFPAVFIRAPVVEKILPHHD 170

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008614 "pyridoxine metabolic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

TIGR_CMR|BA_0011 BA_0011 "glutamine amidotransferase, SNO family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 72/158 (45%), Positives = 102/158 (64%)

Query:     3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
             +GVL LQG+  EH+ +++  G + V +++ +QL+ +  LI+PGGESTTM RL + ++   
Sbjct:     4 IGVLGLQGAVREHVKSVEASGAEAVVVKRIEQLEEIDGLILPGGESTTMRRLIDKYDFME 63

Query:    63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
              LR F K GKP++GTCAG+I LA   +G     +  +G +D TV RN FG Q  SFEA L
Sbjct:    64 PLRTFAKSGKPMFGTCAGMILLAKTLIGYD---EAHIGAMDITVERNAFGRQKDSFEAAL 120

Query:   123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
             S+      +G  E F GVFIRAP V+DV  DV+VL+ +
Sbjct:   121 SI------KGVGEDFVGVFIRAPYVVDVADDVEVLSTH 152

GO:0008152 "metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

DICTYBASE|DDB_G0288305 pdx2 "putative pyridoxal biosynthesis protein PDX2" [Dictyostelium discoideum (taxid:44689)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/136 (44%), Positives = 88/136 (64%)

Query:    37 NVSSLIIPGGESTTMARLAEYHN----LFPALREFVKMGKPVWGTCAGLIFLANKAVGQK 92
             N   +I+PGGEST+MA +A  +N    +F  L+E++K G  +WGTCAG I L+N   GQK
Sbjct:    61 NPHGIILPGGESTSMAIIASSNNDGENIFTFLKEYIKQGNFIWGTCAGSIMLSNNVDGQK 120

Query:    93 LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGP----ETFRGVFIRAPAVL 148
             +GGQ L+GGLD  + RN+FG QI SFE ++++    S+        E F  +FIRAPA+L
Sbjct:   121 VGGQSLIGGLDVLISRNYFGRQIDSFETKINLNLKFSKNNNNSILLENFEAIFIRAPAIL 180

Query:   149 DV--GPDVDVLADYPV 162
             DV    +V+++ +Y V
Sbjct:   181 DVIDKENVEIIGEYIV 196

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|O06210 pdxT "Glutamine amidotransferase subunit PdxT" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 68/158 (43%), Positives = 95/158 (60%)

Query:     3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
             VGVLALQG   EH+AAL+  G + + +R+ D+L  V +L+IPGGESTTM+ L    +L  
Sbjct:     6 VGVLALQGDTREHLAALRECGAEPMTVRRRDELDAVDALVIPGGESTTMSHLLLDLDLLG 65

Query:    63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVG--GLDCTVHRNFFGSQIQSFEA 120
              LR  +  G P +G+CAG+I LA++ +     G++ +    ++ TV RN FGSQ+ SFE 
Sbjct:    66 PLRARLADGLPAYGSCAGMILLASEILDAGAAGRQALPLRAMNMTVRRNAFGSQVDSFEG 125

Query:   121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
             ++    L       +  R VFIRAP V  VG  V VLA
Sbjct:   126 DIEFAGL------DDPVRAVFIRAPWVERVGDGVQVLA 157

GO:0016843 "amine-lyase activity" evidence=IDA

GO:0040007 "growth" evidence=IDA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IDA

CGD|CAL0006041 SNO1 [Candida albicans (taxid:5476)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 75/188 (39%), Positives = 101/188 (53%)

Query:     1 MVVGVLALQGSFNEHIAALKRL--------GVKGV---EIRKPDQLQNVSSLIIPGGEST 49
             + +GVLALQG+F EHIA  K L         V      E+R  + L+   SL+IPGGES+
Sbjct:     7 VTIGVLALQGAFREHIAYFKHLIESNPDEYAVYDFDIKEVRTKEDLELCDSLVIPGGESS 66

Query:    50 TMARLAEYHNLFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108
             +M+ +AE   L P L +FV    K VWGTCAGLIFL+ + +   +  Q ++G LD  V R
Sbjct:    67 SMSYIAERTELLPHLYKFVSDESKSVWGTCAGLIFLSKQLING-IENQRVLGALDIEVSR 125

Query:   109 NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVL 168
             N FG QI SFE  L   +      G   F  VFIRAP V  +    D L +  + SN   
Sbjct:   126 NAFGRQIDSFEQSLDFSSFIP---GCTDFPTVFIRAPVVTKILNQKDSLKEGVIRSNNSY 182

Query:   169 YSSSTVEI 176
              + + V++
Sbjct:   183 QNQAPVKV 190

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0008614 "pyridoxine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7IEZ6	PDXT_THEAB	2, ., 6, ., -, ., -	0.4316	0.9184	0.8989	yes	no
Q2RMI9	PDXT_MOOTA	2, ., 6, ., -, ., -	0.4562	0.8260	0.8085	yes	no
Q6AFB8	PDXT_LEIXX	2, ., 6, ., -, ., -	0.5094	0.8315	0.7727	yes	no
A7NQB7	PDXT_ROSCS	2, ., 6, ., -, ., -	0.4620	0.8260	0.8042	yes	no
A5IJU9	PDXT_THEP1	2, ., 6, ., -, ., -	0.4312	0.8260	0.8085	yes	no
Q8LAD0	PDX2_ARATH	2, ., 6, ., -, ., -	0.8797	0.9945	0.7176	yes	no
Q81JC5	PDXT_BACCR	2, ., 6, ., -, ., -	0.4310	0.8695	0.8163	yes	no
Q9WYU3	PDXT_THEMA	2, ., 6, ., -, ., -	0.4375	0.8260	0.8085	yes	no
A5UY93	PDXT_ROSS1	2, ., 6, ., -, ., -	0.4746	0.8260	0.8042	yes	no
Q3Z8V9	PDXT_DEHE1	2, ., 6, ., -, ., -	0.4745	0.8967	0.8461	yes	no
A9B890	PDXT_HERA2	2, ., 6, ., -, ., -	0.4683	0.8315	0.8052	yes	no
Q5SKD6	PDXT_THET8	2, ., 6, ., -, ., -	0.4644	0.9130	0.8795	yes	no
A6LP41	PDXT_THEM4	2, ., 6, ., -, ., -	0.4207	0.9184	0.9037	yes	no
A0LUK9	PDXT_ACIC1	2, ., 6, ., -, ., -	0.5031	0.8315	0.7391	yes	no
A4J0G0	PDXT_DESRM	2, ., 6, ., -, ., -	0.4687	0.8260	0.8085	yes	no
B1L921	PDXT_THESQ	2, ., 6, ., -, ., -	0.4312	0.8260	0.8085	yes	no
Q72KF8	PDXT_THET2	2, ., 6, ., -, ., -	0.4808	0.9130	0.8795	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__2016__AT5G60540.1	annotation not avaliable (255 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_600071.1	annotation not avaliable (309 aa)	•		•	•	•		•		0.989
	scaffold_402521.1	annotation not avaliable (309 aa)	•		•	•	•		•		0.989
	fgenesh2_kg.3__1761__AT3G16050.1	annotation not avaliable (309 aa)	•		•	•	•		•		0.979
	fgenesh2_kg.810__1__AT3G16050.1	annotation not avaliable (314 aa)	•		•	•	•		•		0.979
	fgenesh2_kg.7__3196__AT5G37850.2	annotation not avaliable (309 aa)	•					•	•		0.847
	fgenesh2_kg.1__2499__AT1G22940.1	annotation not avaliable (522 aa)						•	•		0.811
	fgenesh1_pm.C_scaffold_4000431	annotation not avaliable (327 aa)	•						•		0.780
	fgenesh2_kg.8__763__AT5G48840.1	annotation not avaliable (310 aa)							•		0.726
	fgenesh2_kg.8__868__AT5G49970.1	annotation not avaliable (524 aa)	•					•	•		0.719
	fgenesh2_kg.3__2633__AT3G24030.1	annotation not avaliable (276 aa)							•		0.670

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
PLN02832	248	PLN02832, PLN02832, glutamine amidotransferase sub	1e-122
cd01749	183	cd01749, GATase1_PB, Glutamine Amidotransferase (G	2e-81
PRK13525	189	PRK13525, PRK13525, glutamine amidotransferase sub	5e-72
COG0311	194	COG0311, PDX2, Predicted glutamine amidotransferas	3e-66
PRK13527	200	PRK13527, PRK13527, glutamine amidotransferase sub	4e-62
TIGR03800	184	TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate	1e-55
pfam01174	188	pfam01174, SNO, SNO glutamine amidotransferase fam	2e-44
PRK13526	179	PRK13526, PRK13526, glutamine amidotransferase sub	2e-29
PRK13181	199	PRK13181, hisH, imidazole glycerol phosphate synth	4e-08
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	4e-07
cd03130	198	cd03130, GATase1_CobB, Type 1 glutamine amidotrans	4e-07
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	5e-07
cd01748	198	cd01748, GATase1_IGP_Synthase, Type 1 glutamine am	3e-06
PRK13141	205	PRK13141, hisH, imidazole glycerol phosphate synth	6e-06
pfam07685	157	pfam07685, GATase_3, CobB/CobQ-like glutamine amid	1e-05
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	2e-04
PRK01175	261	PRK01175, PRK01175, phosphoribosylformylglycinamid	2e-04
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	2e-04
PRK01077	451	PRK01077, PRK01077, cobyrinic acid a,c-diamide syn	5e-04
COG0118	204	COG0118, HisH, Glutamine amidotransferase [Amino a	5e-04
COG1797	451	COG1797, CobB, Cobyrinic acid a,c-diamide synthase	5e-04
PLN02617	538	PLN02617, PLN02617, imidazole glycerol phosphate s	8e-04

>gnl|CDD|215446 PLN02832, PLN02832, glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

 Score =  345 bits (887), Expect = e-122
 Identities = 141/175 (80%), Positives = 155/175 (88%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQGSFNEHIAAL+RLGV+ VE+RKP+QL+ VS LIIPGGESTTMA+LAE HNL
Sbjct: 2   MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNL 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
           FPALREFVK GKPVWGTCAGLIFLA +AVGQK GGQEL+GGLDCTVHRNFFGSQI SFE 
Sbjct: 62  FPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFET 121

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVE 175
           EL VP LA+ EGGPETFR VFIRAPA+L VGP V+VLA+YP+PS K LYSSST  
Sbjct: 122 ELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEYPLPSEKALYSSSTDA 176

Length = 248

>gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

 Score =  238 bits (611), Expect = 2e-81
 Identities = 88/159 (55%), Positives = 110/159 (69%), Gaps = 7/159 (4%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVLALQG F EHI AL+RLGV+ +E+R P+ L+ +  LIIPGGESTT+ +L     L  
Sbjct: 1   IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLD 60

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            LREF++ GKPV+GTCAGLI LA +   Q  GGQ L+G LD TV RN FG Q+ SFEA+L
Sbjct: 61  PLREFIRAGKPVFGTCAGLILLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADL 118

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161
            +P L     G   F  VFIRAP + +VGP V+VLA+Y 
Sbjct: 119 DIPGL-----GLGPFPAVFIRAPVIEEVGPGVEVLAEYD 152

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. Length = 183

>gnl|CDD|237411 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT; Provisional

 Score =  215 bits (549), Expect = 5e-72
 Identities = 83/160 (51%), Positives = 104/160 (65%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVLALQG+  EH+AAL+ LG + VE+R+P+ L  +  LI+PGGESTTM +L     L
Sbjct: 2   MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGL 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF+  G PV+GTCAG+I LA +  G     QE +G LD TV RN FG Q+ SFEA
Sbjct: 62  LEPLREFIASGLPVFGTCAGMILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           EL +  L    G P  F  VFIRAP + +VGP V+VLA  
Sbjct: 119 ELDIKGL----GEP--FPAVFIRAPYIEEVGPGVEVLATV 152

Length = 189

>gnl|CDD|223388 COG0311, PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

 Score =  200 bits (512), Expect = 3e-66
 Identities = 80/166 (48%), Positives = 104/166 (62%), Gaps = 10/166 (6%)

Query: 1   MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHN 59
           M +GVLALQG+  EH+ AL++ G  + VE+++P+ L+ V  LIIPGGESTT+ RL + + 
Sbjct: 1   MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYG 60

Query: 60  LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
           L   LREF+  G PV+GTCAGLI LA + +      Q L+G LD TV RN FG Q+ SFE
Sbjct: 61  LLEPLREFIADGLPVFGTCAGLILLAKEILDGP--EQPLLGLLDVTVRRNAFGRQVDSFE 118

Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYPV 162
            EL +       G P  F  VFIRAP + +VG  V+VLA      V
Sbjct: 119 TELDIEGF----GLPFPFPAVFIRAPVIEEVGDGVEVLATLDGRIV 160

Length = 194

>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT; Provisional

 Score =  190 bits (485), Expect = 4e-62
 Identities = 81/173 (46%), Positives = 104/173 (60%), Gaps = 17/173 (9%)

Query: 1   MVVGVLALQGSFNEHIAALKR----LGVKG--VEIRKPDQLQNVSSLIIPGGESTTMARL 54
           M +GVLALQG   EHI ALKR    LG+ G  VE+R+P  L +  +LIIPGGESTT+ RL
Sbjct: 1   MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRL 60

Query: 55  AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG--QELVGGLDCTVHRNFFG 112
            +   +   ++E ++ G P+ GTCAGLI LA +    ++    Q L+G +D TV RN FG
Sbjct: 61  MKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG 120

Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYPV 162
            Q  SFEAE+ +       G    F  VFIRAPA+  VG DV+VLA   D  V
Sbjct: 121 RQRDSFEAEIDL------SGLDGPFHAVFIRAPAITKVGGDVEVLAKLDDRIV 167

Length = 200

>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

 Score =  173 bits (441), Expect = 1e-55
 Identities = 78/159 (49%), Positives = 108/159 (67%), Gaps = 8/159 (5%)

Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
            +GVLALQG+  EH  AL+ LGV+GVE+++P+QL  +  LIIPGGESTT++RL + + +F
Sbjct: 1   KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMF 60

Query: 62  PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
             LR F+  G PV+GTCAGLI LA + +GQK   +  +G LD TV RN +G Q+ SFEAE
Sbjct: 61  EPLRNFILSGLPVFGTCAGLIMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAE 117

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           + +  +     G +   GVFIRAP ++ VG  V++LA  
Sbjct: 118 VDIKGV-----GDDPITGVFIRAPKIVSVGNGVEILAKV 151

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 184

>gnl|CDD|201639 pfam01174, SNO, SNO glutamine amidotransferase family

 Score =  145 bits (367), Expect = 2e-44
 Identities = 67/163 (41%), Positives = 92/163 (56%), Gaps = 16/163 (9%)

Query: 5   VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64
           VLALQG+  EH  A+K+ G +   +++P+ L    +LIIPGGEST M+ LA+ +  +  L
Sbjct: 1   VLALQGAVEEHEEAIKKCGAENKTVKRPEDLAQCDALIIPGGESTAMSLLAKRYGFYEPL 60

Query: 65  REFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQEL--VGGLDCTVHRNFFGSQIQSFEAE 121
            EFV    KP+WGTCAGLI L+     ++LG + +  +G L  TV RN FG Q+ SFE E
Sbjct: 61  YEFVHNPNKPIWGTCAGLILLS-----KQLGNELVKTLGLLKVTVKRNAFGRQVDSFEKE 115

Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLADYPV 162
                L         F GVFIRAP + ++     V VL +   
Sbjct: 116 CDFKNLI------PKFPGVFIRAPVIEEILDPEVVVVLYELDG 152

This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680. Length = 188

>gnl|CDD|184113 PRK13526, PRK13526, glutamine amidotransferase subunit PdxT; Provisional

 Score =  106 bits (266), Expect = 2e-29
 Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 17/158 (10%)

Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           VGVLA+QG + +H    K LGV+   ++  +   ++  L+IPGGESTT+  L   H +F 
Sbjct: 5   VGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFD 64

Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L  F    KPV+GTCAG I L+         G+  +  LD  V RN +G Q+ SF A++
Sbjct: 65  KLYNFCSS-KPVFGTCAGSIILSK--------GEGYLNLLDLEVQRNAYGRQVDSFVADI 115

Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           S           +   GVFIRAP  + VG  VD+L+ Y
Sbjct: 116 SFND--------KNITGVFIRAPKFIVVGNQVDILSKY 145

Length = 179

>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
          ALKRLGV+ V    P+++     +I+PG G     M  L E   L  AL+E V+  +PV 
Sbjct: 18 ALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVL 76

Query: 76 GTCAGLIFLAN 86
          G C G+  L  
Sbjct: 77 GICLGMQLLFE 87

Length = 199

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 3  VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
          V VL   GS        + AL+  G +       G  +     L +   LI+PGG  T  
Sbjct: 1  VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
            LA    L   LRE    GKPV G C G   L
Sbjct: 61 D-LAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153224 cd03130, GATase1_CobB, Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 14  EHIAALKRLGVKGVEIR--KPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVK 69
           E++  L+  G + V     K ++L +   L + GG  E      L+   ++  ++R F +
Sbjct: 15  ENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPE-LFAEELSANQSMRESIRAFAE 73

Query: 70  MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTV 106
            G P++  C GL++L      ++     + G L    
Sbjct: 74  SGGPIYAECGGLMYLGESLDDEEGQSYPMAGVLPGDA 110

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. Length = 198

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 3  VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
          V VL   G         + AL+  G +       G  +     L +   LI+PGG  T  
Sbjct: 1  VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
            LA    L   LRE    GKP+ G C G   L
Sbjct: 61 D-LARDEALLALLREAAAAGKPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
          AL+RLG + +    P+++ +   LI+PG G     MA L E   L  AL+E +  GKP  
Sbjct: 17 ALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRE-RGLIEALKEAIASGKPFL 75

Query: 76 GTCAGL 81
          G C G+
Sbjct: 76 GICLGM 81

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole- 4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 198

>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG----GESTTMARLAEYHNLFPALREFVKMGKP 73
          AL+RLG + V    P+++     +I+PG     +   MA L     L   ++E V  GKP
Sbjct: 18 ALERLGAEAVITSDPEEILAADGVILPGVGAFPD--AMANL-RERGLDEVIKEAVASGKP 74

Query: 74 VWGTCAGL 81
          + G C G+
Sbjct: 75 LLGICLGM 82

Length = 205

>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase domain

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 31  KPDQLQNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGKPVWGTCAGLIFLANKAV 89
                 +   +I+PGG+ T        ++ L  ALRE  + G P+ G C G   L    +
Sbjct: 1   DDALPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETII 60

Query: 90  GQKLGGQ-----ELVGGLDCTVH 107
               G       E +G LD    
Sbjct: 61  DGIEGTAGGERVEGLGLLDIETV 83

Length = 157

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGES-------TT 50
          M V V+   G+  +   + AL+ LGV    +   D  L +   +++PGG S         
Sbjct: 1  MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGA 60

Query: 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
          +A  +    +   +REF + G PV G C G
Sbjct: 61 IAAASP---IMQEVREFAEKGVPVLGICNG 87

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 19/97 (19%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKG--VEI----RKPDQLQNVSSLIIPGGESTT-- 50
          + V VL ++G+  E   + A +RLGV+   V I     +   + +   L+IPGG S    
Sbjct: 4  IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDY 63

Query: 51 -------MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
                  ARL     L   + EF+  G P+ G C G
Sbjct: 64 IRAGAIFAARLKAV--LRKDIEEFIDEGYPIIGICNG 98

Length = 261

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 37  NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89
           +   LI+PGG+S       E  +L   +R+ +K GKPV   C   + LA   +
Sbjct: 60  DYDLLILPGGDSWDNP---EAPDLAGLVRQALKQGKPVAAICGATLALARAGL 109

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 23/138 (16%)

Query: 14  EHIAALKRLGVKGVEIR-----KPDQLQNVSSLIIPGG--ESTTM--ARLAEYHNLFPAL 64
           E++  L+  G    E+        + L +   L + GG  E   +  A LA   ++  ++
Sbjct: 262 ENLELLRAAGA---ELVFFSPLADEALPDCDGLYLGGGYPE---LFAAELAANTSMRASI 315

Query: 65  REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF---EAE 121
           R     GKP++  C GL++L             +VG L           ++Q+    EAE
Sbjct: 316 RAAAAAGKPIYAECGGLMYLGESLEDADGERHPMVGLLPGEAS---MTKRLQALGYREAE 372

Query: 122 LSVPALASQEGGPETFRG 139
                L  + G  E  RG
Sbjct: 373 ALEDTLLGKAG--ERLRG 388

Length = 451

>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism]

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
          AL+RLG + V  R P+++     LI+PG G     MA L E   L  A++E V+ GKP  
Sbjct: 20 ALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFL 78

Query: 76 GTCAGL 81
          G C G+
Sbjct: 79 GICLGM 84

Length = 204

>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 6   LALQGSFN----EHIAALKRLGVKGVE---IRKPDQLQNVSSLIIPGGESTTMA-RLAEY 57
           +A   +FN    E++  L+  G + V    +   +   +V ++ + GG     A  L+  
Sbjct: 250 VARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSAN 309

Query: 58  HNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
            ++  A++ F   GKP++  C GL++L            E+VG L  +        ++Q+
Sbjct: 310 ESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGST---RMTKRLQA 366

Query: 118 F---EAELSVPALASQEGGPETFRG 139
               EAE     L  + G  E  RG
Sbjct: 367 LGYREAEAVDDTLLLRAG--EKIRG 389

Length = 451

>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWG 76
          A++ LG    +++ P+ + N   LI PG G   +   +     +  ALRE+++  +P  G
Sbjct: 25 AIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLG 84

Query: 77 TCAGLIFL 84
           C GL  L
Sbjct: 85 ICLGLQLL 92

Length = 538

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	100.0
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	100.0
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	100.0
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	100.0
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	100.0
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	100.0
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	100.0
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.97
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.96
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.95
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.95
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.92
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.89
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.88
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.85
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.82
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.82
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.81
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	99.8
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.8
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.78
PRK05665	240	amidotransferase; Provisional	99.78
PRK09065	237	glutamine amidotransferase; Provisional	99.77
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.75
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.74
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.72
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	99.69
PRK06895	190	putative anthranilate synthase component II; Provi	99.69
PRK00758	184	GMP synthase subunit A; Validated	99.68
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	99.68
PRK06490	239	glutamine amidotransferase; Provisional	99.68
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.68
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.67
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.66
PRK07567	242	glutamine amidotransferase; Provisional	99.66
PRK07053	234	glutamine amidotransferase; Provisional	99.65
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	99.65
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.64
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.61
PRK08250	235	glutamine amidotransferase; Provisional	99.61
PRK00784	488	cobyric acid synthase; Provisional	99.61
PRK00074	511	guaA GMP synthase; Reviewed	99.6
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	99.6
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.6
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.59
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.59
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.58
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.58
CHL00101	190	trpG anthranilate synthase component 2	99.58
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	99.55
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.55
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.54
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.51
PLN02347	536	GMP synthetase	99.51
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.51
PRK05670	189	anthranilate synthase component II; Provisional	99.51
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.49
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.48
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.47
PRK05637	208	anthranilate synthase component II; Provisional	99.45
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.43
PLN02335	222	anthranilate synthase	99.43
PRK13566	720	anthranilate synthase; Provisional	99.41
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.41
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.4
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.39
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.37
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.37
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.34
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.34
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.33
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.31
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	99.25
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.25
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.22
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	99.22
PRK06186	229	hypothetical protein; Validated	99.19
COG3442	250	Predicted glutamine amidotransferase [General func	99.18
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.18
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.15
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	99.15
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.14
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.13
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	99.09
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.09
COG2071	243	Predicted glutamine amidotransferases [General fun	99.08
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.06
PRK05380	533	pyrG CTP synthetase; Validated	99.05
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	99.04
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	99.02
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.0
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.0
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	98.99
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.99
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	98.97
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.97
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	98.93
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	98.89
PLN02327	557	CTP synthase	98.89
PLN02889	918	oxo-acid-lyase/anthranilate synthase	98.88
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	98.85
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.84
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.83
PHA03366	1304	FGAM-synthase; Provisional	98.81
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.79
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.76
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.75
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.75
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.64
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.63
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.63
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	98.61
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	98.6
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	98.58
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.56
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	98.54
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.53
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	98.52
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	98.52
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	98.47
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	98.46
PRK04155	287	chaperone protein HchA; Provisional	98.45
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.44
PRK11249	752	katE hydroperoxidase II; Provisional	98.35
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.35
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	98.31
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.28
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	98.14
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	98.14
COG4285	253	Uncharacterized conserved protein [Function unknow	98.12
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	98.07
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	98.04
KOG2764	247	consensus Putative transcriptional regulator DJ-1	98.0
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	97.93
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	97.72
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	97.68
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	97.55
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	97.54
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	97.51
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	97.34
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	97.32
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	97.23
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	96.55
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	96.54
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	96.31
COG3155	217	ElbB Uncharacterized protein involved in an early	96.3
PRK03094	80	hypothetical protein; Provisional	95.98
COG4242	293	CphB Cyanophycinase and related exopeptidases [Sec	95.8
COG4977	328	Transcriptional regulator containing an amidase do	95.56
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.53
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.22
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.98
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	93.42
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.96
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.85
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	92.84
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.83
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.69
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	92.62
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	92.41
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	91.95
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	91.95
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.52
PLN02929	301	NADH kinase	90.32
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.79
COG4635	175	HemG Flavodoxin [Energy production and conversion	89.49
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	88.81
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	87.65
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	86.79
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	86.6
PRK09271	160	flavodoxin; Provisional	84.28
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	84.12
COG4090	154	Uncharacterized protein conserved in archaea [Func	83.95
PRK02231	272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	81.7
PRK06242	150	flavodoxin; Provisional	80.76
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	80.07

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=100.00  E-value=7.8e-50  Score=313.58  Aligned_cols=164  Identities=48%  Similarity=0.755  Sum_probs=151.5

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCC-CeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035            1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G-~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~   79 (184)
                      ||||||++||++.||.+++++++ ++++.++.+++|+++|+||||||+||+|.+|.++.++.+.|++++++|+|+||+|+
T Consensus         1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA   80 (194)
T COG0311           1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA   80 (194)
T ss_pred             CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence            89999999999999999999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEe
Q 030035           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD  159 (184)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~  159 (184)
                      ||++||+.+.+  +..++.||+||++|.||+||||++||++++++..++    .+.+|+|+|||||+|++++++|+|||+
T Consensus        81 GlIlLakei~~--~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~----~~~~~~avFIRAP~I~~vg~~V~vLa~  154 (194)
T COG0311          81 GLILLAKEILD--GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFG----LPFPFPAVFIRAPVIEEVGDGVEVLAT  154 (194)
T ss_pred             hhhhhhhhhcC--CCCCcccceEEEEEEccccccccccceeeEEeeccc----CCCcceEEEEEcceeehhcCcceEeee
Confidence            99999999875  257899999999999999999999999999888775    223589999999999999999999999


Q ss_pred             cCCCCcccccC
Q 030035          160 YPVPSNKVLYS  170 (184)
Q Consensus       160 ~~~~~~~~~~~  170 (184)
                      +++....+.++
T Consensus       155 l~~~iVav~qg  165 (194)
T COG0311         155 LDGRIVAVKQG  165 (194)
T ss_pred             eCCEEEEEEeC
Confidence            99866555554

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=100.00  E-value=7.5e-47  Score=299.02  Aligned_cols=155  Identities=56%  Similarity=0.922  Sum_probs=135.4

Q ss_pred             EEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC-CcEEEEchHHHH
Q 030035            5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF   83 (184)
Q Consensus         5 Vl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g-~PvlGIC~G~Ql   83 (184)
                      ||++||+|.||+++|+++|.+.+.|+.+++|+++|+||||||+||+|.++.++.++.+.|++++++| +||||+|+||+|
T Consensus         1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl   80 (188)
T PF01174_consen    1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL   80 (188)
T ss_dssp             EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred             CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999998 999999999999


Q ss_pred             HHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecC--CCcEEEEecC
Q 030035           84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP  161 (184)
Q Consensus        84 La~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~--~~v~vLa~~~  161 (184)
                      ||+.+.++   .++.||+||++|.||+||||++||+++++++.++      .+|+++|||||+|.+++  ++|+|||+++
T Consensus        81 La~~v~~~---~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~vla~~~  151 (188)
T PF01174_consen   81 LAKEVEGQ---GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVEVLAELD  151 (188)
T ss_dssp             HEEEECSS---CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEEEEEEET
T ss_pred             hhhhhhhc---ccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeecccccccccccc
Confidence            99999763   6888999999999999999999999999999875      48999999999999998  8899999999


Q ss_pred             CCCcccc
Q 030035          162 VPSNKVL  168 (184)
Q Consensus       162 ~~~~~~~  168 (184)
                      +....+.
T Consensus       152 g~iVav~  158 (188)
T PF01174_consen  152 GKIVAVR  158 (188)
T ss_dssp             TEEEEEE
T ss_pred             cceEEEE
Confidence            7544443

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=100.00  E-value=1.1e-43  Score=294.30  Aligned_cols=165  Identities=81%  Similarity=1.323  Sum_probs=151.7

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      ||||||++||++.++.++|+++|++++.+++++++.++|+||||||++++|.+|....++.+.|++++++|+|+||||+|
T Consensus         2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G   81 (248)
T PLN02832          2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG   81 (248)
T ss_pred             cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence            79999999999999999999999999999999999999999999999999998887668999999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      ||||++.+.+.+.+.++.+|+||++|.||+||||++||++.+++||+|||+..|.+|+++|||||.|.+.+++|++|++|
T Consensus        82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy  161 (248)
T PLN02832         82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY  161 (248)
T ss_pred             HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence            99999998653223567899999999999999999999999999999999765668999999999999999999999999


Q ss_pred             CCCCc
Q 030035          161 PVPSN  165 (184)
Q Consensus       161 ~~~~~  165 (184)
                      +.++.
T Consensus       162 ~~~~~  166 (248)
T PLN02832        162 PLPSE  166 (248)
T ss_pred             ccccc
Confidence            86543

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=100.00  E-value=2.3e-42  Score=273.72  Aligned_cols=150  Identities=40%  Similarity=0.682  Sum_probs=135.9

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      ||||||++||++.||.++|++.|+++++++++++++++|+||||||+++++.++.++.++.+.|+++.+ ++|++|||+|
T Consensus         3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG   81 (179)
T PRK13526          3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG   81 (179)
T ss_pred             cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence            699999999999999999999999999999999999999999999988877666666689999999985 7899999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      ||+|++..        ++||++|++|.||+||||++||++++.++..        +|+++|||||+|++++++|+|||+|
T Consensus        82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~~~--------~~~~vFiRAP~i~~~~~~v~vla~~  145 (179)
T PRK13526         82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFNDK--------NITGVFIRAPKFIVVGNQVDILSKY  145 (179)
T ss_pred             HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcCCc--------eEEEEEEcCceEeEcCCCcEEEEEE
Confidence            99999862        5799999999999999999999999887743        6999999999999999999999999


Q ss_pred             CCCCccc
Q 030035          161 PVPSNKV  167 (184)
Q Consensus       161 ~~~~~~~  167 (184)
                      ++....+
T Consensus       146 ~~~~v~v  152 (179)
T PRK13526        146 QNSPVLL  152 (179)
T ss_pred             CCEEEEE
Confidence            8754433

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=100.00  E-value=3.8e-34  Score=228.46  Aligned_cols=156  Identities=49%  Similarity=0.852  Sum_probs=139.3

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                      |||||++||++.|+.++|+++|+++++++++++++++|+||||||+++.+..+.+..++.+.|++++++|+|++|||+|+
T Consensus         1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~   80 (184)
T TIGR03800         1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL   80 (184)
T ss_pred             CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence            79999999999999999999999999999988899999999999988887777776678899999999999999999999


Q ss_pred             HHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecC
Q 030035           82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP  161 (184)
Q Consensus        82 QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~  161 (184)
                      |+|++++.+..   ...||++|+++.||.+|+|++||+..++.++++.     .++.++|||+|+|.++|+++++||+++
T Consensus        81 qlL~~~~~~~~---~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~~-----~~~~~~~~h~~~v~~lp~~~~vla~~~  152 (184)
T TIGR03800        81 IMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVGD-----DPITGVFIRAPKIVSVGNGVEILAKVG  152 (184)
T ss_pred             HHHHhhhccCC---CCccCcEEEEEEeeccCCccccEEEEeecccCCC-----CcceEEEEcCCCcccCCCCeEEEEEeC
Confidence            99999985432   2359999999999999999999999888766631     258999999999999999999999987


Q ss_pred             CCCc
Q 030035          162 VPSN  165 (184)
Q Consensus       162 ~~~~  165 (184)
                      +...
T Consensus       153 ~~~~  156 (184)
T TIGR03800       153 NRIV  156 (184)
T ss_pred             CeeE
Confidence            7543

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=223.52  Aligned_cols=158  Identities=35%  Similarity=0.571  Sum_probs=134.8

Q ss_pred             EEEEEecCCCHHHHHHHHHHCC--------CeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC-C
Q 030035            2 VVGVLALQGSFNEHIAALKRLG--------VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-K   72 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G--------~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g-~   72 (184)
                      -||||++||.|.||.+.++++-        +++..|++++|++++|+||||||+|++|..+.++.++.+.|.+++.++ +
T Consensus        13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k   92 (226)
T KOG3210|consen   13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK   92 (226)
T ss_pred             EEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc
Confidence            3899999999999999998642        234567889999999999999999999999999889999999999887 9


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      |+||+|+||++|++.+.+.+. ....|++|+++|+||+||||..||....++..+-   .....|+|.|||||.++++-+
T Consensus        93 ~~WGTCAGmI~LS~ql~nek~-~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi---~~~~~FpATFIRAPVie~ILD  168 (226)
T KOG3210|consen   93 VTWGTCAGMIYLSQQLSNEKK-LVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFI---PHCNDFPATFIRAPVIEEILD  168 (226)
T ss_pred             cceeechhhhhhhhhhcCCcc-hhhhhhheeEEEeeccccchhhhheehhcccccc---cCcccCchhheechhHHHhcC
Confidence            999999999999999986433 6789999999999999999999998865544331   112479999999999999877


Q ss_pred             CcEEEEecCCC
Q 030035          153 DVDVLADYPVP  163 (184)
Q Consensus       153 ~v~vLa~~~~~  163 (184)
                      ...|++.|..+
T Consensus       169 ~I~V~~l~~~~  179 (226)
T KOG3210|consen  169 PIHVQVLYKLD  179 (226)
T ss_pred             chhheEEEEec
Confidence            77777777666

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=100.00  E-value=1.1e-31  Score=213.84  Aligned_cols=154  Identities=56%  Similarity=0.963  Sum_probs=139.2

Q ss_pred             EEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHH
Q 030035            3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI   82 (184)
Q Consensus         3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Q   82 (184)
                      ||||++||++.++.+.|++.|++++.++..++++++|++|+|||.++.++.+.+...+.++|++++++|+|+||||+|+|
T Consensus         1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q   80 (183)
T cd01749           1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI   80 (183)
T ss_pred             CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence            79999999999999999999999999998888999999999999887777666666788999999999999999999999


Q ss_pred             HHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecCC
Q 030035           83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPV  162 (184)
Q Consensus        83 lLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~~  162 (184)
                      +|++++.+.  +..+++|++|++|.||.+|+++++++..+.+++.+     +++++++|+|+|.|.++|+++++||+++.
T Consensus        81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~~~~~-----~~~~~~~~~h~~~v~~~p~~~~~la~~~~  153 (183)
T cd01749          81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLG-----LGPFPAVFIRAPVIEEVGPGVEVLAEYDG  153 (183)
T ss_pred             HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEcCCCCcCC-----CCccEEEEEECcEEEEcCCCcEEEEecCC
Confidence            999999763  57899999999999999999999998887766542     35799999999999999999999999875


Q ss_pred             C
Q 030035          163 P  163 (184)
Q Consensus       163 ~  163 (184)
                      -
T Consensus       154 ~  154 (183)
T cd01749         154 K  154 (183)
T ss_pred             E
Confidence            3

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.97  E-value=1.1e-29  Score=203.35  Aligned_cols=153  Identities=54%  Similarity=0.869  Sum_probs=136.7

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      |||+|+.+|||+.++.++|++.|++++.++.+++++++|++|||||.+..++.+.+...+.+.|+++.++++|++|||+|
T Consensus         2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G   81 (189)
T PRK13525          2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG   81 (189)
T ss_pred             CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence            89999999999999999999999999999988889999999999998777766666666788999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      +|+|++++++.   ..+++|++|+++.||.+|+++.+++.++.+..+      +++++++++|++.|.++|+++++||+.
T Consensus        82 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~------~~~~~~~~~H~d~v~~lp~~~~vlA~~  152 (189)
T PRK13525         82 MILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSFEAELDIKGL------GEPFPAVFIRAPYIEEVGPGVEVLATV  152 (189)
T ss_pred             HHHHHhhcccC---CCCceeeEEEEEEEccCCCceeeEEecccccCC------CCCeEEEEEeCceeeccCCCcEEEEEc
Confidence            99999999753   678999999999999999999998876555443      247999999999999999999999997


Q ss_pred             CC
Q 030035          161 PV  162 (184)
Q Consensus       161 ~~  162 (184)
                      ++
T Consensus       153 ~~  154 (189)
T PRK13525        153 GG  154 (189)
T ss_pred             CC
Confidence            53

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.96  E-value=8.4e-29  Score=198.73  Aligned_cols=145  Identities=19%  Similarity=0.311  Sum_probs=121.5

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      .|+|+.+ -||+.++.++|+++|++++++++++++.++|+||+||+ . ++++..|.+ .++.+.|++  ..|+|+||||
T Consensus         1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC   77 (192)
T PRK13142          1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC   77 (192)
T ss_pred             CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence            1889887 57999999999999999999999999999999999996 4 667776665 588999988  5689999999


Q ss_pred             hHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCccee-----EeeecCceEEecCCC
Q 030035           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFR-----GVFIRAPAVLDVGPD  153 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~-----a~firap~i~~~~~~  153 (184)
                      +|||||++.+++   +..++||++|++|.|         |+..+++||+|||+-. .+++     ++|+|||++. .++.
T Consensus        78 lGmQlL~~~~~e---g~~~GLgll~~~V~r---------f~~~~~vph~GWn~~~-~~~~l~~~~~yFVhSy~v~-~~~~  143 (192)
T PRK13142         78 LGMQLMYEHSDE---GDASGLGFIPGNISR---------IQTEYPVPHLGWNNLV-SKHPMLNQDVYFVHSYQAP-MSEN  143 (192)
T ss_pred             HHHHHHhhhccc---CCcCccCceeEEEEE---------CCCCCCCCcccccccC-CCCcccccEEEEECCCeEC-CCCC
Confidence            999999999843   357899999999988         5567889999998532 1344     8999999994 5678


Q ss_pred             cEEEEecCCC
Q 030035          154 VDVLADYPVP  163 (184)
Q Consensus       154 v~vLa~~~~~  163 (184)
                      +.+++.|..+
T Consensus       144 v~~~~~yg~~  153 (192)
T PRK13142        144 VIAYAQYGAD  153 (192)
T ss_pred             EEEEEECCCe
Confidence            9999999653

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=2.6e-27  Score=189.23  Aligned_cols=151  Identities=34%  Similarity=0.535  Sum_probs=124.1

Q ss_pred             CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-C-chhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G-~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |+|+|+.+ -||+.++.++|+++|+++++.++++++.++|+||+|| | +...|+.|.+. ++.+.|++.++.++|+|||
T Consensus         2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGI   80 (204)
T COG0118           2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFLGI   80 (204)
T ss_pred             CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEE
Confidence            68999987 6899999999999999999999999999999999999 6 68889999886 8999999999999999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecc-ccCCccccCC-----------CCCcceeEeeecCc
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPALASQE-----------GGPETFRGVFIRAP  145 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~-~~~~~~~~~~-----------~~~~~~~a~firap  145 (184)
                      |+|||||.+.+++  .+..++||+++++|.|         |+.+ +.+||||||+           +.++.-+..|.|+.
T Consensus        81 ClGMQlLfe~SeE--~~~~~GLg~i~G~V~r---------~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFVHSY  149 (204)
T COG0118          81 CLGMQLLFERSEE--GGGVKGLGLIPGKVVR---------FPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFVHSY  149 (204)
T ss_pred             eHhHHhhhhcccc--cCCCCCcceecceEEE---------cCCCCCCCCccccceeeccCCChhhcCCCCCCEEEEEEEE
Confidence            9999999999875  3345899999876655         5554 8999999993           22222578899999


Q ss_pred             eEEecCCCcEEE-EecCCC
Q 030035          146 AVLDVGPDVDVL-ADYPVP  163 (184)
Q Consensus       146 ~i~~~~~~v~vL-a~~~~~  163 (184)
                      ++....++..+. +.|..+
T Consensus       150 ~~~~~~~~~v~~~~~YG~~  168 (204)
T COG0118         150 YVPPGNPETVVATTDYGEP  168 (204)
T ss_pred             eecCCCCceEEEeccCCCe
Confidence            988744443333 444433

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.95  E-value=2.5e-26  Score=185.16  Aligned_cols=157  Identities=47%  Similarity=0.760  Sum_probs=129.3

Q ss_pred             CEEEEEecCCCHHHHHH----HHHHCCCeEEE--EcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQGSFNEHIA----ALKRLGVKGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~----~L~~~G~~v~~--v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      ||||||++||.+.++..    +|++.|.++.+  ++.++++.++|+||||||..+.+..+.+..++.+.|++++++++|+
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi   80 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI   80 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence            89999999999988654    56667875544  4556678899999999998777666666567899999999999999


Q ss_pred             EEEchHHHHHHHhhhccc--CCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035           75 WGTCAGLIFLANKAVGQK--LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~--~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      +|||+|+|+|++++++..  ....+++|++++++.+|.+|++..+++.++.+..      .|+++.+++.|++.+..+|+
T Consensus        81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~H~~~v~~lp~  154 (200)
T PRK13527         81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSG------LDGPFHAVFIRAPAITKVGG  154 (200)
T ss_pred             EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccc------cCCcceEEEEccccccccCC
Confidence            999999999999986422  2345789999999999999999988876654443      34689999999999999999


Q ss_pred             CcEEEEecCCC
Q 030035          153 DVDVLADYPVP  163 (184)
Q Consensus       153 ~v~vLa~~~~~  163 (184)
                      ++++||++++-
T Consensus       155 ~~~~la~~~~~  165 (200)
T PRK13527        155 DVEVLAKLDDR  165 (200)
T ss_pred             CeEEEEEECCE
Confidence            99999988754

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.92  E-value=2.4e-24  Score=175.33  Aligned_cols=148  Identities=20%  Similarity=0.366  Sum_probs=120.0

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |||||++++ ||+.++.++|+++|+++.++++++++.++|+||+||+.  ...+..|.+ .++.+.|++++++++|+|||
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI   80 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI   80 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence            799999999 99999999999999999999988888899999999943  356667665 47889999999999999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC-----------------CCCcceeEe
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-----------------GGPETFRGV  140 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-----------------~~~~~~~a~  140 (184)
                      |+|||+|++..++   +..++||+++++|.|-.-       ...+.+||+||++                 +.|+.++++
T Consensus        81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~  150 (210)
T CHL00188         81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY  150 (210)
T ss_pred             CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence            9999999998754   467899999998887421       1256789999981                 235677899


Q ss_pred             eecCceEEecCCCcEEEEecC
Q 030035          141 FIRAPAVLDVGPDVDVLADYP  161 (184)
Q Consensus       141 firap~i~~~~~~v~vLa~~~  161 (184)
                      |.|+..+.  |++.++|+...
T Consensus       151 ~~HS~~v~--p~~~~~l~~t~  169 (210)
T CHL00188        151 FVHSYGVM--PKSQACATTTT  169 (210)
T ss_pred             EeCccEec--CCCCceEEEEE
Confidence            99997774  44556666553

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.89  E-value=4.5e-22  Score=161.65  Aligned_cols=151  Identities=26%  Similarity=0.363  Sum_probs=117.1

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCC--eEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHH-HcCCcE
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPV   74 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~--~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~-~~g~Pv   74 (184)
                      |||+|+.+. ||+.++.++|++.|+  ++.+++++++++++|+|||||+..  +.+..+.+. ++.+.|+++. +.++|+
T Consensus         2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~Pv   80 (209)
T PRK13146          2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAV-GLGEAVIEAVLAAGRPF   80 (209)
T ss_pred             CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHHC-CcHHHHHHHHHhCCCcE
Confidence            799999984 589999999999999  888899889999999999999642  334455553 5666665554 589999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeec-ccCceeEEeeccccCCccccC-----------CCCCcceeEeee
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFI  142 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn-~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~fi  142 (184)
                      ||||+|+|+|++...+  .+...+||+++++|.|+ +.|.       ....|++||+           .+.|+.+.+.|-
T Consensus        81 lGiC~G~q~l~~~~~e--~~~~~glg~l~g~v~~~~~~~~-------~~~~p~~G~~~v~~~~~~~lf~~~~~~~~v~~~  151 (209)
T PRK13146         81 LGICVGMQLLFERGLE--HGDTPGLGLIPGEVVRFQPDGP-------ALKVPHMGWNTVDQTRDHPLFAGIPDGARFYFV  151 (209)
T ss_pred             EEECHHHHHHhhcccc--cCCCCCcceEeEEEEEcCCCCC-------CCccCccChHHeeeCCCChhccCCCCCCEEEEE
Confidence            9999999999998543  34688999999999997 4432       2345667765           134557899999


Q ss_pred             cCceEEecCCCcEEEEecCC
Q 030035          143 RAPAVLDVGPDVDVLADYPV  162 (184)
Q Consensus       143 rap~i~~~~~~v~vLa~~~~  162 (184)
                      |+..+...+ +.+++|+.+.
T Consensus       152 Hs~~v~~~~-~~~~la~s~~  170 (209)
T PRK13146        152 HSYYAQPAN-PADVVAWTDY  170 (209)
T ss_pred             eEEEEEcCC-CCcEEEEEcC
Confidence            999987665 5688887654

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.88  E-value=9.6e-22  Score=158.23  Aligned_cols=145  Identities=24%  Similarity=0.403  Sum_probs=111.9

Q ss_pred             CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-Cc-hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |||+|+.+ .||+.++.++|++.|+++.++++++++.++|+||||| |. .+.+..+.+ .++.+.|++   .++|||||
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI   76 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI   76 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence            89999987 5799999999999999999999988899999999999 65 445566654 367777775   48999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC-----------CCCCcceeEeeecCce
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFIRAPA  146 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~firap~  146 (184)
                      |+|||+|++++.+  .+...+||+++++|.|-.        .....+|++||+           .+.|+.+.+.|.|...
T Consensus        77 ClG~Qll~~~~~~--~~~~~~lg~~~g~v~~~~--------~~~~~~p~~G~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~  146 (196)
T PRK13170         77 CLGMQLLGERSEE--SGGVDCLGIIDGPVKKMT--------DFGLPLPHMGWNQVTPQAGHPLFQGIEDGSYFYFVHSYA  146 (196)
T ss_pred             CHHHHHHhhhccc--CCCCCCcccccEEEEECC--------CCCCCCCccccceeEeCCCChhhhCCCcCCEEEEECeee
Confidence            9999999999864  233788999999998831        012345666665           1345578899999853


Q ss_pred             EEecCCCcEEEEecCC
Q 030035          147 VLDVGPDVDVLADYPV  162 (184)
Q Consensus       147 i~~~~~~v~vLa~~~~  162 (184)
                         +|++..+||+.+.
T Consensus       147 ---lp~~~~~la~s~~  159 (196)
T PRK13170        147 ---MPVNEYTIAQCNY  159 (196)
T ss_pred             ---cCCCCcEEEEecC
Confidence               4667788887654

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=2.5e-21  Score=157.54  Aligned_cols=135  Identities=21%  Similarity=0.367  Sum_probs=109.0

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      .|+|+.+ -||..+..++|++.+.++.++++++++.++|+||+||+.  ++.+..+.+ .++.+.|++++++++|+||||
T Consensus         1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC   79 (210)
T PRK14004          1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC   79 (210)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence            0889887 579999999999999999999999999999999999974  567777755 589999999999999999999


Q ss_pred             hHHHHHHHhhhcccC----CCccccCcceeeeeecccCceeEEeeccccCCccccCC-------------CCCcceeEee
Q 030035           79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-------------GGPETFRGVF  141 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~----~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-------------~~~~~~~a~f  141 (184)
                      +|||+|++.+.+...    +..++||+++.+|.|-. +       ....+||+|||.             +.|+++++.|
T Consensus        80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~-~-------~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~  151 (210)
T PRK14004         80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFE-G-------KDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYF  151 (210)
T ss_pred             HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcC-C-------CCCcCCccCcccceeccCCCCccccCCCCCCEEEE
Confidence            999999999975321    24689999999988743 1       135679999982             1233556777


Q ss_pred             ecCc
Q 030035          142 IRAP  145 (184)
Q Consensus       142 irap  145 (184)
                      .|+.
T Consensus       152 ~HS~  155 (210)
T PRK14004        152 IHSY  155 (210)
T ss_pred             ecee
Confidence            7765

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=4.9e-21  Score=154.49  Aligned_cols=149  Identities=25%  Similarity=0.372  Sum_probs=109.8

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHH-HcCCcEEEE
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPVWGT   77 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~-~~g~PvlGI   77 (184)
                      .|+|+.+ -||..++.++|++.|++++++++++++.++|+|||||+.+  +.+..+.+ .++.+.|++++ +.++|+|||
T Consensus         1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi   79 (201)
T PRK13152          1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI   79 (201)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence            1888887 5699999999999999999999988899999999999754  33444544 46778887764 779999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC-----------CCCCcceeEeeecCce
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFIRAPA  146 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~firap~  146 (184)
                      |+|||+|+....+  ++..++||+++.+|.|-...       ....+||++|+           .+.+++++++|.|++.
T Consensus        80 C~G~Q~l~~~~~~--~~~~~~lg~~~g~v~~~~~~-------~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~vHS~~  150 (201)
T PRK13152         80 CLGMQLFLERGYE--GGVCEGLGFIEGEVVKFEED-------LNLKIPHMGWNELEILKQSPLYQGIPEKSDFYFVHSFY  150 (201)
T ss_pred             CHhHHHHhhcccc--cCCcCCcccccEEEEECCCC-------CCCcCCccCeEEEEECCCChhhhCCCCCCeEEEEcccE
Confidence            9999999997432  24578999999988772100       01223444443           2345578999999999


Q ss_pred             EEecCCCcEEEEec
Q 030035          147 VLDVGPDVDVLADY  160 (184)
Q Consensus       147 i~~~~~~v~vLa~~  160 (184)
                      +..++..+...+.+
T Consensus       151 v~~~~~~v~a~~~~  164 (201)
T PRK13152        151 VKCKDEFVSAKAQY  164 (201)
T ss_pred             eecCCCcEEEEECC
Confidence            98776544444444

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.85  E-value=4.5e-20  Score=148.48  Aligned_cols=153  Identities=27%  Similarity=0.349  Sum_probs=113.2

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      +|.|+.+ .||+.++.++|+++|++++++++++++.++|+||+||+ . ++.+..+.. .++.+.|+++++.++|+||||
T Consensus         1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC   79 (199)
T PRK13181          1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC   79 (199)
T ss_pred             CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence            1888887 46999999999999999999998888999999999995 3 344555544 468899999999999999999


Q ss_pred             hHHHHHHHhhhcccCCCccccCcceeeeeecccC----ceeEEeeccccC--CccccCCCCCcceeEeeecCceEEecCC
Q 030035           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG----SQIQSFEAELSV--PALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G----rqv~sf~~~~~~--~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      +|+|||++++.+   +..++||+++.+|.|+..+    .++...+..+.-  |-+   .+.|+++.+++.|...+...+ 
T Consensus        80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf---~~l~~~~~~~~~Hs~~v~~~~-  152 (199)
T PRK13181         80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLF---KGIEEGSYFYFVHSYYVPCED-  152 (199)
T ss_pred             HhHHHhhhhccc---CCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhH---cCCCCCCEEEEeCeeEeccCC-
Confidence            999999999864   4678999999999986432    122211111110  001   234557888899987776555 


Q ss_pred             CcEEEEecCC
Q 030035          153 DVDVLADYPV  162 (184)
Q Consensus       153 ~v~vLa~~~~  162 (184)
                      ...++|+.+.
T Consensus       153 ~~~~lA~s~~  162 (199)
T PRK13181        153 PEDVLATTEY  162 (199)
T ss_pred             cccEEEEEcC
Confidence            3568888764

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.82  E-value=2.9e-19  Score=162.62  Aligned_cols=145  Identities=25%  Similarity=0.372  Sum_probs=115.0

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      +|+|+.+ -||+.++.++|+++|+++.+++.+++++++|+|||||+.+  +.|..+.+ .++.+.|+++++.++|+||||
T Consensus         8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC   86 (538)
T PLN02617          8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC   86 (538)
T ss_pred             eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence            6888887 5799999999999999999999888899999999999643  45655554 478899999999999999999


Q ss_pred             hHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC-----------CCCcceeEeeecCceE
Q 030035           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-----------GGPETFRGVFIRAPAV  147 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-----------~~~~~~~a~firap~i  147 (184)
                      +|||||++++.+  .+...+||++++++.|.  +++.     .+.+|++||+.           +.+ .++++|.|+..+
T Consensus        87 ~G~QlLa~~~~E--~g~~~glg~l~G~v~~~--~~~~-----~~~vp~iGw~~V~~~~~spL~~~l~-~~~vy~vHSy~v  156 (538)
T PLN02617         87 LGLQLLFESSEE--NGPVEGLGVIPGVVGRF--DSSN-----GLRVPHIGWNALQITKDSELLDGVG-GRHVYFVHSYRA  156 (538)
T ss_pred             HHHHHHhhhhhh--cCCccCcccccceEEEC--CccC-----CCCCCeecceEEEecCCChhHhcCC-CcEEEEEeEEEE
Confidence            999999998853  35678999999998883  2211     35678888873           222 457889999888


Q ss_pred             EecCCCcEEE
Q 030035          148 LDVGPDVDVL  157 (184)
Q Consensus       148 ~~~~~~v~vL  157 (184)
                      ..++.+...+
T Consensus       157 ~~~p~~~~~v  166 (538)
T PLN02617        157 TPSDENKDWV  166 (538)
T ss_pred             EecCCCCcEE
Confidence            7776554433

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.82  E-value=5.1e-19  Score=142.07  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=111.6

Q ss_pred             EEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035            3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (184)
Q Consensus         3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~   79 (184)
                      |+|+.+ .||+.++.++|+++|+++.+++..++++++|+||||||..  +.+..+ +..++.+.|+++.++++||||||+
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilGiC~   79 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLGICL   79 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEEECH
Confidence            577777 4578889999999999999999888889999999999632  223334 334678999999999999999999


Q ss_pred             HHHHHHHhhhcccCCCccccCcceeeeeecccC--c---eeEEeecccc--CCccccCCCCCcceeEeeecCceEEecCC
Q 030035           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--S---QIQSFEAELS--VPALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G--r---qv~sf~~~~~--~~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      |+|+|++++.+  ++..++||+++++|.|+.-+  .   ++.-......  -+-+   .+.|+.+++.+.|...+... +
T Consensus        80 G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf---~~l~~~~~v~~~Hs~~v~~~-~  153 (198)
T cd01748          80 GMQLLFESSEE--GGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLF---KGIPDGSYFYFVHSYYAPPD-D  153 (198)
T ss_pred             HHHHhcccccc--CCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhh---hCCCCCCeEEEEeEEEEecC-C
Confidence            99999999753  34678999999999985432  1   1111111110  0111   23456788999999888754 4


Q ss_pred             CcEEEEecCC
Q 030035          153 DVDVLADYPV  162 (184)
Q Consensus       153 ~v~vLa~~~~  162 (184)
                      +..+||+.++
T Consensus       154 ~~~~la~s~~  163 (198)
T cd01748         154 PDYILATTDY  163 (198)
T ss_pred             cceEEEEecC
Confidence            5788998764

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.81  E-value=1.1e-18  Score=140.89  Aligned_cols=154  Identities=26%  Similarity=0.358  Sum_probs=112.5

Q ss_pred             EEEEEecCC-CHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~qG-~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      +|.||.+.+ |...+.++|++.|+++.+++++++++++|+||||||..  +.+..+.. .++.++|+++++.++|+||||
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~~-~~~~~~i~~~~~~~~pvlGIC   79 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRE-RGLDEVIKEAVASGKPLLGIC   79 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cChHHHHHHHHHCCCcEEEEC
Confidence            478888854 67778899999999999999888899999999999642  33333332 467889999999999999999


Q ss_pred             hHHHHHHHhhhcccCCCccccCcceeeeeecccCc-----eeEEeecccc--CCccccCCCCCcceeEeeecCceEEecC
Q 030035           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS-----QIQSFEAELS--VPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr-----qv~sf~~~~~--~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      +|+|+|++.+.+  .+.+.+||++++++.|+..+.     +.......+.  -+-+   .+.|..+.+.+.|+..+ .++
T Consensus        80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~---~~l~~~~~v~~~Hs~~v-~~~  153 (205)
T PRK13141         80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLL---KGIPDGAYVYFVHSYYA-DPC  153 (205)
T ss_pred             HHHHHhhhcccc--CCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhh---hCCCCCCEEEEECeeEe-ccC
Confidence            999999998753  456889999999999975221     1111111111  0111   23455678888898877 467


Q ss_pred             CCcEEEEecCC
Q 030035          152 PDVDVLADYPV  162 (184)
Q Consensus       152 ~~v~vLa~~~~  162 (184)
                      ++..++|+.++
T Consensus       154 ~~~~v~a~~~~  164 (205)
T PRK13141        154 DEEYVAATTDY  164 (205)
T ss_pred             CcCeEEEEEeC
Confidence            78899998653

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=99.80  E-value=3.5e-19  Score=143.52  Aligned_cols=103  Identities=19%  Similarity=0.380  Sum_probs=88.1

Q ss_pred             ecCCCHHHHHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035            7 ALQGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIF   83 (184)
Q Consensus         7 ~~qG~~~~~~~~L~~~G~~v~~v~~~--~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql   83 (184)
                      ||.-.|.++.++|+++|++++.+++.  +++.++|+||||||+++. +.+|.++.++.+.|++++++|+|++|||.||||
T Consensus         8 aF~f~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~ql   87 (198)
T cd03130           8 AFNFYYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY   87 (198)
T ss_pred             ccccccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHH
Confidence            46667999999999999999999874  667789999999997654 567766557889999999999999999999999


Q ss_pred             HHHhhhcccCCCccccCcceeeeeec
Q 030035           84 LANKAVGQKLGGQELVGGLDCTVHRN  109 (184)
Q Consensus        84 La~~~~~~~~~~~~~LG~ldv~v~rn  109 (184)
                      |++.+.+..+...++||++|+++.+.
T Consensus        88 L~~~~~d~~g~~~~glGll~~~~~~~  113 (198)
T cd03130          88 LGESLDDEEGQSYPMAGVLPGDARMT  113 (198)
T ss_pred             HHHHhhccCCCEeccccccceeeEEc
Confidence            99999875444678999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.80  E-value=4e-18  Score=137.47  Aligned_cols=152  Identities=22%  Similarity=0.311  Sum_probs=109.8

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |||.||.+. ||..++.++|+++|+++.+++++++++++|++|||||.  +..+.++.   .+.+.|++++++++|+|||
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~i~~~~~~~~PilgI   77 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS---PLRDVILEAARSGKPFLGI   77 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH---HHHHHHHHHHHcCCCEEEE
Confidence            899999985 57788999999999999999887778899999999963  33333332   4678899999999999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccCc---eeEEeeccc--cCCccccCCCCCcceeEeeecCceEEecCC
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS---QIQSFEAEL--SVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr---qv~sf~~~~--~~~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      |+|+|+|++++.+  +...+++|+++.++.++..+.   +...-...+  +-|-+   .+.+ .+...|.|++.+. .++
T Consensus        78 C~G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~---~~l~-~~~~~~~Hs~~~~-~~~  150 (200)
T PRK13143         78 CLGMQLLFESSEE--GGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLF---EGID-GEYVYFVHSYYAY-PDD  150 (200)
T ss_pred             CHHHHHHhhhhcc--CCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhh---ccCC-CcEEEEEeeeeeC-CCC
Confidence            9999999998753  456789999999998753321   111111011  10111   1222 3457889998775 556


Q ss_pred             CcEEEEecCC
Q 030035          153 DVDVLADYPV  162 (184)
Q Consensus       153 ~v~vLa~~~~  162 (184)
                      +..+||+.++
T Consensus       151 ~~~~la~~~~  160 (200)
T PRK13143        151 EDYVVATTDY  160 (200)
T ss_pred             cceEEEEEcC
Confidence            7899998775

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.78  E-value=4.4e-18  Score=136.86  Aligned_cols=151  Identities=26%  Similarity=0.323  Sum_probs=106.5

Q ss_pred             EEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035            3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA   79 (184)
Q Consensus         3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~   79 (184)
                      |+|+.+ .||+..+.++|++.|+++.+++++++++++|+||+||+ . ++.++.+.+. +....++++++.++||||||+
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~   79 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL   79 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence            466766 56889999999999999999998878899999999994 3 3456666653 333444888889999999999


Q ss_pred             HHHHHHHhhhcccCCCccccCcceeeeeecccC--ceeEEeeccccC--CccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--SQIQSFEAELSV--PALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G--rqv~sf~~~~~~--~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      |+|+|++++.+  ++..++||+++++|.|+.-+  .++.-.......  |-+   .+.|+.+.+.+-|+..+...+ + .
T Consensus        80 G~Qll~~~~~~--~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~---~~l~~~~~v~~~Hs~~v~~~~-~-~  152 (196)
T TIGR01855        80 GMQLLFERSEE--GGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLL---NGIDEGAYFYFVHSYYAVCEE-E-A  152 (196)
T ss_pred             HHHHhhhcccc--CCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHH---hCCCCCCEEEEECeeEecCCC-C-c
Confidence            99999999744  45788999999999987422  111111111000  101   234567889999998886544 4 3


Q ss_pred             EEEecC
Q 030035          156 VLADYP  161 (184)
Q Consensus       156 vLa~~~  161 (184)
                      ++|..+
T Consensus       153 ~~a~~~  158 (196)
T TIGR01855       153 VLAYAD  158 (196)
T ss_pred             EEEEEc
Confidence            555544

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK05665 amidotransferase; Provisional

Probab=99.78  E-value=5.7e-18  Score=140.41  Aligned_cols=148  Identities=13%  Similarity=0.131  Sum_probs=103.3

Q ss_pred             CEEEEEec----------CCCHHHHH-HHHHHCCC--eEEEEc-----CCCCCCCCCEEEEcCCchhHHHHHHhcCChHH
Q 030035            1 MVVGVLAL----------QGSFNEHI-AALKRLGV--KGVEIR-----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFP   62 (184)
Q Consensus         1 m~IgVl~~----------qG~~~~~~-~~L~~~G~--~v~~v~-----~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~   62 (184)
                      |||+||..          .|+|.+++ +.|.+.+.  ++..++     -+.+++++|++||+||....++...|...+.+
T Consensus         3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~   82 (240)
T PRK05665          3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKT   82 (240)
T ss_pred             eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHH
Confidence            78998842          26777744 55666664  344433     13456789999999997655543334334688


Q ss_pred             HHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeee
Q 030035           63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFI  142 (184)
Q Consensus        63 ~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~fi  142 (184)
                      +|++++++++|+||||+|+|+|+++++              ++|.|++.|.++.....++.- .-.|-...+..++....
T Consensus        83 ~i~~~~~~~~PilGIC~GhQlla~AlG--------------G~V~~~~~G~e~G~~~~~~~~-~~~~~~~~~~~~~~~~~  147 (240)
T PRK05665         83 YLLKLYERGDKLLGVCFGHQLLALLLG--------------GKAERASQGWGVGIHRYQLAA-HAPWMSPAVTELTLLIS  147 (240)
T ss_pred             HHHHHHhcCCCEEEEeHHHHHHHHHhC--------------CEEEeCCCCcccceEEEEecC-CCccccCCCCceEEEEE
Confidence            999999999999999999999999985              456666666555443332221 10122244567999999


Q ss_pred             cCceEEecCCCcEEEEecCCC
Q 030035          143 RAPAVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       143 rap~i~~~~~~v~vLa~~~~~  163 (184)
                      |.+.|.++|+++++||+.++-
T Consensus       148 H~D~V~~LP~ga~~La~s~~~  168 (240)
T PRK05665        148 HQDQVTALPEGATVIASSDFC  168 (240)
T ss_pred             cCCeeeeCCCCcEEEEeCCCC
Confidence            999999999999999998764

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.77  E-value=2.3e-18  Score=142.46  Aligned_cols=147  Identities=25%  Similarity=0.263  Sum_probs=101.1

Q ss_pred             EEEEEec----------CCCHHHHH-HHHHHCCCeEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHH
Q 030035            2 VVGVLAL----------QGSFNEHI-AALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALR   65 (184)
Q Consensus         2 ~IgVl~~----------qG~~~~~~-~~L~~~G~~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~   65 (184)
                      ||+||..          .|+|.++. +.++..|.++.+++..     .++.++|++||+||..+.++...+...+.++|+
T Consensus         3 ~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~   82 (237)
T PRK09065          3 PLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSERTADWLR   82 (237)
T ss_pred             cEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHHHHHHHHH
Confidence            4888842          36677765 3566678877766422     245689999999997655443333233678899


Q ss_pred             HHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccc--cCCCCCcceeEeeec
Q 030035           66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA--SQEGGPETFRGVFIR  143 (184)
Q Consensus        66 ~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~--~~~~~~~~~~a~fir  143 (184)
                      ++++.++||||||+|+|+|+++++.              +|.+|+.|.++...+..+...+..  +-.+.|+.|++.+.|
T Consensus        83 ~~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H  148 (237)
T PRK09065         83 QAAAAGMPLLGICYGHQLLAHALGG--------------EVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTH  148 (237)
T ss_pred             HHHHCCCCEEEEChhHHHHHHHcCC--------------ccccCCCCCccceEEEEEccccccChhhhcCCccCcEeeeh
Confidence            9999999999999999999999853              344555555544443332211100  002345678999999


Q ss_pred             CceEEecCCCcEEEEecCC
Q 030035          144 APAVLDVGPDVDVLADYPV  162 (184)
Q Consensus       144 ap~i~~~~~~v~vLa~~~~  162 (184)
                      .+.|.++|+++++||+.++
T Consensus       149 ~d~v~~lp~~~~~la~s~~  167 (237)
T PRK09065        149 LQSVLRLPPGAVVLARSAQ  167 (237)
T ss_pred             hhhhhhCCCCCEEEEcCCC
Confidence            9999999999999999875

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.75  E-value=1.2e-17  Score=134.06  Aligned_cols=105  Identities=25%  Similarity=0.388  Sum_probs=86.7

Q ss_pred             EEEEec--CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHH--HHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            3 VGVLAL--QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTM--ARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         3 IgVl~~--qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~--~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      |+|+.+  -||+.++.+++++.|+++++++..+++.++|+||||||.+...  ..+. ..++.+.|++++++|+|++|||
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC   79 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC   79 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence            345555  5899999999999999999999888888999999999975442  2222 3468899999999999999999


Q ss_pred             hHHHHHHHhhhcccCCC----ccccCcceeeeee
Q 030035           79 AGLIFLANKAVGQKLGG----QELVGGLDCTVHR  108 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~----~~~LG~ldv~v~r  108 (184)
                      +|+|+|++.+.+..+.+    .++||++|++++.
T Consensus        80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~  113 (194)
T cd01750          80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF  113 (194)
T ss_pred             HHHHHhhhhccCCCCcccCCCcccccccceEEEe
Confidence            99999999997643333    7899999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.74  E-value=2.5e-17  Score=130.84  Aligned_cols=148  Identities=23%  Similarity=0.268  Sum_probs=102.5

Q ss_pred             EEEEEecCCC--HHHHHHHHHHCC---CeEEEEcCC-----CCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHc
Q 030035            2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         2 ~IgVl~~qG~--~~~~~~~L~~~G---~~v~~v~~~-----~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~   70 (184)
                      ||.||...-.  ...+.+.|+++|   +++..++..     .+++++|++|||||..+. .+...+...+.+.|++++++
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~   80 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA   80 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence            4666644332  245667788888   577666422     347899999999997544 22222222367889999999


Q ss_pred             CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC--CCCCcceeEeeecCceEE
Q 030035           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ--EGGPETFRGVFIRAPAVL  148 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~--~~~~~~~~a~firap~i~  148 (184)
                      ++|++|||+|+|+|+.++.              ++|.|+..|.+....+..+.-......  .+.+..+.+.+.|.+.|.
T Consensus        81 ~~pilgiC~G~q~l~~~lG--------------G~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~  146 (188)
T cd01741          81 GKPVLGICLGHQLLARALG--------------GKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVV  146 (188)
T ss_pred             CCCEEEECccHHHHHHHhC--------------CEEecCCCcceeEEEEEEeccccccCchhhcCCCcceEEEEeccChh
Confidence            9999999999999999873              467777766666665554332111000  134567999999999999


Q ss_pred             ecCCCcEEEEecCCC
Q 030035          149 DVGPDVDVLADYPVP  163 (184)
Q Consensus       149 ~~~~~v~vLa~~~~~  163 (184)
                      ++|+++++||+.++-
T Consensus       147 ~lp~~~~~la~~~~~  161 (188)
T cd01741         147 ELPPGAVLLASSEAC  161 (188)
T ss_pred             hCCCCCEEeecCCCC
Confidence            999999999997653

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.72  E-value=5.5e-17  Score=131.00  Aligned_cols=145  Identities=23%  Similarity=0.304  Sum_probs=99.2

Q ss_pred             CEEEEEecCCCHHHHH-HHHHHCC-CeEEEEc---CCCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035            1 MVVGVLALQGSFNEHI-AALKRLG-VKGVEIR---KPDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~-~~L~~~G-~~v~~v~---~~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      ++|.|+.+.+++...+ +++++.| +...++.   +.+.+  .+.|++||+||..+.++.-.+.....++|+++...++|
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p   81 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP   81 (198)
T ss_pred             cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCC
Confidence            3799999999998866 8899999 5444443   22333  35699999999865543321222367788888777888


Q ss_pred             EEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcce-eEeeecCceEEe
Q 030035           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETF-RGVFIRAPAVLD  149 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~-~a~firap~i~~  149 (184)
                      |||||+|||+||++++.              +|.|+   .||...-+....-+ +-+   .+.|..+ .++.+|.+.+++
T Consensus        82 vLGIC~G~Ql~A~~lGg--------------~V~~~~~~E~G~~~v~~~~~~~-~l~---~gl~~~~~~v~~sH~D~v~~  143 (198)
T COG0518          82 VLGICLGHQLLAKALGG--------------KVERGPKREIGWTPVELTEGDD-PLF---AGLPDLFTTVFMSHGDTVVE  143 (198)
T ss_pred             EEEEChhHHHHHHHhCC--------------EEeccCCCccceEEEEEecCcc-ccc---cCCccccCccccchhCcccc
Confidence            99999999999999863              44443   33333222221000 011   2334455 589999999999


Q ss_pred             cCCCcEEEEecCCC
Q 030035          150 VGPDVDVLADYPVP  163 (184)
Q Consensus       150 ~~~~v~vLa~~~~~  163 (184)
                      +|++.++||+.++-
T Consensus       144 lP~g~~vlA~s~~c  157 (198)
T COG0518         144 LPEGAVVLASSETC  157 (198)
T ss_pred             CCCCCEEEecCCCC
Confidence            99999999997764

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=99.69  E-value=3.2e-16  Score=134.11  Aligned_cols=136  Identities=26%  Similarity=0.400  Sum_probs=108.7

Q ss_pred             EEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-C-chhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            4 GVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         4 gVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G-~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      -+|.+ .||+.++.++|+.+|+++..++++.|+.++|.||+|| | +...++.|.+ .++.+.|++++++|+|++|||.|
T Consensus         5 ~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgicvG   83 (541)
T KOG0623|consen    5 TLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGICVG   83 (541)
T ss_pred             EEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeehhh
Confidence            44544 6899999999999999999999999999999999999 6 5777877777 48999999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecc-ccCCccccCC----------CCCcceeEeeecCceEEe
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPALASQE----------GGPETFRGVFIRAPAVLD  149 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~-~~~~~~~~~~----------~~~~~~~a~firap~i~~  149 (184)
                      +|+|.....+  .+..++||++|..|.|         |..+ -.+||+|||+          +.-..-+..|.|+-.+.+
T Consensus        84 lQaLF~gSvE--~p~skGLgvipg~v~R---------FD~s~k~VPhIGWNsc~v~sd~effg~~p~~~~YFVHSyl~~e  152 (541)
T KOG0623|consen   84 LQALFDGSVE--NPPSKGLGVIPGIVGR---------FDASAKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFVHSYLNRE  152 (541)
T ss_pred             HHHHhccccc--CCCcCcccccccceec---------ccCCCCcCCcccccccccCCcccccccCCCceEEEEeeecccc
Confidence            9999988764  4578899999876654         5542 3479999993          111123667888865555


Q ss_pred             cC
Q 030035          150 VG  151 (184)
Q Consensus       150 ~~  151 (184)
                      .+
T Consensus       153 k~  154 (541)
T KOG0623|consen  153 KP  154 (541)
T ss_pred             cc
Confidence            43

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.69  E-value=8.9e-16  Score=122.75  Aligned_cols=140  Identities=20%  Similarity=0.291  Sum_probs=94.9

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEc----CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~----~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |||.|+...+.|.. +.++|+++|.++.+++    ++++++++|+|||.||.+.. ....   .+.++|++ +++++|+|
T Consensus         2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~~---~~~~~i~~-~~~~~PiL   76 (190)
T PRK06895          2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAYP---QLFAMLER-YHQHKSIL   76 (190)
T ss_pred             cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHhh---HHHHHHHH-hcCCCCEE
Confidence            79999998888766 5689999999998887    33456789999998886532 1111   24567776 56799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~  150 (184)
                      |||+|||+|+.+++..              |.|+   ..|. .......-.-+-+   .+.|+++.+.+-|...+.  ++
T Consensus        77 GIClG~Qlla~~~Gg~--------------V~~~~~~~~g~-~~~v~~~~~~~l~---~~~~~~~~v~~~Hs~~v~~~~l  138 (190)
T PRK06895         77 GVCLGHQTLCEFFGGE--------------LYNLNNVRHGQ-QRPLKVRSNSPLF---DGLPEEFNIGLYHSWAVSEENF  138 (190)
T ss_pred             EEcHHHHHHHHHhCCe--------------EeecCCCccCc-eEEEEECCCChhh---hcCCCceEEEcchhheeccccc
Confidence            9999999999998532              2221   1121 1111100000111   134567888999999986  57


Q ss_pred             CCCcEEEEecCCC
Q 030035          151 GPDVDVLADYPVP  163 (184)
Q Consensus       151 ~~~v~vLa~~~~~  163 (184)
                      |++..++|.+++.
T Consensus       139 p~~l~~~a~~~~~  151 (190)
T PRK06895        139 PTPLEITAVCDEN  151 (190)
T ss_pred             CCCeEEEEECCCC
Confidence            8889999988654

>PRK00758 GMP synthase subunit A; Validated

Probab=99.68  E-value=4.3e-16  Score=123.73  Aligned_cols=134  Identities=24%  Similarity=0.341  Sum_probs=91.1

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEc---CCCCCCCC-CEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIR---KPDQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~---~~~~l~~~-DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |.|+...+.|.. +.++|+++|+++.+++   +++++.++ |+||||||.+  +...   ..+.++|+   +.++|+|||
T Consensus         2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilGI   73 (184)
T PRK00758          2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILGI   73 (184)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEEE
Confidence            888888777665 5588999999988887   33456777 9999999973  2221   12344554   458999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCc
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV  154 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v  154 (184)
                      |+|||+|+.++.+              +|.|+.   +|.....+... + +-+   .+.|.++++.+.|++.+.++|++.
T Consensus        74 C~G~Q~L~~a~Gg--------------~v~~~~~~~~g~~~i~~~~~-~-~l~---~~~~~~~~~~~~H~~~v~~l~~~~  134 (184)
T PRK00758         74 CLGHQLIAKAFGG--------------EVGRGEYGEYALVEVEILDE-D-DIL---KGLPPEIRVWASHADEVKELPDGF  134 (184)
T ss_pred             eHHHHHHHHhcCc--------------EEecCCCceeeeEEEEEcCC-C-hhh---hCCCCCcEEEeehhhhhhhCCCCC
Confidence            9999999999853              232321   12111111110 0 111   134457899999999999999999


Q ss_pred             EEEEecCCC
Q 030035          155 DVLADYPVP  163 (184)
Q Consensus       155 ~vLa~~~~~  163 (184)
                      ++||+.++-
T Consensus       135 ~~la~~~~~  143 (184)
T PRK00758        135 EILARSDIC  143 (184)
T ss_pred             EEEEECCCC
Confidence            999997763

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.68  E-value=6.4e-17  Score=145.51  Aligned_cols=101  Identities=25%  Similarity=0.388  Sum_probs=74.2

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      ||||||++||.+.+ ++.+.....+++.++++++|.++|+||||||..+....+.  .++.+.|+++   |+||||||+|
T Consensus         1 m~iGvlal~sv~~a-l~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGICgG   74 (476)
T PRK06278          1 MEIGLLDIKGSLPC-FENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGICSG   74 (476)
T ss_pred             CEEEEEehhhHHHH-HHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEEcHH
Confidence            89999999999876 3334333345555778888999999999999644332232  2466666665   8999999999


Q ss_pred             HHHHHHhhhcccC----CCccccCcceeeee
Q 030035           81 LIFLANKAVGQKL----GGQELVGGLDCTVH  107 (184)
Q Consensus        81 ~QlLa~~~~~~~~----~~~~~LG~ldv~v~  107 (184)
                      ||||++.+.+...    +..++||++|++..
T Consensus        75 ~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~  105 (476)
T PRK06278         75 FQILSEKIDIGRKSPVPIIKEGLGLLDVEFS  105 (476)
T ss_pred             HHhcccccccCcccccccccCccceeeeeec
Confidence            9999999864211    23789999998743

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.68  E-value=6.9e-16  Score=127.87  Aligned_cols=144  Identities=17%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             CEEEEEecC--CCHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCC
Q 030035            1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~IgVl~~q--G~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      |||-|+.-.  ++...+.+.|++.|.++.+++.      +++++++|++||.||..+.++...+...+.++|+++++.++
T Consensus         8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~   87 (239)
T PRK06490          8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENK   87 (239)
T ss_pred             ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCC
Confidence            577776432  3455567889999998887752      33577899999999975443222222235788999999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCc-eeEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS-QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr-qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      |+||||+|+|+|+++++.              +|.++..|. +++..+..+.-.+. +-...  +....+.|... .++|
T Consensus        88 PvLGIC~G~Qlla~alGG--------------~V~~~~~G~~e~G~~~i~~~~~~~-~~~~~--~~~~~~~H~d~-~~lP  149 (239)
T PRK06490         88 PFLGICLGAQMLARHLGA--------------RVAPHPDGRVEIGYYPLRPTEAGR-ALMHW--PEMVYHWHREG-FDLP  149 (239)
T ss_pred             CEEEECHhHHHHHHHcCC--------------EeecCCCCCCccceEEeEECCCcc-cccCC--CCEEEEECCcc-ccCC
Confidence            999999999999999853              334433332 22222211111000 00011  23456678888 7899


Q ss_pred             CCcEEEEecCC
Q 030035          152 PDVDVLADYPV  162 (184)
Q Consensus       152 ~~v~vLa~~~~  162 (184)
                      ++.++||+.++
T Consensus       150 ~~~~~LA~s~~  160 (239)
T PRK06490        150 AGAELLATGDD  160 (239)
T ss_pred             CCCEEEEeCCC
Confidence            99999999765

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.68  E-value=1.5e-15  Score=136.14  Aligned_cols=117  Identities=21%  Similarity=0.336  Sum_probs=95.6

Q ss_pred             EEEEEe---cCCCHHHHHHHHHHCCCeEEEEcC--CCCCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~---~qG~~~~~~~~L~~~G~~v~~v~~--~~~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||||.-   +.-.|.++++.|++.|++++.++.  .+++.++|+||||||+++.+ ..+..+..+.+.|+++.++|+||+
T Consensus       247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~  326 (451)
T PRK01077        247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY  326 (451)
T ss_pred             eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence            688864   444678899999999999999985  35588999999999998654 556666788999999999999999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeee----cccCceeEEe
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR----NFFGSQIQSF  118 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r----n~~Grqv~sf  118 (184)
                      |||+|+|+|++.+.++.+...+++|+||+++..    +.+|.....+
T Consensus       327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~~~~~~~~g~~~~~~  373 (451)
T PRK01077        327 AECGGLMYLGESLEDADGERHPMVGLLPGEASMTKRLQALGYREAEA  373 (451)
T ss_pred             EEcHHHHHHHhhhcCCCCCeeecccccceeEEEcCCcccccceEEEe
Confidence            999999999999987655567999999998753    4666554444

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.67  E-value=9.8e-16  Score=120.91  Aligned_cols=136  Identities=21%  Similarity=0.320  Sum_probs=88.7

Q ss_pred             EEEEecC-CCHHHHHHHHHHCCCeEEEEcCCC-----CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         3 IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~-----~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      |.|+.+- ++...+.++|+++|+++++++...     ++.++|+||||||....++.-     .....++..+.++|+||
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-----~~~~~~~~~~~~~PilG   75 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-----APRVDPEIFELGVPVLG   75 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-----cchhhHHHHhcCCCEEE
Confidence            3555553 345567899999999998886432     467899999999975443211     11223444456999999


Q ss_pred             EchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCC
Q 030035           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~  153 (184)
                      ||+|||+|+.++..              ++.++   .+|..--.+...  -+-+   .+.|.++.+.+.|.+.|.++|++
T Consensus        76 IC~G~Qll~~~~gg--------------~v~~~~~~~~G~~~v~~~~~--~~l~---~~~~~~~~~~~~H~~~v~~l~~~  136 (181)
T cd01742          76 ICYGMQLIAKALGG--------------KVERGDKREYGKAEIEIDDS--SPLF---EGLPDEQTVWMSHGDEVVKLPEG  136 (181)
T ss_pred             EcHHHHHHHHhcCC--------------eEEeCCCCcceEEEEEecCC--Chhh---cCCCCceEEEcchhhhhhhcCCC
Confidence            99999999998753              22222   112111111110  0111   13345789999999999999999


Q ss_pred             cEEEEecCC
Q 030035          154 VDVLADYPV  162 (184)
Q Consensus       154 v~vLa~~~~  162 (184)
                      +++||+.++
T Consensus       137 ~~~la~~~~  145 (181)
T cd01742         137 FKVIASSDN  145 (181)
T ss_pred             cEEEEeCCC
Confidence            999998775

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.66  E-value=8.5e-16  Score=122.42  Aligned_cols=139  Identities=21%  Similarity=0.278  Sum_probs=92.5

Q ss_pred             EEEEec-CCCHHHHHHHHHHCCCeEEEEcC---CCCCCCCC--EEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRK---PDQLQNVS--SLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~---~~~l~~~D--glIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      |+|+.+ .++...+.++|++.|+++.+++.   ++++.++|  +||||||....+..     ...++++++++.++|+||
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-----~~~~~i~~~~~~~~PilG   75 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-----NAPRADEKIFELGVPVLG   75 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-----CchHHHHHHHhCCCCEEE
Confidence            355655 34566678999999999988753   24455444  99999997654321     235678888889999999


Q ss_pred             EchHHHHHHHhhhcccCC-CccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           77 TCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~-~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      ||+|||+|+.++++.-.. .....|+.++++.            .. . +-+   .+.++++...+.|...+.++|++++
T Consensus        76 IC~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~------------~~-~-~l~---~~~~~~~~~~~~H~~~v~~l~~~~~  138 (188)
T TIGR00888        76 ICYGMQLMAKQLGGEVGRAEKREYGKAELEIL------------DE-D-DLF---RGLPDESTVWMSHGDKVKELPEGFK  138 (188)
T ss_pred             ECHHHHHHHHhcCceEecCCCccceeEEEEEe------------cC-C-Hhh---cCCCCCcEEEeEccceeecCCCCCE
Confidence            999999999987532110 1112222222211            10 0 111   1234578888999999999999999


Q ss_pred             EEEecCCC
Q 030035          156 VLADYPVP  163 (184)
Q Consensus       156 vLa~~~~~  163 (184)
                      +||+.++.
T Consensus       139 vla~~~~~  146 (188)
T TIGR00888       139 VLATSDNC  146 (188)
T ss_pred             EEEECCCC
Confidence            99997753

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.66  E-value=4.5e-16  Score=129.17  Aligned_cols=135  Identities=26%  Similarity=0.313  Sum_probs=85.3

Q ss_pred             HHHHHHHHCCCe---EEEEc--C----CCCCCCCCEEEEcCCchhHH-------HHHHhc-CChHHHHHHHHHcCCcEEE
Q 030035           14 EHIAALKRLGVK---GVEIR--K----PDQLQNVSSLIIPGGESTTM-------ARLAEY-HNLFPALREFVKMGKPVWG   76 (184)
Q Consensus        14 ~~~~~L~~~G~~---v~~v~--~----~~~l~~~DglIipGG~~~~~-------~~l~~~-~~l~~~l~~~~~~g~PvlG   76 (184)
                      ++.+++++.|..   +.+++  .    +.+++++|++||+||..+.+       .++... ..+.+.++.+++.++||||
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLG   98 (242)
T PRK07567         19 EYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLG   98 (242)
T ss_pred             hHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            345667777754   44443  1    12567899999999964332       222211 0123455555688999999


Q ss_pred             EchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccc--cCCCCCcceeEeeecCceEEecCCCc
Q 030035           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA--SQEGGPETFRGVFIRAPAVLDVGPDV  154 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~--~~~~~~~~~~a~firap~i~~~~~~v  154 (184)
                      ||+|||+|+++++.              +|.+ ..|.+++.++..+...+..  +-.+.|..|.+.+.|.+.|.++|+++
T Consensus        99 IC~G~Qlla~a~GG--------------~V~~-~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~  163 (242)
T PRK07567         99 ACYGVGTLGHHQGG--------------VVDR-TYGEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGA  163 (242)
T ss_pred             EchhHHHHHHHcCC--------------EEec-CCCCcCccEEEEECCccCCChhhcCCCCceEEEeehhhhhhhCCCCC
Confidence            99999999999853              3334 3344444444333211110  00134567899999999999999999


Q ss_pred             EEEEecCCC
Q 030035          155 DVLADYPVP  163 (184)
Q Consensus       155 ~vLa~~~~~  163 (184)
                      ++||+.++-
T Consensus       164 ~vlA~s~~~  172 (242)
T PRK07567        164 VLLATSPTC  172 (242)
T ss_pred             EEEEeCCCC
Confidence            999998753

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.65  E-value=2e-15  Score=124.70  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHHH--HHhcCChHHHHHHHHHcCCcEEEEchHHH
Q 030035           11 SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMAR--LAEYHNLFPALREFVKMGKPVWGTCAGLI   82 (184)
Q Consensus        11 ~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~~--l~~~~~l~~~l~~~~~~g~PvlGIC~G~Q   82 (184)
                      +...+.+.|++.|.++.+++.      +.++.++|+|||+||....++.  ..+...+.++|+++++.++|++|||+|+|
T Consensus        15 ~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q   94 (234)
T PRK07053         15 DLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQ   94 (234)
T ss_pred             CChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHH
Confidence            455577889999998888753      2345689999999986433221  11111357889999999999999999999


Q ss_pred             HHHHhhhcccC-CCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecC
Q 030035           83 FLANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP  161 (184)
Q Consensus        83 lLa~~~~~~~~-~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~  161 (184)
                      +|+++++..-. +....+|+.+++++..  |+         .-|-.    +.+..++....|...+ ++|++.++||+.+
T Consensus        95 lla~alGg~V~~~~~~e~G~~~i~~t~~--g~---------~~pl~----~~~~~~~~~~~H~d~~-~lP~ga~~La~s~  158 (234)
T PRK07053         95 LIARALGARVYPGGQKEIGWAPLTLTDA--GR---------ASPLR----HLGAGTPVLHWHGDTF-DLPEGATLLASTP  158 (234)
T ss_pred             HHHHHcCCcEecCCCCeEeEEEEEEecc--cc---------CChhh----cCCCcceEEEEeCCEE-ecCCCCEEEEcCC
Confidence            99999864321 1223455554443321  10         00111    1224578888899987 7999999999977


Q ss_pred             C
Q 030035          162 V  162 (184)
Q Consensus       162 ~  162 (184)
                      .
T Consensus       159 ~  159 (234)
T PRK07053        159 A  159 (234)
T ss_pred             C
Confidence            5

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=99.65  E-value=1.4e-15  Score=136.28  Aligned_cols=106  Identities=22%  Similarity=0.365  Sum_probs=88.3

Q ss_pred             EEEEEec---CCCHHHHHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~---qG~~~~~~~~L~~~G~~v~~v~~~--~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||+|...   .-.|.++++.|++.|++++.++..  ++++++|+|+||||+++.+. .+..+.++.+.|++++++|+||+
T Consensus       246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~  325 (449)
T TIGR00379       246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY  325 (449)
T ss_pred             EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence            6888643   334578999999999999999874  56889999999999988764 45555678999999999999999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeee
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r  108 (184)
                      |||.|+|+|++.+.+.++ ..+++|+||+++..
T Consensus       326 g~CgG~~~L~~~i~~~~g-~~~~~Gllp~~t~~  357 (449)
T TIGR00379       326 GECGGLMYLSQSLDNFEG-QIFMVGMLPTAATM  357 (449)
T ss_pred             EEcHHHHHHHhhhcCCCC-ceeceeeeeeEEEE
Confidence            999999999999976443 34999999997764

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.64  E-value=9.4e-15  Score=119.21  Aligned_cols=139  Identities=22%  Similarity=0.281  Sum_probs=96.1

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----C----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g   71 (184)
                      |||.|+.....+.. +.+.|++.|+++.+++...    +    ++++|+|||+||..+.. +..   ...++++++.+++
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~-~~~---~~~~~i~~~~~~~   76 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE-RAG---ASIDMVRACAAAG   76 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh-hcc---hHHHHHHHHHhCC
Confidence            88988888776655 4578999999998876321    1    34799999999975432 211   2357889988889


Q ss_pred             CcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCce-eEEeeccccCCccccCCCCCcceeEeeecCceE
Q 030035           72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQ-IQSFEAELSVPALASQEGGPETFRGVFIRAPAV  147 (184)
Q Consensus        72 ~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grq-v~sf~~~~~~~~~~~~~~~~~~~~a~firap~i  147 (184)
                      +||||||+|||+|+.+++.              +|.++.   .|.. ......+   +.+   .+.+..+.+.+.|...+
T Consensus        77 ~PiLGIC~G~Qlla~a~GG--------------~v~~~~~~~~g~~~~v~~~~~---~~~---~~~~~~~~v~~~H~~~v  136 (214)
T PRK07765         77 TPLLGVCLGHQAIGVAFGA--------------TVDRAPELLHGKTSSVHHTGV---GVL---AGLPDPFTATRYHSLTI  136 (214)
T ss_pred             CCEEEEccCHHHHHHHhCC--------------EEeeCCCCccCceeEEEECCC---ccc---cCCCCccEEEecchheE
Confidence            9999999999999999863              333322   1221 1111111   011   13345789999999999


Q ss_pred             E--ecCCCcEEEEecCCC
Q 030035          148 L--DVGPDVDVLADYPVP  163 (184)
Q Consensus       148 ~--~~~~~v~vLa~~~~~  163 (184)
                      .  ++|++.+++|+.++-
T Consensus       137 ~~~~lp~~~~vla~s~~~  154 (214)
T PRK07765        137 LPETLPAELEVTARTDSG  154 (214)
T ss_pred             ecccCCCceEEEEEcCCC
Confidence            6  789999999998654

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.61  E-value=3.4e-15  Score=121.51  Aligned_cols=106  Identities=28%  Similarity=0.450  Sum_probs=82.1

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEcCCC-CCC-CCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCC
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~~~~-~l~-~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      |||+||.+||...+  ...+++++|.++..|.-.+ .+. ++|++++|||+|..  +  ..+.....+.+.++++++.|+
T Consensus         3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~   82 (231)
T COG0047           3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK   82 (231)
T ss_pred             ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence            79999999997655  6789999999998886433 355 79999999997632  1  223333347888999999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      |+||||.|+|+|.++            |+++.+..||.-.+-+...
T Consensus        83 ~vLGICNGfQiL~e~------------gLlPGal~~N~s~~F~cr~  116 (231)
T COG0047          83 PVLGICNGFQILSEA------------GLLPGALTRNESLRFECRW  116 (231)
T ss_pred             eEEEEcchhHHHHHc------------CcCCcceecCCCCceEEEE
Confidence            999999999999853            6788899999766544443

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.61  E-value=1.4e-14  Score=119.78  Aligned_cols=147  Identities=17%  Similarity=0.173  Sum_probs=91.2

Q ss_pred             CEEEEEecCC--CHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHH---HHHhc--CChHHHHHHH
Q 030035            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMA---RLAEY--HNLFPALREF   67 (184)
Q Consensus         1 m~IgVl~~qG--~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~---~l~~~--~~l~~~l~~~   67 (184)
                      |||.|+.-..  ....+...+++.|+++.+.+.      +.+++++|++|++||......   ...+.  ....++|+++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~   80 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA   80 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence            8877764221  223355677889988876541      124568999999999644221   11111  1235789999


Q ss_pred             HHcCCcEEEEchHHHHHHHhhhcccC-CCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCce
Q 030035           68 VKMGKPVWGTCAGLIFLANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA  146 (184)
Q Consensus        68 ~~~g~PvlGIC~G~QlLa~~~~~~~~-~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~  146 (184)
                      ++.++|++|||+|+|+|+++++..-. .....+|+.+++++..  |++         -|-+   .+.|+++.+...|...
T Consensus        81 ~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v~lt~~--g~~---------d~l~---~~~~~~~~v~~~H~d~  146 (235)
T PRK08250         81 IKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPITLTEA--GLK---------DPLL---SHFGSTLTVGHWHNDM  146 (235)
T ss_pred             HHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEEEEccc--ccc---------Cchh---hcCCCCcEEEEEecce
Confidence            99999999999999999999864221 1123444444333211  110         0111   1234567777778875


Q ss_pred             EEecCCCcEEEEecCC
Q 030035          147 VLDVGPDVDVLADYPV  162 (184)
Q Consensus       147 i~~~~~~v~vLa~~~~  162 (184)
                       .++|+++++||+.+.
T Consensus       147 -~~lP~~a~~LA~s~~  161 (235)
T PRK08250        147 -PGLTDQAKVLATSEG  161 (235)
T ss_pred             -ecCCCCCEEEECCCC
Confidence             478999999998865

>PRK00784 cobyric acid synthase; Provisional

Probab=99.61  E-value=6.1e-15  Score=133.36  Aligned_cols=106  Identities=24%  Similarity=0.348  Sum_probs=87.2

Q ss_pred             EEEEEecC--CCHHHHHHHHHH-CCCeEEEEcCCCCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            2 VVGVLALQ--GSFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         2 ~IgVl~~q--G~~~~~~~~L~~-~G~~v~~v~~~~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      ||+|..+.  -|| +..+.|++ .|++++++++.++++++|+|+||||+++... .+.++.++.+.|++++++|+|++||
T Consensus       253 ~i~v~~~~~a~~f-~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~  331 (488)
T PRK00784        253 RIAVIRLPRISNF-TDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGI  331 (488)
T ss_pred             EEEEEeCCCcCCc-cChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEE
Confidence            78887744  366 67788988 9999999998888999999999999866543 3445567899999999999999999


Q ss_pred             chHHHHHHHhhhcccCCC-----ccccCcceeeeee
Q 030035           78 CAGLIFLANKAVGQKLGG-----QELVGGLDCTVHR  108 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~-----~~~LG~ldv~v~r  108 (184)
                      |.|+|+|++.+.+..+..     .+++|++|+++..
T Consensus       332 C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~  367 (488)
T PRK00784        332 CGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF  367 (488)
T ss_pred             CHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe
Confidence            999999999996543322     4899999998864

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.60  E-value=9.9e-15  Score=132.69  Aligned_cols=138  Identities=20%  Similarity=0.333  Sum_probs=95.0

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCCCC--CEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~~~--DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      +|+||.+.++|.. +.++|+++|+...++..   .++++++  |+||||||..+.++.-     .....+...+.++|||
T Consensus         5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~-----~p~~~~~i~~~~~PvL   79 (511)
T PRK00074          5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG-----APRADPEIFELGVPVL   79 (511)
T ss_pred             EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCC-----CccccHHHHhCCCCEE
Confidence            6999999777776 45899999998877742   2345544  9999999987655321     1122344556799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      |||+|||+|++++++              +|.++   .||.+...+..+-  +-+   .+.+..+..++.|++.|.++|+
T Consensus        80 GIC~G~QlLa~~lGG--------------~V~~~~~~e~G~~~i~i~~~~--~Lf---~~l~~~~~v~~~H~d~V~~lp~  140 (511)
T PRK00074         80 GICYGMQLMAHQLGG--------------KVERAGKREYGRAELEVDNDS--PLF---KGLPEEQDVWMSHGDKVTELPE  140 (511)
T ss_pred             EECHHHHHHHHHhCC--------------eEEecCCcccceEEEEEcCCC--hhh---hcCCCceEEEEECCeEEEecCC
Confidence            999999999999853              22222   3443333222110  111   1234568999999999999999


Q ss_pred             CcEEEEecCCC
Q 030035          153 DVDVLADYPVP  163 (184)
Q Consensus       153 ~v~vLa~~~~~  163 (184)
                      ++++||+.++-
T Consensus       141 g~~vlA~s~~~  151 (511)
T PRK00074        141 GFKVIASTENC  151 (511)
T ss_pred             CcEEEEEeCCC
Confidence            99999998763

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=99.60  E-value=6.3e-15  Score=131.35  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=88.6

Q ss_pred             EEEEE---ecCCCHHHHHHHHHHCCCeEEEEcC--CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVL---ALQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl---~~qG~~~~~~~~L~~~G~~v~~v~~--~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||||-   ||.--|.+..+.|+++ ++++.++.  .++++++|+|+||||+++.+.......+..+.|++++++|+||+|
T Consensus       235 ~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~a  313 (433)
T PRK13896        235 TVAVARDAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLG  313 (433)
T ss_pred             eEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEE
Confidence            68874   4566789999999999 99999986  455889999999999987764433334566999999999999999


Q ss_pred             EchHHHHHHHhhhcccCCCccccCcceeeeee
Q 030035           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHR  108 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r  108 (184)
                      +|.|+|+|++.+.+.++...+++|++|+++..
T Consensus       314 eCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m  345 (433)
T PRK13896        314 ECGGLMALAESLTTTDGDTHEMAGVLPADVTM  345 (433)
T ss_pred             EehHHHHhhccccCCCCCEecccceeeEEEEE
Confidence            99999999999987655678999999998864

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.60  E-value=3e-14  Score=113.05  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=92.0

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |-|+.+-++|.. +.+.|+++|+++.+++..+      ++.++|++|+.||..+..+.     ...+.+++++.+++|+|
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl   75 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL   75 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence            456777888877 4588999999999886431      35789999998876543211     13445666667789999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCce-eEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQ-IQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grq-v~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      |||+|||+|+.+++.              +|.++   ..|.. ......+   +-+   .+.++.+.+.+.|...|...+
T Consensus        76 GIC~G~Qlla~~~Gg--------------~v~~~~~~~~g~~~~v~~~~~---~~~---~~~~~~~~~~~~H~~~v~~~~  135 (184)
T cd01743          76 GVCLGHQAIAEAFGG--------------KVVRAPEPMHGKTSEIHHDGS---GLF---KGLPQPFTVGRYHSLVVDPDP  135 (184)
T ss_pred             EECHhHHHHHHHhCC--------------EEEeCCCCCcCceeEEEECCC---ccc---cCCCCCcEEEeCcEEEEecCC
Confidence            999999999999853              22222   22211 1111111   111   134457899999999999988


Q ss_pred             CC--cEEEEecCCC
Q 030035          152 PD--VDVLADYPVP  163 (184)
Q Consensus       152 ~~--v~vLa~~~~~  163 (184)
                      .+  +++||+.++-
T Consensus       136 ~~~~~~~la~~~~~  149 (184)
T cd01743         136 LPDLLEVTASTEDG  149 (184)
T ss_pred             CCceEEEEEeCCCC
Confidence            77  9999997654

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.59  E-value=1.8e-14  Score=117.89  Aligned_cols=101  Identities=32%  Similarity=0.523  Sum_probs=78.7

Q ss_pred             CEEEEEecCCCHH--HHHHHHH-HCCCeEEEEc-CCCCCCCCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCC
Q 030035            1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIR-KPDQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~IgVl~~qG~~~--~~~~~L~-~~G~~v~~v~-~~~~l~~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      |||+||.++|...  +..++|+ ..|+++..+. ...+++++|+||||||.+..  .  ..+.....+.++|+++.++++
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~   80 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK   80 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence            8999999999774  4678999 8999987774 44578899999999996532  1  112222346788999999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCc
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS  113 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr  113 (184)
                      |++|||.|+|+|+++            |+++.++.+|.-++
T Consensus        81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~~~~  109 (219)
T PRK03619         81 PVLGICNGFQILTEA------------GLLPGALTRNASLK  109 (219)
T ss_pred             EEEEECHHHHHHHHc------------CCCCCeEEEcCCCc
Confidence            999999999999985            56677788886654

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.59  E-value=3.3e-14  Score=112.92  Aligned_cols=130  Identities=26%  Similarity=0.374  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035           11 SFNEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF   83 (184)
Q Consensus        11 ~~~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql   83 (184)
                      ...++.++|+++|+++.+++...       ++.++|++||+||.....+ +.   ...+.++++.+.++|+||||+|||+
T Consensus         9 ~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~---~~~~~i~~~~~~~~PilGIC~G~Q~   84 (192)
T PF00117_consen    9 FTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IE---GLIELIREARERKIPILGICLGHQI   84 (192)
T ss_dssp             THHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HH---HHHHHHHHHHHTTSEEEEETHHHHH
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-cc---ccccccccccccceEEEEEeehhhh
Confidence            55667899999999988886332       2678999999999766543 22   2567788888889999999999999


Q ss_pred             HHHhhhcccCCCccccCcceeeeeecc----cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe---cCCCcEE
Q 030035           84 LANKAVGQKLGGQELVGGLDCTVHRNF----FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD---VGPDVDV  156 (184)
Q Consensus        84 La~~~~~~~~~~~~~LG~ldv~v~rn~----~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~---~~~~v~v  156 (184)
                      |+.+++.              +|.++.    .|.+..-.... ..+.+   .+.|+.|.+.+.|...|..   +|++.++
T Consensus        85 la~~~G~--------------~v~~~~~~~~~g~~~~~~~~~-~~~~~---~~~~~~~~~~~~H~~~v~~~~~~p~~~~~  146 (192)
T PF00117_consen   85 LAHALGG--------------KVVPSPEKPHHGGNIPISETP-EDPLF---YGLPESFKAYQYHSDAVNPDDLLPEGFEV  146 (192)
T ss_dssp             HHHHTTH--------------EEEEEESEEEEEEEEEEEEEE-EHGGG---TTSTSEEEEEEEECEEEEEGHHHHTTEEE
T ss_pred             hHHhcCC--------------ccccccccccccccccccccc-ccccc---cccccccccccccceeeeccccccccccc
Confidence            9999864              222321    11111111100 01222   2455689999999999999   9999999


Q ss_pred             EEecCC
Q 030035          157 LADYPV  162 (184)
Q Consensus       157 La~~~~  162 (184)
                      ||+.++
T Consensus       147 la~s~~  152 (192)
T PF00117_consen  147 LASSSD  152 (192)
T ss_dssp             EEEETT
T ss_pred             cccccc
Confidence            999865

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.58  E-value=2.3e-14  Score=120.20  Aligned_cols=115  Identities=25%  Similarity=0.379  Sum_probs=79.3

Q ss_pred             CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCC------CCCCCCCEEEEcCCchhH--H-------HHHHhcCChHHH
Q 030035            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~------~~l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~   63 (184)
                      |||+||.++|..  .+..++|+++|+++.++...      .+++++|+|+||||++..  .       ..+..  .+.+.
T Consensus         4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~--~l~~~   81 (261)
T PRK01175          4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKA--VLRKD   81 (261)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHH--HHHHH
Confidence            689999999965  44689999999998877521      347789999999996421  1       12221  24478


Q ss_pred             HHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEee
Q 030035           64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE  119 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~  119 (184)
                      |++++++++|++|||.|+|+|+++..-+..+...  .--+++..+|.-++-+..+.
T Consensus        82 Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~--~~~~~~L~~N~s~~f~~~~~  135 (261)
T PRK01175         82 IEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIA--EKPEMALTVNESNRFECRPT  135 (261)
T ss_pred             HHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccc--cCCcceEeecCCCCeEEeee
Confidence            9999999999999999999999864321100000  01123788898887665543

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.58  E-value=1.3e-14  Score=119.38  Aligned_cols=87  Identities=29%  Similarity=0.534  Sum_probs=68.3

Q ss_pred             CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCC-CCCCCCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCCc
Q 030035            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~-~~l~~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      |||+||.+.|..  .+..++|+++|+++..+... .+++++|+||||||.+..  .  ..+.....+.++|+++.+.|+|
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p   80 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP   80 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence            899999999875  46789999999998877543 347899999999996421  1  1122222367889999999999


Q ss_pred             EEEEchHHHHHHHh
Q 030035           74 VWGTCAGLIFLANK   87 (184)
Q Consensus        74 vlGIC~G~QlLa~~   87 (184)
                      ++|||.|+|+|+++
T Consensus        81 vlgIC~G~QlLa~~   94 (227)
T TIGR01737        81 VLGICNGFQILVEA   94 (227)
T ss_pred             EEEECHHHHHHHHc
Confidence            99999999999985

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>CHL00101 trpG anthranilate synthase component 2

Probab=99.58  E-value=5.3e-14  Score=112.59  Aligned_cols=136  Identities=14%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.|+.+...|.. +.+.|+++|+++.+++..+    ++  .++|+|||.||.....+     .+....+.++++.++|+|
T Consensus         2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~PiL   76 (190)
T CHL00101          2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPIL   76 (190)
T ss_pred             EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcEE
Confidence            778888888877 5589999999998887431    23  46899999999765432     123344555667899999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~  150 (184)
                      |||+|||+|+.+++.              +|.|+.   .|.........  -+-+   .+.|..+.+.+.|...|.  ++
T Consensus        77 GIClG~Qlla~~~Gg--------------~V~~~~~~~~g~~~~~~~~~--~~l~---~~~~~~~~v~~~H~~~v~~~~l  137 (190)
T CHL00101         77 GVCLGHQSIGYLFGG--------------KIIKAPKPMHGKTSKIYHNH--DDLF---QGLPNPFTATRYHSLIIDPLNL  137 (190)
T ss_pred             EEchhHHHHHHHhCC--------------EEEECCCcccCceeeEeeCC--cHhh---ccCCCceEEEcchhheeecccC
Confidence            999999999998853              333332   22211111111  0111   134557899999999995  68


Q ss_pred             CCCcEEEEecCC
Q 030035          151 GPDVDVLADYPV  162 (184)
Q Consensus       151 ~~~v~vLa~~~~  162 (184)
                      |++++++|+.++
T Consensus       138 p~~~~vla~s~~  149 (190)
T CHL00101        138 PSPLEITAWTED  149 (190)
T ss_pred             CCceEEEEEcCC
Confidence            999999998765

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=99.55  E-value=1.3e-13  Score=107.46  Aligned_cols=112  Identities=18%  Similarity=0.265  Sum_probs=79.0

Q ss_pred             CCCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh-----cccCCCccccCcceeee
Q 030035           33 DQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV  106 (184)
Q Consensus        33 ~~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~-----~~~~~~~~~LG~ldv~v  106 (184)
                      +.++++|+|+||||.++.. ..+.++.++.+.|++++++|+||+|+|.|+|+|++.+.     +..+...+++|+||+++
T Consensus         3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t   82 (158)
T PF07685_consen    3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT   82 (158)
T ss_pred             CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence            4578999999999987664 34555668999999999999999999999999999998     43334689999999998


Q ss_pred             eecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035          107 HRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus       107 ~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      .... -+.+...........      ....+++.=+|.=.+...+
T Consensus        83 ~~~~-~~~~g~~~~~~~~~~------~g~~v~G~E~H~~~~~~~~  120 (158)
T PF07685_consen   83 TMEK-EKALGYVEARVDNGK------KGEEVRGHEFHYGRTTGIP  120 (158)
T ss_pred             EEcC-cEEEEEEEEEECCCC------CCCEEEEEEEeCeEEECCC
Confidence            7654 323333322222111      1135777777754444433

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.55  E-value=2.7e-13  Score=108.37  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=91.8

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.|+...+.|.. +++.|++.|.++.+++..+    +++  ++|+|||.||+....+.    ....+.++. .+.++|+|
T Consensus         2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~PiL   76 (191)
T PRK06774          2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPIL   76 (191)
T ss_pred             EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCEE
Confidence            777788888877 6689999999999987542    232  57999999998665422    123455554 46789999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceE--Eec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV--LDV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i--~~~  150 (184)
                      |||+|||+|+.+++.              +|.++.   +|.........  -+-+   .+.+.++++.+-|...+  .++
T Consensus        77 GIC~G~Qlla~~~GG--------------~v~~~~~~~~G~~~~~~~~~--~~lf---~~l~~~~~v~~~Hs~~v~~~~l  137 (191)
T PRK06774         77 GVCLGHQALGQAFGA--------------RVVRARQVMHGKTSAICHSG--QGVF---RGLNQPLTVTRYHSLVIAADSL  137 (191)
T ss_pred             EECHHHHHHHHHhCC--------------EEEeCCcceecceEEEEecC--chhh---cCCCCCcEEEEeCcceeeccCC
Confidence            999999999999753              333321   23211111110  0111   13345689999999999  478


Q ss_pred             CCCcEEEEecCC
Q 030035          151 GPDVDVLADYPV  162 (184)
Q Consensus       151 ~~~v~vLa~~~~  162 (184)
                      |++++++|+.++
T Consensus       138 p~~~~vlA~s~~  149 (191)
T PRK06774        138 PGCFELTAWSER  149 (191)
T ss_pred             CCCeEEEEEeCC
Confidence            999999998764

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.54  E-value=2.5e-13  Score=108.59  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.++...+.|.. +.+.|++.|+++.+++..+    ++  .++|+|||.||++...+.    ....+.++. .+.++|+|
T Consensus         2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~PiL   76 (187)
T PRK08007          2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPIL   76 (187)
T ss_pred             EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCEE
Confidence            667777777776 5688999999999987542    22  258999999998665321    123455555 46789999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccC-CccccCCCCCcceeEeeecCceEE--ecCC
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPAVL--DVGP  152 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~-~~~~~~~~~~~~~~a~firap~i~--~~~~  152 (184)
                      |||+|+|+|+.+++.              +|.|...+.+-........- +-+   .+.+.++.+.+.|...|.  ++|+
T Consensus        77 GIClG~Q~la~a~Gg--------------~v~~~~~~~~g~~~~v~~~~~~l~---~~~~~~~~v~~~H~~~v~~~~lp~  139 (187)
T PRK08007         77 GVCLGHQAMAQAFGG--------------KVVRAAKVMHGKTSPITHNGEGVF---RGLANPLTVTRYHSLVVEPDSLPA  139 (187)
T ss_pred             EECHHHHHHHHHcCC--------------EEEeCCCcccCCceEEEECCCCcc---cCCCCCcEEEEcchhEEccCCCCC
Confidence            999999999999853              33333222110000000000 111   233457899999999995  7899


Q ss_pred             CcEEEEecCCC
Q 030035          153 DVDVLADYPVP  163 (184)
Q Consensus       153 ~v~vLa~~~~~  163 (184)
                      +.+++|+.++-
T Consensus       140 ~~~v~a~~~~~  150 (187)
T PRK08007        140 CFEVTAWSETR  150 (187)
T ss_pred             CeEEEEEeCCC
Confidence            99999987653

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.51  E-value=7.8e-13  Score=105.73  Aligned_cols=136  Identities=19%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCC----CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP----DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~----~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.++...+.|.. +.+.|+++|+++.+++..    +++.  ++|+|||.||..+..+. .   ...+.++++ +.++|+|
T Consensus         2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~PvL   76 (188)
T TIGR00566         2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPIL   76 (188)
T ss_pred             EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCEE
Confidence            677777778866 678999999999887632    2232  47999999997654221 1   125667776 6789999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceE--Eec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV--LDV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i--~~~  150 (184)
                      |||+|||+|+.+++.              +|.++   .+|+ .......-+ +-+   .+.+++|.+...|...|  ..+
T Consensus        77 GIC~G~Qll~~~~GG--------------~v~~~~~~~~g~-~~~v~~~~~-~~~---~~l~~~~~v~~~H~~~v~~~~l  137 (188)
T TIGR00566        77 GVCLGHQAMGQAFGG--------------DVVRANTVMHGK-TSEIEHNGA-GIF---RGLFNPLTATRYHSLVVEPETL  137 (188)
T ss_pred             EECHHHHHHHHHcCC--------------EEeeCCCccccc-eEEEEECCC-ccc---cCCCCCcEEEEcccceEecccC
Confidence            999999999999853              33332   2331 111111000 011   12334688999999998  478


Q ss_pred             CCCcEEEEecCC
Q 030035          151 GPDVDVLADYPV  162 (184)
Q Consensus       151 ~~~v~vLa~~~~  162 (184)
                      |++++++|+.++
T Consensus       138 ~~~~~v~a~s~~  149 (188)
T TIGR00566       138 PTCFPVTAWEEE  149 (188)
T ss_pred             CCceEEEEEcCC
Confidence            999999998764

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PLN02347 GMP synthetase

Probab=99.51  E-value=1.8e-13  Score=124.90  Aligned_cols=141  Identities=17%  Similarity=0.229  Sum_probs=92.2

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCC--CCCEEEEcCCchhHHHHHHhcCChHH-HHHHHHHcCCcE
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFP-ALREFVKMGKPV   74 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~--~~DglIipGG~~~~~~~l~~~~~l~~-~l~~~~~~g~Pv   74 (184)
                      ||.|+.+...|.. +.++++++|+.+.+++.   .+++.  ++|+||||||..+.++.  ....+.+ .++.+.+.++|+
T Consensus        12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~--~~p~~~~~i~~~~~~~~iPI   89 (536)
T PLN02347         12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVE--GAPTVPEGFFDYCRERGVPV   89 (536)
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCccccc--CCchhhHHHHHHHHhcCCcE
Confidence            6999999877765 56899999999888843   33343  68999999997554321  0001222 233333568999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcc--eeEeeecCceEEe
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPET--FRGVFIRAPAVLD  149 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~--~~a~firap~i~~  149 (184)
                      ||||+|||+|++++++              +|.|+   .+|..--.+...  -+-+   .+.|..  +.++|.|...+.+
T Consensus        90 LGIClG~QlLa~alGG--------------~V~~~~~~e~G~~~v~i~~~--~~Lf---~~l~~~~~~~v~~~Hsd~V~~  150 (536)
T PLN02347         90 LGICYGMQLIVQKLGG--------------EVKPGEKQEYGRMEIRVVCG--SQLF---GDLPSGETQTVWMSHGDEAVK  150 (536)
T ss_pred             EEECHHHHHHHHHcCC--------------EEEecCCcccceEEEEEcCC--Chhh---hcCCCCceEEEEEEEEEEeee
Confidence            9999999999999753              23221   234222111111  0111   122333  7899999999999


Q ss_pred             cCCCcEEEEecCCC
Q 030035          150 VGPDVDVLADYPVP  163 (184)
Q Consensus       150 ~~~~v~vLa~~~~~  163 (184)
                      +|++.+++|+.++-
T Consensus       151 lP~g~~vlA~s~~~  164 (536)
T PLN02347        151 LPEGFEVVAKSVQG  164 (536)
T ss_pred             CCCCCEEEEEeCCC
Confidence            99999999988753

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.51  E-value=6e-13  Score=107.16  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=92.4

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.|+...+.|.. +.+.|+++|.++.+++..+    ++  .++|+|||.||+....+.    ....+.++.+ +.++|+|
T Consensus         2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~~-~~~~PvL   76 (195)
T PRK07649          2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRYF-AGKIPIF   76 (195)
T ss_pred             EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHHh-cCCCCEE
Confidence            677777888877 6689999999999987542    11  368999999998655321    1234555543 5689999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~  150 (184)
                      |||+|||+|+++++.              +|.|+   .+|+... .... .-|-+   .+.|.+|.+.+-|...+.  ++
T Consensus        77 GIClG~Qlla~~lGg--------------~V~~~~~~~~G~~~~-i~~~-~~~lf---~~~~~~~~v~~~H~~~v~~~~l  137 (195)
T PRK07649         77 GVCLGHQSIAQVFGG--------------EVVRAERLMHGKTSL-MHHD-GKTIF---SDIPNPFTATRYHSLIVKKETL  137 (195)
T ss_pred             EEcHHHHHHHHHcCC--------------EEeeCCCcccCCeEE-EEEC-CChhh---cCCCCCCEEEEechheEecccC
Confidence            999999999999853              33332   2333211 1110 00111   244567899999999984  68


Q ss_pred             CCCcEEEEecCC
Q 030035          151 GPDVDVLADYPV  162 (184)
Q Consensus       151 ~~~v~vLa~~~~  162 (184)
                      |++++++|+.++
T Consensus       138 p~~~~~~a~s~~  149 (195)
T PRK07649        138 PDCLEVTSWTEE  149 (195)
T ss_pred             CCCeEEEEEcCC
Confidence            999999998764

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.51  E-value=6.8e-13  Score=105.92  Aligned_cols=136  Identities=20%  Similarity=0.237  Sum_probs=89.2

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.|+.....|.. +.+.|+++|+++.+++...    ++  .++|+|||.||..+..+.    ....++|++ +..++|+|
T Consensus         2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~----~~~~~~l~~-~~~~~PvL   76 (189)
T PRK05670          2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEA----GISLELIRE-FAGKVPIL   76 (189)
T ss_pred             EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHc----chHHHHHHH-hcCCCCEE
Confidence            788888888766 6699999999998886431    12  248999999987554321    113455655 45689999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe--c
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD--V  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~--~  150 (184)
                      |||+|||+|+.+++.              +|.++.   .|.. ...... .-+-+   .+.+.++.+.+.|...|..  +
T Consensus        77 GIClG~Qlla~alGg--------------~v~~~~~~~~g~~-~~v~~~-~~~l~---~~~~~~~~v~~~H~~~v~~~~l  137 (189)
T PRK05670         77 GVCLGHQAIGEAFGG--------------KVVRAKEIMHGKT-SPIEHD-GSGIF---AGLPNPFTVTRYHSLVVDRESL  137 (189)
T ss_pred             EECHHHHHHHHHhCC--------------EEEecCCcccCce-eEEEeC-CCchh---ccCCCCcEEEcchhheeccccC
Confidence            999999999999853              222221   1210 000000 00111   1234568889999999954  8


Q ss_pred             CCCcEEEEecCC
Q 030035          151 GPDVDVLADYPV  162 (184)
Q Consensus       151 ~~~v~vLa~~~~  162 (184)
                      |+++++||+.++
T Consensus       138 p~~~~~la~s~~  149 (189)
T PRK05670        138 PDCLEVTAWTDD  149 (189)
T ss_pred             CCceEEEEEeCC
Confidence            999999999854

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.49  E-value=2.2e-13  Score=122.94  Aligned_cols=105  Identities=25%  Similarity=0.354  Sum_probs=80.6

Q ss_pred             EEEEEecCC--CHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~qG--~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ||+|..+.-  ||. -.+.|++.- .+.+++.+++|.++|+|+||||+++... .+.++.++.+.|++++++|+||+|||
T Consensus       249 ~Iav~~~~~~~nf~-~~~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiC  326 (475)
T TIGR00313       249 RIGVVRLPRISNFT-DFEPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGIC  326 (475)
T ss_pred             EEEEEcCCcccCcc-ChHHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEc
Confidence            688877543  444 456777662 5556666677889999999999876543 23344678999999999999999999


Q ss_pred             hHHHHHHHhhhcccC-----CCccccCcceeeeee
Q 030035           79 AGLIFLANKAVGQKL-----GGQELVGGLDCTVHR  108 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~-----~~~~~LG~ldv~v~r  108 (184)
                      .|||+|++.+.+..+     +..+++|+||+++..
T Consensus       327 gG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~  361 (475)
T TIGR00313       327 GGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF  361 (475)
T ss_pred             HHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE
Confidence            999999999876432     256899999998865

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.48  E-value=1.2e-12  Score=103.56  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=64.2

Q ss_pred             EEEEecCCCHHHHHHHHHHCCCeEEEEcCCCC-----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~-----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |+|+.+.+.| .+.++|++.|+++.+++...+     ..++|+|||+||..+.. +..   ...+.++++.+.++|+|||
T Consensus         1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~-~~~---~~~~~~~~~~~~~~PvlGI   75 (178)
T cd01744           1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPA-LLD---EAIKTVRKLLGKKIPIFGI   75 (178)
T ss_pred             CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChh-HhH---HHHHHHHHHHhCCCCEEEE
Confidence            5788887776 578999999999998864322     24799999999975432 111   2467788888889999999


Q ss_pred             chHHHHHHHhhhc
Q 030035           78 CAGLIFLANKAVG   90 (184)
Q Consensus        78 C~G~QlLa~~~~~   90 (184)
                      |+|+|+|+.+++.
T Consensus        76 C~G~Q~l~~~~Gg   88 (178)
T cd01744          76 CLGHQLLALALGA   88 (178)
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999999853

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.47  E-value=9.4e-13  Score=123.70  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=95.0

Q ss_pred             CEEEEEecCC-CHHHHHHHHHHCCCeEEEEcCC--CCC---CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQG-SFNEHIAALKRLGVKGVEIRKP--DQL---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG-~~~~~~~~L~~~G~~v~~v~~~--~~l---~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      +||.|+.... +...+.+.|++.|+++.+++..  +++   .++|+|||.||.+...+     .+..+.|+++++.++|+
T Consensus       517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv  591 (717)
T TIGR01815       517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV  591 (717)
T ss_pred             CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence            4788888754 4566789999999999888643  222   46899999887655432     23567888888899999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCc--eeEEeeccccCCccccCCCCCcceeEeeecCceE--
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGS--QIQSFEAELSVPALASQEGGPETFRGVFIRAPAV--  147 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Gr--qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i--  147 (184)
                      ||||+|||+|+++++.              +|.+..   .|.  .+.-....   +-+   .+.|..+.+.+-|+.++  
T Consensus       592 LGICLG~QlLa~a~GG--------------~V~~~~~p~~G~~~~V~~~~~~---~Lf---~~lp~~~~v~~~HS~~~~~  651 (717)
T TIGR01815       592 FGVCLGLQGMVEAFGG--------------ALDVLPEPVHGKASRIRVLGPD---ALF---AGLPERLTVGRYHSLFARR  651 (717)
T ss_pred             EEECHHHHHHhhhhCC--------------EEEECCCCeeCcceEEEECCCC---hhh---hcCCCCCEEEEECCCCccc
Confidence            9999999999999742              333321   221  11100001   111   23456789999999766  


Q ss_pred             EecCCCcEEEEecCCC
Q 030035          148 LDVGPDVDVLADYPVP  163 (184)
Q Consensus       148 ~~~~~~v~vLa~~~~~  163 (184)
                      ..+|++++++|+.++.
T Consensus       652 ~~LP~~~~vlA~s~d~  667 (717)
T TIGR01815       652 DRLPAELTVTAESADG  667 (717)
T ss_pred             ccCCCCeEEEEEeCCC
Confidence            5689999999988663

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.45  E-value=4.2e-12  Score=103.26  Aligned_cols=154  Identities=16%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             EEEEEecCCCH-HHHHHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSF-NEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~-~~~~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||.++.....| ..+.+.|+++|+++.+++..   +++  .++|+|||.||++...+.-    ...+.++.+. .++|||
T Consensus         3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~----~~~~li~~~~-~~~PiL   77 (208)
T PRK05637          3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG----NMMALIDRTL-GQIPLL   77 (208)
T ss_pred             EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh----HHHHHHHHHh-CCCCEE
Confidence            68888875555 44779999999999988753   333  2679999988876553321    1234555443 579999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCcccc-CCCCCcceeEeeecCceEEecCCCc
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPDV  154 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~-~~~~~~~~~a~firap~i~~~~~~v  154 (184)
                      |||+|+|+|+.+++..-......-|... .+..+.-|++-.-|. .+....... ..-...++.++..|...|.++|++.
T Consensus        78 GIClG~Qlla~alGG~V~~~~~~~G~~~-~i~~~~~~~~~~l~~-~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~  155 (208)
T PRK05637         78 GICLGFQALLEHHGGKVEPCGPVHGTTD-NMILTDAGVQSPVFA-GLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGM  155 (208)
T ss_pred             EEcHHHHHHHHHcCCeeccCCcccceEE-EeEECCCCCCCcccC-CCCcccccccccccCCceEEEEechhhhhcCCCCe
Confidence            9999999999998542111001111111 011111111111111 111000000 0000135889999999999999999


Q ss_pred             EEEEecCC
Q 030035          155 DVLADYPV  162 (184)
Q Consensus       155 ~vLa~~~~  162 (184)
                      ++||+.++
T Consensus       156 ~vlA~s~~  163 (208)
T PRK05637        156 ESLGTCSS  163 (208)
T ss_pred             EEEEEecC
Confidence            99998764

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.43  E-value=3.8e-13  Score=107.59  Aligned_cols=76  Identities=25%  Similarity=0.374  Sum_probs=55.8

Q ss_pred             HHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHH--------H----HhcC-ChHHHHHHHHHcCCc
Q 030035           14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMAR--------L----AEYH-NLFPALREFVKMGKP   73 (184)
Q Consensus        14 ~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~--------l----~~~~-~l~~~l~~~~~~g~P   73 (184)
                      ++.++|+++|+.++++....       .+.++|+||||||.+.....        +    ..+. ...+.|+++++.++|
T Consensus        23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P  102 (189)
T cd01745          23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP  102 (189)
T ss_pred             HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence            46788999999998887542       24679999999996432110        0    0100 125678888888999


Q ss_pred             EEEEchHHHHHHHhhh
Q 030035           74 VWGTCAGLIFLANKAV   89 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~   89 (184)
                      +||||+|||+|+.+++
T Consensus       103 ilgiC~G~Q~l~~~~G  118 (189)
T cd01745         103 ILGICRGMQLLNVALG  118 (189)
T ss_pred             EEEEcchHHHHHHHhC
Confidence            9999999999999885

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PLN02335 anthranilate synthase

Probab=99.43  E-value=5.1e-12  Score=103.66  Aligned_cols=141  Identities=19%  Similarity=0.213  Sum_probs=89.6

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC-C---C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~-~---l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      +||.|+...+.|.. +.+.|+++|+++.+++... +   +  .++|+|||.||+....+.    ....+.+++ ...++|
T Consensus        19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~----~~~~~~~~~-~~~~~P   93 (222)
T PLN02335         19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS----GISLQTVLE-LGPLVP   93 (222)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc----cchHHHHHH-hCCCCC
Confidence            36888887777766 5589999999999987531 1   2  257999999997655321    012344443 345799


Q ss_pred             EEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCce----e-EEeeccccCCccccCCCCCcceeEeeecCceEE
Q 030035           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQ----I-QSFEAELSVPALASQEGGPETFRGVFIRAPAVL  148 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grq----v-~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~  148 (184)
                      +||||+|+|+|+.++++              ++.|..++..    . ..+.....-+-+   ++.|..+.+...|...|.
T Consensus        94 iLGIClG~QlLa~alGg--------------~v~~~~~~~~~G~~~~v~~~~~~~~~Lf---~~l~~~~~v~~~H~~~v~  156 (222)
T PLN02335         94 LFGVCMGLQCIGEAFGG--------------KIVRSPFGVMHGKSSPVHYDEKGEEGLF---SGLPNPFTAGRYHSLVIE  156 (222)
T ss_pred             EEEecHHHHHHHHHhCC--------------EEEeCCCccccCceeeeEECCCCCChhh---hCCCCCCEEEechhheEe
Confidence            99999999999998753              3333332211    1 001100000111   234567899999999986


Q ss_pred             --ecCCC-cEEEEecCCC
Q 030035          149 --DVGPD-VDVLADYPVP  163 (184)
Q Consensus       149 --~~~~~-v~vLa~~~~~  163 (184)
                        +++++ .+++|+.++.
T Consensus       157 ~~~lp~~~~~v~a~~~~~  174 (222)
T PLN02335        157 KDTFPSDELEVTAWTEDG  174 (222)
T ss_pred             cccCCCCceEEEEEcCCC
Confidence              46766 8999987653

>PRK13566 anthranilate synthase; Provisional

Probab=99.41  E-value=5.2e-12  Score=118.80  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=93.8

Q ss_pred             CEEEEEecCCCH-HHHHHHHHHCCCeEEEEcCCCC-----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQGSF-NEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~-~~~~~~L~~~G~~v~~v~~~~~-----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      |||.|+.+...+ ..+.+.|++.|+++.+++...+     ..++|+|||.||.....+     .++.+.|+++.++++||
T Consensus       527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI  601 (720)
T PRK13566        527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI  601 (720)
T ss_pred             CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence            688888887544 4467899999999999875421     247899999887654321     24678899988899999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCc--eeEEeeccccCCccccCCCCCcceeEeeecCceEEe
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGS--QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD  149 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Gr--qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~  149 (184)
                      ||||+|||+|+.++++.              +.+..   .|.  .+.-.+..   +-+   .+.|..|.+.+-|..++..
T Consensus       602 LGIClG~QlLa~alGG~--------------V~~~~~~~~G~~~~V~v~~~~---~Lf---~~lp~~~~v~~~Hs~~v~~  661 (720)
T PRK13566        602 FGVCLGLQAIVEAFGGE--------------LGQLAYPMHGKPSRIRVRGPG---RLF---SGLPEEFTVGRYHSLFADP  661 (720)
T ss_pred             EEEehhHHHHHHHcCCE--------------EEECCCCccCCceEEEECCCC---chh---hcCCCCCEEEEecceeEee
Confidence            99999999999998532              11111   110  11100000   101   1334568888899887754


Q ss_pred             --cCCCcEEEEecCC
Q 030035          150 --VGPDVDVLADYPV  162 (184)
Q Consensus       150 --~~~~v~vLa~~~~  162 (184)
                        +|++++++|..++
T Consensus       662 ~~Lp~~~~vlA~s~d  676 (720)
T PRK13566        662 ETLPDELLVTAETED  676 (720)
T ss_pred             ccCCCceEEEEEeCC
Confidence              8999999999876

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.41  E-value=8.2e-13  Score=109.33  Aligned_cols=85  Identities=27%  Similarity=0.483  Sum_probs=65.1

Q ss_pred             EEEEecCCCH--HHHHHHHHHCCCeEEEEcCCC------CCCCCCEEEEcCCchhH--HH--HHHhcCC-hHHHHHHHHH
Q 030035            3 VGVLALQGSF--NEHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTT--MA--RLAEYHN-LFPALREFVK   69 (184)
Q Consensus         3 IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~~------~l~~~DglIipGG~~~~--~~--~l~~~~~-l~~~l~~~~~   69 (184)
                      |+||.++|..  .++.++|++.|+++.++...+      +++++|+||||||++..  +.  ....... +.+.|+++.+
T Consensus         1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~   80 (238)
T cd01740           1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE   80 (238)
T ss_pred             CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence            5899999964  468899999999998886322      46789999999996422  11  1011112 6788999999


Q ss_pred             cCCcEEEEchHHHHHHHh
Q 030035           70 MGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        70 ~g~PvlGIC~G~QlLa~~   87 (184)
                      +++|++|||.|+|+|++.
T Consensus        81 ~g~pvlGIC~G~QlL~~~   98 (238)
T cd01740          81 RGGLVLGICNGFQILVEL   98 (238)
T ss_pred             CCCeEEEECcHHHHHHHc
Confidence            999999999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.40  E-value=1.3e-11  Score=98.86  Aligned_cols=135  Identities=17%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-CCC-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP-DQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-~~l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |.++...+.|.. +.+.|+++|+++.+++.. .++     .+.|++|+.||.....+.    ....+.++. ++.++|+|
T Consensus         2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~PiL   76 (193)
T PRK08857          2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPIL   76 (193)
T ss_pred             EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCEE
Confidence            777777777766 678999999999988743 221     247899999987554321    123455655 56799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV  150 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~  150 (184)
                      |||+|+|+|+.+++.              +|.++.   +|... ..... .-+-+   .+.+.++.+..-|...|.  ++
T Consensus        77 GIClG~Qlia~a~Gg--------------~v~~~~~~~~G~~~-~~~~~-~~~l~---~~~~~~~~v~~~H~~~v~~~~l  137 (193)
T PRK08857         77 GVCLGHQAIAQVFGG--------------QVVRARQVMHGKTS-PIRHT-GRSVF---KGLNNPLTVTRYHSLVVKNDTL  137 (193)
T ss_pred             EEcHHHHHHHHHhCC--------------EEEeCCCceeCceE-EEEEC-CCccc---ccCCCccEEEEccEEEEEcCCC
Confidence            999999999999853              222221   23211 01000 00111   123456888888999886  78


Q ss_pred             CCCcEEEEecC
Q 030035          151 GPDVDVLADYP  161 (184)
Q Consensus       151 ~~~v~vLa~~~  161 (184)
                      |++++++|+.+
T Consensus       138 p~~~~v~a~s~  148 (193)
T PRK08857        138 PECFELTAWTE  148 (193)
T ss_pred             CCCeEEEEEec
Confidence            99999999875

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.39  E-value=3.7e-13  Score=107.94  Aligned_cols=82  Identities=20%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             CCCHHHHH-HHHHHCCCeEEEEc-------CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            9 QGSFNEHI-AALKRLGVKGVEIR-------KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         9 qG~~~~~~-~~L~~~G~~v~~v~-------~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      -|+|..+. ..|.+-|......+       ..+||+++||++|+|+..++.+...|...+.+.+++.....++|+|||+|
T Consensus        23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFG  102 (245)
T KOG3179|consen   23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFG  102 (245)
T ss_pred             hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEecc
Confidence            36777754 56777777655443       23678899999999985443322222223677888887778999999999


Q ss_pred             HHHHHHhhhc
Q 030035           81 LIFLANKAVG   90 (184)
Q Consensus        81 ~QlLa~~~~~   90 (184)
                      ||++|++.+.
T Consensus       103 HQiiara~Gg  112 (245)
T KOG3179|consen  103 HQIIARAKGG  112 (245)
T ss_pred             HHHHHHhhCC
Confidence            9999999764

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.37  E-value=1.6e-11  Score=112.11  Aligned_cols=137  Identities=17%  Similarity=0.189  Sum_probs=92.1

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-------CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP-------DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-------~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~   70 (184)
                      |||.|+...+.|.. +.+.|++.|.++.++++.       +++.  ++|+|||.||++...+.     +....+.+....
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~   76 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG   76 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence            48999999999988 558899999999888742       1222  46799999997665321     223333444456


Q ss_pred             CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceE
Q 030035           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV  147 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i  147 (184)
                      ++||||||+|||+|+.+++.              +|.|+.   +| ++......-. +-+   .+.|.+++++.-|+..+
T Consensus        77 ~iPILGIClG~QlLa~a~GG--------------~V~~~~~~~~G-~~~~i~~~~~-~lf---~~~~~~~~v~~~Hs~~v  137 (531)
T PRK09522         77 KLPIIGICLGHQAIVEAYGG--------------YVGQAGEILHG-KASSIEHDGQ-AMF---AGLTNPLPVARYHSLVG  137 (531)
T ss_pred             CCCEEEEcHHHHHHHHhcCC--------------EEEeCCceeee-eEEEEeecCC-ccc---cCCCCCcEEEEehheec
Confidence            89999999999999999853              333321   12 1111111000 111   13455789999999999


Q ss_pred             EecCCCcEEEEecC
Q 030035          148 LDVGPDVDVLADYP  161 (184)
Q Consensus       148 ~~~~~~v~vLa~~~  161 (184)
                      .++|++.+++|+.+
T Consensus       138 ~~lP~~l~vlA~sd  151 (531)
T PRK09522        138 SNIPAGLTINAHFN  151 (531)
T ss_pred             ccCCCCcEEEEecC
Confidence            99999999999743

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.37  E-value=1.7e-12  Score=108.81  Aligned_cols=116  Identities=28%  Similarity=0.357  Sum_probs=71.6

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc------CCCCCCCCCEEEEcCCchhH-------H--HHHHhcCChHHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGESTT-------M--ARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~------~~~~l~~~DglIipGG~~~~-------~--~~l~~~~~l~~~   63 (184)
                      .||+||.+.|...+  ...+|+..|+++..|.      ...+|+++|+|+||||+|..       +  ..+..+..+.+.
T Consensus         2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~   81 (259)
T PF13507_consen    2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA   81 (259)
T ss_dssp             -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence            38999999997544  7789999999998874      23468899999999997532       1  122222467899


Q ss_pred             HHHHHHc-CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035           64 LREFVKM-GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        64 l~~~~~~-g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      |++++++ |+++||||.|+|+|.+.-.-+. + ...-.--.++..+|.-++-...+
T Consensus        82 i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~-~-~~~~~~~~~~L~~N~s~~fe~rw  135 (259)
T PF13507_consen   82 IREFLERPGGFVLGICNGFQILVELGLLPG-G-EIKDSEQSPALTPNASGRFESRW  135 (259)
T ss_dssp             HHHHHHCTT-EEEEECHHHHHHCCCCCSTT--------TT--EEE--TTSS-EEEE
T ss_pred             HHHHHhcCCCeEEEEchHhHHHHHhCcCCC-c-cccccCCCcEEcCCCCCCeEEEE
Confidence            9999998 9999999999999987532110 0 00012234488899888755554

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.34  E-value=3.2e-11  Score=96.30  Aligned_cols=140  Identities=19%  Similarity=0.258  Sum_probs=89.9

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-CC---C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP-DQ---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-~~---l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      |+|.++.-...|.. +++.|++.|.++.++++. .+   +  .++|+|||+-|+++.-    +..-+.+.|+++ ...+|
T Consensus         2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~----d~G~~~~~i~~~-~~~~P   76 (191)
T COG0512           2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPK----DAGISLELIRRF-AGRIP   76 (191)
T ss_pred             ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChH----HcchHHHHHHHh-cCCCC
Confidence            46888877777755 668999999999988765 11   2  3589999955443331    111256778887 56799


Q ss_pred             EEEEchHHHHHHHhhhcccCCCccccCcceeeeee--cccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe--
Q 030035           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR--NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD--  149 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r--n~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~--  149 (184)
                      +||||+|+|.|+++++.              +|.|  ++.=+++.....+ . ..+-  .++|++|.+.==|+=.+.+  
T Consensus        77 iLGVCLGHQai~~~fGg--------------~V~~a~~~~HGK~s~i~h~-g-~~iF--~glp~~f~v~RYHSLvv~~~~  138 (191)
T COG0512          77 ILGVCLGHQAIAEAFGG--------------KVVRAKEPMHGKTSIITHD-G-SGLF--AGLPNPFTVTRYHSLVVDPET  138 (191)
T ss_pred             EEEECccHHHHHHHhCC--------------EEEecCCCcCCeeeeeecC-C-cccc--cCCCCCCEEEeeEEEEecCCC
Confidence            99999999999999863              2222  1221222211100 0 0110  2566778776556666776  


Q ss_pred             cCCCcEEEEecCCC
Q 030035          150 VGPDVDVLADYPVP  163 (184)
Q Consensus       150 ~~~~v~vLa~~~~~  163 (184)
                      +|+..+|.|+.++.
T Consensus       139 lP~~l~vtA~~~d~  152 (191)
T COG0512         139 LPEELEVTAESEDG  152 (191)
T ss_pred             CCCceEEEEEeCCC
Confidence            88999999998663

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.34  E-value=2.5e-11  Score=106.07  Aligned_cols=84  Identities=18%  Similarity=0.324  Sum_probs=65.2

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCC---CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~---~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||.|+.+ |--.++++.|+++|+++++++..   +++.  ++|+|||+||..+.. .+.   ...+.++++.+.++|+||
T Consensus       179 ~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~-~~~---~~~~~i~~~~~~~~PilG  253 (360)
T PRK12564        179 KVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPA-ALD---YAIEMIRELLEKKIPIFG  253 (360)
T ss_pred             EEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChH-HHH---HHHHHHHHHHHcCCeEEE
Confidence            6888887 65667889999999999998743   2232  689999999875432 121   246788888888999999


Q ss_pred             EchHHHHHHHhhhc
Q 030035           77 TCAGLIFLANKAVG   90 (184)
Q Consensus        77 IC~G~QlLa~~~~~   90 (184)
                      ||+|+|+|+.+++.
T Consensus       254 IClG~QlLa~a~Gg  267 (360)
T PRK12564        254 ICLGHQLLALALGA  267 (360)
T ss_pred             ECHHHHHHHHHhCC
Confidence            99999999999864

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.33  E-value=4.2e-12  Score=112.08  Aligned_cols=106  Identities=23%  Similarity=0.411  Sum_probs=91.4

Q ss_pred             EEEEE---ecCCCHHHHHHHHHHCCCeEEEEcCCC--CCC-CCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcE
Q 030035            2 VVGVL---ALQGSFNEHIAALKRLGVKGVEIRKPD--QLQ-NVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         2 ~IgVl---~~qG~~~~~~~~L~~~G~~v~~v~~~~--~l~-~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      ||+|-   +|.--|.+..+.|+++|++++.+++..  +++ ++|+|.||||++..+ +.|..+..+.+.|+++.++|+||
T Consensus       247 rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~pi  326 (451)
T COG1797         247 RIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPI  326 (451)
T ss_pred             eEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCce
Confidence            78874   344568899999999999999998654  476 699999999998875 56777767899999999999999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeee
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH  107 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~  107 (184)
                      +|-|.|+..|++.+++.++...+++|+++..+.
T Consensus       327 yaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~  359 (451)
T COG1797         327 YAECGGLMYLGESLEDADGDTYEMVGVLPGSTR  359 (451)
T ss_pred             EEecccceeehhheeccCCceeeeeeeeccchh
Confidence            999999999999999877778899999998774

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.31  E-value=1e-11  Score=101.51  Aligned_cols=147  Identities=22%  Similarity=0.289  Sum_probs=81.7

Q ss_pred             HHHHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCchhH------------HHHHHhcCCh--HHHHHHHHHcC
Q 030035           13 NEHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT------------MARLAEYHNL--FPALREFVKMG   71 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~~~------------~~~l~~~~~l--~~~l~~~~~~g   71 (184)
                      .+++++++++|+.++.+...   ++    ++.+||||||||..+.            ........+.  ...++.+.+++
T Consensus        27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~  106 (217)
T PF07722_consen   27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG  106 (217)
T ss_dssp             HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence            45789999999999988644   11    4689999999996211            0111111112  33567777789


Q ss_pred             CcEEEEchHHHHHHHhhhcccCCCcc-ccCcceeeeeecccCceeEEeeccccCC-ccccCCCCCcceeEeeecCceEEe
Q 030035           72 KPVWGTCAGLIFLANKAVGQKLGGQE-LVGGLDCTVHRNFFGSQIQSFEAELSVP-ALASQEGGPETFRGVFIRAPAVLD  149 (184)
Q Consensus        72 ~PvlGIC~G~QlLa~~~~~~~~~~~~-~LG~ldv~v~rn~~Grqv~sf~~~~~~~-~~~~~~~~~~~~~a~firap~i~~  149 (184)
                      +||||||.|||+|+-++++.-..... ..+..+..-..+.+..+.-.+...-.+. -++     .+.+..-..|-..|..
T Consensus       107 ~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~-----~~~~~vns~Hhq~v~~  181 (217)
T PF07722_consen  107 KPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILG-----SEEIEVNSFHHQAVKP  181 (217)
T ss_dssp             --EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSH-----HCTEEEEEEECEEECC
T ss_pred             CCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhC-----cCcceeecchhhhhhc
Confidence            99999999999999988643211111 1222222222222333333333211111 111     1356777889999999


Q ss_pred             cCCCcEEEEecCCCC
Q 030035          150 VGPDVDVLADYPVPS  164 (184)
Q Consensus       150 ~~~~v~vLa~~~~~~  164 (184)
                      ++++.+|+|...+..
T Consensus       182 l~~~l~v~A~s~Dg~  196 (217)
T PF07722_consen  182 LGEGLRVTARSPDGV  196 (217)
T ss_dssp             HHCCEEEEEEECTSS
T ss_pred             cCCCceEEEEecCCc
Confidence            999999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=99.25  E-value=4.1e-11  Score=107.28  Aligned_cols=106  Identities=23%  Similarity=0.372  Sum_probs=83.2

Q ss_pred             EEEEEecCC--CHHHHHHHHHH-CCCeEEEEcCCCCCCCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQG--SFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG--~~~~~~~~L~~-~G~~v~~v~~~~~l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      +|+|+.+.-  ||.+. +.|+. .++++.+++..++|.++|.+||||+.++.  +..+++ .++.+.|+++++.+.+|+|
T Consensus       253 ~Iav~~lp~isNFtD~-dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG  330 (486)
T COG1492         253 RIAVIRLPRISNFTDF-DPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG  330 (486)
T ss_pred             EEEEecCCCccccccc-hhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence            577776642  55553 34554 48999999999999999999999986543  445554 5888899999998999999


Q ss_pred             EchHHHHHHHhhhcccC-----CCccccCcceeeeeec
Q 030035           77 TCAGLIFLANKAVGQKL-----GGQELVGGLDCTVHRN  109 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~-----~~~~~LG~ldv~v~rn  109 (184)
                      ||.|||||++.+.+..+     +..+|||++|+++.-.
T Consensus       331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~~  368 (486)
T COG1492         331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCFA  368 (486)
T ss_pred             EcchHHhhhhhhcCcccccCcccccCCccceEEEEEec
Confidence            99999999999987431     2467999999987654

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.25  E-value=1.7e-10  Score=102.11  Aligned_cols=83  Identities=17%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||.++. -|+-..+.+.|+++|+++++++...   ++  .++|+|||+||+++.. .+.+   ..+.+++++ .++|+||
T Consensus       242 ~IvviD-~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~~---~ie~ik~l~-~~iPIlG  315 (415)
T PLN02771        242 HVIAYD-FGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVPY---AVETVKELL-GKVPVFG  315 (415)
T ss_pred             EEEEEC-CChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-HhhH---HHHHHHHHH-hCCCEEE
Confidence            455544 4788888999999999999986432   22  2689999999975542 2222   456677765 4799999


Q ss_pred             EchHHHHHHHhhhc
Q 030035           77 TCAGLIFLANKAVG   90 (184)
Q Consensus        77 IC~G~QlLa~~~~~   90 (184)
                      ||+|||+|+.+++.
T Consensus       316 ICLGhQlLa~AlGG  329 (415)
T PLN02771        316 ICMGHQLLGQALGG  329 (415)
T ss_pred             EcHHHHHHHHhcCC
Confidence            99999999999853

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.22  E-value=1.1e-10  Score=97.63  Aligned_cols=143  Identities=17%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             HHHHHHHHCCCeEEEEcCC-C---C----CCCCCEEEEcCCchhH----H---------HHHHhcCChHHHHHHHHHcCC
Q 030035           14 EHIAALKRLGVKGVEIRKP-D---Q----LQNVSSLIIPGGESTT----M---------ARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus        14 ~~~~~L~~~G~~v~~v~~~-~---~----l~~~DglIipGG~~~~----~---------~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      .+++++.++|..++.+... .   .    ++.+|||||+||..+.    +         ...++ .-..++|+.+++.++
T Consensus        30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD-~~e~~li~~a~~~~~  108 (254)
T PRK11366         30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD-LLSMALINAALERRI  108 (254)
T ss_pred             HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH-HHHHHHHHHHHHCCC
Confidence            3668888899887777632 1   1    2569999999984221    1         01111 012467888888999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeee--------ccc-CceeEEeeccccCCccccCCCCCcceeEeeec
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR--------NFF-GSQIQSFEAELSVPALASQEGGPETFRGVFIR  143 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r--------n~~-Grqv~sf~~~~~~~~~~~~~~~~~~~~a~fir  143 (184)
                      ||||||+|+|+|+.++++.-.....  ..-.....+        ..+ +++.-.+...-.+..+-   +.+..+.+--.|
T Consensus       109 PILGICrG~Qllnva~GGtl~~~~~--~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~---~~~~~~~Vns~H  183 (254)
T PRK11366        109 PIFAICRGLQELVVATGGSLHRKLC--EQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALL---PECSNFWVNSLH  183 (254)
T ss_pred             CEEEECHhHHHHHHHhCCeEeeccc--ccccccccccCCccccccccCCceEEEECCCCcHHHhc---CCCceEEeehHH
Confidence            9999999999999998642111100  000000000        001 11111111110000010   011245555558


Q ss_pred             CceEEecCCCcEEEEecCC
Q 030035          144 APAVLDVGPDVDVLADYPV  162 (184)
Q Consensus       144 ap~i~~~~~~v~vLa~~~~  162 (184)
                      .+.|.++|++.+|+|+.++
T Consensus       184 ~q~V~~l~~gl~v~A~s~d  202 (254)
T PRK11366        184 GQGAKVVSPRLRVEARSPD  202 (254)
T ss_pred             HHHHhhcccceEEEEEcCC
Confidence            8899999999999998766

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=99.22  E-value=6.9e-11  Score=115.97  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--CC-------------CCCCCCCEEEEcCCchh--HH-------HHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGEST--TM-------ARL   54 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~~-------------~~l~~~DglIipGG~~~--~~-------~~l   54 (184)
                      +||+||.++|...+  ...+|+++|+++..+.  +.             .+|+++|+|++|||+|.  ..       ..+
T Consensus       978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857       978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence            58999999997765  6689999998877664  21             34789999999999742  11       123


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeec
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA  120 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~  120 (184)
                      ..+..+.+.++++++.++++||||.|+|+|.+...-+ ++......--..+..||.-+|.+.++..
T Consensus      1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP-~~~~~~~~~~~p~l~~N~s~rf~~r~v~ 1122 (1239)
T TIGR01857      1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLP-YGNIEAANETSPTLTYNDINRHVSKIVR 1122 (1239)
T ss_pred             hhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCc-CccccccccCCceeeecCCCCeEEeeeE
Confidence            3334578899999999999999999999999863221 0000000001237889988887776643

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK06186 hypothetical protein; Validated

Probab=99.19  E-value=4.3e-11  Score=98.54  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             CEEEEEe----cCCCHHHHHHHHHHCC----C--eEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHH
Q 030035            1 MVVGVLA----LQGSFNEHIAALKRLG----V--KGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALR   65 (184)
Q Consensus         1 m~IgVl~----~qG~~~~~~~~L~~~G----~--~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~   65 (184)
                      .|||++.    ++..|.++.++|+.++    .  ++.++...     +.|+++|||++|||++..  ..   .+....++
T Consensus         2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r--g~---~Gki~ai~   76 (229)
T PRK06186          2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR--ND---DGALTAIR   76 (229)
T ss_pred             cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc--cH---hHHHHHHH
Confidence            3677764    5678999999998864    3  44455421     247789999999998642  11   25677899


Q ss_pred             HHHHcCCcEEEEchHHHHHHHhh
Q 030035           66 EFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        66 ~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+.+.++|+||||+|||++.-+.
T Consensus        77 ~Are~~iP~LGIClGmQ~avIe~   99 (229)
T PRK06186         77 FARENGIPFLGTCGGFQHALLEY   99 (229)
T ss_pred             HHHHcCCCeEeechhhHHHHHHH
Confidence            99999999999999999865443

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=99.18  E-value=4.7e-11  Score=96.90  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHCCCeEEEEc--CCCC--CCCCCEEEEcCCchhHHHHHHhc-CChHHHHHHHHHcCCcEEEEchHHHH
Q 030035            9 QGSFNEHIAALKRLGVKGVEIR--KPDQ--LQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIF   83 (184)
Q Consensus         9 qG~~~~~~~~L~~~G~~v~~v~--~~~~--l~~~DglIipGG~~~~~~~l~~~-~~l~~~l~~~~~~g~PvlGIC~G~Ql   83 (184)
                      .||..-+.++.+++|+.+.++.  -.+.  .+++|.+++.||.....+-..+. ....+.|+++++.|+|++.||+|+|+
T Consensus        20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql   99 (250)
T COG3442          20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL   99 (250)
T ss_pred             CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh
Confidence            4677767788999998776653  2222  35899999999976554333332 23467899999999999999999999


Q ss_pred             HHHhhhcccCCCccccCcceeeee
Q 030035           84 LANKAVGQKLGGQELVGGLDCTVH  107 (184)
Q Consensus        84 La~~~~~~~~~~~~~LG~ldv~v~  107 (184)
                      |++.++...+....+||+||....
T Consensus       100 LG~yY~~a~G~ri~GlGiLd~~T~  123 (250)
T COG3442         100 LGQYYETASGTRIDGLGILDHYTE  123 (250)
T ss_pred             ccceeecCCCcEeecccceeeeec
Confidence            999998776778899999998665

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.18  E-value=2.7e-10  Score=100.20  Aligned_cols=85  Identities=14%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      +||.|+.+ |--..+.+.|+++|+++.+++...   ++.  ++|+|||+||+.... .+.   .+.+.++++++.++|+|
T Consensus       193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~-~~~---~~i~~i~~~~~~~~Pil  267 (382)
T CHL00197        193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPS-AIH---YGIKTVKKLLKYNIPIF  267 (382)
T ss_pred             CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChh-HHH---HHHHHHHHHHhCCCCEE
Confidence            47888888 444458899999999999986432   232  689999999875432 111   14566777777789999


Q ss_pred             EEchHHHHHHHhhhc
Q 030035           76 GTCAGLIFLANKAVG   90 (184)
Q Consensus        76 GIC~G~QlLa~~~~~   90 (184)
                      |||+|||+|+.+++.
T Consensus       268 GIClGhQlLa~a~Gg  282 (382)
T CHL00197        268 GICMGHQILSLALEA  282 (382)
T ss_pred             EEcHHHHHHHHHhCC
Confidence            999999999999864

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.15  E-value=3.8e-10  Score=98.48  Aligned_cols=83  Identities=16%  Similarity=0.350  Sum_probs=63.1

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      +|.|+.+ |-...+.+.|++.|+++.+++..   +++  .++|+|||+||+.+..+. .   ...+.+++++++ +|+||
T Consensus       169 ~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~-~---~~~~~i~~~~~~-~PvlG  242 (354)
T PRK12838        169 HVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKEL-Q---PYLPEIKKLISS-YPILG  242 (354)
T ss_pred             EEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHh-H---HHHHHHHHHhcC-CCEEE
Confidence            6777777 66677889999999999988643   223  268999999997543221 1   245678888766 99999


Q ss_pred             EchHHHHHHHhhhc
Q 030035           77 TCAGLIFLANKAVG   90 (184)
Q Consensus        77 IC~G~QlLa~~~~~   90 (184)
                      ||+|||+|+.+++.
T Consensus       243 IClG~QlLa~a~Gg  256 (354)
T PRK12838        243 ICLGHQLIALALGA  256 (354)
T ss_pred             ECHHHHHHHHHhCC
Confidence            99999999999864

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=99.15  E-value=1.3e-10  Score=94.54  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             EEEEEecCCC-----HHHHHHHHHHC-CCeEEEEc-----C-CCCCCCCCEEEEcCCc-hhHHHHHHhcCChHHHHHHHH
Q 030035            2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGE-STTMARLAEYHNLFPALREFV   68 (184)
Q Consensus         2 ~IgVl~~qG~-----~~~~~~~L~~~-G~~v~~v~-----~-~~~l~~~DglIipGG~-~~~~~~l~~~~~l~~~l~~~~   68 (184)
                      ||+++.....     +.+..++++++ |+++..+.     . .+.|.++|+|++|||. ...+..+.+ .++.+.|++++
T Consensus        33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~  111 (212)
T cd03146          33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL  111 (212)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence            5666654332     23355788999 99988776     2 3457899999999984 334556665 48889999998


Q ss_pred             HcCCcEEEEchHHHHHHHhhhc-----ccC-CCccccCcceeeeee
Q 030035           69 KMGKPVWGTCAGLIFLANKAVG-----QKL-GGQELVGGLDCTVHR  108 (184)
Q Consensus        69 ~~g~PvlGIC~G~QlLa~~~~~-----~~~-~~~~~LG~ldv~v~r  108 (184)
                      ++|+|++|||+|+|+|++.+..     .+. ....+||++|..+.-
T Consensus       112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~p  157 (212)
T cd03146         112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICP  157 (212)
T ss_pred             HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccC
Confidence            8999999999999999996321     111 246799999876543

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.14  E-value=2.4e-10  Score=99.84  Aligned_cols=83  Identities=17%  Similarity=0.324  Sum_probs=63.3

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||.|+.+ |--.++.+.|+++|+++++++...   ++.  .+|+|||+||..+.. .+.   ...+.++++++ ++|+||
T Consensus       175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG  248 (358)
T TIGR01368       175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG  248 (358)
T ss_pred             EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence            6888887 666678899999999999886432   232  359999999975431 222   24677888876 899999


Q ss_pred             EchHHHHHHHhhhc
Q 030035           77 TCAGLIFLANKAVG   90 (184)
Q Consensus        77 IC~G~QlLa~~~~~   90 (184)
                      ||+|||+|+.+++.
T Consensus       249 IClG~QlLa~a~Gg  262 (358)
T TIGR01368       249 ICLGHQLLALAFGA  262 (358)
T ss_pred             ECHHHHHHHHHhCC
Confidence            99999999999864

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.13  E-value=7.9e-10  Score=101.24  Aligned_cols=136  Identities=15%  Similarity=0.162  Sum_probs=86.3

Q ss_pred             EEEEecCCCHHH-HHHHHHHCCCe-EEEEcCC----CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            3 VGVLALQGSFNE-HIAALKRLGVK-GVEIRKP----DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         3 IgVl~~qG~~~~-~~~~L~~~G~~-v~~v~~~----~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      |-|+.-.+.|.. +.+.|++.|.+ +.++.+.    +++  .++|+|||+||+....+.    ....+.++. +..++|+
T Consensus         2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~----~~~~~li~~-~~~~~Pv   76 (534)
T PRK14607          2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA----GISVEVIRH-FSGKVPI   76 (534)
T ss_pred             EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC----CccHHHHHH-hhcCCCE
Confidence            666666677765 56889999986 6665432    122  257999999998655321    113455655 4678999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCcee-EEeeccccCCccccCCCCCcceeEeeecCceEE--
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQI-QSFEAELSVPALASQEGGPETFRGVFIRAPAVL--  148 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv-~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--  148 (184)
                      ||||+|||+|+.+++.              +|.++.   .|... .....+   +-+   ++.|..+.+.+.|...|.  
T Consensus        77 LGIClG~QlLa~a~Gg--------------~V~~~~~~~~G~~~~v~~~~~---~lf---~~~~~~~~v~~~Hs~~v~~~  136 (534)
T PRK14607         77 LGVCLGHQAIGYAFGG--------------KIVHAKRILHGKTSPIDHNGK---GLF---RGIPNPTVATRYHSLVVEEA  136 (534)
T ss_pred             EEEcHHHHHHHHHcCC--------------eEecCCccccCCceeEEECCC---cch---hcCCCCcEEeeccchheecc
Confidence            9999999999999853              222221   12110 001000   111   133456788889999885  


Q ss_pred             ecCCCcEEEEecCCC
Q 030035          149 DVGPDVDVLADYPVP  163 (184)
Q Consensus       149 ~~~~~v~vLa~~~~~  163 (184)
                      ++|++.+++|+.++-
T Consensus       137 ~lp~~~~vlA~s~d~  151 (534)
T PRK14607        137 SLPECLEVTAKSDDG  151 (534)
T ss_pred             cCCCCeEEEEEcCCC
Confidence            689999999987653

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=99.09  E-value=1.2e-09  Score=90.42  Aligned_cols=106  Identities=19%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             EEEEEecC---CCHHH----HHHHHHHCCCeEEEEcCCCC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035            2 VVGVLALQ---GSFNE----HIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         2 ~IgVl~~q---G~~~~----~~~~L~~~G~~v~~v~~~~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~   70 (184)
                      ||.++-..   +++.+    ..++++++|+++..++..++    |.++|+|+++||....+.+..+..++.+.|++++++
T Consensus        33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~  112 (233)
T PRK05282         33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKN  112 (233)
T ss_pred             eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHC
Confidence            56665443   33333    45678889999998887766    789999999999887776666667899999999999


Q ss_pred             CCcEEEEchHHHHHHHhhhccc------CCCccccCcceeeee
Q 030035           71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVH  107 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~------~~~~~~LG~ldv~v~  107 (184)
                      |+|++|+|+|+.+++..+....      .....+||+++..+.
T Consensus       113 G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~  155 (233)
T PRK05282        113 GTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQIN  155 (233)
T ss_pred             CCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeec
Confidence            9999999999999999775311      113568999997664

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.09  E-value=2.2e-10  Score=96.76  Aligned_cols=77  Identities=23%  Similarity=0.437  Sum_probs=50.1

Q ss_pred             HHHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHHHcC--CcEEEEchHHH
Q 030035           14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMG--KPVWGTCAGLI   82 (184)
Q Consensus        14 ~~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~~~g--~PvlGIC~G~Q   82 (184)
                      +++++++++|+.++.+..+   ++    ++.+|||++|||..+.  ...+.....+.+...+..++|  +|+||||+|+|
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q  103 (273)
T cd01747          24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFE  103 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH
Confidence            4778899999997766532   22    5689999999986322  111111111333333333334  89999999999


Q ss_pred             HHHHhhhc
Q 030035           83 FLANKAVG   90 (184)
Q Consensus        83 lLa~~~~~   90 (184)
                      +|+..+.+
T Consensus       104 lL~~~~gg  111 (273)
T cd01747         104 LLTYLTSG  111 (273)
T ss_pred             HHHHHhCC
Confidence            99998864

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.08  E-value=3.2e-10  Score=93.36  Aligned_cols=145  Identities=19%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             HHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCch---hHH-----HHH---HhcCCh--HHHHHHHHHcCCcE
Q 030035           15 HIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGES---TTM-----ARL---AEYHNL--FPALREFVKMGKPV   74 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~---~~~-----~~l---~~~~~l--~~~l~~~~~~g~Pv   74 (184)
                      +.++..++|.-+.++...   ++    ++..|+|||+||..   ..|     ...   ...++.  +..||+++++|+||
T Consensus        31 yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPI  110 (243)
T COG2071          31 YVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPI  110 (243)
T ss_pred             HHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCE
Confidence            456666788877777622   22    46789999999931   111     011   001122  44799999999999


Q ss_pred             EEEchHHHHHHHhhhcccCCCcc-ccCcceeee-eecccCceeEEeeccccC-CccccCCCCCcceeEeeecCceEEecC
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQE-LVGGLDCTV-HRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~-~LG~ldv~v-~rn~~Grqv~sf~~~~~~-~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      ||||.|+|+|+-++++.-+.... -.|.+|-+- .-..+.++.-.++..-.+ +.+|    ... +..=-.|-+.|.+++
T Consensus       111 LgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g----~~~-~~VNS~HhQaIk~La  185 (243)
T COG2071         111 LGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILG----ESE-FMVNSFHHQAIKKLA  185 (243)
T ss_pred             EEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcC----ccc-eeecchHHHHHHHhC
Confidence            99999999999998753222111 122222110 001222333333322111 2221    111 555566889999999


Q ss_pred             CCcEEEEecCCCC
Q 030035          152 PDVDVLADYPVPS  164 (184)
Q Consensus       152 ~~v~vLa~~~~~~  164 (184)
                      ++.+|.|.-+|-.
T Consensus       186 ~~L~V~A~a~DG~  198 (243)
T COG2071         186 PGLVVEARAPDGT  198 (243)
T ss_pred             CCcEEEEECCCCc
Confidence            9999999977643

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.06  E-value=2.8e-10  Score=100.52  Aligned_cols=139  Identities=20%  Similarity=0.298  Sum_probs=94.6

Q ss_pred             EEEEEecCCCHHHHH-HHHHHCCCeEEEEcC---CCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~-~~L~~~G~~v~~v~~---~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      +|.||.+.-+|..++ +++|++.+...++.-   ...+  -.+.++||+||+.+.+..-..  .+...|-+   -|+|||
T Consensus        18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP--~~dp~if~---~~vpvL   92 (552)
T KOG1622|consen   18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAP--SFDPAIFE---LGVPVL   92 (552)
T ss_pred             eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCC--CCChhHhc---cCCcce
Confidence            688999988999877 779998877666642   2223  367899999998777644333  23444443   489999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeecccc-CCccccCCCCCcceeEeeecCceEEecC
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELS-VPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~~-~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      |||.|||+|++..+.              +|.|   .++|-.--+.+...+ +..+.    .......+..|.+.+.+++
T Consensus        93 GICYGmQ~i~~~~Gg--------------~V~~~~~RE~G~~eI~v~~~~~lF~~~~----~~~~~~VlltHgdsl~~v~  154 (552)
T KOG1622|consen   93 GICYGMQLINKLNGG--------------TVVKGMVREDGEDEIEVDDSVDLFSGLH----KTEFMTVLLTHGDSLSKVP  154 (552)
T ss_pred             eehhHHHHHHHHhCC--------------ccccccccCCCCceEEcCchhhhhhhhc----ccceeeeeeccccchhhcc
Confidence            999999999998753              2222   145544333333333 22221    1123358899999999999


Q ss_pred             CCcEEEEecCCC
Q 030035          152 PDVDVLADYPVP  163 (184)
Q Consensus       152 ~~v~vLa~~~~~  163 (184)
                      ++.+|.|...+.
T Consensus       155 ~g~kv~a~s~n~  166 (552)
T KOG1622|consen  155 EGFKVVAFSGNK  166 (552)
T ss_pred             ccceeEEeecCc
Confidence            999999998775

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.05  E-value=4.8e-10  Score=101.83  Aligned_cols=84  Identities=21%  Similarity=0.363  Sum_probs=62.9

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCCC------eEEEEcC--------CCCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRK--------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G~------~v~~v~~--------~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      +||++.    ++.+|.++.++|+.+|+      ++.++.+        .+.++++|+||+|||++...     ..+..+.
T Consensus       290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~-----~~g~i~~  364 (533)
T PRK05380        290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG-----IEGKILA  364 (533)
T ss_pred             EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc-----cccHHHH
Confidence            677764    56688999999998764      3344432        13467899999999986531     1245778


Q ss_pred             HHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           64 LREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      ++.+.+.++|+||||+|||+|+.++..
T Consensus       365 i~~a~e~~iPiLGIClGmQll~va~Gg  391 (533)
T PRK05380        365 IRYARENNIPFLGICLGMQLAVIEFAR  391 (533)
T ss_pred             HHHHHHCCCcEEEEchHHHHHHHHhcc
Confidence            888888999999999999999987743

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=99.04  E-value=1.2e-09  Score=108.10  Aligned_cols=117  Identities=17%  Similarity=0.126  Sum_probs=80.1

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchh--H-------HHHHHhcCChHHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~--~-------~~~l~~~~~l~~~   63 (184)
                      +||+||.++|...+  ...+|+++|+++..|+-      ...|+++++|++|||+|.  .       ...+..+..+.+.
T Consensus      1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206       1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence            58999999997655  67899999998776652      234789999999999742  1       1234434457888


Q ss_pred             HHHHHH-cCCcEEEEchHHHHHHHhhhcccCCCc-----cccCcceeeeeecccCceeEEe
Q 030035           64 LREFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQ-----ELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        64 l~~~~~-~g~PvlGIC~G~QlLa~~~~~~~~~~~-----~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      +++|++ .++++||||.|+|+|.+.-.-+ +...     ....--..+..+|.-+|-..++
T Consensus      1118 ~~~f~~~~d~~~LGICNGfQiL~~lgllP-g~~~~~~~~~~~~e~~p~l~~N~s~rfesr~ 1177 (1307)
T PLN03206       1118 FQEFYNRPDTFSLGVCNGCQLMALLGWVP-GPQVGGGLGAGGDPSQPRFVHNESGRFECRF 1177 (1307)
T ss_pred             HHHHHhCCCceEEEEcHHHHHHHHcCCCC-CCccccccccccccCCceeeecCCCCeEEec
Confidence            999995 4999999999999999863221 1100     0001123467788877655544

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=99.02  E-value=6.6e-09  Score=90.99  Aligned_cols=159  Identities=20%  Similarity=0.279  Sum_probs=103.3

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHC---CCeEEEEcC----CC-CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHH
Q 030035            1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRK----PD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFV   68 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~---G~~v~~v~~----~~-~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~   68 (184)
                      |+|.|-.-.|.    +...++.|++.   ...|..+..    .+ ...+++.+|+|||....+.+-... .-.+.||+|+
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~-~g~~~Ir~fV   79 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNG-EGNRRIRQFV   79 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhCh-HHHHHHHHHH
Confidence            78888877773    44556677763   356666642    12 246799999999986555333221 1367899999


Q ss_pred             HcCCcEEEEchHHHHHHHhhhcccCC------CccccCcceeeeeecccCc-----eeEEeeccccCCccccCCCCCcce
Q 030035           69 KMGKPVWGTCAGLIFLANKAVGQKLG------GQELVGGLDCTVHRNFFGS-----QIQSFEAELSVPALASQEGGPETF  137 (184)
Q Consensus        69 ~~g~PvlGIC~G~QlLa~~~~~~~~~------~~~~LG~ldv~v~rn~~Gr-----qv~sf~~~~~~~~~~~~~~~~~~~  137 (184)
                      ++|.-.||||+|..+-++..+...+.      ..+.|+++++..+-..|..     +..+=.+.+.+..-   ...+..+
T Consensus        80 ~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se~Gara~~l~~~~~---~~~~~~~  156 (367)
T PF09825_consen   80 ENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSESGARAVKLKVNDS---QAVPSEF  156 (367)
T ss_pred             HcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCCCCeEeEEEEecCC---CCCCcee
Confidence            99999999999999998876543322      3457899987665433321     11111112222110   1234678


Q ss_pred             eEeeecCceEEecC---CCcEEEEecCCC
Q 030035          138 RGVFIRAPAVLDVG---PDVDVLADYPVP  163 (184)
Q Consensus       138 ~a~firap~i~~~~---~~v~vLa~~~~~  163 (184)
                      ...|...|++....   .+|+|||+|.+.
T Consensus       157 ~~yynGG~~Fv~~~~~~~~v~vLA~Y~~~  185 (367)
T PF09825_consen  157 SSYYNGGGVFVDADKYDKNVEVLARYEDD  185 (367)
T ss_pred             EEEECCceEEeCccccCCCeEEEEEEecC
Confidence            88888888877763   689999999996

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.00  E-value=3.5e-09  Score=90.55  Aligned_cols=145  Identities=18%  Similarity=0.184  Sum_probs=82.0

Q ss_pred             CEEEEEecCCCHHHHH-HHHHHCC-----CeEEEEcCC-------------------CCC--CCCCEEEEcCCchh--HH
Q 030035            1 MVVGVLALQGSFNEHI-AALKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGEST--TM   51 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~-~~L~~~G-----~~v~~v~~~-------------------~~l--~~~DglIipGG~~~--~~   51 (184)
                      +|||||.+--+-.+.. +.++-++     +++..++..                   +++  .++||+||+|+.-.  ..
T Consensus        36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f  115 (302)
T PRK05368         36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF  115 (302)
T ss_pred             ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence            4799998865544433 2233333     345444321                   123  47999999998643  11


Q ss_pred             HH---HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccC--CCccccCcceeeeeecccCceeEEeeccccCCc
Q 030035           52 AR---LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL--GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA  126 (184)
Q Consensus        52 ~~---l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~--~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~  126 (184)
                      +.   ..+-..+.++++   +..+|++|||.|+|+++.++.+...  ...++.|+...++..            . .-|-
T Consensus       116 edv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~------------~-~~pL  179 (302)
T PRK05368        116 EDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLD------------P-HHPL  179 (302)
T ss_pred             CCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcC------------C-CChh
Confidence            11   111111445555   3589999999999999999865211  122444444332211            0 1121


Q ss_pred             cccCCCCCcceeEeeecCceE----EecCCCcEEEEecCCCC
Q 030035          127 LASQEGGPETFRGVFIRAPAV----LDVGPDVDVLADYPVPS  164 (184)
Q Consensus       127 ~~~~~~~~~~~~a~firap~i----~~~~~~v~vLa~~~~~~  164 (184)
                      +   .+.++.|.+.-.|-..|    .+.+++++|||+.+.-.
T Consensus       180 ~---~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~g  218 (302)
T PRK05368        180 L---RGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAG  218 (302)
T ss_pred             h---cCCCCccccceeehhhccHHHhccCCCCEEEecCCCCC
Confidence            2   23445677766776666    44678999999987543

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.00  E-value=1.6e-09  Score=93.50  Aligned_cols=85  Identities=19%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcC---CCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~---~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      +|.++. -|--...++.|.++|+++.+|.-   .+++  .+.|||+|+.|+++. ..+..   ..+.|+++++..+|++|
T Consensus       181 ~Vv~iD-~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~~---~i~~ik~l~~~~iPifG  255 (368)
T COG0505         181 HVVVID-FGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLDY---AIETIKELLGTKIPIFG  255 (368)
T ss_pred             EEEEEE-cCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHHH---HHHHHHHHhccCCCeEE
Confidence            344444 36666788999999999999963   3443  478999999987654 22322   57789999988889999


Q ss_pred             EchHHHHHHHhhhcc
Q 030035           77 TCAGLIFLANKAVGQ   91 (184)
Q Consensus        77 IC~G~QlLa~~~~~~   91 (184)
                      ||+|+||||.+++.+
T Consensus       256 ICLGHQllalA~Ga~  270 (368)
T COG0505         256 ICLGHQLLALALGAK  270 (368)
T ss_pred             EcHHHHHHHHhcCCc
Confidence            999999999998754

>TIGR00337 PyrG CTP synthase

Probab=98.99  E-value=1.7e-09  Score=98.16  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=61.4

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCCC----eE--EEEcCC-------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLGV----KG--VEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G~----~v--~~v~~~-------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      +||++.    ++.+|.++.++|+.+|+    .+  .++...       +.|+++|+|++|||++...  .   .+..+.+
T Consensus       291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai  365 (525)
T TIGR00337       291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI  365 (525)
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence            577764    44578889999999886    22  333211       1256799999999986531  1   2456778


Q ss_pred             HHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           65 REFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        65 ~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      +.+.+.++|+||||+|||+|+.++..
T Consensus       366 ~~a~e~~iP~LGIClG~Qll~i~~gr  391 (525)
T TIGR00337       366 KYARENNIPFLGICLGMQLAVIEFAR  391 (525)
T ss_pred             HHHHHcCCCEEEEcHHHHHHHHHHHH
Confidence            88888999999999999999987753

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.99  E-value=2.4e-09  Score=106.22  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C----CCCCCCCCEEEEcCCchh--HH-------HHHHhcCChHHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~----~~~l~~~DglIipGG~~~--~~-------~~l~~~~~l~~~   63 (184)
                      +||+||.++|...+  ...+|+.+|+++..|+  +    ...|+++++|++|||+|.  .+       ..+..+..+.+.
T Consensus      1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735      1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence            48999999997654  6789999999877775  2    124789999999999642  21       124444567888


Q ss_pred             HHHHH-HcCCcEEEEchHHHHHHHhhhcccCCCccccCcce-----eeeeecccCceeEEe
Q 030035           64 LREFV-KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLD-----CTVHRNFFGSQIQSF  118 (184)
Q Consensus        64 l~~~~-~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ld-----v~v~rn~~Grqv~sf  118 (184)
                      +++|+ +.++++||||.|+|+|.+.+           |+++     .+..||.-+|-..++
T Consensus      1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~-----------gllp~~~~~p~l~~N~s~~fe~r~ 1185 (1310)
T TIGR01735      1136 FQAFFKRPDTFSLGVCNGCQMLSNLL-----------EWIPGTENWPHFVRNNSERFEARV 1185 (1310)
T ss_pred             HHHHHhCCCceEEEecHHHHHHHHHh-----------CcCCCCCCCceeeecCCCCeEEee
Confidence            99999 77999999999999999432           2222     357888877655444

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=98.97  E-value=2.7e-09  Score=88.33  Aligned_cols=84  Identities=19%  Similarity=0.326  Sum_probs=58.2

Q ss_pred             EEEEEec----CCCHHHHHHHHHHC----CCeEEE--EcCC--------CCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            2 VVGVLAL----QGSFNEHIAALKRL----GVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         2 ~IgVl~~----qG~~~~~~~~L~~~----G~~v~~--v~~~--------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      |||++.-    ..+|.++.++|...    +.++.+  +...        +.+.++|+||+|||.+..  .+.   +..+.
T Consensus         2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~~---~~~~~   76 (235)
T cd01746           2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GVE---GKILA   76 (235)
T ss_pred             EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--chh---hHHHH
Confidence            6777643    34667777777663    334433  3321        246789999999997543  121   35677


Q ss_pred             HHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           64 LREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      ++++.+.++|+||||+|||+|+.++..
T Consensus        77 i~~~~~~~~PvlGIClG~Q~l~~~~g~  103 (235)
T cd01746          77 IKYARENNIPFLGICLGMQLAVIEFAR  103 (235)
T ss_pred             HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence            888888999999999999999988764

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.97  E-value=3.6e-09  Score=105.10  Aligned_cols=111  Identities=20%  Similarity=0.209  Sum_probs=79.3

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C----CCCCCCCCEEEEcCCchh--HH-------HHHHhcCChHHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~----~~~l~~~DglIipGG~~~--~~-------~~l~~~~~l~~~   63 (184)
                      +||+||.++|...+  ...+|+.+|+++..+.  +    ...|+++++|++|||+|.  ..       ..+..+..+.+.
T Consensus      1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297       1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence            58999999997655  6789999999887664  2    134889999999999642  21       222223457888


Q ss_pred             HHHHH-HcCCcEEEEchHHHHHHHhh-hcccCCCccccCcceeeeeecccCceeEEe
Q 030035           64 LREFV-KMGKPVWGTCAGLIFLANKA-VGQKLGGQELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        64 l~~~~-~~g~PvlGIC~G~QlLa~~~-~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      +++|. +.++++||||.|+|+|.+.- ..+      +.. -..+..+|.-+|...++
T Consensus      1116 ~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p------~~~-~~p~l~~N~s~rfesr~ 1165 (1290)
T PRK05297       1116 FEAFFARPDTFALGVCNGCQMMSNLKEIIP------GAE-HWPRFVRNRSEQFEARF 1165 (1290)
T ss_pred             HHHHHhCCCceEEEEcHHHHHHHHhCCccC------CCC-CCCeEeecCCCCeEEee
Confidence            99977 67899999999999999973 111      000 12378899888766654

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=98.93  E-value=9.7e-09  Score=84.12  Aligned_cols=87  Identities=23%  Similarity=0.368  Sum_probs=63.1

Q ss_pred             EEEEEec-----CC----CHHHHHHHHHHCCCeEEEEcCC---------------------------------C---C--
Q 030035            2 VVGVLAL-----QG----SFNEHIAALKRLGVKGVEIRKP---------------------------------D---Q--   34 (184)
Q Consensus         2 ~IgVl~~-----qG----~~~~~~~~L~~~G~~v~~v~~~---------------------------------~---~--   34 (184)
                      ||.|+.-     .|    .+....++|++.|+++.++...                                 .   +  
T Consensus         3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~   82 (217)
T PRK11780          3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEAD   82 (217)
T ss_pred             EEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCC
Confidence            7888764     45    2344568899999988776410                                 0   1  


Q ss_pred             CCCCCEEEEcCCchhH--H-------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           35 LQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        35 l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .++||+|+||||.+..  +       +.++.+..+.+.++++.++||||.+||.|.++|+..+
T Consensus        83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~  145 (217)
T PRK11780         83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL  145 (217)
T ss_pred             hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence            2479999999996431  1       2233344578899999999999999999999998865

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=98.89  E-value=3.3e-08  Score=93.74  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHC-C--CeEEEEcCC-------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH
Q 030035            1 MVVGVLALQGSFNE-HIAALKRL-G--VKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK   69 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~-G--~~v~~v~~~-------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~   69 (184)
                      |||.++.....|.. +++.|++. |  +++.+++..       .++..+|+|||+||++.....  .   ....++++.+
T Consensus         6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~--~---~~~i~~~i~~   80 (742)
T TIGR01823         6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA--Q---DMGIISELWE   80 (742)
T ss_pred             ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch--h---hhHHHHHHHH
Confidence            68999988888865 66888886 3  566766532       124579999998887543210  1   1223333333


Q ss_pred             c----CCcEEEEchHHHHHHHhhh
Q 030035           70 M----GKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        70 ~----g~PvlGIC~G~QlLa~~~~   89 (184)
                      .    ++||||||+|+|+|+.+++
T Consensus        81 ~~~~~~iPvLGIClG~QlLa~a~G  104 (742)
T TIGR01823        81 LANLDEVPVLGICLGFQSLCLAQG  104 (742)
T ss_pred             hcccCCCcEEEEchhhHHHHhhcC
Confidence            2    5999999999999999975

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PLN02327 CTP synthase

Probab=98.89  E-value=7.2e-09  Score=94.51  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCC----C--eEEEEcC-----C-------------CCCCCCCEEEEcCCchhHHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLG----V--KGVEIRK-----P-------------DQLQNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G----~--~v~~v~~-----~-------------~~l~~~DglIipGG~~~~~~~   53 (184)
                      +||++.    ++..|.++.++|+.++    .  ++.++.+     .             +.|.++|+|++|||+++.  .
T Consensus       299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~--~  376 (557)
T PLN02327        299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDR--G  376 (557)
T ss_pred             EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCc--c
Confidence            577654    4567888999998864    2  3444531     1             136789999999997542  1


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      .   .+....++.+.+.++|+||||+|||+++-++.
T Consensus       377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefa  409 (557)
T PLN02327        377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFA  409 (557)
T ss_pred             c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHH
Confidence            1   24566777777889999999999999998764

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=98.88  E-value=4e-08  Score=94.39  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHC-CCeEEEEcCCC----C-------CCCCCEEEEcCCchhH--HHHHHhcCChHHHHH
Q 030035            1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGESTT--MARLAEYHNLFPALR   65 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~-G~~v~~v~~~~----~-------l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~   65 (184)
                      |||.++.-...|.. +++.|++. |.+++++++.+    +       +..+|+|||.+|++..  ...+-.   ..+.|+
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi---~~~~i~  158 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGI---CLRLLL  158 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHH---HHHHHH
Confidence            67888877777766 56888887 99988887542    1       2468999998886533  111111   234455


Q ss_pred             HHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeec--cccCCccccCCCCCcceeEe
Q 030035           66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEA--ELSVPALASQEGGPETFRGV  140 (184)
Q Consensus        66 ~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~--~~~~~~~~~~~~~~~~~~a~  140 (184)
                      ++  .++||||||+|||+|+++++.              +|.|.   .+| ++....-  .-.+.++.  ++.+.+|.++
T Consensus       159 ~~--~~iPILGICLGhQ~i~~~~Gg--------------~V~~~~~~~HG-~~s~I~h~~~~lF~glp--~~~~~~f~v~  219 (918)
T PLN02889        159 EC--RDIPILGVCLGHQALGYVHGA--------------RIVHAPEPVHG-RLSEIEHNGCRLFDDIP--SGRNSGFKVV  219 (918)
T ss_pred             Hh--CCCcEEEEcHHHHHHHHhcCc--------------eEEeCCCceee-eeeeEeecCchhhcCCC--cCCCCCceEE
Confidence            43  479999999999999999853              22221   122 1211110  00111110  0001247776


Q ss_pred             eecCceE--EecCCCcEEEEecCC
Q 030035          141 FIRAPAV--LDVGPDVDVLADYPV  162 (184)
Q Consensus       141 firap~i--~~~~~~v~vLa~~~~  162 (184)
                      ==|+=.|  ..+|++.+++|..++
T Consensus       220 RYHSL~v~~~~lP~~L~~~A~t~~  243 (918)
T PLN02889        220 RYHSLVIDAESLPKELVPIAWTSS  243 (918)
T ss_pred             eCCCcccccCCCCCceEEEEEECC
Confidence            6666556  357889999997654

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.85  E-value=1e-08  Score=91.73  Aligned_cols=82  Identities=22%  Similarity=0.400  Sum_probs=59.5

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCCC------eEEEEcCC-------CCCCC-CCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP-------DQLQN-VSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G~------~v~~v~~~-------~~l~~-~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      |||++.    ++..|.++.++|+.+|+      ++.++.+.       +.+.. +|||++|||++..  ..   .+....
T Consensus       290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R--G~---eGkI~A  364 (533)
T COG0504         290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR--GV---EGKIAA  364 (533)
T ss_pred             EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC--ch---HHHHHH
Confidence            577753    67789999999998764      44555421       12222 8999999998643  11   245677


Q ss_pred             HHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           64 LREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++.+.++++|.||||+|||+..-++
T Consensus       365 i~yAREn~iP~lGIClGmQ~aviE~  389 (533)
T COG0504         365 IRYARENNIPFLGICLGMQLAVIEF  389 (533)
T ss_pred             HHHHHhcCCCEEEEchhHHHHHHHH
Confidence            8888889999999999999987543

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.84  E-value=1.9e-08  Score=77.86  Aligned_cols=84  Identities=27%  Similarity=0.414  Sum_probs=63.3

Q ss_pred             EEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCCC--CCCEEEEcCCchhHHHHHHhc
Q 030035            2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAEY   57 (184)
Q Consensus         2 ~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~~~~~l~~~   57 (184)
                      ||+||.+.|-    +....+.|++.|+++.++...                  ++++  ++|+|++|||...  ..+...
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence            6899998883    445678899999888776311                  1222  5899999999652  233333


Q ss_pred             CChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ..+.++|+++.++++|+.+||.|.++|+++
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQLLISA  108 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence            357889999999999999999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.83  E-value=3.6e-08  Score=74.73  Aligned_cols=87  Identities=24%  Similarity=0.326  Sum_probs=65.7

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCCC--CCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~~~~~l~~   56 (184)
                      +||+||.++|-    +....+.|+..|+++.++...                  ++..  ++|.|++|||..... .+..
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~-~~~~   80 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF-ALAP   80 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH-HHcc
Confidence            58999999883    444678899999988877421                  1222  589999999864321 2233


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ...+.++|+++.++++||.+||.|..+|+++.
T Consensus        81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aG  112 (142)
T cd03132          81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAG  112 (142)
T ss_pred             ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcC
Confidence            34588999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PHA03366 FGAM-synthase; Provisional

Probab=98.81  E-value=2.6e-08  Score=99.07  Aligned_cols=118  Identities=20%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C---CCCCCCCCEEEEcCCchhH---------HHHHHhcCChHHHH
Q 030035            1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGESTT---------MARLAEYHNLFPAL   64 (184)
Q Consensus         1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~---~~~l~~~DglIipGG~~~~---------~~~l~~~~~l~~~l   64 (184)
                      .||+||.++|...+  ...+|+++|+++..|.  +   ...|+++++|++|||++..         ...+..+..+.+.+
T Consensus      1029 prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~ 1108 (1304)
T PHA03366       1029 HRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDAL 1108 (1304)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHH
Confidence            38999999997655  6789999999887775  2   1228899999999997531         12333444578889


Q ss_pred             HHHHH-cCCcEEEEch-HHHHHHHhhhcc--cCCC--ccccCc-ceeeeeecccCceeEEe
Q 030035           65 REFVK-MGKPVWGTCA-GLIFLANKAVGQ--KLGG--QELVGG-LDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        65 ~~~~~-~g~PvlGIC~-G~QlLa~~~~~~--~~~~--~~~LG~-ldv~v~rn~~Grqv~sf  118 (184)
                      ++|.+ .+.++||||. |+|+|++.-.-.  ....  ...+.- -+.+..+|.-+|....+
T Consensus      1109 ~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~ 1169 (1304)
T PHA03366       1109 LRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRW 1169 (1304)
T ss_pred             HHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeec
Confidence            99985 5999999998 999999854320  0000  000111 13688899888655544

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.79  E-value=3.6e-08  Score=68.29  Aligned_cols=81  Identities=31%  Similarity=0.476  Sum_probs=60.5

Q ss_pred             EEEEecCCCH----HHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC
Q 030035            3 VGVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (184)
Q Consensus         3 IgVl~~qG~~----~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g   71 (184)
                      |+++..++..    ....+.+++.++++.+++...       +..++|++++|||........ +...+.+++++..+++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~   79 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAG   79 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcC
Confidence            4666666654    467789999999999886432       256899999999865442211 1123678899998889


Q ss_pred             CcEEEEchHHHHH
Q 030035           72 KPVWGTCAGLIFL   84 (184)
Q Consensus        72 ~PvlGIC~G~QlL   84 (184)
                      +|++|+|.|+|++
T Consensus        80 ~~i~~~c~g~~~l   92 (115)
T cd01653          80 KPILGICLGAQLL   92 (115)
T ss_pred             CEEEEECchhHhH
Confidence            9999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.76  E-value=5.4e-08  Score=77.08  Aligned_cols=86  Identities=27%  Similarity=0.431  Sum_probs=65.0

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC---------------------CCC--CCCCEEEEcCC-chhHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGG-ESTTMA   52 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~---------------------~~l--~~~DglIipGG-~~~~~~   52 (184)
                      |||+|+...|    ++....+.|+++|.++.++...                     ++.  +++|+|++||| .+... 
T Consensus         3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~-   81 (188)
T COG0693           3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY-   81 (188)
T ss_pred             ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh-
Confidence            5899999888    4555678999999876554210                     223  38999999999 54432 


Q ss_pred             HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                       +.....+.++++++.+.++||.+||.|.++|+.+.
T Consensus        82 -~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          82 -LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             -ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence             22213578999999999999999999999999875

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.75  E-value=4.6e-08  Score=75.66  Aligned_cols=85  Identities=26%  Similarity=0.452  Sum_probs=63.4

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC--------------------CCC--CCCCEEEEcCCchhHHHHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP--------------------DQL--QNVSSLIIPGGESTTMARLA   55 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~--------------------~~l--~~~DglIipGG~~~~~~~l~   55 (184)
                      ||+||..+|    ++....+.|++.|+++.++...                    ++.  .++|+|++|||...  ..+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~--~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP--DKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh--hhhc
Confidence            689999888    3444567889999988776422                    111  25799999999732  2333


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+..+.++|+++.+++++|.+||.|.++|+++.
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~ag  111 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAG  111 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcC
Confidence            334578899999999999999999999999863

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.75  E-value=6.2e-08  Score=76.37  Aligned_cols=84  Identities=24%  Similarity=0.362  Sum_probs=62.2

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC----------------------------------CCCC--CCCEE
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP----------------------------------DQLQ--NVSSL   41 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~----------------------------------~~l~--~~Dgl   41 (184)
                      ||+||...|    ++....+.|++.|+++.++...                                  +++.  ++|+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            688988877    3444668899999888777311                                  1122  57999


Q ss_pred             EEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        42 IipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ++|||....  .+.....+.++|+++.++++||.+||.|.++|+++
T Consensus        81 iv~GG~~~~--~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          81 VIPGGRAPE--YLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             EEcCCCChh--hhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            999996432  22222347889999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.64  E-value=1.7e-07  Score=92.78  Aligned_cols=117  Identities=22%  Similarity=0.175  Sum_probs=80.5

Q ss_pred             EEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C---CCCCCCCCEEEEcCCchhH---------HHHHHhcCChHHHHH
Q 030035            2 VVGVLALQGSFNE--HIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGESTT---------MARLAEYHNLFPALR   65 (184)
Q Consensus         2 ~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~---~~~l~~~DglIipGG~~~~---------~~~l~~~~~l~~~l~   65 (184)
                      ||+||.++|...+  ...+|+++|+++..|.  +   ...++++++|+++||++..         ...+..+..+.+.++
T Consensus       931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739       931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence            7999999997655  6789999999888775  2   1346799999999986421         123333346788899


Q ss_pred             HHHH-cCCcEEEEch-HHHHHHHhhhcccCCC-----ccccCcceeeeeecccCceeEEe
Q 030035           66 EFVK-MGKPVWGTCA-GLIFLANKAVGQKLGG-----QELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        66 ~~~~-~g~PvlGIC~-G~QlLa~~~~~~~~~~-----~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      +|++ .++++||||. |+|+|++.-.-.....     .+.-+-...+..||.-+|-..++
T Consensus      1011 ~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~ 1070 (1202)
T TIGR01739      1011 TFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRW 1070 (1202)
T ss_pred             HHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEee
Confidence            9995 5999999998 9999998643210000     00112226788899887644443

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.63  E-value=2.5e-07  Score=71.02  Aligned_cols=84  Identities=26%  Similarity=0.426  Sum_probs=62.6

Q ss_pred             EEEEecCC----CHHHHHHHHHHCCCeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHHHHHHhc
Q 030035            3 VGVLALQG----SFNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY   57 (184)
Q Consensus         3 IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~~~l~~~   57 (184)
                      |+||.++|    ++....+.|+..|+++.++...                   ++.  .++|.|++|||.... ..+.+.
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence            57888888    3445678899899887765310                   122  579999999997222 233334


Q ss_pred             CChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           58 HNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ..+.++|+++.+++++|.+||.|..+|+++
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a  109 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA  109 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence            458899999999999999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.63  E-value=1.1e-07  Score=63.02  Aligned_cols=80  Identities=33%  Similarity=0.467  Sum_probs=56.9

Q ss_pred             EEEecCCCH----HHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCC
Q 030035            4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         4 gVl~~qG~~----~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      +++...+..    ....+.+++.++.+.++....       +..++|++|+|||........ +.....++++++..+++
T Consensus         2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (92)
T cd03128           2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGK   80 (92)
T ss_pred             EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCC
Confidence            455555443    467788999999888875322       256899999999875542211 11236778888888899


Q ss_pred             cEEEEchHHHHH
Q 030035           73 PVWGTCAGLIFL   84 (184)
Q Consensus        73 PvlGIC~G~QlL   84 (184)
                      |++|+|.|+|++
T Consensus        81 ~i~~~~~g~~~~   92 (92)
T cd03128          81 PVLGICLGAQLL   92 (92)
T ss_pred             EEEEEecccccC
Confidence            999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=98.61  E-value=7.2e-08  Score=85.41  Aligned_cols=81  Identities=19%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCC------CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLG------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G------~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~   53 (184)
                      +|+++.    +...|.++.++|+.+.      .++.++...                  +.+.++||+++|||++..  -
T Consensus       300 ~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--G  377 (585)
T KOG2387|consen  300 RIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--G  377 (585)
T ss_pred             EEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--c
Confidence            566654    4567888999998754      345555321                  125679999999998653  0


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      .   .++...++.+.++++|.||||+|||+-.-.
T Consensus       378 v---eG~i~Aak~ARen~iP~LGiCLGmQ~AvIE  408 (585)
T KOG2387|consen  378 V---EGKILAAKWARENKIPFLGICLGMQLAVIE  408 (585)
T ss_pred             h---hHHHHHHHHHHhcCCCeEeeehhhhHHHHH
Confidence            0   245666777777899999999999986643

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=98.60  E-value=2.3e-07  Score=68.77  Aligned_cols=47  Identities=28%  Similarity=0.491  Sum_probs=40.1

Q ss_pred             CCCCEEEEcCCc-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHH
Q 030035           36 QNVSSLIIPGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL   84 (184)
Q Consensus        36 ~~~DglIipGG~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlL   84 (184)
                      .++|.||+|||. ...|..|... + .+.|++++++|+|+||||+|.-+-
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~~~-g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALNGK-G-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHHhh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence            489999999984 5667777764 5 899999999999999999998775

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=98.58  E-value=7.3e-07  Score=72.17  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=74.7

Q ss_pred             EEEEEecCC-----CHHHHHHHHHHCCCeEEEEcCC---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035            2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF   67 (184)
Q Consensus         2 ~IgVl~~qG-----~~~~~~~~L~~~G~~v~~v~~~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~   67 (184)
                      ||.++....     .+..+.+++++.|++++.+...         +.|.++|+|+++||....+-+..+..++.+.|++.
T Consensus        31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~  110 (210)
T cd03129          31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKR  110 (210)
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHH
Confidence            566665443     3555778899999987755321         23679999999999755543333334577788888


Q ss_pred             HHcCCcEEEEchHHHHHHHh--hhcccCC-----CccccCcceeeeee
Q 030035           68 VKMGKPVWGTCAGLIFLANK--AVGQKLG-----GQELVGGLDCTVHR  108 (184)
Q Consensus        68 ~~~g~PvlGIC~G~QlLa~~--~~~~~~~-----~~~~LG~ldv~v~r  108 (184)
                      +++|+|+.|+|+|.+++++.  ...+..+     ...+||+++..+.-
T Consensus       111 ~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~p  158 (210)
T cd03129         111 VARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIIDP  158 (210)
T ss_pred             HHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeECC
Confidence            88999999999999999996  2221111     35689999877654

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.56  E-value=4.5e-07  Score=74.11  Aligned_cols=76  Identities=24%  Similarity=0.349  Sum_probs=55.6

Q ss_pred             HHHHHHHHHCCCeEEEEcCC---------------------------------C---C--CCCCCEEEEcCCchhH--HH
Q 030035           13 NEHIAALKRLGVKGVEIRKP---------------------------------D---Q--LQNVSSLIIPGGESTT--MA   52 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~---------------------------------~---~--l~~~DglIipGG~~~~--~~   52 (184)
                      ....+.|++.|++++++...                                 .   +  +++||+|+||||.+..  +.
T Consensus        20 ~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~   99 (213)
T cd03133          20 VLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLS   99 (213)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhh
Confidence            34568899999998876420                                 0   1  2369999999996431  21


Q ss_pred             HHH-------hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           53 RLA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        53 ~l~-------~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+.       .+..+.+.++++.++||||.+||.|.++|+++.
T Consensus       100 D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~  142 (213)
T cd03133         100 DFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL  142 (213)
T ss_pred             hhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence            111       223478899999999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.54  E-value=2.8e-07  Score=72.64  Aligned_cols=84  Identities=24%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             EEEEecCC----CHHHHHHHHHHCC-------CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHH
Q 030035            3 VGVLALQG----SFNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         3 IgVl~~qG----~~~~~~~~L~~~G-------~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~   53 (184)
                      |++|.++|    ++....+.|+.++       +++.++...                  ++..++|.|++|||....  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~   78 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G   78 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence            57888887    4555667787765       666665311                  134579999999986432  1


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +.+...+.++|+++.+++++|.+||.|.++|+++.
T Consensus        79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aG  113 (187)
T cd03137          79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEAG  113 (187)
T ss_pred             ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcc
Confidence            23334578899999999999999999999999874

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.53  E-value=1e-06  Score=70.24  Aligned_cols=85  Identities=20%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcC------C---------------CCC--CCCCEEEEcCCchhHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRK------P---------------DQL--QNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~------~---------------~~l--~~~DglIipGG~~~~~~~   53 (184)
                      |||.||..+|    ++....+.|++.|+++.++..      +               +++  +++|.|++|||.... ..
T Consensus         3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~   81 (196)
T PRK11574          3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC   81 (196)
T ss_pred             ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence            5899999988    456677889998887766421      0               122  368999999986322 12


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN   86 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~   86 (184)
                      +.....+.++|+++.++|++|.+||.|..+|..
T Consensus        82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~  114 (196)
T PRK11574         82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV  114 (196)
T ss_pred             hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence            233234789999999999999999999986543

>TIGR01383 not_thiJ DJ-1 family protein

Probab=98.52  E-value=6.9e-07  Score=69.84  Aligned_cols=86  Identities=24%  Similarity=0.353  Sum_probs=62.3

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEE--EcC----C---------------CC--CCCCCEEEEcCCchhHHHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVE--IRK----P---------------DQ--LQNVSSLIIPGGESTTMARL   54 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~--v~~----~---------------~~--l~~~DglIipGG~~~~~~~l   54 (184)
                      ||+||.++|    ++....+.|+..|.++.+  +..    +               ++  ..++|.|+||||.... ..+
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~   79 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL   79 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence            689999988    344466788888866553  321    1               12  3468999999995322 123


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .....+.++|+++.+++++|.+||.|..+|+++.
T Consensus        80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aG  113 (179)
T TIGR01383        80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAAG  113 (179)
T ss_pred             hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcC
Confidence            3333478999999999999999999999999974

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=98.52  E-value=5.2e-07  Score=85.97  Aligned_cols=80  Identities=23%  Similarity=0.324  Sum_probs=60.3

Q ss_pred             cCCCHHHHHHHHHHCCCeEEEEcCCCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHH
Q 030035            8 LQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA   85 (184)
Q Consensus         8 ~qG~~~~~~~~L~~~G~~v~~v~~~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa   85 (184)
                      ..|--...++.|.++|+++.++.-.-++  .++|||+|.+|+++.  .+..  .+.+.+++.++.++|++|||.|||+||
T Consensus       179 DcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdP--e~~~--~~v~~vr~lL~~~~PvfGIClGHQllA  254 (1435)
T KOG0370|consen  179 DCGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDP--ELCP--LLVQNVRELLESNVPVFGICLGHQLLA  254 (1435)
T ss_pred             ccCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCc--hhhH--HHHHHHHHHHhCCCCeEEEehhhHHHH
Confidence            3566677789999999999999644333  389999999987543  1111  145567777777899999999999999


Q ss_pred             Hhhhcc
Q 030035           86 NKAVGQ   91 (184)
Q Consensus        86 ~~~~~~   91 (184)
                      .+.+.+
T Consensus       255 ~AaGak  260 (1435)
T KOG0370|consen  255 LAAGAK  260 (1435)
T ss_pred             HhhCCc
Confidence            998753

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.47  E-value=4.5e-07  Score=71.03  Aligned_cols=84  Identities=23%  Similarity=0.366  Sum_probs=62.5

Q ss_pred             EEEEecCC----CHHHHHHHHHHCC-----CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHHHH
Q 030035            3 VGVLALQG----SFNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA   55 (184)
Q Consensus         3 IgVl~~qG----~~~~~~~~L~~~G-----~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~l~   55 (184)
                      |+||.++|    ++....+.|+.++     +++.++...                  ++..++|.|++|||....  .+.
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~--~~~   78 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTR--ALV   78 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchh--hhc
Confidence            57888887    4555678888887     787776411                  123479999999996432  233


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+..+.++|+++.+++++|.++|.|..+|+++.
T Consensus        79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~ag  111 (183)
T cd03139          79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAAG  111 (183)
T ss_pred             cCHHHHHHHHHhcccCCEEEEEchHHHHHHhcC
Confidence            334578899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.46  E-value=1.2e-06  Score=69.52  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             CCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           34 QLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        34 ~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +.+++|.|+||||...... .+..+..+.++|+++.+++++|.+||.|..+|+++.
T Consensus        66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag  121 (195)
T cd03138          66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAG  121 (195)
T ss_pred             ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHcc
Confidence            3468999999998543211 233334578999999999999999999999999864

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK04155 chaperone protein HchA; Provisional

Probab=98.45  E-value=1.8e-06  Score=73.62  Aligned_cols=52  Identities=21%  Similarity=0.332  Sum_probs=43.1

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++||+|+||||.... ..|..+..+.+.|+++.+++|||.+||.|.++|..+-
T Consensus       146 ~dYDaV~iPGG~g~~-~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~  197 (287)
T PRK04155        146 SDYAAVFIPGGHGAL-IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAG  197 (287)
T ss_pred             ccccEEEECCCCchH-HHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcC
Confidence            589999999997543 4566666688999999999999999999999877753

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.44  E-value=7.3e-07  Score=73.69  Aligned_cols=51  Identities=24%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ++||+|+||||.... ..+.++..+.+.|+++.++||||.+||.|.++|+.+
T Consensus        93 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147          93 DDYGIFFVAGGHGTL-FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             hhCcEEEECCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence            479999999997543 234444457889999999999999999999999886

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=98.35  E-value=2.7e-06  Score=80.51  Aligned_cols=88  Identities=24%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      +||+||+..|-    +..+.++|++.|+++.++...                  ++.  ..+|+|+||||.... ..+..
T Consensus       598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~  676 (752)
T PRK11249        598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD  676 (752)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence            58999999883    455778899999988877421                  111  258999999996432 24444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      ...+.++|+++.+.+|+|.+||.|.++|+.+..
T Consensus       677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL  709 (752)
T PRK11249        677 NGDARYYLLEAYKHLKPIALAGDARKLKAALKL  709 (752)
T ss_pred             CHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCC
Confidence            445789999999999999999999999998643

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.35  E-value=1.5e-06  Score=67.99  Aligned_cols=83  Identities=28%  Similarity=0.364  Sum_probs=58.3

Q ss_pred             EEEEecCC----CHHHHHHHHHHC-CCeEEEEcC------------------CCCC--CCCCEEEEcCCchhHHHHHHhc
Q 030035            3 VGVLALQG----SFNEHIAALKRL-GVKGVEIRK------------------PDQL--QNVSSLIIPGGESTTMARLAEY   57 (184)
Q Consensus         3 IgVl~~qG----~~~~~~~~L~~~-G~~v~~v~~------------------~~~l--~~~DglIipGG~~~~~~~l~~~   57 (184)
                      |+|+.+.|    ++....+.|++. ++++.++..                  .+++  .++|.|+||||.....  . ..
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~--~-~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN--P-EA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCccccc--C-Cc
Confidence            46777766    344456778775 667665531                  1233  4689999999964221  1 12


Q ss_pred             CChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           58 HNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..+.++|+++.++++++.+||.|.++|+++.
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aG  108 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATLALARAG  108 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHHHHHHCC
Confidence            2478899999999999999999999999974

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.31  E-value=2.3e-06  Score=67.48  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..++|.||+|||....   +..+..+.++|+++.++++.|.++|.|..+|+++.
T Consensus        62 ~~~~D~liipgg~~~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aG  112 (185)
T cd03136          62 APPLDYLFVVGGLGAR---RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAG  112 (185)
T ss_pred             cCCCCEEEEeCCCCcc---ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcc
Confidence            4579999999986433   23334578999999999999999999999999863

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.28  E-value=2.6e-06  Score=70.43  Aligned_cols=51  Identities=22%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ++||+|++|||... +..|..+..+.+.++++.++||||.+||.|.+.|..+
T Consensus        95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            47999999999643 3345555567889999999999999999999988775

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=98.14  E-value=1.3e-06  Score=66.73  Aligned_cols=52  Identities=33%  Similarity=0.638  Sum_probs=40.4

Q ss_pred             CCCCEEEEcCCchhHHHHHH-hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 QNVSSLIIPGGESTTMARLA-EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~-~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+||+||||||.... ..|. ++..+.++++++.+++|||.+||.|..+|+++-
T Consensus        36 ~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~g   88 (147)
T PF01965_consen   36 SDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAAG   88 (147)
T ss_dssp             GGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHTT
T ss_pred             hhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhccC
Confidence            479999999997633 2444 213588899999999999999999999999874

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=6.4e-06  Score=63.59  Aligned_cols=94  Identities=21%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             HHHHHHHHHCCCeEEEEcCCC--------CCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035           13 NEHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIF   83 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~--------~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql   83 (184)
                      ....++|+++|+++..+...+        .|.++|+|++.||....+ ..+.. .++.+.|++++++|+++.|+-+|..+
T Consensus         3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i   81 (154)
T PF03575_consen    3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMI   81 (154)
T ss_dssp             HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred             HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhh
Confidence            456788999999988776332        256899999999965554 44444 68999999999999999999999999


Q ss_pred             HHHhhhcccC-C-----CccccCcceeeee
Q 030035           84 LANKAVGQKL-G-----GQELVGGLDCTVH  107 (184)
Q Consensus        84 La~~~~~~~~-~-----~~~~LG~ldv~v~  107 (184)
                      ++..+..... .     ...+||+++..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~gLgl~~~~i~  111 (154)
T PF03575_consen   82 LGPSIETDSDSDDVELTNYDGLGLLPFVII  111 (154)
T ss_dssp             TSSBSCCGTTCCGCCECESB---SSSSEEE
T ss_pred             ccCceeecCcCCcccCCCCCcCCCCCCEeE
Confidence            8776643221 1     1247777775543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=2.8e-05  Score=63.46  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=99.6

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHCC---CeEEEEc------CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035            1 MVVGVLALQGS----FNEHIAALKRLG---VKGVEIR------KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF   67 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~G---~~v~~v~------~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~   67 (184)
                      |+|-|-.-.|.    +...++.|+..-   ..+..|.      .+ ..+....||+|||.+..+....+. --...|..+
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~Ep-W~~~T~lLV~pGGaDlpY~~~l~g-~g~a~i~~y   78 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEP-WEETTLLLVFPGGADLPYVQVLQG-LGTARIKNY   78 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCc-chhceEEEEecCCCCchHHHHhcc-hhhhhHHHH
Confidence            67777665553    333445555532   2333332      22 335677899999986665443332 124578899


Q ss_pred             HHcCCcEEEEchHHHHHHHhhhcccCC-----CccccCcceeeeeecccCceeEEee-------ccccCCccccCCCCCc
Q 030035           68 VKMGKPVWGTCAGLIFLANKAVGQKLG-----GQELVGGLDCTVHRNFFGSQIQSFE-------AELSVPALASQEGGPE  135 (184)
Q Consensus        68 ~~~g~PvlGIC~G~QlLa~~~~~~~~~-----~~~~LG~ldv~v~rn~~Grqv~sf~-------~~~~~~~~~~~~~~~~  135 (184)
                      +++|.-.||||+|.-.=+..++..+..     ..+.|++++++++--.|.+  -++.       +.+.++.+      +.
T Consensus        79 vk~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~GP~y~g--F~Y~S~~GaRaa~l~~~d~------~~  150 (253)
T COG4285          79 VKEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTARGPAYAG--FSYNSESGARAAPLKFNDF------LG  150 (253)
T ss_pred             HhcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccCCCccCC--ccccCcccceeeeeeeCCC------cc
Confidence            999999999999987766655533221     3467999999887655543  2222       23344433      23


Q ss_pred             ceeEeeecCceEEec--CCCcEEEEecCCCCc
Q 030035          136 TFRGVFIRAPAVLDV--GPDVDVLADYPVPSN  165 (184)
Q Consensus       136 ~~~a~firap~i~~~--~~~v~vLa~~~~~~~  165 (184)
                      .+.+.|...-++.+.  -++|+|+|+|++.+.
T Consensus       151 ~~~~~FNGG~~F~~aE~~~~v~I~ArY~e~~~  182 (253)
T COG4285         151 DCYAYFNGGGYFEDAENYPNVEIEARYEELPG  182 (253)
T ss_pred             ceEEEEcCceEEeccCCCCCcEEEEehhcCCC
Confidence            678899999888887  378999999998753

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=98.07  E-value=7.8e-06  Score=66.86  Aligned_cols=52  Identities=33%  Similarity=0.496  Sum_probs=41.3

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +++|+|+||||.... ..+.....+.++|+++.+++++|.+||.|.++|+++.
T Consensus        89 ~~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag  140 (221)
T cd03141          89 SDYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK  140 (221)
T ss_pred             hHceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence            368999999996432 1233334578999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=98.04  E-value=1.6e-05  Score=61.56  Aligned_cols=54  Identities=26%  Similarity=0.435  Sum_probs=40.9

Q ss_pred             CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           33 DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        33 ~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++..++|.||+|||....  .......+.++|++..++++++.++|.|..+|+++.
T Consensus        57 ~~~~~~D~lvvpg~~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aG  110 (166)
T PF13278_consen   57 DDAPDFDILVVPGGPGFD--AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAG  110 (166)
T ss_dssp             CCCSCCSEEEEE-STTHH--HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTT
T ss_pred             hhcccCCEEEeCCCCCch--hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhh
Confidence            345689999999997722  222223478889998889999999999999999974

...

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=98.00  E-value=3.2e-05  Score=63.61  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=52.8

Q ss_pred             HHHHHHHCCCeEEEEcCC-------------------CC--CCCCCEEEEcCC-chhHHHHHHhcCChHHHHHHHHHcCC
Q 030035           15 HIAALKRLGVKGVEIRKP-------------------DQ--LQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~~-------------------~~--l~~~DglIipGG-~~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      .++.|++.|+++.++...                   .|  -+.||.+||||| ....  .|.......+.++++.+.|+
T Consensus        24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e--~L~~~~~v~~lvK~q~~~gk  101 (247)
T KOG2764|consen   24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAE--TLSECEKVVDLVKEQAESGK  101 (247)
T ss_pred             eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhh--hhhhcHHHHHHHHHHHhcCC
Confidence            367899999999887411                   11  157999999999 4433  44444446788999999999


Q ss_pred             cEEEEchHH-HHHHHhh
Q 030035           73 PVWGTCAGL-IFLANKA   88 (184)
Q Consensus        73 PvlGIC~G~-QlLa~~~   88 (184)
                      +|..||+|. .+|+...
T Consensus       102 LIaaICaap~~al~a~g  118 (247)
T KOG2764|consen  102 LIAAICAAPLTALAAHG  118 (247)
T ss_pred             eEEEeecchHHHHhhcc
Confidence            999999998 5555544

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=97.93  E-value=5.2e-05  Score=64.93  Aligned_cols=85  Identities=22%  Similarity=0.330  Sum_probs=58.3

Q ss_pred             EEEEEecCC----CHHHHHHHHHHC----C---CeEEEEcC------------------CCCCCCCCEEEEcCCchhHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRL----G---VKGVEIRK------------------PDQLQNVSSLIIPGGESTTMA   52 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~----G---~~v~~v~~------------------~~~l~~~DglIipGG~~~~~~   52 (184)
                      +|+|+.+.|    ++....+.|+.+    +   +++.++..                  .++.+++|.||+|||..... 
T Consensus        11 ~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~~~-   89 (322)
T PRK09393         11 LVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGPDA-   89 (322)
T ss_pred             EEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCcccc-
Confidence            799999998    344455555332    1   23443321                  12356899999999854321 


Q ss_pred             HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                        .....+.++|+++.+++++|.+||.|..+|+++..
T Consensus        90 --~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGl  124 (322)
T PRK09393         90 --PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGL  124 (322)
T ss_pred             --cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccC
Confidence              12234788999999999999999999999998753

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00016  Score=65.88  Aligned_cols=108  Identities=17%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             CCCCEEEE-cC-CchhHHHHHHhcCCh-HHHHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec-cc
Q 030035           36 QNVSSLII-PG-GESTTMARLAEYHNL-FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FF  111 (184)
Q Consensus        36 ~~~DglIi-pG-G~~~~~~~l~~~~~l-~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn-~~  111 (184)
                      ..+|+|++ || |.+......    +. .+.+.++  +.+||+|||+|+|.|+-.-+.            ++. .-| +.
T Consensus        63 ~~FDaIVVgPGPG~P~~a~d~----gI~~rl~~~~--~~iPilGICLGfQal~l~hGA------------~v~-~~n~p~  123 (767)
T KOG1224|consen   63 VAFDAIVVGPGPGSPMCAADI----GICLRLLLEC--RDIPILGICLGFQALGLVHGA------------HVV-HANEPV  123 (767)
T ss_pred             cccceEEecCCCCCCCcHHHH----HHHHHHHHhc--CCCceeeeehhhHhHhhhccc------------cee-cCCCcc
Confidence            35899999 44 333211111    11 2222222  369999999999999976532            111 111 33


Q ss_pred             CceeEEeecc--ccCCccccCCCCCcceeEeeecCceEEecC-CCcEEEEecCCCC
Q 030035          112 GSQIQSFEAE--LSVPALASQEGGPETFRGVFIRAPAVLDVG-PDVDVLADYPVPS  164 (184)
Q Consensus       112 Grqv~sf~~~--~~~~~~~~~~~~~~~~~a~firap~i~~~~-~~v~vLa~~~~~~  164 (184)
                      -+|+.+.+.+  ..+-++.  .+.|..|+.+=-|+=+|..+| +-+.+|++..+.-
T Consensus       124 HGrvs~i~~~~~~~f~gi~--sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddn  177 (767)
T KOG1224|consen  124 HGRVSGIEHDGNILFSGIP--SGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDN  177 (767)
T ss_pred             cceeeeEEecCcEEEccCC--CCCcccceeEEeEEEEecCCchhhhcceeEeecCC
Confidence            3566666543  2222332  345567887777777777777 4478888877653

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=97.68  E-value=0.00042  Score=56.59  Aligned_cols=87  Identities=20%  Similarity=0.280  Sum_probs=63.1

Q ss_pred             EEEEEecCC-----CHHHHHHHHHHCCCe-EEEEcCC-----------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLALQG-----SFNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG-----~~~~~~~~L~~~G~~-v~~v~~~-----------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      ||.++-..+     ...++.+.+++.|++ +..+...           +.+.++|+|++.||....+-...+..++.+.|
T Consensus        31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l  110 (217)
T cd03145          31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDAL  110 (217)
T ss_pred             cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHH
Confidence            577775543     244466788899984 4444211           12578999999999655443433445788899


Q ss_pred             HHHHHcCCcEEEEchHHHHHHHhh
Q 030035           65 REFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        65 ~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++.+++|.|+.|+-+|..+++...
T Consensus       111 ~~~~~~G~v~~G~SAGA~i~~~~~  134 (217)
T cd03145         111 RKVYRGGVVIGGTSAGAAVMSDTM  134 (217)
T ss_pred             HHHHHcCCEEEEccHHHHhhhhcc
Confidence            999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=97.55  E-value=0.00025  Score=56.37  Aligned_cols=50  Identities=14%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             CCCCCEEEEcCCchhHH--------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           35 LQNVSSLIIPGGESTTM--------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        35 l~~~DglIipGG~~~~~--------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      ..++||+||+|.....+        +.+.+   +.+|.+   +..+|+|++|.|+|....+..+
T Consensus        60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~---i~dwa~---~~v~stl~iCWgaqaal~~~yG  117 (175)
T cd03131          60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTE---ILDWAK---THVTSTLFSCWAAMAALYYFYG  117 (175)
T ss_pred             ccCCCEEEEeCCCcccCCccccchHHHHHH---HHHHHH---HhCcchHHHHHHHHHHHHHHcC
Confidence            46899999999854221        22222   445555   4679999999999998888754

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00013  Score=59.49  Aligned_cols=76  Identities=25%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             HHHHHHHCCCeEEEEcC---C-CC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035           15 HIAALKRLGVKGVEIRK---P-DQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN   86 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~---~-~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~   86 (184)
                      ..++|++.|+++.-++.   + ++    |.+.|.|++.||.--..-.+.++.++.+.||+.+++|+|..|+-+|..+-+.
T Consensus        54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p  133 (224)
T COG3340          54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGP  133 (224)
T ss_pred             HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecC
Confidence            45778999998877642   2 22    4569999999997555445555578999999999999999999999999888


Q ss_pred             hhhc
Q 030035           87 KAVG   90 (184)
Q Consensus        87 ~~~~   90 (184)
                      .+..
T Consensus       134 ~I~t  137 (224)
T COG3340         134 TIET  137 (224)
T ss_pred             ceee
Confidence            7754

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=97.51  E-value=0.0028  Score=50.09  Aligned_cols=70  Identities=24%  Similarity=0.338  Sum_probs=46.7

Q ss_pred             HHHHH-HHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCC-hHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035           15 HIAAL-KRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGKPVWGTCAGLIFLAN   86 (184)
Q Consensus        15 ~~~~L-~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~-l~~~l~~~~~~g~PvlGIC~G~QlLa~   86 (184)
                      +.+.| -+.|+.+.+.++.+    +|  .+.++|+|+-|+++..+     .+ ..+.++++. ..+|+||+|.|.|.+.+
T Consensus        34 v~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~D-----sGIs~~~i~~f~-~~iP~fGvCMGlQCi~e  107 (223)
T KOG0026|consen   34 LCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQD-----SGISLQTVLELG-PLVPLFGVCMGLQCIGE  107 (223)
T ss_pred             HHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCcc-----ccchHHHHHHhC-CCCceeeeehhhhhhhh
Confidence            44666 56788888887542    33  36788888544433211     12 245677663 46899999999999999


Q ss_pred             hhhc
Q 030035           87 KAVG   90 (184)
Q Consensus        87 ~~~~   90 (184)
                      ++++
T Consensus       108 ~fGG  111 (223)
T KOG0026|consen  108 AFGG  111 (223)
T ss_pred             hhCc
Confidence            8853

>TIGR02069 cyanophycinase cyanophycinase

Probab=97.34  E-value=0.00098  Score=55.74  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             EEEEEecCC-CH----HHHHHHHHHCCCe-EEEEc--CC---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLALQG-SF----NEHIAALKRLGVK-GVEIR--KP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG-~~----~~~~~~L~~~G~~-v~~v~--~~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      ||+++-..+ ..    ..+.++|+++|++ +..+.  +.         +.|.++|+|++.||....+-...+..++.+.|
T Consensus        30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l  109 (250)
T TIGR02069        30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRL  109 (250)
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHH
Confidence            677775433 22    2355678889984 44332  11         12578999999999654443333446788899


Q ss_pred             HHHHHcCCcEEEEchHHHHHHHhhhccc-------CC---CccccCcceeeee
Q 030035           65 REFVKMGKPVWGTCAGLIFLANKAVGQK-------LG---GQELVGGLDCTVH  107 (184)
Q Consensus        65 ~~~~~~g~PvlGIC~G~QlLa~~~~~~~-------~~---~~~~LG~ldv~v~  107 (184)
                      ++++++|.|+.|+-+|..+|+.......       ..   ...+||+++..+.
T Consensus       110 ~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi  162 (250)
T TIGR02069       110 RKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI  162 (250)
T ss_pred             HHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence            9999999999999999999987763211       01   2357999987654

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=97.32  E-value=0.00032  Score=58.43  Aligned_cols=85  Identities=22%  Similarity=0.414  Sum_probs=54.8

Q ss_pred             EEEEecCCCH---------------HHHHHHHHHCCCeEEEEc--CCCC-----CCCCCEEEEcCCchhH--HHHHHhcC
Q 030035            3 VGVLALQGSF---------------NEHIAALKRLGVKGVEIR--KPDQ-----LQNVSSLIIPGGESTT--MARLAEYH   58 (184)
Q Consensus         3 IgVl~~qG~~---------------~~~~~~L~~~G~~v~~v~--~~~~-----l~~~DglIipGG~~~~--~~~l~~~~   58 (184)
                      ||||.-.|+-               .++++.++..|+.|+.+.  .+++     ++...|+|+|||....  +-++.+. 
T Consensus        55 IGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkk-  133 (340)
T KOG1559|consen   55 IGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKK-  133 (340)
T ss_pred             eEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHH-
Confidence            8888766531               346677888899988764  3332     4678999999995332  2222221 


Q ss_pred             ChHHHHHHHHHcC--CcEEEEchHHHHHHHhhh
Q 030035           59 NLFPALREFVKMG--KPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        59 ~l~~~l~~~~~~g--~PvlGIC~G~QlLa~~~~   89 (184)
                       ++....+..++|  -||+|||+|+.+|+--+.
T Consensus       134 -ifnk~le~nDaGehFPvyg~CLGFE~lsmiIS  165 (340)
T KOG1559|consen  134 -IFNKVLERNDAGEHFPVYGICLGFELLSMIIS  165 (340)
T ss_pred             -HHHHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence             222222222333  799999999999987664

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.0017  Score=62.39  Aligned_cols=113  Identities=21%  Similarity=0.239  Sum_probs=74.0

Q ss_pred             EEEEEecCCC--HHHHHHHHHHCCCeEEEEcCC------CCCCCCCEEEEcCCchhH--H-------HHHHhcCChHHHH
Q 030035            2 VVGVLALQGS--FNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG~--~~~~~~~L~~~G~~v~~v~~~------~~l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~l   64 (184)
                      ||+||--+|.  ..|+..++..+|++.+-|.-.      -.|+++-||+.+||++..  .       ..+.-+.+.....
T Consensus      1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred             ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence            7999999994  677889999999987766421      346789999999997643  1       1111122344444


Q ss_pred             HHHHH-cCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035           65 REFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        65 ~~~~~-~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      .+|.+ +..--||||.|.|||+.----   + ..-=++.|+...+|.-||--.+|
T Consensus      1140 ~~F~~R~DtFslGiCNGCQlms~Lg~i---~-p~~~~~p~~~l~~Nes~rfE~r~ 1190 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRLGWI---G-PEVGKWPDVFLDHNESGRFECRF 1190 (1320)
T ss_pred             HHHhcCCCceeeecccHhHHHHHhccc---C-ccccCCCceeeecccccceeeeE
Confidence            55544 467889999999999975321   0 11123456667788766544444

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=96.55  E-value=0.0076  Score=41.93  Aligned_cols=42  Identities=24%  Similarity=0.467  Sum_probs=38.0

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG   46 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG   46 (184)
                      ||||   .-++.++.++|++.|++++...+..++..+|++|+.|-
T Consensus         3 kIAV---E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~   44 (80)
T PF03698_consen    3 KIAV---EEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ   44 (80)
T ss_pred             eEEe---cCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence            6776   77889999999999999999998888999999999995

>TIGR01001 metA homoserine O-succinyltransferase

Probab=96.54  E-value=0.0056  Score=52.37  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=56.8

Q ss_pred             CEEEEEecCCCHHHHH----HHHHHCC--CeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHH--
Q 030035            1 MVVGVLALQGSFNEHI----AALKRLG--VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTM--   51 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~----~~L~~~G--~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~--   51 (184)
                      +|||||.+-=+-.+..    +.|....  +++..++..                   +++  ..+||+||+|.+-..+  
T Consensus        36 L~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~F  115 (300)
T TIGR01001        36 LEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPF  115 (300)
T ss_pred             eeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCc
Confidence            4799999866555443    3332222  345554311                   223  4799999999753221  


Q ss_pred             ------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh-hhcccC-CCccccCcceeeee
Q 030035           52 ------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK-AVGQKL-GGQELVGGLDCTVH  107 (184)
Q Consensus        52 ------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~-~~~~~~-~~~~~LG~ldv~v~  107 (184)
                            +.|.+   +++|.++   .-...+.||.|.|.-... .+-++. -..+..|++.-++.
T Consensus       116 eeV~YW~El~~---I~dwsk~---~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~  173 (300)
T TIGR01001       116 EDVAYWEELTE---IMEWSKH---NVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIA  173 (300)
T ss_pred             ccCCcHHHHHH---HHHHHHH---cCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccC
Confidence                  22222   3344433   457899999999984444 332222 14567777775554

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=96.31  E-value=0.016  Score=49.74  Aligned_cols=100  Identities=22%  Similarity=0.259  Sum_probs=49.5

Q ss_pred             CEEEEEecCCCHHHHHHH-HHHCC-----CeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHH--
Q 030035            1 MVVGVLALQGSFNEHIAA-LKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTM--   51 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~-L~~~G-----~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~--   51 (184)
                      +|||||.+--+-.+.... ++-++     +++..++..                   +++  ..+||+||+|.+-..+  
T Consensus        35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F  114 (298)
T PF04204_consen   35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF  114 (298)
T ss_dssp             EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred             eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence            479999987776665533 33333     455554311                   233  4799999999753322  


Q ss_pred             ------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHH-HHHhhhcccCC-CccccCcceeee
Q 030035           52 ------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIF-LANKAVGQKLG-GQELVGGLDCTV  106 (184)
Q Consensus        52 ------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql-La~~~~~~~~~-~~~~LG~ldv~v  106 (184)
                            +.+.+   +++|.+   +.-.+.+.||.|.|. |-...+-++.. ..+..|++.-++
T Consensus       115 e~V~YW~El~~---i~dwa~---~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~  171 (298)
T PF04204_consen  115 EEVDYWDELTE---IFDWAK---THVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRV  171 (298)
T ss_dssp             GGSTTHHHHHH---HHHHHH---HHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEE
T ss_pred             ccCCcHHHHHH---HHHHHH---HcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeec
Confidence                  22222   344444   346899999999998 44444322111 345556555543

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.30  E-value=0.029  Score=44.29  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             CCCCEEEEcCCchhH--HHHHHh-------cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           36 QNVSSLIIPGGESTT--MARLAE-------YHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        36 ~~~DglIipGG~~~~--~~~l~~-------~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      +++|+||+|||++..  ...+.-       +.++....+.+.++|||+--||....|+.+-++.
T Consensus        84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~  147 (217)
T COG3155          84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF  147 (217)
T ss_pred             HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence            578999999998643  212211       2346677888889999999999999999998753

>PRK03094 hypothetical protein; Provisional

Probab=95.98  E-value=0.022  Score=39.56  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=36.6

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG   46 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG   46 (184)
                      ||||   .-++..+.++|++.|++++..++..+...+|++|++|-
T Consensus         3 kIaV---E~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~   44 (80)
T PRK03094          3 KIGV---EQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ   44 (80)
T ss_pred             eEEe---ecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence            5776   66788889999999999999988777889999999994

>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.80  E-value=0.0056  Score=51.19  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhccc----CC------CccccCccee
Q 030035           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK----LG------GQELVGGLDC  104 (184)
Q Consensus        35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~----~~------~~~~LG~ldv  104 (184)
                      +.++++|++.||....+-...++..+.+.|++.+..|.-+-|+.+|..+|+.......    ++      .-.+||+++.
T Consensus       104 v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~~mi~~g~s~~~pn~~~v~m~~glg~lp~  183 (293)
T COG4242         104 VENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSDHMIVAGDSGEYPNRELVDMGFGLGFLPG  183 (293)
T ss_pred             HHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCCceEeccCCCCCCCcchhhhccccccccc
Confidence            5689999999996443322233457889999999999999999999999998765321    11      2357888888


Q ss_pred             eee------ecccCce
Q 030035          105 TVH------RNFFGSQ  114 (184)
Q Consensus       105 ~v~------rn~~Grq  114 (184)
                      .+.      ||-.||-
T Consensus       184 ~ivDqHF~~R~RmGRL  199 (293)
T COG4242         184 VIVDQHFDNRKRMGRL  199 (293)
T ss_pred             eeeehhhhhhhHHHHH
Confidence            774      5555543

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=95.56  E-value=0.02  Score=49.78  Aligned_cols=52  Identities=23%  Similarity=0.326  Sum_probs=37.6

Q ss_pred             CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ...+|.+++.||.......  ....+.++|++..+.|..+.|||.|.-+|+++.
T Consensus        74 ~~~~~~v~v~~g~~~~~~~--~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aG  125 (328)
T COG4977          74 APPIDILPVCGGLGPERPV--NAPALLAWLRRAARRGARLGGLCTGAFVLAEAG  125 (328)
T ss_pred             cCcceEEEEecCCCccccc--chHHHHHHHHHHHhcCCeEEEehHhHHHHHHhc
Confidence            3457888887764322101  101368899999999999999999999999974

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.53  E-value=0.085  Score=45.14  Aligned_cols=71  Identities=18%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-------------------C-CCC-CCCCEEEEcCCchhHHHH
Q 030035            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------P-DQL-QNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-------------------~-~~l-~~~DglIipGG~~~~~~~   53 (184)
                      |||||+.-.+.      ..++.+.|++.|+++.+-..                   . +++ +++|.+|.-||-+|.+  
T Consensus         1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L--   78 (292)
T PRK01911          1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFL--   78 (292)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHH--
Confidence            89999977664      33455668888988776421                   0 223 2589999999988753  


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                              ...+.+...++||+||=.|.
T Consensus        79 --------~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         79 --------RTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             --------HHHHHhcCCCCCEEEEecCC
Confidence                    33444445689999998885

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.22  E-value=0.12  Score=43.88  Aligned_cols=70  Identities=26%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-----C-------CCC--CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P-------DQL--QNVSSLIIPGGESTTMARLAEYHNL   60 (184)
Q Consensus         1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-----~-------~~l--~~~DglIipGG~~~~~~~l~~~~~l   60 (184)
                      |||||+.-.|.      ...+.+.|++.|+++.+...     .       .++  .++|.+|.-||-++..         
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL---------   71 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL---------   71 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence            89999987774      33455668888998877521     0       122  2689999999988753         


Q ss_pred             HHHHHHHHHcCCcEEEEchHH
Q 030035           61 FPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        61 ~~~l~~~~~~g~PvlGIC~G~   81 (184)
                       +.++ ....++|++||=.|.
T Consensus        72 -~a~~-~~~~~~pi~gIn~G~   90 (277)
T PRK03708         72 -RIEH-KTKKDIPILGINMGT   90 (277)
T ss_pred             -HHHH-hcCCCCeEEEEeCCC
Confidence             3334 334589999998886

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.98  E-value=0.3  Score=42.09  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=46.8

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC-----------------------CCC-CCCCEEEEcCCchhHH
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM   51 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~-----------------------~~l-~~~DglIipGG~~~~~   51 (184)
                      ||||+.-.+.      ...+.+.|++.|+++.+-...                       .++ +++|.+|.-||-+|.+
T Consensus         3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL   82 (305)
T PRK02649          3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVL   82 (305)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHHH
Confidence            5999877654      233456678889888664310                       122 2589999999988753


Q ss_pred             HHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                                ...+.+...++|++||=.|.
T Consensus        83 ----------~aar~~~~~~iPilGIN~G~  102 (305)
T PRK02649         83 ----------SAARQLAPCGIPLLTINTGH  102 (305)
T ss_pred             ----------HHHHHhcCCCCcEEEEeCCC
Confidence                      33444445689999998774

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.42  E-value=0.49  Score=40.39  Aligned_cols=71  Identities=23%  Similarity=0.234  Sum_probs=46.8

Q ss_pred             CEEEEEecCCC-----HHHHHHHHHHCCCeEEEEcCC-----------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~-----~~~~~~~L~~~G~~v~~v~~~-----------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      |||||+.-.+.     ..++.+.|++.|+++.+-...           +++ .++|.+|.-||-+|.+          ..
T Consensus        11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~a   80 (287)
T PRK14077         11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SL   80 (287)
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HH
Confidence            36999877653     122345577788887764311           222 3689999999988753          33


Q ss_pred             HHHHHHcCCcEEEEchHH
Q 030035           64 LREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~   81 (184)
                      .+.+...++||+||=.|.
T Consensus        81 a~~~~~~~~PilGIN~G~   98 (287)
T PRK14077         81 CRKAAEYDKFVLGIHAGH   98 (287)
T ss_pred             HHHhcCCCCcEEEEeCCC
Confidence            444545689999999886

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.96  E-value=0.85  Score=39.11  Aligned_cols=70  Identities=20%  Similarity=0.278  Sum_probs=46.7

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-------------------CCCCC-CCCEEEEcCCchhHHHHHH
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------PDQLQ-NVSSLIIPGGESTTMARLA   55 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-------------------~~~l~-~~DglIipGG~~~~~~~l~   55 (184)
                      ||||+.-.+.      ...+.+.|++.|+++.+-..                   ..++. .+|.+|.-||-+|.+    
T Consensus         7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L----   82 (296)
T PRK04539          7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFL----   82 (296)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHH----
Confidence            6999877654      23345567888988776421                   01222 589999999988753    


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                            ...+.+...++||+||=.|.
T Consensus        83 ------~aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         83 ------SVAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             ------HHHHHhcccCCCEEEEecCC
Confidence                  33344444589999999886

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.85  E-value=0.76  Score=39.33  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL   60 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l   60 (184)
                      +|||+.-.+.      ...+.+.|++.|+++.+-...              +++ +++|.+|.-||-+|..         
T Consensus         7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L---------   77 (292)
T PRK03378          7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNML---------   77 (292)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHH---------
Confidence            5999877664      233556677889887764310              122 3589999999988753         


Q ss_pred             HHHHHHHHHcCCcEEEEchHH
Q 030035           61 FPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        61 ~~~l~~~~~~g~PvlGIC~G~   81 (184)
                       ...+.+...++|++||=.|.
T Consensus        78 -~aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         78 -GAARVLARYDIKVIGINRGN   97 (292)
T ss_pred             -HHHHHhcCCCCeEEEEECCC
Confidence             23344444579999999887

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=92.84  E-value=0.44  Score=36.21  Aligned_cols=59  Identities=19%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ..+.++|++.|+.+.++....++.+++.||+|.-....-       ...+.|++++++|.-++..+
T Consensus        29 ~~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~~-------~~~~~l~~~v~~GG~li~~~   87 (154)
T cd03143          29 LALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLSD-------ATAAALRAYVENGGTLVAGP   87 (154)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCCH-------HHHHHHHHHHHCCCEEEEec
Confidence            446688999999999998777888999999998642220       24678999999876555543

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.83  E-value=0.45  Score=40.15  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             CEEEEEecCCC--H----HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH--cCC
Q 030035            1 MVVGVLALQGS--F----NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK   72 (184)
Q Consensus         1 m~IgVl~~qG~--~----~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~--~g~   72 (184)
                      |||+|+.- ..  -    ..+.+.|++.|+++.       .+++|.+|.-||-+|-+          ...+.+..  .++
T Consensus         1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~Dlvi~iGGDGT~L----------~a~~~~~~~~~~i   62 (265)
T PRK04885          1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFILD-------EKNPDIVISVGGDGTLL----------SAFHRYENQLDKV   62 (265)
T ss_pred             CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCccC-------CcCCCEEEEECCcHHHH----------HHHHHhcccCCCC
Confidence            89999866 43  1    223344666777621       24689999999988753          33444443  589


Q ss_pred             cEEEEchHH
Q 030035           73 PVWGTCAGL   81 (184)
Q Consensus        73 PvlGIC~G~   81 (184)
                      |++||=.|.
T Consensus        63 PilGIN~G~   71 (265)
T PRK04885         63 RFVGVHTGH   71 (265)
T ss_pred             eEEEEeCCC
Confidence            999998885

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.69  E-value=0.78  Score=39.55  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC-----------------------CCC-CCCCEEEEcCCchhHH
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM   51 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~-----------------------~~l-~~~DglIipGG~~~~~   51 (184)
                      ||||+.-.+.      ..++.+.|++.|+++.+....                       +++ +++|.+|.-||-+|.+
T Consensus         7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L   86 (306)
T PRK03372          7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL   86 (306)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence            5999877664      233556677889887764310                       122 3589999999988753


Q ss_pred             HHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                                ...+.+...++||+||=.|.
T Consensus        87 ----------~aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         87 ----------RAAELARAADVPVLGVNLGH  106 (306)
T ss_pred             ----------HHHHHhccCCCcEEEEecCC
Confidence                      33444445689999998874

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=92.62  E-value=0.25  Score=39.79  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      ..+.++|++.|+.+.+++..++|++|..||+|.-....     +  ...+.|++++++|.-++..
T Consensus        33 ~~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~l~-----~--~~~~~L~~yV~~GG~li~~   90 (207)
T PF08532_consen   33 RGWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYILS-----P--EFAERLRAYVENGGTLILT   90 (207)
T ss_dssp             HHHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC-------H--HH---HHHHHT-SS-EEE-
T ss_pred             HHHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEEEC-----h--HHHHHHHHHHHCCCEEEEE
Confidence            34567899999999999887799999999999854222     1  1456788999886555543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=92.41  E-value=0.84  Score=39.00  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL   60 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l   60 (184)
                      +|+|+.-.+.      ...+.+.|++.|+++.+....              +++ +.+|.+|.-||-++..         
T Consensus         7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l---------   77 (291)
T PRK02155          7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML---------   77 (291)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence            5999877664      344556788889886664310              122 2589999999988753         


Q ss_pred             HHHHHHHHHcCCcEEEEchHH
Q 030035           61 FPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        61 ~~~l~~~~~~g~PvlGIC~G~   81 (184)
                       +.++.+...++|++||=.|.
T Consensus        78 -~~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         78 -GIGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             -HHHHHhcCCCCCEEEEcCCC
Confidence             33444445689999998886

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.95  E-value=0.9  Score=42.35  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC---------------CCCCCCCCEEEEcCCchhHHHHHHhcCC
Q 030035            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK---------------PDQLQNVSSLIIPGGESTTMARLAEYHN   59 (184)
Q Consensus         1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~---------------~~~l~~~DglIipGG~~~~~~~l~~~~~   59 (184)
                      |||+|+.-.+.      ...+.+.|++.|+++.+-..               ..++.++|.+|.-||-+|.+        
T Consensus       291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L--------  362 (569)
T PRK14076        291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL--------  362 (569)
T ss_pred             cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence            78999877663      22345567778887766421               01234689999999988753        


Q ss_pred             hHHHHHHHHHcCCcEEEEchHH
Q 030035           60 LFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        60 l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                        ...+.+...++||+||=.|.
T Consensus       363 --~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        363 --RASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             --HHHHHhcCCCCCEEEEcCCC
Confidence              33444445689999998775

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.95  E-value=1  Score=37.78  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=44.8

Q ss_pred             CEEEEEecCCCH---HHHHHHHHHCCCeEEEEcCCC-CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            1 MVVGVLALQGSF---NEHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         1 m~IgVl~~qG~~---~~~~~~L~~~G~~v~~v~~~~-~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||++|..-....   .++.+.|.+.|.++.+..... ...++|.+|.-||-++..          ...+.+   ++||+|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~a~~~~---~~Pilg   67 (256)
T PRK14075          1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVL----------KAAKKV---GTPLVG   67 (256)
T ss_pred             CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHH----------HHHHHc---CCCEEE
Confidence            899998554422   224455667787766553322 235789999999988753          223333   799999


Q ss_pred             EchHH
Q 030035           77 TCAGL   81 (184)
Q Consensus        77 IC~G~   81 (184)
                      |=.|.
T Consensus        68 in~G~   72 (256)
T PRK14075         68 FKAGR   72 (256)
T ss_pred             EeCCC
Confidence            98875

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.52  E-value=1.6  Score=37.57  Aligned_cols=70  Identities=20%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC----------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~----------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      ||+++.-.|.      ...+.+.|++.|+++.+....          ... ..+|.+|.-||.++..          +.+
T Consensus         5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l----------~~~   74 (305)
T PRK02645          5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVL----------AAA   74 (305)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHH----------HHH
Confidence            5888877764      223456677889987765321          112 3589999999988753          233


Q ss_pred             HHHHHcCCcEEEEch-HH
Q 030035           65 REFVKMGKPVWGTCA-GL   81 (184)
Q Consensus        65 ~~~~~~g~PvlGIC~-G~   81 (184)
                      +.+...++|++||=. |.
T Consensus        75 ~~~~~~~~pv~gin~~G~   92 (305)
T PRK02645         75 RHLAPHDIPILSVNVGGH   92 (305)
T ss_pred             HHhccCCCCEEEEecCCc
Confidence            333346899999987 53

>PLN02929 NADH kinase

Probab=90.32  E-value=1.2  Score=38.39  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=39.8

Q ss_pred             HHHHHHHCCCeEEEEcCC---CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035           15 HIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~~---~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      +.+.|++.|+++..+...   +.+.++|.+|.-||-+|..          ...+.+ ..++||+||=.|
T Consensus        39 ~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L----------~aa~~~-~~~iPvlGIN~G   96 (301)
T PLN02929         39 CKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLL----------QASHFL-DDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHH----------HHHHHc-CCCCcEEEEECC
Confidence            456788899998766432   2357899999999988753          233334 568999999888

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=89.79  E-value=2.6  Score=35.75  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             CEEEEEecCCCH------HHHHHHHHHCCCeEEEEcCC-----------CCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~------~~~~~~L~~~G~~v~~v~~~-----------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      |||||+.-.+.-      ..+.+.| +.|+++.+-...           +++ ++|.+|.-||-+|-...          
T Consensus         1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a----------   68 (271)
T PRK01185          1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRT----------   68 (271)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHH----------
Confidence            899999876641      2233445 457776654311           122 68999999998875322          


Q ss_pred             HHHHHHcCCcEEEEchH
Q 030035           64 LREFVKMGKPVWGTCAG   80 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G   80 (184)
                      .+.   ...||+||=.|
T Consensus        69 ~~~---~~~PilGIN~G   82 (271)
T PRK01185         69 LQR---AKGPILGINMG   82 (271)
T ss_pred             HHH---cCCCEEEEECC
Confidence            222   13599999888

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=89.49  E-value=3.1  Score=32.81  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=50.9

Q ss_pred             CEEEEEe--cCCCHHHHH----HHHHHCCCeEEEEcC--CC--CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH-
Q 030035            1 MVVGVLA--LQGSFNEHI----AALKRLGVKGVEIRK--PD--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-   69 (184)
Q Consensus         1 m~IgVl~--~qG~~~~~~----~~L~~~G~~v~~v~~--~~--~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~-   69 (184)
                      ||+.|+.  -.|+-.++.    ..|++.|.++.+...  ..  +++++|.+||.-+  --++++.+  .+.+.++++.+ 
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAs--I~~~h~~~--~~~~Fv~k~~e~   76 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGAS--IRYGHFHE--AVQSFVKKHAEA   76 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecc--hhhhhhHH--HHHHHHHHHHHH
Confidence            7888764  357765544    457889998888752  22  5789999999654  23333333  24555655544 


Q ss_pred             -cCCcEEEEchHH
Q 030035           70 -MGKPVWGTCAGL   81 (184)
Q Consensus        70 -~g~PvlGIC~G~   81 (184)
                       +++|..-.|.+.
T Consensus        77 L~~kP~A~f~vnl   89 (175)
T COG4635          77 LSTKPSAFFSVNL   89 (175)
T ss_pred             HhcCCceEEEeeh
Confidence             489999999874

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=88.81  E-value=2.8  Score=32.99  Aligned_cols=75  Identities=13%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             CEEEEEec--CCCHHHHHHHHHH-C--CCeEEEEc--C--CCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHH-
Q 030035            1 MVVGVLAL--QGSFNEHIAALKR-L--GVKGVEIR--K--PDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV-   68 (184)
Q Consensus         1 m~IgVl~~--qG~~~~~~~~L~~-~--G~~v~~v~--~--~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~-   68 (184)
                      |||.|+..  .|+-..+.+.+.+ +  |.++.++.  .  ..++.++|.||+.++-  +.....      +.+++++.. 
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~~   74 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHAT   74 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHHH
Confidence            88887654  6887776665433 2  55666553  2  2357789998886642  111111      223332221 


Q ss_pred             -HcCCcEEEEchHH
Q 030035           69 -KMGKPVWGTCAGL   81 (184)
Q Consensus        69 -~~g~PvlGIC~G~   81 (184)
                       -.++|++-.|.|+
T Consensus        75 ~l~~K~v~~F~v~l   88 (177)
T PRK11104         75 QLNQMPSAFFSVNL   88 (177)
T ss_pred             HhCCCeEEEEEech
Confidence             2578888888773

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=87.65  E-value=0.77  Score=36.98  Aligned_cols=60  Identities=17%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             HHHH-HCCCeEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           17 AALK-RLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        17 ~~L~-~~G~~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                      +.|+ ..++++++..++     +.|+++|.||+.......+.   .  ...+.|++++++|++++|+..+.
T Consensus        26 ~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~---~--~~~~al~~~v~~Ggglv~lH~~~   91 (217)
T PF06283_consen   26 QLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELT---D--EQRAALRDYVENGGGLVGLHGAA   91 (217)
T ss_dssp             HHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS----H--HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred             HHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCC---H--HHHHHHHHHHHcCCCEEEEcccc
Confidence            4456 467888877653     34789999999764332221   1  24678999999999999999443

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=86.79  E-value=4.6  Score=34.57  Aligned_cols=70  Identities=21%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL   60 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l   60 (184)
                      ||||+.-.+.      ...+.+.|++.|+++.+....              .++ +.+|.+|.-||-++...        
T Consensus         6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~--------   77 (295)
T PRK01231          6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLG--------   77 (295)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHH--------
Confidence            6999876553      233455677788887765311              112 25899999999887532        


Q ss_pred             HHHHHHHHHcCCcEEEEchHH
Q 030035           61 FPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        61 ~~~l~~~~~~g~PvlGIC~G~   81 (184)
                        ..+.+...++||+||=.|.
T Consensus        78 --~~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         78 --AARALARHNVPVLGINRGR   96 (295)
T ss_pred             --HHHHhcCCCCCEEEEeCCc
Confidence              2333334689999998885

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=86.60  E-value=3.1  Score=35.06  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             CEEEEEecCCC-HHHHHHHHHH----CCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQGS-FNEHIAALKR----LGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~qG~-~~~~~~~L~~----~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||..+++-.-. -.+..+.|++    .+.         ..+++|.+|.-||-+|-+          ..++.+...++|++
T Consensus         1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPil   61 (259)
T PRK00561          1 MKYKIFASTTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKVV   61 (259)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcEE
Confidence            78888775443 2223344433    221         235689999999988753          33445545789999


Q ss_pred             EEchHH
Q 030035           76 GTCAGL   81 (184)
Q Consensus        76 GIC~G~   81 (184)
                      ||=.|.
T Consensus        62 GIN~G~   67 (259)
T PRK00561         62 GINTGH   67 (259)
T ss_pred             EEecCC
Confidence            998874

>PRK09271 flavodoxin; Provisional

Probab=84.28  E-value=11  Score=28.89  Aligned_cols=45  Identities=13%  Similarity=0.098  Sum_probs=28.9

Q ss_pred             CEEEEEe--cCCCHHHHHH----HHHHCCCeEEEEcC--------CCCCCCCCEEEEcC
Q 030035            1 MVVGVLA--LQGSFNEHIA----ALKRLGVKGVEIRK--------PDQLQNVSSLIIPG   45 (184)
Q Consensus         1 m~IgVl~--~qG~~~~~~~----~L~~~G~~v~~v~~--------~~~l~~~DglIipG   45 (184)
                      |||.|+.  ..||-..+.+    .|+..|+++.+...        ..++.++|.++|.-
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt   59 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT   59 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence            8888875  4677666544    45667887765431        12445789998854

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=84.12  E-value=6.4  Score=35.80  Aligned_cols=30  Identities=27%  Similarity=0.051  Sum_probs=26.6

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR   30 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~   30 (184)
                      |||.|+.+...=.+..+.|.+.|+++.+..
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D   37 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD   37 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence            689999998888999999999999888775

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.95  E-value=0.62  Score=35.47  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             CCCCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035           31 KPDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCA   79 (184)
Q Consensus        31 ~~~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~g~PvlGIC~   79 (184)
                      ..+++..+|.+++-||-+.. ++.-.+  +..+.+.+  ..++|+.|+|.
T Consensus        79 e~e~~n~aDvvVLlGGLaMP~~gv~~d--~~kel~ee--~~~kkliGvCf  124 (154)
T COG4090          79 EREELNSADVVVLLGGLAMPKIGVTPD--DAKELLEE--LGNKKLIGVCF  124 (154)
T ss_pred             CccccccccEEEEEcccccCcCCCCHH--HHHHHHHh--cCCCceEEeeH
Confidence            34567789999999995332 100000  12333332  24678999997

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=81.70  E-value=5.2  Score=33.94  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=39.6

Q ss_pred             HHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035           13 NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      ..+.+.|++.|+++.+-...              +++ .++|.+|.-||-+|.+          ...+.+...++||+||
T Consensus         3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~aa~~~~~~~~PilgI   72 (272)
T PRK02231          3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDGNML----------GRARVLAKYDIPLIGI   72 (272)
T ss_pred             HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcHHHH----------HHHHHhccCCCcEEEE
Confidence            34567788899887764310              222 2589999999988753          3344444568999999


Q ss_pred             chH
Q 030035           78 CAG   80 (184)
Q Consensus        78 C~G   80 (184)
                      =.|
T Consensus        73 n~G   75 (272)
T PRK02231         73 NRG   75 (272)
T ss_pred             eCC
Confidence            877

>PRK06242 flavodoxin; Provisional

Probab=80.76  E-value=5.4  Score=29.77  Aligned_cols=45  Identities=13%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             CEEEEEec---CCCHHHHHHHHHH-CCCeEEEEcC--CCCCCCCCEEEEcC
Q 030035            1 MVVGVLAL---QGSFNEHIAALKR-LGVKGVEIRK--PDQLQNVSSLIIPG   45 (184)
Q Consensus         1 m~IgVl~~---qG~~~~~~~~L~~-~G~~v~~v~~--~~~l~~~DglIipG   45 (184)
                      ||+.|+.+   .||-..+++.+.+ ++.++..+..  ..++.++|.||+..
T Consensus         1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~   51 (150)
T PRK06242          1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGS   51 (150)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeC
Confidence            88888765   3788888877644 5666555542  34578999998864

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=80.07  E-value=4.1  Score=34.58  Aligned_cols=81  Identities=22%  Similarity=0.252  Sum_probs=46.6

Q ss_pred             EEEEEecCCCHHHHH-HHHHHCCC-----eEEEEc--------CC-----------CCC--CCCCEEEEcCCchhH----
Q 030035            2 VVGVLALQGSFNEHI-AALKRLGV-----KGVEIR--------KP-----------DQL--QNVSSLIIPGGESTT----   50 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~-~~L~~~G~-----~v~~v~--------~~-----------~~l--~~~DglIipGG~~~~----   50 (184)
                      ||+||.+--+-.+.. +.|+-+|.     ++.+++        ++           +++  ..+||+||+|.+-..    
T Consensus        37 ~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve~l~fe  116 (307)
T COG1897          37 KILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVELLPFE  116 (307)
T ss_pred             eeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCCcccccCch
Confidence            688888766554433 55666553     344432        11           223  479999999974221    


Q ss_pred             ---H-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           51 ---M-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        51 ---~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                         + +.+.+   +++|-+.-+   .-.|-||.|.|.--...
T Consensus       117 eV~YW~el~~---I~eWskt~V---~STl~ICWgaqAaly~~  152 (307)
T COG1897         117 EVAYWEELKQ---IFEWSKTHV---TSTLHICWGAQAALYYF  152 (307)
T ss_pred             hhhhHHHHHH---HHHHHhhcc---hhhhhhHHHHHHHHHHH
Confidence               1 22222   455555433   35789999999755544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2nv0_A	196	Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of		1e-34
2nv2_B	204	Structure Of The Plp Synthase Complex Pdx12 (YAADE)		1e-34
1r9g_A	216	Three-Dimensional Structure Of Yaae From Bacillus S		2e-33
2iss_D	208	Structure Of The Plp Synthase Holoenzyme From Therm		1e-32
1q7r_A	219	X-Ray Crystallographic Analysis Of A Predicted Amid		1e-32
2ywd_A	191	Crystal Structure Of Glutamine Amidotransferase Len		2e-32
2abw_A	227	Glutaminase Subunit Of The Plasmodial Plp Synthase		3e-23
4ads_G	217	Crystal Structure Of Plasmodial Plp Synthase Comple		4e-23
2ywj_A	186	Crystal Structure Of Uncharacterized Conserved Prot		1e-22

>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp Synthase From Bacillus Subtilis Length = 196

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 9/160 (5%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L++  L       E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 152

>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM BACILLUS Subtilis Length = 204

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 9/160 (5%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L++  L       E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 152

>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis Length = 216

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 9/160 (5%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTT  RL + +  
Sbjct: 22  LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTXRRLIDTYQF 81
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP +GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 82  XEPLREFAAQGKPXFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 138
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L++  L       E F GVFIRAP +L+ G +V+VL+++
Sbjct: 139 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 172

>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga Maritima Length = 208

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 8/160 (5%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL +QG   EH+ AL +LGV+ + ++ P+QL  V  LI+PGGESTTM R+ +  ++
Sbjct: 21  MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L E +  G PV+ TCAG+I LA +    K   QE +G LD TV RN +G Q++SFE 
Sbjct: 81  DEKLVERINNGLPVFATCAGVILLAKRI---KNYSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
            + +PA+     G + FR +FIRAP +++ G +V++LA Y
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATY 172

>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted Amidotransferase From B. Stearothermophilus At 1.9 A Resolution Length = 219

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 9/158 (5%)
Query: 3   VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
           +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTT  RL + + L  
Sbjct: 26  IGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXE 85
Query: 63  ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
            L++F   GKP +GTCAGLI LA + VG     +  +G  D TV RN FG Q +SFEAEL
Sbjct: 86  PLKQFAAAGKPXFGTCAGLILLAKRIVGYD---EPHLGLXDITVERNSFGRQRESFEAEL 142
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           S+  +       + F GVFIRAP +++ G  VDVLA Y
Sbjct: 143 SIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY 174

>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase Length = 191

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 112/183 (61%), Gaps = 15/183 (8%)
Query: 2   VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
           VVGVLALQG F EH  ALKRLG++  E+RK + L+ + +LI+PGGESTT+ +LA  + + 
Sbjct: 4   VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIE 63
Query: 62  PALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
             +R+ V+ G   ++GTCAG I+LA + VG     Q  +G L+  V RN FG Q++SFE 
Sbjct: 64  DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFEE 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYP--VPSNKVLYSSSTVE 175
           +L V  L S       F GVFIRAP    +G  V+VLA   D P  V   KVL SS   E
Sbjct: 122 DLEVEGLGS-------FHGVFIRAPVFRRLGEGVEVLARLGDLPVLVRQGKVLASSFHPE 174
Query: 176 IQE 178
           + E
Sbjct: 175 LTE 177

>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase (Vitamin B6 Biosynthesis) Length = 227

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +     +++R    L     L+IPGGESTT+ R   Y
Sbjct: 4   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+      KL    G +   GGLD T+ RNF
Sbjct: 64  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPS 164
           +GSQ  SF   L++  ++      +      IRAP + ++  D V VLA +   S
Sbjct: 124 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHES 176

>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex Length = 217

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 13/171 (7%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +     +++R    L     L+IPGGESTT+ R   Y
Sbjct: 2   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 61
Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+      KL    G +   GGLD T+ RNF
Sbjct: 62  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 121
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADY 160
           +GSQ  SF   L++  ++      +      IRAP + ++  D V VLA +
Sbjct: 122 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF 170

>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Methanocaldococcus Jannaschii Length = 186

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 15/159 (9%)
Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M++GVLA+QG   EH  A+K+ G +  ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1   MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              ++       P+ GTCAG++ L+ K  G     Q L+  +D TV RN +G Q+ SFE 
Sbjct: 61  LEKIKN---SNLPILGTCAGMVLLS-KGTGI---NQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLA 158
           E+    L           GVFIRAP V  +   DV+V+A
Sbjct: 114 EIEFKDLGK-------VYGVFIRAPVVDKILSDDVEVIA 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	6e-64
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	3e-63
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	3e-62
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	1e-56
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	8e-51
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	6e-47
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	2e-08
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	3e-07
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	3e-05
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	4e-04

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196

 Score =  194 bits (495), Expect = 6e-64
 Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAG---SDNPHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +L++       G  E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIK------GLDEPFTGVFIRAPHILEAGENVEVLSEH 152

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208

 Score =  193 bits (491), Expect = 3e-63
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 8/158 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL +QG   EH+ AL +LGV+ + ++ P+QL  V  LI+PGGESTTM R+ +  ++
Sbjct: 21  MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L E +  G PV+ TCAG+I LA +        QE +G LD TV RN +G Q++SFE 
Sbjct: 81  DEKLVERINNGLPVFATCAGVILLAKRIKN---YSQEKLGVLDITVERNAYGRQVESFET 137

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158
            + +PA+     G + FR +FIRAP +++ G +V++LA
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILA 170

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219

 Score =  190 bits (485), Expect = 3e-62
 Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTTM RL + + L
Sbjct: 24  MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 83

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 84  MEPLKQFAAAGKPMFGTCAGLILLAKRIVG---YDEPHLGLMDITVERNSFGRQRESFEA 140

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           ELS+       G  + F GVFIRAP +++ G  VDVLA Y
Sbjct: 141 ELSIK------GVGDGFVGVFIRAPHIVEAGDGVDVLATY 174

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186

 Score =  175 bits (446), Expect = 1e-56
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 15/161 (9%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M++GVLA+QG   EH  A+K+ G +  ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1   MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              ++       P+ GTCAG++ L+          Q L+  +D TV RN +G Q+ SFE 
Sbjct: 61  LEKIKNS---NLPILGTCAGMVLLSKGTG----INQILLELMDITVKRNAYGRQVDSFEK 113

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADY 160
           E+                GVFIRAP V  +   DV+V+A  
Sbjct: 114 EIEFK-------DLGKVYGVFIRAPVVDKILSDDVEVIARD 147

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191

 Score =  161 bits (408), Expect = 8e-51
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 10/161 (6%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
            VVGVLALQG F EH  ALKRLG++  E+RK + L+ + +LI+PGGESTT+ +LA  + +
Sbjct: 3   GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGI 62

Query: 61  FPALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
              +R+ V+ G   ++GTCAG I+LA + VG     Q  +G L+  V RN FG Q++SFE
Sbjct: 63  EDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFE 120

Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
            +L V        G  +F GVFIRAP    +G  V+VLA  
Sbjct: 121 EDLEVE-------GLGSFHGVFIRAPVFRRLGEGVEVLARL 154

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227

 Score =  152 bits (385), Expect = 6e-47
 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMARLAEY 57
           + +GVL+LQG F  HI    +L +  + I   R    L     L+IPGGESTT+ R   Y
Sbjct: 4   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63

Query: 58  HN--LFPALREFVK-MGKPVWGTCAGLIFLA----NKAVGQKLGGQELVGGLDCTVHRNF 110
            N  L+ AL  F+  + KP+WGTCAG I L+    N  +    G +   GGLD T+ RNF
Sbjct: 64  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123

Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLA 158
           +GSQ  SF   L++ +        +      IRAP + ++   +V VLA
Sbjct: 124 YGSQNDSFICSLNIISD--SSAFKKDLTAACIRAPYIREILSDEVKVLA 170

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Length = 200

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
          AL+  G      + P   +    L++PG G     M    E       +R  ++ G P  
Sbjct: 21 ALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQES-GFVERVRRHLERGLPFL 79

Query: 76 GTCAGL 81
          G C G+
Sbjct: 80 GICVGM 85

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B Length = 201

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 18 ALKRLGVKG----VEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMG 71
           +KR         +E+ +  +      L IPG G     M RL E  +L   +R+ V+  
Sbjct: 19 GVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLREN-DLIDFVRKHVEDE 77

Query: 72 KPVWGTCAGL 81
          + V G C G+
Sbjct: 78 RYVVGVCLGM 87

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} Length = 213

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 1  MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST-------TM 51
              V+   GS  +     AL+  G +   +   D+L +   +I+PGG S         +
Sbjct: 3  PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAV 62

Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAG 80
          A       +   + +  + GK + G C G
Sbjct: 63 AARE---KIAFEIAKAAERGKLIMGICNG 88

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Length = 555

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 15/112 (13%)

Query: 18  ALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKP 73
           A++ LG +   ++ P    +   S LI+PG G     +  L         +RE+++ GKP
Sbjct: 23  AIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNR-GFEKPIREYIESGKP 81

Query: 74  VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVP 125
           + G   GL  L   +   +      +  +D  + R  F         E  VP
Sbjct: 82  IMGIXVGLQALFAGS--VESPKSTGLNYIDFKLSR--FDDS------EKPVP 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.95
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.94
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.94
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.94
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.94
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.93
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.89
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.86
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.84
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.79
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.78
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.74
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	99.73
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.72
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.72
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.72
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.71
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.71
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.71
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.7
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.68
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.68
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.64
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.63
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.6
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.57
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.56
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.55
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.51
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	99.49
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.45
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.38
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.33
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.2
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.19
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.14
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.14
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.13
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	98.97
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	98.95
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	98.94
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.93
2fex_A	188	Conserved hypothetical protein; structural genomic	98.92
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.91
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.89
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	98.86
3er6_A	209	Putative transcriptional regulator protein; struct	98.83
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.78
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	98.77
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.72
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.71
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.7
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	98.7
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.67
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.66
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.66
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.65
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.63
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	98.61
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.61
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.58
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.58
1u9c_A	224	APC35852; structural genomics, protein structure i	98.55
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.52
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	98.44
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.34
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.32
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.31
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	98.2
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	98.16
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	98.14
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.14
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	95.47
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	95.25
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	91.64
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	91.09
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	89.15
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	88.45
2an1_A	292	Putative kinase; structural genomics, PSI, protein	88.4
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	88.11
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	86.58
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	86.57
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	82.72

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.95  E-value=3e-28  Score=197.59  Aligned_cols=159  Identities=39%  Similarity=0.682  Sum_probs=128.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHC---CCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhc--CChHHHHHHHHHc-CCcE
Q 030035            1 MVVGVLALQGSFNEHIAALKRL---GVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEY--HNLFPALREFVKM-GKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~---G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~--~~l~~~l~~~~~~-g~Pv   74 (184)
                      |||||++++|++.++.++|+++   |++++.++.+++++++|+||||||.++.+..+.++  .++.+.|++++++ |+||
T Consensus         4 ~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~Pi   83 (227)
T 2abw_A            4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI   83 (227)
T ss_dssp             EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcCccccccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEE
Confidence            5899999999999999999999   99999998776788899999999987777655442  3578899999999 9999


Q ss_pred             EEEchHHHHHHHhhhcccCC----CccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEec
Q 030035           75 WGTCAGLIFLANKAVGQKLG----GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~----~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~  150 (184)
                      ||||+|||+|++++.+....    ..+++|++++++.++.+|++..++..++.++++..  .....|+.+|+|+++|.++
T Consensus        84 lGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~~~~~~~~h~~~v~~~  161 (227)
T 2abw_A           84 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSS--AFKKDLTAACIRAPYIREI  161 (227)
T ss_dssp             EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCT--TCCTTCEEEEESCCEEEEE
T ss_pred             EEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccc--cCCCceeEEEEEcceEeec
Confidence            99999999999998764211    17899999999999999999888876666666520  0124789999999999998


Q ss_pred             -CCCcEEEEecC
Q 030035          151 -GPDVDVLADYP  161 (184)
Q Consensus       151 -~~~v~vLa~~~  161 (184)
                       |++.+++|+.+
T Consensus       162 ~~~~~~vla~~~  173 (227)
T 2abw_A          162 LSDEVKVLATFS  173 (227)
T ss_dssp             CCTTCEEEEEEE
T ss_pred             CCCCcEEEEEcc
Confidence             99999999985

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=8.5e-27  Score=187.04  Aligned_cols=153  Identities=44%  Similarity=0.777  Sum_probs=131.2

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      |||+|+.+.|+|.++.++|++.|+++++++..++++++|+||||||.++.++.+.+...+.+.|++++++++|+||||+|
T Consensus        21 ~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G  100 (208)
T 2iss_D           21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAG  100 (208)
T ss_dssp             CEEEEECSSSCHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEECCCchHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHH
Confidence            68999999999999999999999999999887778899999999998777766665567889999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      +|+|++++++.   ..+++|++++++.++.+|++..++.....+++++|+     +|+..++|.+.+..+|++.+++|+.
T Consensus       101 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~v~a~~  172 (208)
T 2iss_D          101 VILLAKRIKNY---SQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKD-----PFRAIFIRAPRIVETGKNVEILATY  172 (208)
T ss_dssp             HHHHEEEEC------CCCCCCEEEEEETTTTCSGGGCEEEEECCGGGCSS-----CEEEEESSCCEEEEECSSCEEEEEE
T ss_pred             HHHHHHHcCCC---CCCCccccceEEEecCCCcccccccCCcccccCCCC-----ceEEEEEeCcccccCCCCcEEEEEE
Confidence            99999999752   468999999999999888877666544456777663     6899999999999989999999987


Q ss_pred             C
Q 030035          161 P  161 (184)
Q Consensus       161 ~  161 (184)
                      +
T Consensus       173 d  173 (208)
T 2iss_D          173 D  173 (208)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.94  E-value=1.5e-26  Score=183.48  Aligned_cols=152  Identities=48%  Similarity=0.861  Sum_probs=128.9

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      |||+|+.++|+|.++.++|+++|++++.++..++++++|+||||||.++.++.+.+..++.+.|+++.++++|++|||+|
T Consensus         2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G   81 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG   81 (196)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEEccCCcHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHH
Confidence            79999999999999999999999999999877778899999999998777666666567789999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      +|+|++++++.   ..+++|++++++.++.+|++..+++.+..+++++      ..|+..+.|.+.+.++|++.+++|+.
T Consensus        82 ~q~l~~~~gg~---~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g------~~~~~~~~h~~~v~~~~~~~~v~a~~  152 (196)
T 2nv0_A           82 LIILAKEIAGS---DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLD------EPFTGVFIRAPHILEAGENVEVLSEH  152 (196)
T ss_dssp             HHHHSBCCC-------CCCCCSCEEEECCCSCTTTSEEEEEECCTTCS------SCEEEEEESCCEEEEECTTCEEEEEE
T ss_pred             HHHHHHHhcCC---CCCcccCCceeEeccCCCcccccccCCcccccCC------CceEEEEEecceecccCCCcEEEEEE
Confidence            99999998753   3578999999999988888876665544455543      47899999999999999999999998


Q ss_pred             C
Q 030035          161 P  161 (184)
Q Consensus       161 ~  161 (184)
                      +
T Consensus       153 d  153 (196)
T 2nv0_A          153 N  153 (196)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.94  E-value=3.3e-26  Score=180.25  Aligned_cols=151  Identities=49%  Similarity=0.775  Sum_probs=128.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC-CcEEEEch
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCA   79 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g-~PvlGIC~   79 (184)
                      |+|||++++|++.++.++|+++|+++++++.+++++++|+||||||++..++.+.++..+.+.|+++.+++ +|+||||+
T Consensus         3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~   82 (191)
T 2ywd_A            3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCA   82 (191)
T ss_dssp             CCEEEECSSSCHHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETH
T ss_pred             cEEEEEecCCchHHHHHHHHHCCCEEEEeCChhhhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECH
Confidence            46999999999999999999999999999887788899999999997666666664557889999999999 99999999


Q ss_pred             HHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEe
Q 030035           80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD  159 (184)
Q Consensus        80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~  159 (184)
                      |||+|+.++++.  +..+++|++++++.++.+|++..+++.+..++++       .++++.+.|+..+.++|++.+++|+
T Consensus        83 G~Q~l~~~~gg~--~~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~Hs~~v~~l~~~~~~~a~  153 (191)
T 2ywd_A           83 GAIWLAKEIVGY--PEQPRLGVLEAWVERNAFGRQVESFEEDLEVEGL-------GSFHGVFIRAPVFRRLGEGVEVLAR  153 (191)
T ss_dssp             HHHHHEEEETTC--TTCCCCCCEEEEEETTCSCCSSSEEEEEEEETTT-------EEEEEEEESCCEEEEECTTCEEEEE
T ss_pred             HHHHHHHHhCCC--CCCccccccceEEEcCCcCCccccccccccccCC-------CceeEEEEcccceeccCCCcEEEEE
Confidence            999999998741  2467899999999999889887666544344543       3688999999999889999999999


Q ss_pred             c
Q 030035          160 Y  160 (184)
Q Consensus       160 ~  160 (184)
                      .
T Consensus       154 ~  154 (191)
T 2ywd_A          154 L  154 (191)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=7.8e-26  Score=177.95  Aligned_cols=146  Identities=39%  Similarity=0.684  Sum_probs=123.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      |||+||.++|++.++.++|+++|+++++++.+++++++|+||||||+++.++.+.+..++.+.++   +.++|+||||+|
T Consensus         1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G   77 (186)
T 2ywj_A            1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAG   77 (186)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHH
T ss_pred             CEEEEEecCcchHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHH
Confidence            89999999999999999999999999999877778899999999998877766665556777766   679999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEec-CCCcEEEEe
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLAD  159 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~-~~~v~vLa~  159 (184)
                      ||+|+.+++.    ....+|++++++.++.+|++..++..+..++++       .+++..+.|.++|.++ |++.+++|+
T Consensus        78 ~Qll~~~~gg----~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~H~~~v~~l~~~~~~v~a~  146 (186)
T 2ywj_A           78 MVLLSKGTGI----NQILLELMDITVKRNAYGRQVDSFEKEIEFKDL-------GKVYGVFIRAPVVDKILSDDVEVIAR  146 (186)
T ss_dssp             HHHHSSCCSS----CCCCCCCSSEEEETTTTCSSSCCEEEEEEETTT-------EEEEEEESSCCEEEEECCTTCEEEEE
T ss_pred             HHHHHHHhCC----CcCccCCCceeEEeccCCCcccceecccccccC-------CcEEEEEEecceeeecCCCCeEEEEE
Confidence            9999999742    356799999999988888887666554444544       3688999999999999 999999999


Q ss_pred             c
Q 030035          160 Y  160 (184)
Q Consensus       160 ~  160 (184)
                      .
T Consensus       147 s  147 (186)
T 2ywj_A          147 D  147 (186)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.93  E-value=7.8e-26  Score=182.89  Aligned_cols=151  Identities=49%  Similarity=0.848  Sum_probs=128.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      |||+|+.+.|+|.+++++|++.|+++++++..++++++|+||||||.++.++.+.+...+.+.|++++++++||||||+|
T Consensus        24 ~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G  103 (219)
T 1q7r_A           24 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAG  103 (219)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred             CEEEEEeCCCCcHHHHHHHHHCCCEEEEECCHHHHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHH
Confidence            68999999999999999999999999999887778899999999998777666665556789999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      +|+|+.++++.   ..+++|++++++.++.+|++..++.....+++++      ..|+..+.|.+.|.++|++.+++|+.
T Consensus       104 ~QlL~~~~gg~---~~~~lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g------~~~~~~~~h~~~v~~l~~~~~v~a~s  174 (219)
T 1q7r_A          104 LILLAKRIVGY---DEPHLGLMDITVERNSFGRQRESFEAELSIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY  174 (219)
T ss_dssp             HHHHEEEEESS---CCCCCCCEEEEEECHHHHCCCCCEEEEEEETTTE------EEEEEEESSCCEEEEECTTCEEEEEE
T ss_pred             HHHHHHHhCCC---CcCCcCccceEEEecCCCccccceecCcccCCCC------CceEEEEEecceeeccCCCcEEEEEc
Confidence            99999998752   3578999999999888888766664433445543      46899999999999999999999997

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.89  E-value=6.9e-23  Score=162.88  Aligned_cols=146  Identities=21%  Similarity=0.270  Sum_probs=115.0

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCC-----CeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCC
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLG-----VKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G-----~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      |||+||.++ ||+.++.++|+++|     +++++++.+++ .++|+|||||| . .+.+.++.+ .++.++|++++++++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-~~~dglilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~   78 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-DLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER   78 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-SCCSEEEECCCSCSHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-cCCCEEEECCCCcHHHHHHHHHh-hCHHHHHHHHHHcCC
Confidence            899999987 79999999999999     99999988777 89999999995 3 344556654 357899999999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC---CCC-cceeEeeecCceEE
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE---GGP-ETFRGVFIRAPAVL  148 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~---~~~-~~~~a~firap~i~  148 (184)
                      |+||||+|||+|++++.+.  +...++++++.++.++..+          .+|+++|+.   ..+ +++.+.|.|++.|.
T Consensus        79 PilGIC~G~Qll~~~~g~~--G~~~~l~~~~g~v~~~~~~----------~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~  146 (201)
T 1gpw_B           79 YVVGVCLGMQLLFEESEEA--PGVKGLSLIEGNVVKLRSR----------RLPHMGWNEVIFKDTFPNGYYYFVHTYRAV  146 (201)
T ss_dssp             EEEEETHHHHTTSSEETTE--EEEECCCSSSEEEEECCCS----------SCSEEEEEEEEESSSSCCEEEEEEESEEEE
T ss_pred             eEEEEChhHHHHHHhhccC--CCCCCcceeeeEEEEcCCC----------CCCcccceeeEeccCCCCCeEEEECcceec
Confidence            9999999999999998632  2367899999998887432          123333331   112 36889999999998


Q ss_pred             ecCCCcEEEEecCC
Q 030035          149 DVGPDVDVLADYPV  162 (184)
Q Consensus       149 ~~~~~v~vLa~~~~  162 (184)
                      .+  +.+++|+.++
T Consensus       147 ~~--~~~vla~s~~  158 (201)
T 1gpw_B          147 CE--EEHVLGTTEY  158 (201)
T ss_dssp             EC--GGGEEEEEEE
T ss_pred             cC--CCEEEEEEcc
Confidence            77  6899998653

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.86  E-value=2.2e-22  Score=160.95  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=108.6

Q ss_pred             EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-chhH-HHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-ESTT-MARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~~~~-~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ||+|+.+ .||+.++.++|+++|++++++++++++.++|+|||||+ .+.. +..+.. .+   .++.+.+.++|+||||
T Consensus         4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l~~~D~lilPG~g~~~~~~~~~~~-~~---~i~~~~~~~~PvlGIC   79 (211)
T 4gud_A            4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTE-RD---LIELVKRVEKPLLGIC   79 (211)
T ss_dssp             CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHHHHCSEEEECCCSCHHHHHHHHHH-TT---CHHHHHHCCSCEEEET
T ss_pred             EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHHhCCCEEEECCCCCHHHHHHHHHh-cC---hHHHHHHcCCCEEEEc
Confidence            6999987 46889999999999999999999888999999999994 4333 333333 23   3555567899999999


Q ss_pred             hHHHHHHHhhhcccC---CCccccCcceeeeeecccCceeEEeeccccCCccc---cCCCCCcceeEeeecCceEEecCC
Q 030035           79 AGLIFLANKAVGQKL---GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA---SQEGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~---~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~---~~~~~~~~~~a~firap~i~~~~~  152 (184)
                      +|||||++++.+...   ....++|+++++|.|+.++++..++.....+....   .-.+.+..++.+|.|..++   ++
T Consensus        80 lG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v---~~  156 (211)
T 4gud_A           80 LGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQVKEGHPLFNGIEPDAYFYFVHSFAM---PV  156 (211)
T ss_dssp             HHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEECTTCGGGTTCCTTCCEEEEESEEC---CC
T ss_pred             hhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeeeeccChhhcCCCCCcEEEEEeeEEe---CC
Confidence            999999998765321   24678999999999998876543332211100000   0024456778889998764   45


Q ss_pred             CcEEEEecCC
Q 030035          153 DVDVLADYPV  162 (184)
Q Consensus       153 ~v~vLa~~~~  162 (184)
                      +.+++|+.++
T Consensus       157 ~~~~~a~~~~  166 (211)
T 4gud_A          157 GDYTIAQCEY  166 (211)
T ss_dssp             CTTEEEEEES
T ss_pred             CCeEEEEecC
Confidence            6677777654

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.84  E-value=1.8e-20  Score=149.08  Aligned_cols=151  Identities=19%  Similarity=0.215  Sum_probs=108.3

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-Cch-hHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GES-TTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G~~-~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |||+|+.++ ||+.++.++|+++|+++++++++++++++|+||||| |.. +.+.++.+ ..+.+.|+++++.++|+|||
T Consensus         3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PilGI   81 (200)
T 1ka9_H            3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI   81 (200)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred             cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHh-cCHHHHHHHHHHcCCeEEEE
Confidence            589999875 699999999999999999998877888999999999 543 33333332 35788999999999999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecc--cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF--FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~--~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      |+|+|+|++++.+.  +...+||+++.++.|+.  ..++....+..+.-. +.   +.++ +.++|.|++.+ .+++. +
T Consensus        82 C~G~Qll~~~~~~~--Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~~-l~---~~~~-~~~~~~Hs~~~-~~~~~-~  152 (200)
T 1ka9_H           82 CVGMQVLYEGSEEA--PGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGGA-FA---PLTG-RHFYFANSYYG-PLTPY-S  152 (200)
T ss_dssp             THHHHTTSSEETTS--TTCCCCCSSSSEEEECCSSSSSEEEEEECEECGG-GG---GGTT-CEEEEEESEEC-CCCTT-C
T ss_pred             cHHHHHHHHhcccc--CCcCCccccccEEEECCCCCCCceeEEEEEechh-hh---cCCC-CCEEEeccccc-CCCCC-c
Confidence            99999999997531  23788999999998875  111222111111101 21   2233 78899999999 66543 4


Q ss_pred             EEEecCC
Q 030035          156 VLADYPV  162 (184)
Q Consensus       156 vLa~~~~  162 (184)
                      + |+.++
T Consensus       153 v-a~s~~  158 (200)
T 1ka9_H          153 L-GKGEY  158 (200)
T ss_dssp             C-EEEEE
T ss_pred             E-EEEEe
Confidence            5 65543

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.79  E-value=2.9e-19  Score=162.34  Aligned_cols=150  Identities=24%  Similarity=0.323  Sum_probs=112.0

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCC--CCCCCEEEEcC-CchhH-HHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPG-GESTT-MARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~--l~~~DglIipG-G~~~~-~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |+|+|+.++ |++.++.++|+++|+++++++.+++  ++++|+||||| |.... +..+.+ .++.+.|++++++++|+|
T Consensus         5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~~~l~~~DglILpGgG~~~~~~~~l~~-~~~~~~i~~~~~~g~PiL   83 (555)
T 1jvn_A            5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN-RGFEKPIREYIESGKPIM   83 (555)
T ss_dssp             CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHH-TTCHHHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccccccccCCEEEECCCCchHhHhhhhhh-ccHHHHHHHHHHcCCcEE
Confidence            489999985 8999999999999999999987766  88999999999 55433 344433 467899999999999999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC---------CCCcceeEeeecCce
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE---------GGPETFRGVFIRAPA  146 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~---------~~~~~~~a~firap~  146 (184)
                      |||+|||+|+.++.+  ++...+||+++.++.|..  .+      ...+|++||+.         +.+..++++|.|+-.
T Consensus        84 GIC~G~QlL~~a~~e--gg~~~~Lg~lgg~v~~~~--~~------~~~~~~~G~~~v~~~~~L~~~l~~~~~~~~vHS~~  153 (555)
T 1jvn_A           84 GIXVGLQALFAGSVE--SPKSTGLNYIDFKLSRFD--DS------EKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFA  153 (555)
T ss_dssp             EEEHHHHTTEEEETT--BTTCCCCCSEEEEEEECC--TT------TSCSSEEEEECCCCCTTCCTTCCTTSCEEEEESEE
T ss_pred             EEchhhhhhhhhhhc--CCCccccCCCCcEEEECC--cC------CCCCccccceEEEEcCHHHhhCCCCceEEEEEEEE
Confidence            999999999998852  345789999999888742  11      22345555542         234445778876666


Q ss_pred             EEec-------CCCcEEEEecC
Q 030035          147 VLDV-------GPDVDVLADYP  161 (184)
Q Consensus       147 i~~~-------~~~v~vLa~~~  161 (184)
                      +..+       +++..++|+.+
T Consensus       154 ~~~i~~~~~~L~~g~~vlA~s~  175 (555)
T 1jvn_A          154 AILNSEKKKNLENDGWKIAKAK  175 (555)
T ss_dssp             CBCCHHHHHHHHHTTCEEEEEE
T ss_pred             EEecccccccCCCCCEEEEEEc
Confidence            5442       46678888755

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.78  E-value=3.9e-18  Score=135.18  Aligned_cols=143  Identities=18%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             CE-EEEEecCCCHHHH-HHHHHHCCCeEEEEcCCC----CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCC
Q 030035            1 MV-VGVLALQGSFNEH-IAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~-IgVl~~qG~~~~~-~~~L~~~G~~v~~v~~~~----~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      || |+|+...+.|... .++|+++|+++++++..+    +++  ++|+|||+||....... .+..-..+.|+++ +.++
T Consensus         1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~-~~~~~~~~~i~~~-~~~~   78 (195)
T 1qdl_B            1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYL-GKRT   78 (195)
T ss_dssp             CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHH-TTTS
T ss_pred             CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhh-hhhhHHHHHHHHh-cCCC
Confidence            77 9999998887764 589999999999987653    343  59999998875332211 1111234777774 7799


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCcee-EEeeccccCCccccCCCCCcceeEeeecCceEE
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQI-QSFEAELSVPALASQEGGPETFRGVFIRAPAVL  148 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv-~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~  148 (184)
                      |+||||+|||+|+.++..              ++.++   .+|+.. .++...-.-+-+   .+.++++.+.+.|++.|.
T Consensus        79 PvLGIC~G~QlL~~~~gg--------------~v~~~~~~~~g~~~~v~~~~~~~~~l~---~~~~~~~~v~~~H~~~v~  141 (195)
T 1qdl_B           79 PILGVCLGHQAIGYAFGA--------------KIRRARKVFHGKISNIILVNNSPLSLY---YGIAKEFKATRYHSLVVD  141 (195)
T ss_dssp             CEEEETHHHHHHHHHTTC--------------EEEEEEEEEEEEEEEEEECCSSCCSTT---TTCCSEEEEEEEEEEEEE
T ss_pred             cEEEEehHHHHHHHHhCC--------------EEeccCCCcCCCceEEEECCCCHhHHH---hcCCCceEEeccccchhh
Confidence            999999999999999753              22222   233221 122111000111   234567999999999999


Q ss_pred             ecCCCcEEEEec-CC
Q 030035          149 DVGPDVDVLADY-PV  162 (184)
Q Consensus       149 ~~~~~v~vLa~~-~~  162 (184)
                      ++|++++++|+. ++
T Consensus       142 ~l~~~~~vla~s~~~  156 (195)
T 1qdl_B          142 EVHRPLIVDAISAED  156 (195)
T ss_dssp             CCCTTEEEEEEESSS
T ss_pred             hCCCCcEEEEEECCC
Confidence            999999999998 54

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.74  E-value=8.1e-18  Score=135.34  Aligned_cols=142  Identities=17%  Similarity=0.220  Sum_probs=98.0

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCCCCCEEEEcCC-chhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~~~DglIipGG-~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      |||.++...++|.. +.++|+++|+++++++.   ++++.++|+|||||| +++.++.+.    .....+...+.++|+|
T Consensus        14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~p~~~~~~~~----~~~l~~~~~~~~~PiL   89 (212)
T 2a9v_A           14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK----LGSVGKYIDDHNYPIL   89 (212)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG----HHHHHHHHHHCCSCEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCCCCCCccccc----chhHHHHHHhCCCCEE
Confidence            58999988777654 66899999999888864   456778999999999 665543211    1111233346799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      |||+|||+|+.+++..    ..       +..++.+|.+..++...-  +-+   .+.++++.+.+.|.+.|.++|++++
T Consensus        90 GIC~G~Qll~~~lGg~----v~-------~~~~~~~G~~~v~~~~~~--~l~---~~~~~~~~v~~~H~~~v~~l~~~~~  153 (212)
T 2a9v_A           90 GICVGAQFIALHFGAS----VV-------KAKHPEFGKTKVSVMHSE--NIF---GGLPSEITVWENHNDEIINLPDDFT  153 (212)
T ss_dssp             EETHHHHHHHHHTTCE----EE-------EEEEEEEEEEEEEESCCC--GGG---TTCCSEEEEEEEEEEEEESCCTTEE
T ss_pred             EEChHHHHHHHHhCCE----EE-------cCCCcccCceeeEECCCC--hhH---hcCCCceEEEeEhhhhHhhCCCCcE
Confidence            9999999999997431    10       112234565444443210  111   1334578899999999999999999


Q ss_pred             EEEecCC
Q 030035          156 VLADYPV  162 (184)
Q Consensus       156 vLa~~~~  162 (184)
                      ++|+.++
T Consensus       154 vlA~s~d  160 (212)
T 2a9v_A          154 LAASSAT  160 (212)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9999875

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=99.73  E-value=8.1e-19  Score=143.07  Aligned_cols=149  Identities=14%  Similarity=0.160  Sum_probs=104.9

Q ss_pred             EEEEEecC-------CCHHHHHHHHHHCCCeEEEEcCC----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035            2 VVGVLALQ-------GSFNEHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         2 ~IgVl~~q-------G~~~~~~~~L~~~G~~v~~v~~~----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~   70 (184)
                      ||+|+...       |+..++.++|+++|++++.++..    ++|.++|+|++|||....+-++.+..++.+.|++++++
T Consensus        33 ~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~  112 (229)
T 1fy2_A           33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKR  112 (229)
T ss_dssp             EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHc
Confidence            78888765       56777889999999999888633    45778999999999877765555557899999999999


Q ss_pred             CCcEEEEchHHHHHHHhhhccc------CCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecC
Q 030035           71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA  144 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~------~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~fira  144 (184)
                      |+|++|||+|||+|++.+....      .+..++||+++..+.                 ||+..   .+.+.++.|+|+
T Consensus       113 G~p~~G~sAG~~~l~~~~~~~~d~~~~~~~~~~gLgli~~~v~-----------------~H~~~---~~~~~h~~~~R~  172 (229)
T 1fy2_A          113 GALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQIN-----------------PHFTN---ALPEGHKGETRE  172 (229)
T ss_dssp             TCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEE-----------------CSCCC------------CHH
T ss_pred             CCEEEEECHHHHhhcccceecCCCCcccCCcCCcCCCCCceec-----------------CCcCC---CCCccccchhHH
Confidence            9999999999999999875420      012455666654433                 34320   011225678999


Q ss_pred             ceEEecC---CCcEEEEecCCCCcccccC
Q 030035          145 PAVLDVG---PDVDVLADYPVPSNKVLYS  170 (184)
Q Consensus       145 p~i~~~~---~~v~vLa~~~~~~~~~~~~  170 (184)
                      |.+.+..   ++++++|..++.......+
T Consensus       173 ~~i~~~~~~~~~~~~lai~e~~av~v~~~  201 (229)
T 1fy2_A          173 QRIRELLVVAPELTVIGLPEGNWIQVSNG  201 (229)
T ss_dssp             HHHHHHHHHSTTCEEEECCTTCEEEECSS
T ss_pred             HHHHHHHhhCCCCeEEEEECCEEEEEECC
Confidence            9988764   3799999988876655433

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.72  E-value=4.3e-17  Score=132.93  Aligned_cols=148  Identities=14%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             CEEEEEecCC--CHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhH---HHHHHhcC--ChHHHHHHH
Q 030035            1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT---MARLAEYH--NLFPALREF   67 (184)
Q Consensus         1 m~IgVl~~qG--~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~---~~~l~~~~--~l~~~l~~~   67 (184)
                      |||.||.-..  ++..+.+.+++.|+++.+++.      ++++.++|+|||+||+.+.   .....+..  ...+.|+++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~   80 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA   80 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence            8888876432  456677889999999988852      3456789999999997552   12222211  146789999


Q ss_pred             HHcCCcEEEEchHHHHHHHhhhcccCC-CccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCce
Q 030035           68 VKMGKPVWGTCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA  146 (184)
Q Consensus        68 ~~~g~PvlGIC~G~QlLa~~~~~~~~~-~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~  146 (184)
                      ++.++||||||+|||+|+.+++..... ..+.+|+.++++..+..           .-|-+   .+.+..+.+.+.|...
T Consensus        81 ~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~~~v~~~~~~~-----------~~~l~---~~~~~~~~v~~~H~~~  146 (236)
T 3l7n_A           81 AKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGNYLISLTEAGK-----------MDSYL---SDFSDDLLVGHWHGDM  146 (236)
T ss_dssp             HHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEEEEEEECTTGG-----------GCGGG---TTSCSEEEEEEEEEEE
T ss_pred             HHcCCCEEEEchHHHHHHHHhCCEEecCCCceeeeEEEEEccCcc-----------cChHH---hcCCCCcEEEEecCCc
Confidence            999999999999999999998542110 12334444433322100           00111   1344578999999975


Q ss_pred             EEecCCCcEEEEecCCC
Q 030035          147 VLDVGPDVDVLADYPVP  163 (184)
Q Consensus       147 i~~~~~~v~vLa~~~~~  163 (184)
                       .++|++.++||+.++-
T Consensus       147 -~~lp~~~~vla~s~~~  162 (236)
T 3l7n_A          147 -PGLPDKAQVLAISQGC  162 (236)
T ss_dssp             -CCCCTTCEEEEECSSC
T ss_pred             -ccCCChheEEEECCCC
Confidence             7789999999998653

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.72  E-value=3.2e-17  Score=134.13  Aligned_cols=132  Identities=17%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHH-----HHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035           10 GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTM-----ARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus        10 G~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~-----~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      +|...+.+.|++.|+++.+++.      ++++.++|+||||||....+     ..+.   ...+.|+++++.++|+||||
T Consensus        24 ~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~---~~~~~i~~~~~~~~PiLGIC  100 (239)
T 1o1y_A           24 EDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK---YEFQLIEEILKKEIPFLGIC  100 (239)
T ss_dssp             SSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH---HHHHHHHHHHHHTCCEEEET
T ss_pred             CCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH---HHHHHHHHHHHCCCCEEEEc
Confidence            3667788899999999886642      23456899999999864332     2222   25778999988899999999


Q ss_pred             hHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecccc--CCccccCCCCCcceeEeeecCceEEecCCCcEE
Q 030035           79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELS--VPALASQEGGPETFRGVFIRAPAVLDVGPDVDV  156 (184)
Q Consensus        79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~--~~~~~~~~~~~~~~~a~firap~i~~~~~~v~v  156 (184)
                      +|||+|+.+++              .++.++..|.+...++....  -+-+   .+.++++.+.+.|...+ ++|++.++
T Consensus       101 ~G~QlL~~alG--------------G~v~~~~~g~~~G~~~v~~~~~~~l~---~~~~~~~~~~~~H~~~v-~lp~~~~v  162 (239)
T 1o1y_A          101 LGSQMLAKVLG--------------ASVYRGKNGEEIGWYFVEKVSDNKFF---REFPDRLRVFQWHGDTF-DLPRRATR  162 (239)
T ss_dssp             HHHHHHHHHTT--------------CCEEECTTCCEEEEEEEEECCCCGGG---TTSCSEEEEEEEESEEE-CCCTTCEE
T ss_pred             hhHHHHHHHcC--------------CeEecCCCCCccccEEEEECCCCchH---HhCCCCceeEeecCCcc-ccCCCCEE
Confidence            99999999974              34555555555555433211  0111   23445789999999988 88999999


Q ss_pred             EEecCC
Q 030035          157 LADYPV  162 (184)
Q Consensus       157 La~~~~  162 (184)
                      +|+.++
T Consensus       163 lA~s~~  168 (239)
T 1o1y_A          163 VFTSEK  168 (239)
T ss_dssp             EEECSS
T ss_pred             EEEcCC
Confidence            999865

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.72  E-value=4.6e-17  Score=128.07  Aligned_cols=138  Identities=20%  Similarity=0.318  Sum_probs=96.2

Q ss_pred             CEEEEEecCCCH-HHHHHHHHHCCCeEEEEcCCC---CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQGSF-NEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~-~~~~~~L~~~G~~v~~v~~~~---~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      |.|+|+.+.+.+ ..+.++|+++|+++++++..+   ++.  ++|+||||||. .. ..   .....+.|+++.+.++|+
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~-~~---~~~~~~~i~~~~~~~~Pi   75 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SL-EN---TGNCEKVLEHYDEFNVPI   75 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CT-TC---CTTHHHHHHTGGGTCSCE
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-Ch-hh---hhhHHHHHHHHhhCCCeE
Confidence            679999988765 456799999999999987554   333  59999999996 22 11   122467788776789999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG  151 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~  151 (184)
                      ||||+|+|+|+.++...              +.+   ..+|..-..+...  -+-+   .+.++++++...|.+.+.++|
T Consensus        76 lGIC~G~Q~l~~~~gg~--------------v~~~~~~~~G~~~~~~~~~--~~l~---~~~~~~~~~~~~h~~~v~~l~  136 (189)
T 1wl8_A           76 LGICLGHQLIAKFFGGK--------------VGRGEKAEYSLVEIEIIDE--XEIF---KGLPKRLKVWESHMDEVKELP  136 (189)
T ss_dssp             EEETHHHHHHHHHHTCE--------------EEECSCCSCEEEEEEESCC----CC---TTSCSEEEEEECCSEEEEECC
T ss_pred             EEEcHHHHHHHHHhCCc--------------eecCCCcccCceeEEEecC--chHH---hCCCCceEEEEEeeeehhhCC
Confidence            99999999999998532              111   1233221112110  0111   123456888899999999999


Q ss_pred             CCcEEEEecCC
Q 030035          152 PDVDVLADYPV  162 (184)
Q Consensus       152 ~~v~vLa~~~~  162 (184)
                      ++.+++|+.++
T Consensus       137 ~~~~vla~s~~  147 (189)
T 1wl8_A          137 PKFKILARSET  147 (189)
T ss_dssp             TTEEEEEEESS
T ss_pred             CCcEEEEEcCC
Confidence            99999999875

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.71  E-value=2.3e-16  Score=125.56  Aligned_cols=100  Identities=24%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHH----HHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA----RLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~----~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      |||+||.+.+..  .++.++|+++|+++++++..+++.++|+||||||.+....    .+.+...+.++|+++.+.++||
T Consensus         3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pi   82 (213)
T 3d54_D            3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLI   82 (213)
T ss_dssp             CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEE
T ss_pred             cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCCCcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEE
Confidence            489999998864  5788999999999999987667889999999998643211    1333346789999999899999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeecccC
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG  112 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G  112 (184)
                      +|||+|+|+|+.+            |+++.++.+|..+
T Consensus        83 lgIC~G~qlLa~a------------Gll~g~v~~~~~~  108 (213)
T 3d54_D           83 MGICNGFQILIEM------------GLLKGALLQNSSG  108 (213)
T ss_dssp             EECHHHHHHHHHH------------TSSCSEEECCSSS
T ss_pred             EEECHHHHHHHHc------------CCCCCCeecCCCC
Confidence            9999999999997            4555677776543

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.71  E-value=2.6e-16  Score=124.29  Aligned_cols=140  Identities=16%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             CEEEEEecCCCHHHH-HHHHHHCCCeEEEEcCCCC---CC------CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035            1 MVVGVLALQGSFNEH-IAALKRLGVKGVEIRKPDQ---LQ------NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         1 m~IgVl~~qG~~~~~-~~~L~~~G~~v~~v~~~~~---l~------~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~   70 (184)
                      +||+|+...+.|... .++|+++|+++++++...+   +.      +.|++||+||.++..+     .++...+.++++.
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~-----~~~~~~l~~~~~~   75 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE-----AGCMPELLTRLRG   75 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG-----STTHHHHHHHHBT
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh-----CchHHHHHHHHhc
Confidence            589999999988664 6999999999999976532   21      3446888887655432     2334444455678


Q ss_pred             CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEec
Q 030035           71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV  150 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~  150 (184)
                      ++|+||||+|||+|+.+++....    .+.       +..+|+........  -+-+   .+.++++.+.|.|+++|.++
T Consensus        76 ~~PilGIC~G~Qll~~~~Gg~v~----~~~-------~~~~g~~~~~~~~~--~~l~---~~~~~~~~v~~~H~~~v~~l  139 (192)
T 1i1q_B           76 KLPIIGICLGHQAIVEAYGGYVG----QAG-------EILHGKATSIEHDG--QAMF---AGLANPLPVARYHSLVGSNV  139 (192)
T ss_dssp             TBCEEEETHHHHHHHHHTSCCCC----C----------CCSSEEEEEEECC--CGGG---TTSCSSEEEEECCC---CCC
T ss_pred             CCCEEEECcChHHHHHHhCCEEE----eCC-------CcEecceeEEecCC--ChHH---hcCCCCcEEEechhhHhhhC
Confidence            99999999999999999853211    010       12345333222111  0111   13346799999999999999


Q ss_pred             CCCcEEEEecC
Q 030035          151 GPDVDVLADYP  161 (184)
Q Consensus       151 ~~~v~vLa~~~  161 (184)
                      |++.+++|+++
T Consensus       140 p~~~~v~a~~~  150 (192)
T 1i1q_B          140 PAGLTINAHFN  150 (192)
T ss_dssp             CTTCEEEEEET
T ss_pred             CCccEEEECCC
Confidence            99999999765

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.71  E-value=6.3e-17  Score=147.00  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             CEEEEEecCCCHH-HHHHHHHHCCCeEEEEcC---CCCCC--CCCEEEEcCCchhHHHHHHhcCChHH-HHHHHHHcCCc
Q 030035            1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFP-ALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~~-~~~~~L~~~G~~v~~v~~---~~~l~--~~DglIipGG~~~~~~~l~~~~~l~~-~l~~~~~~g~P   73 (184)
                      .||.||.+..+|. .+.++|+++|+.+.+++.   .+++.  ++|+||||||+++.++.-  ...+.. .++.+.+.++|
T Consensus         8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~--~~~~~~~l~~~a~~~g~P   85 (556)
T 3uow_A            8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAG--SPHLKKEVFEYFLEKKIP   85 (556)
T ss_dssp             CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTT--CCCCCHHHHHHHHHTTCC
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccC--CcchhHHHHHHhhhcCCC
Confidence            3799999977665 577999999999988863   34454  689999999986654321  112333 34445667999


Q ss_pred             EEEEchHHHHHHHhhhcccCC-CccccCcceeeeeecc---cCceeEEeeccccCCcccc-----------C--CCC-Cc
Q 030035           74 VWGTCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALAS-----------Q--EGG-PE  135 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~~~~~-~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~-----------~--~~~-~~  135 (184)
                      +||||+|||+|+++++..... .....|..++++..+.   ....+..|+..  -++++|           .  .+. ++
T Consensus        86 vLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~--~~~mg~~~n~~~~~~~~~Lf~gl~~~  163 (556)
T 3uow_A           86 IFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDS--SSAMDLYSNYKLMNETCCLFENIKSD  163 (556)
T ss_dssp             EEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCSGGGGC-----CCHHHHHTTSCCCC--CGGGTTCCSS
T ss_pred             EEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccccceeccccc--ccccccccccccccccchhhcccccC
Confidence            999999999999987532110 1122333333332221   00111111111  145555           1  244 66


Q ss_pred             ceeEeeecCceEEecCCCcEEEEecCC
Q 030035          136 TFRGVFIRAPAVLDVGPDVDVLADYPV  162 (184)
Q Consensus       136 ~~~a~firap~i~~~~~~v~vLa~~~~  162 (184)
                      ++.++|.|++.|..+|++++++|+.++
T Consensus       164 ~~~v~~~H~d~V~~lp~g~~vlA~s~~  190 (556)
T 3uow_A          164 ITTVWMNHNDEVTKIPENFYLVSSSEN  190 (556)
T ss_dssp             EEEEEEEEEEEEEECCTTCEEEEEETT
T ss_pred             ceEEEEEccceeeccCCCcEEEEEeCC
Confidence            899999999999999999999999876

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.70  E-value=4.4e-17  Score=134.57  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=95.7

Q ss_pred             CEEEEEec--CCCHHHHHHHHHHCCCeEEEEc------CCCCCCCCCEEEEcCCchhHH---HHHHhcCChHHHHHHHHH
Q 030035            1 MVVGVLAL--QGSFNEHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGESTTM---ARLAEYHNLFPALREFVK   69 (184)
Q Consensus         1 m~IgVl~~--qG~~~~~~~~L~~~G~~v~~v~------~~~~l~~~DglIipGG~~~~~---~~l~~~~~l~~~l~~~~~   69 (184)
                      |||.||.-  ..+...+.+.|++.|+++.+++      .+++++++|+||||||..+..   ..+.   ...++|+++++
T Consensus         4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~---~~~~~i~~~~~   80 (250)
T 3m3p_A            4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMP---TLLALIRDAVA   80 (250)
T ss_dssp             CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHH---HHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccchHHH---HHHHHHHHHHH
Confidence            35766642  2466778889999999998886      234567899999999975432   2232   25678898888


Q ss_pred             cCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecccc-----CCccccCCCCCcceeEeeecC
Q 030035           70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELS-----VPALASQEGGPETFRGVFIRA  144 (184)
Q Consensus        70 ~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~-----~~~~~~~~~~~~~~~a~fira  144 (184)
                      .++|+||||+|+|+|+.+++.              +|.++.. .+++.+...+.     -|-+    +.|+.+.+.+.|.
T Consensus        81 ~~~PvlGIC~G~Qll~~~lGG--------------~V~~~~~-~e~G~~~v~~~~~~~~~~l~----g~~~~~~v~~~H~  141 (250)
T 3m3p_A           81 QRVPVIGHCLGGQLLAKAMGG--------------EVTDSPH-AEIGWVRAWPQHVPQALEWL----GTWDELELFEWHY  141 (250)
T ss_dssp             HTCCEEEETHHHHHHHHHTTC--------------CEEEEEE-EEEEEEEEEECSSHHHHHHH----SCSSCEEEEEEEE
T ss_pred             cCCCEEEECHHHHHHHHHhCC--------------EEEeCCC-CceeeEEEEEecCCCCcccc----cCCCccEEEEEcc
Confidence            999999999999999999753              2333211 11111111111     0111    2345789999999


Q ss_pred             ceEEecCCCcEEEEecCC
Q 030035          145 PAVLDVGPDVDVLADYPV  162 (184)
Q Consensus       145 p~i~~~~~~v~vLa~~~~  162 (184)
                      ..+ ++|++.++||+.++
T Consensus       142 ~~v-~lp~~~~vlA~s~~  158 (250)
T 3m3p_A          142 QTF-SIPPGAVHILRSEH  158 (250)
T ss_dssp             EEE-CCCTTEEEEEEETT
T ss_pred             cee-ecCCCCEEEEEeCC
Confidence            998 89999999999876

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.68  E-value=1.1e-16  Score=144.45  Aligned_cols=142  Identities=18%  Similarity=0.265  Sum_probs=94.2

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEc---CCCCCCC--CCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIR---KPDQLQN--VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~---~~~~l~~--~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||+||.+.+.|.. +.++|+++|+.+.++.   +.+++.+  +|+||||||+++.++.     +.....+++.+.|+|||
T Consensus        12 ~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~-----~~~~~~~~~~~~~~PvL   86 (527)
T 3tqi_A           12 RILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLS-----HTLRAPAFIFEIGCPVL   86 (527)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC--------------CCCSTTTSSSCEE
T ss_pred             eEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccC-----CChhhHHHHHhcCCCEE
Confidence            7999999887764 6699999999988874   3455654  4999999998765432     11222344456799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeeccc-cCCccccC--CCCCcceeEeeecCceEEe
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAEL-SVPALASQ--EGGPETFRGVFIRAPAVLD  149 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~-~~~~~~~~--~~~~~~~~a~firap~i~~  149 (184)
                      |||+|||+|+.++++              +|.+   ..||++...+...- .+.++...  ......+.++|.|.+.|.+
T Consensus        87 GIC~G~Qlla~~lGG--------------~V~~~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~  152 (527)
T 3tqi_A           87 GICYGMQTMAYQLGG--------------KVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE  152 (527)
T ss_dssp             EETHHHHHHHHHSSS--------------CBC-----CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS
T ss_pred             EEChHHHHHHHHcCC--------------eEEeCCCccccceEEEEcCCChhhcCCccccccccccceEEEEEcccchhc
Confidence            999999999999753              2222   25666555554321 12222100  0001168999999999999


Q ss_pred             cCCCcEEEEecCC
Q 030035          150 VGPDVDVLADYPV  162 (184)
Q Consensus       150 ~~~~v~vLa~~~~  162 (184)
                      +|++.+++|+.++
T Consensus       153 lp~g~~v~A~s~~  165 (527)
T 3tqi_A          153 LPPGFEATACTDN  165 (527)
T ss_dssp             CCTTCEEEEEETT
T ss_pred             cCCCCEEEEEeCC
Confidence            9999999999865

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.68  E-value=9.4e-17  Score=129.84  Aligned_cols=139  Identities=19%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             EEEEEecCCCHH-HHHHHHHHCCCeEEEEcCCC---CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~-~~~~~L~~~G~~v~~v~~~~---~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||+||.+++.|. ++.++|+++|+++++++...   ++  .++|+||||||.++.+..  ....+.   +++.+.++|+|
T Consensus        26 ~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~--~~~~~~---~~~~~~~~Pil  100 (218)
T 2vpi_A           26 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAE--DAPWFD---PAIFTIGKPVL  100 (218)
T ss_dssp             CEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC-----------CCCCC---GGGGTSSCCEE
T ss_pred             eEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccc--cchhHH---HHHHHcCCCEE
Confidence            799999987665 46699999999999886432   23  359999999997655422  111222   23346799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      |||+|||+|+.++..              ++.|+.. ++...++..+. +.-.+-.+.++++.+.+.|.+.|.++|++.+
T Consensus       101 GIC~G~Qll~~~~GG--------------~v~~~~~-~~~G~~~v~~~-~~~~l~~~l~~~~~v~~~H~~~v~~l~~~~~  164 (218)
T 2vpi_A          101 GICYGMQMMNKVFGG--------------TVHKKSV-REDGVFNISVD-NTCSLFRGLQKEEVVLLTHGDSVDKVADGFK  164 (218)
T ss_dssp             EETHHHHHHHHHTTC--------------CEEEEEE-CSCEEEEEEEC-TTSGGGTTCCSEEEEEECSEEEESSCCTTCE
T ss_pred             EEcHHHHHHHHHhCC--------------ceEeCCC-CcccEEEEEEc-cCChhHhcCCCCcEEeehhhhHhhhcCCCCE
Confidence            999999999998743              2333221 12222222111 0000002344578899999999999999999


Q ss_pred             EEEecC
Q 030035          156 VLADYP  161 (184)
Q Consensus       156 vLa~~~  161 (184)
                      ++|+.+
T Consensus       165 vlA~s~  170 (218)
T 2vpi_A          165 VVARSG  170 (218)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            999974

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.64  E-value=5.1e-16  Score=140.12  Aligned_cols=139  Identities=19%  Similarity=0.248  Sum_probs=95.0

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      +||+||.+.+.|.. +.++|+++|+.+.+++.   .+++.  ++|+||||||+++.++...  ..+.   +++.+.|+||
T Consensus         8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~--~~~~---~~~~~~g~Pv   82 (525)
T 1gpm_A            8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENS--PRAP---QYVFEAGVPV   82 (525)
T ss_dssp             SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTC--CCCC---GGGGTSSSCE
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCC--cchH---HHHHHCCCCE
Confidence            47999999988876 55999999999888853   23344  4599999999876654321  1222   3344679999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeeccccCCccccCCCCCc--------ceeEeeec
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELSVPALASQEGGPE--------TFRGVFIR  143 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~~~~~~~~~~~~~~--------~~~a~fir  143 (184)
                      ||||+|||+|+.++++.              |.+   ..||..--.+... + +-+   .+.+.        .+.+++.|
T Consensus        83 LGIC~G~Qlla~~~GG~--------------V~~~~~~e~G~~~v~~~~~-~-~L~---~~l~~~~~~~~~~~~~v~~~H  143 (525)
T 1gpm_A           83 FGVCYGMQTMAMQLGGH--------------VEASNEREFGYAQVEVVND-S-ALV---RGIEDALTADGKPLLDVWMSH  143 (525)
T ss_dssp             EEETHHHHHHHHHHTCE--------------EECCSSCEEEEEEEEECSC-C-TTT---TTCCSEECTTSCEEEEEEEEE
T ss_pred             EEEChHHHHHHHHcCCE--------------EEeCCCcccceEEEEeCCC-C-Hhh---ccCccccccccccceEEEEEc
Confidence            99999999999998532              222   1334322222111 0 111   12233        68999999


Q ss_pred             CceEEecCCCcEEEEecCCC
Q 030035          144 APAVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       144 ap~i~~~~~~v~vLa~~~~~  163 (184)
                      .+.|.++|++.+++|+.++-
T Consensus       144 ~~~V~~lp~g~~v~A~s~~~  163 (525)
T 1gpm_A          144 GDKVTAIPSDFITVASTESC  163 (525)
T ss_dssp             CSEEEECCTTCEEEEECSSC
T ss_pred             cceeeeCCCCCEEEEECCCC
Confidence            99999999999999998763

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.63  E-value=5.6e-15  Score=121.72  Aligned_cols=141  Identities=15%  Similarity=0.244  Sum_probs=92.8

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCC------CCCCCEEEEcCCch---hHHH-----------HHHhcCChHHHHHHHHHcCC
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQ------LQNVSSLIIPGGES---TTMA-----------RLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~------l~~~DglIipGG~~---~~~~-----------~l~~~~~l~~~l~~~~~~g~   72 (184)
                      .+++++++++|+.++++....+      ++++|+||||||.+   ..+.           ..++ ....+.|+++++.++
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd-~~~~~lir~a~~~~~  109 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRD-SYEIALVRAALDAGK  109 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHH-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhh-HHHHHHHHHHHHcCC
Confidence            4578899999999998864332      46899999999943   2211           1111 014678899999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceee-eee-----cccCceeEEeecc-ccCCccccCCCCCcceeEeeecCc
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCT-VHR-----NFFGSQIQSFEAE-LSVPALASQEGGPETFRGVFIRAP  145 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~-v~r-----n~~Grqv~sf~~~-~~~~~~~~~~~~~~~~~a~firap  145 (184)
                      |+||||+|||+|+.+++..   ..+.++..... +.+     -.+|.+..++... ..+.      ..++.+.+...|.+
T Consensus       110 PiLGIC~G~Qll~~a~Gg~---v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~s~l~~------~~~~~~~v~~~H~~  180 (254)
T 3fij_A          110 PIFAICRGMQLVNVALGGT---LYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAK------HHPNKKLVNSLHHQ  180 (254)
T ss_dssp             CEEEETHHHHHHHHHTTCC---EESSGGGSSSCCCCCBCCSCTTSCCEEEEECTTSSGGG------TCCTTEEECCBCSC
T ss_pred             CEEEECHHHHHHHHHhCCc---eecccccccCccccccCCCCCccceEEEEeCCCChHHH------hcCCcEEEEEeccc
Confidence            9999999999999997532   22333332211 111     1245444444321 1111      22346788889999


Q ss_pred             eEEecCCCcEEEEecCCC
Q 030035          146 AVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       146 ~i~~~~~~v~vLa~~~~~  163 (184)
                      .|.+++++.+++|+.++-
T Consensus       181 ~v~~l~~g~~v~a~s~dg  198 (254)
T 3fij_A          181 FIKKLAPSFKVTARTADG  198 (254)
T ss_dssp             EESSCCSSEEEEEEETTC
T ss_pred             hhhccCCCcEEEEEeCCC
Confidence            999999999999998753

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.60  E-value=9.6e-16  Score=137.63  Aligned_cols=136  Identities=21%  Similarity=0.276  Sum_probs=93.2

Q ss_pred             EEEEecCCCHH-HHHHHHHHCCCeEEEEcC---CCCCCC--CCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            3 VGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQN--VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         3 IgVl~~qG~~~-~~~~~L~~~G~~v~~v~~---~~~l~~--~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      |.||.+.+.|. .+.++++++|+.+.++..   .+++.+  +|+||||||+++.++....  .+.   +++.+.|+|+||
T Consensus         2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~~--~~~---~~~~~~~~PvLG   76 (503)
T 2ywb_A            2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP--RPD---PRLFSSGLPLLG   76 (503)
T ss_dssp             EEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCC--CCC---GGGGCSSCCEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCCc--chH---HHHHhCCCCEEE
Confidence            89999988776 467999999998888743   233444  4999999998766532211  122   334467999999


Q ss_pred             EchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCC
Q 030035           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~  153 (184)
                      ||+|||+|+.++++              +|.+   ..||..--.+..+   +-+   .+.++.+.+++.|.+.|.++|++
T Consensus        77 IC~G~Qlla~~~GG--------------~v~~~~~~e~G~~~v~~~~~---~l~---~~~~~~~~v~~~H~~~v~~lp~g  136 (503)
T 2ywb_A           77 ICYGMQLLAQELGG--------------RVERAGRAEYGKALLTRHEG---PLF---RGLEGEVQVWMSHQDAVTAPPPG  136 (503)
T ss_dssp             ETHHHHHHHHTTTC--------------EEECC---CEEEEECSEECS---GGG---TTCCSCCEEEEECSCEEEECCTT
T ss_pred             ECHHHHHHHHHhCC--------------eEeeCCCCccceEEEEecCc---HHh---hcCCCccEEEEECCCccccCCCC
Confidence            99999999999853              2222   1344322222111   111   13345688999999999999999


Q ss_pred             cEEEEecCCC
Q 030035          154 VDVLADYPVP  163 (184)
Q Consensus       154 v~vLa~~~~~  163 (184)
                      .+++|+.++-
T Consensus       137 ~~v~A~s~~~  146 (503)
T 2ywb_A          137 WRVVAETEEN  146 (503)
T ss_dssp             CEEEEECSSC
T ss_pred             CEEEEEECCC
Confidence            9999998763

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.57  E-value=2.2e-15  Score=139.92  Aligned_cols=140  Identities=19%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             EEEEEecCCCHHHH-HHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFNEH-IAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~~~-~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||+||.++++|..+ .++|+++|+.+.+++..   +++  .++||||||||+++.++.-.  ..+.   ++..+.|+|||
T Consensus        31 ~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~--~~~~---~~i~~~g~PvL  105 (697)
T 2vxo_A           31 AVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA--PWFD---PAIFTIGKPVL  105 (697)
T ss_dssp             CEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------C--CCCC---GGGTTSSCCEE
T ss_pred             EEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccc--hhHH---HHHHhCCCCEE
Confidence            69999999999885 48999999999888643   233  47899999999876653211  1122   23346799999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD  155 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~  155 (184)
                      |||+|||+|+.++++..    ..       ..++.||++.-++...-  +-+   .+.++++.+++.|.+.|.++|++.+
T Consensus       106 GIC~G~QlLa~~lGG~v----~~-------~~~~e~G~~~v~~~~~~--~Lf---~~l~~~~~v~~~H~~~V~~lp~g~~  169 (697)
T 2vxo_A          106 GICYGMQMMNKVFGGTV----HK-------KSVREDGVFNISVDNTC--SLF---RGLQKEEVVLLTHGDSVDKVADGFK  169 (697)
T ss_dssp             EEEHHHHHHHHHTTCCB----CC--------------CEEEEECTTS--GGG---TTCCSEEEECCCSSCCBSSCCTTCE
T ss_pred             EECHHHHHHHHHhCCeE----ee-------cCCCccceEEEEecCCC--hhh---hcCCccCcceeecccceecCCCCeE
Confidence            99999999999985421    11       12346776655554221  111   1344578999999999999999999


Q ss_pred             EEEecCC
Q 030035          156 VLADYPV  162 (184)
Q Consensus       156 vLa~~~~  162 (184)
                      ++|+.++
T Consensus       170 vlA~s~~  176 (697)
T 2vxo_A          170 VVARSGN  176 (697)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999854

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.56  E-value=3e-14  Score=124.02  Aligned_cols=133  Identities=15%  Similarity=0.214  Sum_probs=90.2

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      +||+|+.+ |.-.++.++|+++|+++++++..   +++  .++|+|||+||+++....    ....+.|++++++++|+|
T Consensus       191 ~~V~viD~-G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~----~~~~~~Ir~~~~~~~PIL  265 (379)
T 1a9x_B          191 FHVVAYDF-GAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC----DYAITAIQKFLETDIPVF  265 (379)
T ss_dssp             EEEEEEES-SCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC----HHHHHHHHHHTTSCCCEE
T ss_pred             CEEEEEEC-CChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH----HHHHHHHHHHHHcCCCEE
Confidence            37899998 66677999999999999988632   222  369999999997544211    124678898888899999


Q ss_pred             EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe--cCCC
Q 030035           76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD--VGPD  153 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~--~~~~  153 (184)
                      |||+|||||+.+++.              ++.++.||.+-......    ++..  +  .-+-....|...|..  +|++
T Consensus       266 GIClG~QLLa~A~GG--------------~v~k~~~gh~g~n~pv~----~~~~--g--~v~its~~H~~aV~~~~Lp~~  323 (379)
T 1a9x_B          266 GICLGHQLLALASGA--------------KTVKMKFGHHGGNHPVK----DVEK--N--VVMITAQNHGFAVDEATLPAN  323 (379)
T ss_dssp             EETHHHHHHHHHTTC--------------CEEEEEEEEEEEEEEEE----ETTT--T--EEEEEEEEEEEEECSTTCCTT
T ss_pred             EECchHHHHHHHhCc--------------EEEecccccccCceeeE----ecCC--C--cEEEEecCccceEecccCCCC
Confidence            999999999999852              34455555433222111    1110  0  111122247788875  8889


Q ss_pred             cEEEEec
Q 030035          154 VDVLADY  160 (184)
Q Consensus       154 v~vLa~~  160 (184)
                      ++++|..
T Consensus       324 ~~v~a~s  330 (379)
T 1a9x_B          324 LRVTHKS  330 (379)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999987

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.55  E-value=4.7e-16  Score=130.71  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=63.2

Q ss_pred             CEEEEE-ec---CCCHHHHHHHHHHCCC----eEEEE--cC-----------CCC-------CCCCCEEEEcCCchhHHH
Q 030035            1 MVVGVL-AL---QGSFNEHIAALKRLGV----KGVEI--RK-----------PDQ-------LQNVSSLIIPGGESTTMA   52 (184)
Q Consensus         1 m~IgVl-~~---qG~~~~~~~~L~~~G~----~v~~v--~~-----------~~~-------l~~~DglIipGG~~~~~~   52 (184)
                      |||+|+ .+   +..+.++.++|+++|+    ++.++  ..           +++       +.++|+||||||+++.  
T Consensus        26 ~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~~--  103 (289)
T 2v4u_A           26 CSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIR--  103 (289)
T ss_dssp             EEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSST--
T ss_pred             eEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCch--
Confidence            479998 44   3348899999998865    33333  21           111       5678999999997653  


Q ss_pred             HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      .+.   +..+.++++.+.++|+||||+|||+|+.+++.
T Consensus       104 ~~~---~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg  138 (289)
T 2v4u_A          104 GTL---GKLQAISWARTKKIPFLGVXLGMQLAVIEFAR  138 (289)
T ss_dssp             THH---HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHH
T ss_pred             hHH---HHHHHHHHHHHcCCcEEEECccHHHHHHHHhc
Confidence            222   36788999988999999999999999998864

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.51  E-value=4.7e-14  Score=119.82  Aligned_cols=87  Identities=24%  Similarity=0.462  Sum_probs=65.3

Q ss_pred             EEEEEecCCCH------------HHHHHHHHHCCCeEEEEcCCCC-------CCCCCEEEEcCCchh----HHHHHHhcC
Q 030035            2 VVGVLALQGSF------------NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGEST----TMARLAEYH   58 (184)
Q Consensus         2 ~IgVl~~qG~~------------~~~~~~L~~~G~~v~~v~~~~~-------l~~~DglIipGG~~~----~~~~l~~~~   58 (184)
                      +|||++.++..            .++.++|+++|+++++++...+       ++++|+||||||.++    .+..+..  
T Consensus        32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~--  109 (315)
T 1l9x_A           32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAK--  109 (315)
T ss_dssp             EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHH--
T ss_pred             EEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHH--
Confidence            59999876543            2678999999999999975432       347899999999633    2433332  


Q ss_pred             ChHHHHHHHHHcC--CcEEEEchHHHHHHHhhhc
Q 030035           59 NLFPALREFVKMG--KPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        59 ~l~~~l~~~~~~g--~PvlGIC~G~QlLa~~~~~   90 (184)
                      .+.+.++++.++|  +|+||||+|||+|+.+++.
T Consensus       110 ~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG  143 (315)
T 1l9x_A          110 IFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISG  143 (315)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCC
Confidence            3566777776654  9999999999999999864

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=2.4e-14  Score=115.03  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             EEEEEecC-C------CHHHHHHHHHHCCCeEEEEc----CC----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035            2 VVGVLALQ-G------SFNEHIAALKRLGVKGVEIR----KP----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE   66 (184)
Q Consensus         2 ~IgVl~~q-G------~~~~~~~~L~~~G~~v~~v~----~~----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~   66 (184)
                      ||+++-.. |      ++.++.++|+++|+++..++    ++    +.+.++|+|++|||....+-+..+..++.+.|++
T Consensus        29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~  108 (206)
T 3l4e_A           29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILE  108 (206)
T ss_dssp             EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHHHHTHHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHHCChHHHHHH
Confidence            67777532 2      45678899999999998884    43    3367899999999976654444444689999999


Q ss_pred             HHHcCCcEEEEchHHHHHHHhhhcc----------cCCCccccCcceeeee
Q 030035           67 FVKMGKPVWGTCAGLIFLANKAVGQ----------KLGGQELVGGLDCTVH  107 (184)
Q Consensus        67 ~~~~g~PvlGIC~G~QlLa~~~~~~----------~~~~~~~LG~ldv~v~  107 (184)
                      ++++|+|++|||+|+|+|++.+...          .....++||++|..+.
T Consensus       109 ~~~~G~p~~G~sAGa~~l~~~i~~~~~~~~~~~~~~~~~~~GLGlv~~~i~  159 (206)
T 3l4e_A          109 EIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTL  159 (206)
T ss_dssp             HHHTTCEEEEETHHHHTTSSBCGGGTTTSCGGGCSSCCCCBCCCCSSSEEE
T ss_pred             HHHcCCeEEEECHHHHHhcccceeccCCCCccccCCCCcCCcccCCCCEeE
Confidence            9999999999999999999876411          1224578999987665

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.45  E-value=2.2e-13  Score=125.59  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcCCchhHH----HHHHhcCChHHHHHHHHHcCCc
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~--~~l~~~DglIipGG~~~~~----~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      |+|.|+.+...|.. +.++|++.|+++.+++..  .++.++|+|||+||.+...    .++.   .+.+.|+++.+.++|
T Consensus       447 k~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i~---~~~~lI~~a~~~~iP  523 (645)
T 3r75_A          447 CRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA---RLYAWLRHLIDEGKP  523 (645)
T ss_dssp             CEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHHH---HHHHHHHHHHHHTCC
T ss_pred             CEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhHH---HHHHHHHHHHHCCCC
Confidence            57899988777765 668999999999888643  3356899999999864332    1222   246778888888999


Q ss_pred             EEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeE-EeeccccCCccccCCCCCcceeEeeecCceEEe
Q 030035           74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQ-SFEAELSVPALASQEGGPETFRGVFIRAPAVLD  149 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~-sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~  149 (184)
                      +||||+|||+|+.+++.              +|.+.   ..|.... .....   +-+   .+.+..+.+.+.|...+..
T Consensus       524 iLGIClG~QlLa~alGG--------------~V~~~~~~~~G~~~~i~~~~~---~l~---~~~~~~~~v~~~h~~~~~~  583 (645)
T 3r75_A          524 FMAVCLSHQILNAILGI--------------PLVRREVPNQGIQVEIDLFGQ---RER---VGFYNTYVAQTVRDEMDVD  583 (645)
T ss_dssp             EEEETHHHHHHHHHTTC--------------CEEEEEEEEEEEEEEEEETTE---EEE---EEEEEEEEEBCSCSEEEET
T ss_pred             EEEECHHHHHHHHHhCC--------------EEEcCCCcccccceEEeeecC---cce---ecCCCcEEEEEehhhcccc
Confidence            99999999999999853              12221   1121100 00000   000   0111245555556555666


Q ss_pred             cCCCcEEEEecCCC
Q 030035          150 VGPDVDVLADYPVP  163 (184)
Q Consensus       150 ~~~~v~vLa~~~~~  163 (184)
                      +|++++++|+.++-
T Consensus       584 lp~g~~v~A~s~dg  597 (645)
T 3r75_A          584 GVGTVAISRDPRTG  597 (645)
T ss_dssp             TTEEEEEEECTTTC
T ss_pred             CCCCeEEEEEcCCC
Confidence            88999999987653

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.38  E-value=3.3e-13  Score=112.46  Aligned_cols=84  Identities=11%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             EEEEE-ec----CCCHHHHHHHHHHCC----CeEEEEc--CC-----------CCCCCCCEEEEcCCchhHHHHHHhcCC
Q 030035            2 VVGVL-AL----QGSFNEHIAALKRLG----VKGVEIR--KP-----------DQLQNVSSLIIPGGESTTMARLAEYHN   59 (184)
Q Consensus         2 ~IgVl-~~----qG~~~~~~~~L~~~G----~~v~~v~--~~-----------~~l~~~DglIipGG~~~~~~~l~~~~~   59 (184)
                      ||+|+ .+    .+||.++.++|++.|    +++.+++  ..           +.++++|+||||||++..  .+.   +
T Consensus        10 ~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~--~~~---~   84 (273)
T 2w7t_A           10 RIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR--GVD---G   84 (273)
T ss_dssp             EEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT--THH---H
T ss_pred             EEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc--Cch---h
Confidence            78998 45    779999988887654    4455543  11           124589999999997553  111   2


Q ss_pred             hHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           60 LFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        60 l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      ..+.++++.+.++|+||||+|||+|+.+++.
T Consensus        85 ~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg  115 (273)
T 2w7t_A           85 KCAAAQVARMNNIPYFGVXLGMQVAVIELSR  115 (273)
T ss_dssp             HHHHHHHHHHHTCCEEEETHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCcEEEECcCHHHHHHHHhC
Confidence            5678888888899999999999999997754

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.33  E-value=3.8e-12  Score=124.63  Aligned_cols=111  Identities=23%  Similarity=0.218  Sum_probs=79.5

Q ss_pred             CEEEEEecCCCH--HHHHHHHHHCCCeEEEEc------CCCCCCCCCEEEEcCCchh--HH-------HHHHhcCChHHH
Q 030035            1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA   63 (184)
Q Consensus         1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~------~~~~l~~~DglIipGG~~~--~~-------~~l~~~~~l~~~   63 (184)
                      +||+||.++|..  .++.++|+++|++++.+.      ..++|+++|+||||||++.  .+       .....+..+.+.
T Consensus      1048 pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~ 1127 (1303)
T 3ugj_A         1048 PKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDE 1127 (1303)
T ss_dssp             CEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHH
T ss_pred             CEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHHhchhHHHH
Confidence            489999998854  578899999999988773      4567889999999998642  11       112222346677


Q ss_pred             HHHHH-HcCCcEEEEchHHHHHHHh-hhcccCCCccccCcceeeeeecccCceeEEe
Q 030035           64 LREFV-KMGKPVWGTCAGLIFLANK-AVGQKLGGQELVGGLDCTVHRNFFGSQIQSF  118 (184)
Q Consensus        64 l~~~~-~~g~PvlGIC~G~QlLa~~-~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf  118 (184)
                      +++++ +.++|+||||.|||+|++. ..-+....       ..+..||.-+|-...+
T Consensus      1128 l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~-------~p~l~~N~s~~f~~r~ 1177 (1303)
T 3ugj_A         1128 FETFFHRPQTLALGVCNGCQMMSNLRELIPGSEL-------WPRFVRNHSDRFEARF 1177 (1303)
T ss_dssp             HHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTT-------CCEEECCTTSSCEEEE
T ss_pred             HHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCC-------CCeEecCCCCCeEEeC
Confidence            88865 5799999999999999986 22110000       1358899988766665

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.20  E-value=8.6e-11  Score=99.34  Aligned_cols=143  Identities=20%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             CEEEEEecCCCHHHHHHHHHH----CC--CeEEEEcCC--C-------------------CCCCCCEEEEcCCchhH---
Q 030035            1 MVVGVLALQGSFNEHIAALKR----LG--VKGVEIRKP--D-------------------QLQNVSSLIIPGGESTT---   50 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~----~G--~~v~~v~~~--~-------------------~l~~~DglIipGG~~~~---   50 (184)
                      ||||||.+--+..+..+.|.+    ..  +++..++..  +                   +.+++||+||+||....   
T Consensus        36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~  115 (301)
T 2vdj_A           36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF  115 (301)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred             ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence            699999987766655444333    23  455545321  1                   13679999999996322   


Q ss_pred             --HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccC--CCccccCcceeeeeecccCceeEEeeccccCCc
Q 030035           51 --MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL--GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA  126 (184)
Q Consensus        51 --~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~--~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~  126 (184)
                        ...+.+   +.+.++.+.++++|+||||+|+|+++.+..+...  ...++.|+...++..             ..-|-
T Consensus       116 ed~~yw~e---l~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~-------------~~~pL  179 (301)
T 2vdj_A          116 EEVDYWEE---LKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVRE-------------QHVKL  179 (301)
T ss_dssp             GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECC-------------SSCGG
T ss_pred             ccCchHHH---HHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEEEecC-------------CCCcc
Confidence              122222   4556666667899999999999997776654111  123445544433210             01111


Q ss_pred             cccCCCCCcceeEeee-----cCceEEecCCCcEEEEecCCC
Q 030035          127 LASQEGGPETFRGVFI-----RAPAVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       127 ~~~~~~~~~~~~a~fi-----rap~i~~~~~~v~vLa~~~~~  163 (184)
                      +   .+.+..|.+.-.     |...|.++| +++|||+++.-
T Consensus       180 ~---~g~~~~f~~phsr~~~~~~~~v~~~p-ga~vLA~S~~~  217 (301)
T 2vdj_A          180 L---QGFDELFFAVHSRHTEVRESDIREVK-ELTLLANSEEA  217 (301)
T ss_dssp             G---TTCCSEEEEEEEEEEECCHHHHHTCT-TEEEEEEETTT
T ss_pred             c---cCCCCceEeeeEeccCcCHHHccCCC-CCEEEEeCCCC
Confidence            1   123345665544     445577775 99999998754

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.19  E-value=6.3e-11  Score=93.32  Aligned_cols=86  Identities=26%  Similarity=0.471  Sum_probs=67.0

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCCC----------------------CCCCCCEEEEcCCchhHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARL   54 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~~----------------------~l~~~DglIipGG~~~~~~~l   54 (184)
                      |||+||.++|    ++....+.|++.|+++.++....                      +..++|+||+|||.+.  ..+
T Consensus        24 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~--~~l  101 (193)
T 1oi4_A           24 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP--DYL  101 (193)
T ss_dssp             CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH--HHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCH--HHh
Confidence            5899999988    34556789999999998875321                      1246899999999643  344


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .....+.++|+++.++++||.|||.|.++|+++.
T Consensus       102 ~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aG  135 (193)
T 1oi4_A          102 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD  135 (193)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHT
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCC
Confidence            3333578899999999999999999999999873

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.14  E-value=4.4e-11  Score=107.44  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=64.1

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCC----Ce--EEEEcCC----------CCCCCCCEEEEcCCchhHHHHHHhcCChH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLG----VK--GVEIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLF   61 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G----~~--v~~v~~~----------~~l~~~DglIipGG~~~~~~~l~~~~~l~   61 (184)
                      +||++.    ++.+|.++.++|+.+|    .+  +.++...          ++|+++|+||+|||+++.  ..   .+..
T Consensus       295 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~--~~---~g~i  369 (535)
T 3nva_A          295 NIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR--GA---EGKI  369 (535)
T ss_dssp             EEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST--TH---HHHH
T ss_pred             EEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc--cH---HHHH
Confidence            577764    5678999999998754    34  4444321          457899999999998653  11   2467


Q ss_pred             HHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           62 PALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        62 ~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      +.|+.+.++++|+||||+|||+|+.++..
T Consensus       370 ~~ir~a~~~~~PiLGIClG~Qll~va~Gg  398 (535)
T 3nva_A          370 KAIKYAREHNIPFLGICFGFQLSIVEFAR  398 (535)
T ss_dssp             HHHHHHHHHTCCEEEETHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEECcchhHHHHHhhc
Confidence            88999988999999999999999998865

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.14  E-value=2.7e-10  Score=96.73  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=81.4

Q ss_pred             CEEEEEecCCCHHHHHH----HHHHCC--CeEEEEcCC-------------------C--CCCCCCEEEEcCCchhH---
Q 030035            1 MVVGVLALQGSFNEHIA----ALKRLG--VKGVEIRKP-------------------D--QLQNVSSLIIPGGESTT---   50 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~----~L~~~G--~~v~~v~~~-------------------~--~l~~~DglIipGG~~~~---   50 (184)
                      ||||||.+--+..+..+    .|....  +++..++..                   +  +.+++||+||+||....   
T Consensus        48 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~  127 (312)
T 2h2w_A           48 LEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPF  127 (312)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCG
T ss_pred             ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCC
Confidence            69999998766555443    333334  455555321                   1  13679999999996322   


Q ss_pred             --HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccC--CCccccCcceeeeeecccCceeEEeeccccCCc
Q 030035           51 --MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL--GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA  126 (184)
Q Consensus        51 --~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~--~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~  126 (184)
                        ...+.+   +.+.++.+.++++|+||||+|+|+++.+..+...  ...++.|+...++..              .-|-
T Consensus       128 ed~~yw~e---l~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~--------------~~pL  190 (312)
T 2h2w_A          128 EEVDYWEE---LTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAK--------------DSVL  190 (312)
T ss_dssp             GGSTTHHH---HHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESS--------------CCGG
T ss_pred             ccCchHHH---HHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcC--------------CCcc
Confidence              122222   4556666667899999999999997777654211  133455555443221              1121


Q ss_pred             cccCCCCCcceeEeeecC-----ceEEecCCCcEEEEecCCC
Q 030035          127 LASQEGGPETFRGVFIRA-----PAVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       127 ~~~~~~~~~~~~a~fira-----p~i~~~~~~v~vLa~~~~~  163 (184)
                      +   .+.+..|.+.-.|-     ..|... ++++|||+++.-
T Consensus       191 ~---~g~~~~f~vphsr~~e~~~~~v~~~-pga~vLA~S~~~  228 (312)
T 2h2w_A          191 F---RGHDDFFWAPHSRYTEVKKEDIDKV-PELEILAESDEA  228 (312)
T ss_dssp             G---TTCCSEEEEEEEEEEECCHHHHTTC-C-CEEEEEETTT
T ss_pred             c---cCCCCceEeeEEeccccCHHHccCC-CCCEEEEcCCCC
Confidence            1   13334566655432     224444 589999998754

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.13  E-value=1.9e-10  Score=88.19  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CEEEEEecCC-C---HHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG-S---FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG-~---~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      |||+||.+.| +   +....+.|++.|+++.++...                  +++  .++|.|++|||.+.  ..+..
T Consensus         3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~   80 (168)
T 3l18_A            3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP--EIVRL   80 (168)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH--HHHTT
T ss_pred             cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH--HHhcc
Confidence            7999999998 3   444678899999998877421                  222  25999999999743  23444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      +..+.++|+++.++++||.+||.|.++|+++
T Consensus        81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           81 NEKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            4457899999999999999999999999986

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=98.97  E-value=1.9e-09  Score=84.75  Aligned_cols=85  Identities=19%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC-------------------CCC---CCCCEEEEcCCchhHHHHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP-------------------DQL---QNVSSLIIPGGESTTMARLA   55 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~-------------------~~l---~~~DglIipGG~~~~~~~l~   55 (184)
                      ||+||.+.|    ++....+.|++.|+++.++...                   +++   .++|.||+|||.... ..+.
T Consensus         5 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~-~~l~   83 (197)
T 2rk3_A            5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNLS   83 (197)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHH-HHHH
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhH-HHhh
Confidence            899999998    4555678999999998877421                   123   578999999997432 2344


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ....+.++|+++.+++++|.+||.|.++|+++
T Consensus        84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           84 ESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            44457899999999999999999999999987

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=98.95  E-value=5.8e-10  Score=101.03  Aligned_cols=78  Identities=17%  Similarity=0.252  Sum_probs=56.2

Q ss_pred             cCCCHHHHHHHHHH----CCCeEEEEc--CC--------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035            8 LQGSFNEHIAALKR----LGVKGVEIR--KP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP   73 (184)
Q Consensus         8 ~qG~~~~~~~~L~~----~G~~v~~v~--~~--------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P   73 (184)
                      +..+|.++.++|++    .|+++.+++  +.        +.+.++|+||||||+++..  ..   +..+.++.+.+.++|
T Consensus       312 l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~--~~---g~i~~ir~a~e~~iP  386 (550)
T 1vco_A          312 MPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG--IE---GKVRAAQYARERKIP  386 (550)
T ss_dssp             --CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT--HH---HHHHHHHHHHHTTCC
T ss_pred             EEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc--hh---hhHHHHHHHHHCCCc
Confidence            45677777777665    456776663  21        1267899999999976541  11   246788888888999


Q ss_pred             EEEEchHHHHHHHhhhc
Q 030035           74 VWGTCAGLIFLANKAVG   90 (184)
Q Consensus        74 vlGIC~G~QlLa~~~~~   90 (184)
                      +||||+|||+|+.++..
T Consensus       387 iLGICLGmQlL~~a~Gg  403 (550)
T 1vco_A          387 YLGICLGLQIAVIEFAR  403 (550)
T ss_dssp             EEEETHHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHhCc
Confidence            99999999999998864

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=98.94  E-value=1.3e-09  Score=85.34  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=62.5

Q ss_pred             EEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CC--CCCCCEEEEcCCchhHHHHHHhcC
Q 030035            3 VGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAEYH   58 (184)
Q Consensus         3 IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~--l~~~DglIipGG~~~~~~~l~~~~   58 (184)
                      |.||..+|    ++....+.|++.|+++.++...                  ++  ..++|+|++|||.+..  .+..+.
T Consensus        11 v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~--~l~~~~   88 (177)
T 4hcj_A           11 LYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI--TLWDDW   88 (177)
T ss_dssp             EEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG--GGTTCH
T ss_pred             EEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH--HHhhCH
Confidence            56666555    3444668899999999887421                  22  2478999999997543  343334


Q ss_pred             ChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           59 NLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        59 ~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      .+.++|+++.++++||.+||.|.++|+++
T Consensus        89 ~~~~~l~~~~~~~k~iaaIC~g~~~La~a  117 (177)
T 4hcj_A           89 RTQGLAKLFLDNQKIVAGIGSGVVIMANA  117 (177)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence            57889999999999999999999999986

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.93  E-value=4.7e-09  Score=83.24  Aligned_cols=86  Identities=21%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCCC---------------------C--CCCCCEEEEcCCchhHHHH
Q 030035            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKPD---------------------Q--LQNVSSLIIPGGESTTMAR   53 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~~---------------------~--l~~~DglIipGG~~~~~~~   53 (184)
                      |||+||.+.|-    +....+.|++.|+++.++....                     +  ..++|.||+|||.... ..
T Consensus         3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~-~~   81 (205)
T 2ab0_A            3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-EC   81 (205)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HH
T ss_pred             cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccH-HH
Confidence            38999999883    4445688999999988774211                     1  2478999999996432 23


Q ss_pred             HHhcCChHHHHHHHHHcCCcEEEEchHH-HHHHHh
Q 030035           54 LAEYHNLFPALREFVKMGKPVWGTCAGL-IFLANK   87 (184)
Q Consensus        54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~-QlLa~~   87 (184)
                      +.....+.++|+++.+++++|.+||.|. ++|+++
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence            4444457899999999999999999999 999875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.92  E-value=6.7e-09  Score=81.04  Aligned_cols=84  Identities=26%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             CEEEEEecCC----CHHHHHHHHHH-CCCeEEEEcCC------------------CCCC--CCCEEEEcCCchhHHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLA   55 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~-~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~~~~~l~   55 (184)
                      |||+||.+.|    ++....+.|++ .|+++.++...                  +++.  ++|.||+|||.+..   +.
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~---~~   78 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE---KG   78 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH---HT
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc---cc
Confidence            3899999988    56667788998 89988877421                  1233  79999999997533   23


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ....+.++|+++.+++++|.+||.|.++|+++
T Consensus        79 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           79 TAADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            44568999999999999999999999999987

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.91  E-value=9.7e-09  Score=80.25  Aligned_cols=85  Identities=22%  Similarity=0.270  Sum_probs=65.4

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      ||+||...|    ++....+.|++.|+++.++...                   +++  .++|.||+|||.... ..+..
T Consensus         7 kv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~   85 (190)
T 4e08_A            7 SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGS-NAMGE   85 (190)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHH-HHHHH
T ss_pred             EEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHH-HHhhh
Confidence            799999988    3444568999999999887421                   122  368999999995322 23444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      +..+.++|+++.+++++|.+||.|.++|+++
T Consensus        86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            4457899999999999999999999999986

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.89  E-value=3.9e-09  Score=82.28  Aligned_cols=87  Identities=22%  Similarity=0.378  Sum_probs=64.7

Q ss_pred             CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC-----------------------CCC--CCCCEEEEcCCchhHH
Q 030035            1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-----------------------DQL--QNVSSLIIPGGESTTM   51 (184)
Q Consensus         1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~-----------------------~~l--~~~DglIipGG~~~~~   51 (184)
                      |||+||.+.|-    +....+.|++.|+++.++...                       +++  .++|.||+|||.... 
T Consensus        10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~-   88 (190)
T 2vrn_A           10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP-   88 (190)
T ss_dssp             CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH-
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH-
Confidence            58999999883    444668899999888766321                       122  368999999996322 


Q ss_pred             HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..+.....+.++|+++.++++||.+||.|.++|+++.
T Consensus        89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aG  125 (190)
T 2vrn_A           89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETG  125 (190)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTT
T ss_pred             HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCc
Confidence            2333333578899999999999999999999999873

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=98.86  E-value=1.8e-09  Score=97.77  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             cCCCHHHHHHHHHHCCC----eEEEEc--C------C-CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            8 LQGSFNEHIAALKRLGV----KGVEIR--K------P-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         8 ~qG~~~~~~~~L~~~G~----~v~~v~--~------~-~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      +..+|.++.++|+++|+    ++.+.+  .      . +.+.++|+||||||+++..  ..   +..+.++++.+.++|+
T Consensus       301 l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~--~~---g~~~~i~~a~~~~~Pi  375 (545)
T 1s1m_A          301 LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG--VE---GMITTARFARENNIPY  375 (545)
T ss_dssp             SGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT--HH---HHHHHHHHHHHTTCCE
T ss_pred             EEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc--ch---hhHHHHHHHHHCCCcE
Confidence            34578888899988875    334332  1      1 2367899999999976542  11   3567888888889999


Q ss_pred             EEEchHHHHHHHhhhc
Q 030035           75 WGTCAGLIFLANKAVG   90 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~   90 (184)
                      ||||+|||+|+.++..
T Consensus       376 LGIClG~Qll~va~Gg  391 (545)
T 1s1m_A          376 LGICLGMQVALIDYAR  391 (545)
T ss_dssp             EEETHHHHHHHHHHHH
T ss_pred             EEECChHHHHHHHhCC
Confidence            9999999999988754

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.83  E-value=5.5e-09  Score=83.33  Aligned_cols=87  Identities=18%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCC-------CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMA   52 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G-------~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~   52 (184)
                      ||+||.++|    ++....+.|+.++       +++.++...                  ++++++|.||+|||......
T Consensus        10 ~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~   89 (209)
T 3er6_A           10 RVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLES   89 (209)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHH
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCCchhh
Confidence            799999998    3444567776653       666665311                  23467999999999643322


Q ss_pred             HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+.....+.++|+++.+++++|.+||.|..+|+++.
T Consensus        90 ~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aG  125 (209)
T 3er6_A           90 LDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAG  125 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHT
T ss_pred             hccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcC
Confidence            222233478899999999999999999999999873

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.78  E-value=1.4e-08  Score=82.21  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             CEEEEEecCC----CHHHHHHHHHH-CCCeEEEEcC------------------CCCCCCCCEEEEcCCchhHHHHHHhc
Q 030035            1 MVVGVLALQG----SFNEHIAALKR-LGVKGVEIRK------------------PDQLQNVSSLIIPGGESTTMARLAEY   57 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~-~G~~v~~v~~------------------~~~l~~~DglIipGG~~~~~~~l~~~   57 (184)
                      |||+||.+.|    ++....+.|++ .++++.++..                  .++++++|.|++|||.+..  .+..+
T Consensus         6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~~--~~~~~   83 (231)
T 3noq_A            6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVG--ALMED   83 (231)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTHH--HHTTC
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCChh--hhccC
Confidence            3799999998    34446688888 6777776631                  1345679999999996542  34333


Q ss_pred             CChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           58 HNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..+.++|+++.+++++|.+||.|..+|+++.
T Consensus        84 ~~l~~~lr~~~~~g~~v~aiC~G~~~La~aG  114 (231)
T 3noq_A           84 PQALAFIRQQAARARYVTSVSTGSLVLGAAG  114 (231)
T ss_dssp             HHHHHHHHHHHTTCSEEEEETTHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCEEEEECHHHHHHHHcC
Confidence            4578999999999999999999999999873

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=98.77  E-value=1.1e-08  Score=81.84  Aligned_cols=86  Identities=19%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHC--CCeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRL--GVKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~--G~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~l~~   56 (184)
                      |||+||.+.|    ++....+.|++.  ++++.++...                  ++.+.+|.||+|||.+..  .+..
T Consensus         5 ~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~~~--~~~~   82 (211)
T 3mgk_A            5 YRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTR--EKVN   82 (211)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTHHH--HHTT
T ss_pred             eEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcchh--hhcC
Confidence            4899999998    344466788877  4677666311                  233458999999997432  3433


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +..+.++|+++.+++++|.+||.|..+|+++.
T Consensus        83 ~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aG  114 (211)
T 3mgk_A           83 DDNFINFIGNMVKESKYIISVCTGSALLSKAG  114 (211)
T ss_dssp             CHHHHHHHHHHHHHCSEEEECTTHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEchHHHHHHhcC
Confidence            33578999999999999999999999999863

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.72  E-value=2.9e-08  Score=78.93  Aligned_cols=85  Identities=21%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      ||+||.+.|    ++....+.|++.|+++.++...                   +++  .++|.||+|||.... ..+..
T Consensus        11 ~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~l~~   89 (208)
T 3ot1_A           11 RILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGA-QAFAD   89 (208)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHH-HHHHT
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHH-HHHhh
Confidence            899999998    3444668899999988877421                   122  368999999997422 23444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHH-HHHHHh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGL-IFLANK   87 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~-QlLa~~   87 (184)
                      +..+.++|+++.+++++|.+||.|. .+|+++
T Consensus        90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           90 STALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            4457899999999999999999999 899875

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.71  E-value=4.6e-08  Score=78.03  Aligned_cols=84  Identities=20%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             EEEEEecCC----CHHHHHHHHH--------HCCCeEEEEcCC------------------CCCC--CCCEEEEcCCchh
Q 030035            2 VVGVLALQG----SFNEHIAALK--------RLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGEST   49 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~--------~~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~   49 (184)
                      ||+||.+.|    ++....+.|+        +.++++.++...                  ++++  ++|.||+|||...
T Consensus         7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~   86 (212)
T 3efe_A            7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW   86 (212)
T ss_dssp             CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred             EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence            699999988    5666778888        667888776421                  2333  7999999999643


Q ss_pred             HHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           50 TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        50 ~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..   ..+..+.++|+++.+++++|.+||.|..+|+++.
T Consensus        87 ~~---~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aG  122 (212)
T 3efe_A           87 SE---EIHQPILERIGQALKIGTIVAAICGATDALANMG  122 (212)
T ss_dssp             TS---GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTT
T ss_pred             cc---ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcC
Confidence            21   2223478899999999999999999999999863

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.70  E-value=4.2e-08  Score=84.88  Aligned_cols=86  Identities=26%  Similarity=0.402  Sum_probs=67.0

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCCC----------------------------------C--CCCCCE
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKPD----------------------------------Q--LQNVSS   40 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~~----------------------------------~--l~~~Dg   40 (184)
                      +||+||...|    ++....+.|++.|+++.++....                                  +  ..++|.
T Consensus        13 ~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   92 (396)
T 3uk7_A           13 RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDG   92 (396)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred             CeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCE
Confidence            3799999988    34446788999999998874211                                  1  146899


Q ss_pred             EEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        41 lIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      |++|||.+..  .+..+..+.++|+++.+++++|.+||.|.++|+++.
T Consensus        93 livpGG~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aG  138 (396)
T 3uk7_A           93 LVIPGGRAPE--YLALTASVVELVKEFSRSGKPIASICHGQLILAAAD  138 (396)
T ss_dssp             EEECCBSHHH--HHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTT
T ss_pred             EEECCCcchh--hcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhcc
Confidence            9999997532  344444578899999999999999999999999874

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=98.70  E-value=3.8e-08  Score=77.57  Aligned_cols=87  Identities=21%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEc---CC------------------CCC-------CCCCEEEEcCCch
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIR---KP------------------DQL-------QNVSSLIIPGGES   48 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~---~~------------------~~l-------~~~DglIipGG~~   48 (184)
                      |||+||.+.|    ++....+.|++.|+++..+.   ..                  +++       ++||.||||||..
T Consensus         5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~   84 (194)
T 4gdh_A            5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL   84 (194)
T ss_dssp             CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred             CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence            5899999998    34556788999998876552   10                  111       2479999999964


Q ss_pred             hHHHHHHhcCChHHHHHHHHHc-CCcEEEEchHHHHHHHhh
Q 030035           49 TTMARLAEYHNLFPALREFVKM-GKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        49 ~~~~~l~~~~~l~~~l~~~~~~-g~PvlGIC~G~QlLa~~~   88 (184)
                      .. ..+..+..+.++|+++.++ ++++..||.|..++...+
T Consensus        85 ~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~~agl  124 (194)
T 4gdh_A           85 GA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKTSG  124 (194)
T ss_dssp             HH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHHHHTT
T ss_pred             hH-hHhhhCHHHHHHHHHhhhcCCceEEeecccccchhhce
Confidence            32 3455545578899998764 799999999996655443

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.67  E-value=3e-08  Score=76.27  Aligned_cols=87  Identities=22%  Similarity=0.323  Sum_probs=60.5

Q ss_pred             CEEEEEecC---C-CHHHHHHHHHHCCCeEEEEcCC-------------------CCC----CCCCEEEEcCC--c-hhH
Q 030035            1 MVVGVLALQ---G-SFNEHIAALKRLGVKGVEIRKP-------------------DQL----QNVSSLIIPGG--E-STT   50 (184)
Q Consensus         1 m~IgVl~~q---G-~~~~~~~~L~~~G~~v~~v~~~-------------------~~l----~~~DglIipGG--~-~~~   50 (184)
                      |||+||.+.   | .+.+..+.+.+.|+++.++...                   +++    .++|.||+|||  . +..
T Consensus         3 ~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~   82 (175)
T 3cne_A            3 KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQ   82 (175)
T ss_dssp             CEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGG
T ss_pred             cEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHH
Confidence            489999988   5 1123334444788888877421                   223    56899999999  5 332


Q ss_pred             -HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           51 -MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        51 -~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                       +.....+..+.++|+++.+++++|.+||.|.++|+++
T Consensus        83 ~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           83 QYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence             1100022247889999999999999999999999986

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.66  E-value=3.8e-08  Score=79.45  Aligned_cols=88  Identities=24%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             CEEEEEec-----CCC----HHHHHHHHHHCCCeEEEEcCC------------------------------------CCC
Q 030035            1 MVVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP------------------------------------DQL   35 (184)
Q Consensus         1 m~IgVl~~-----qG~----~~~~~~~L~~~G~~v~~v~~~------------------------------------~~l   35 (184)
                      +||+||..     .|-    +....+.|++.|+++.++...                                    +++
T Consensus         7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~   86 (232)
T 1vhq_A            7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   86 (232)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence            37999988     772    344568899999998877421                                    111


Q ss_pred             --CCCCEEEEcCCchhH--HHHHH-------hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 --QNVSSLIIPGGESTT--MARLA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 --~~~DglIipGG~~~~--~~~l~-------~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                        +++|+||+|||.+..  +..+.       .+..+.++|+++.++|++|.+||.|.++|++++
T Consensus        87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL  150 (232)
T 1vhq_A           87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF  150 (232)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred             CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence              368999999997542  11111       123478899999999999999999999999984

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.66  E-value=6.3e-08  Score=83.76  Aligned_cols=86  Identities=24%  Similarity=0.359  Sum_probs=66.6

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC----------------------------------CC--CCCCCE
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP----------------------------------DQ--LQNVSS   40 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~----------------------------------~~--l~~~Dg   40 (184)
                      +||+||...|    ++....+.|++.|+++.++...                                  ++  ..++|.
T Consensus       206 ~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~  285 (396)
T 3uk7_A          206 KRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDA  285 (396)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred             ceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCE
Confidence            4799999988    3445678899999998877421                                  11  236899


Q ss_pred             EEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        41 lIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ||+|||.+..  .+.....+.++|+++.+++++|.+||.|.++|+++.
T Consensus       286 livpGg~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aG  331 (396)
T 3uk7_A          286 LVIPGGRAPE--YLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAG  331 (396)
T ss_dssp             EEECCBSHHH--HHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTT
T ss_pred             EEECCCcchh--hhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcC
Confidence            9999997532  344444578899999999999999999999999873

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.65  E-value=6.2e-08  Score=77.24  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             EEEEEecCC----CHHHHHHHHHHC-CCeEEEEcCC-----------------CCCC-CCCEEEEcCCchhHHHHHHhcC
Q 030035            2 VVGVLALQG----SFNEHIAALKRL-GVKGVEIRKP-----------------DQLQ-NVSSLIIPGGESTTMARLAEYH   58 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~-G~~v~~v~~~-----------------~~l~-~~DglIipGG~~~~~~~l~~~~   58 (184)
                      ||+||.+.|    ++....+.|++. ++++.++...                 +++. ++|.||+|||.+...    ...
T Consensus         5 kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~----~~~   80 (206)
T 3f5d_A            5 KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN----DNK   80 (206)
T ss_dssp             EEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC----CCH
T ss_pred             EEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh----cCH
Confidence            699999988    455677889887 8887766421                 2333 799999999864322    223


Q ss_pred             ChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           59 NLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        59 ~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+.++|+++.+++++|.+||.|.++|+++.
T Consensus        81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~aG  110 (206)
T 3f5d_A           81 KLLHFVKTAFQKNIPIAAICGAVDFLAKNG  110 (206)
T ss_dssp             HHHHHHHHHHHTTCCEEEETHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCEEEEECHHHHHHHHcC
Confidence            478899999999999999999999999873

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.63  E-value=8.1e-08  Score=78.58  Aligned_cols=86  Identities=21%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             EEEEEec-----CC----CHHHHHHHHHHCCCeEEEEcCC------------------------------------CCC-
Q 030035            2 VVGVLAL-----QG----SFNEHIAALKRLGVKGVEIRKP------------------------------------DQL-   35 (184)
Q Consensus         2 ~IgVl~~-----qG----~~~~~~~~L~~~G~~v~~v~~~------------------------------------~~l-   35 (184)
                      ||+||..     .|    ++....+.|++.|+++.++...                                    +++ 
T Consensus        25 kV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~  104 (242)
T 3l3b_A           25 NSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIR  104 (242)
T ss_dssp             EEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCC
T ss_pred             EEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCC
Confidence            7999886     66    2334568899999998876421                                    112 


Q ss_pred             -CCCCEEEEcCCchhHHHHH-----------HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 -QNVSSLIIPGGESTTMARL-----------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 -~~~DglIipGG~~~~~~~l-----------~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                       +++|+||||||.+.. ..|           ..+..+.++|+++.++++||.+||.|.++|+++.
T Consensus       105 ~~~~D~livPGG~~~~-~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          105 VEEFDMLVIPGGYGVA-KNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             GGGCSEEEECCCHHHH-HHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             cccCCEEEEcCCcchh-hhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence             368999999997542 112           1123478899999999999999999999999875

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=98.61  E-value=1.1e-07  Score=78.20  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             CEEEEEecCC----CHHHHHHHH-HHCCCeEEEEcCC------------------CCC-CCCCEEEEcCCc-hhHHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAAL-KRLGVKGVEIRKP------------------DQL-QNVSSLIIPGGE-STTMARLA   55 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L-~~~G~~v~~v~~~------------------~~l-~~~DglIipGG~-~~~~~~l~   55 (184)
                      +||+||.+.|    ++....+.| +..|+++.++...                  +++ ..+|.||||||. +..  .+.
T Consensus        24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~~--~l~  101 (253)
T 3ewn_A           24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGTL--AAA  101 (253)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHHH--HHT
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccchh--hhc
Confidence            4899999998    344466788 4568888777411                  122 246999999997 432  343


Q ss_pred             hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+..+.++|+++.+++++|.+||.|..+|+++.
T Consensus       102 ~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AG  134 (253)
T 3ewn_A          102 SDAETLAFMADRGARAKYITSVCSGSLILGAAG  134 (253)
T ss_dssp             TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcC
Confidence            434578999999999999999999999999873

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.61  E-value=5.3e-08  Score=89.93  Aligned_cols=89  Identities=20%  Similarity=0.191  Sum_probs=67.9

Q ss_pred             CEEEEEecCCCH-----HHHHHHHHHCCCeEEEEcCC---------CC--CCCCCEEEEcCCchhH------HHHHHhcC
Q 030035            1 MVVGVLALQGSF-----NEHIAALKRLGVKGVEIRKP---------DQ--LQNVSSLIIPGGESTT------MARLAEYH   58 (184)
Q Consensus         1 m~IgVl~~qG~~-----~~~~~~L~~~G~~v~~v~~~---------~~--l~~~DglIipGG~~~~------~~~l~~~~   58 (184)
                      +||+||+-.|++     ..+.++|++.|+++.++...         ++  ..++|+||||||....      .+.|....
T Consensus       538 rKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~  617 (688)
T 3ej6_A          538 LRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAG  617 (688)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTT
T ss_pred             CEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCH
Confidence            489999988844     44678999999999998531         11  1369999999996421      12344444


Q ss_pred             ChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           59 NLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        59 ~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      ...++++++.+.+|||.+||.|.++|..+-.
T Consensus       618 ~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI  648 (688)
T 3ej6_A          618 RPSQILTDGYRWGKPVAAVGSAKKALQSIGV  648 (688)
T ss_dssp             HHHHHHHHHHHTTCCEEEEGGGHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCEEEEeCccHHHHHHcCC
Confidence            5788999999999999999999999998753

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.58  E-value=7.2e-08  Score=76.38  Aligned_cols=84  Identities=20%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCC------CeEEEEcCC-----------------CC--CCCCCEEEEcCCchhHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLG------VKGVEIRKP-----------------DQ--LQNVSSLIIPGGESTTM   51 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G------~~v~~v~~~-----------------~~--l~~~DglIipGG~~~~~   51 (184)
                      +||+||.+.|    ++....+.|+..+      +++.++...                 ++  ..++|.||+|||.....
T Consensus         6 ~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~~   85 (202)
T 3gra_A            6 YRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTPL   85 (202)
T ss_dssp             EEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCCS
T ss_pred             EEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchhh
Confidence            3799999998    3344567777654      666665311                 22  35799999999964331


Q ss_pred             HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..    ..+.++|+++.+++++|.+||.|..+|+++.
T Consensus        86 ~~----~~l~~~l~~~~~~g~~iaaIC~G~~~La~aG  118 (202)
T 3gra_A           86 KY----PELDRLLNDCAAHGMALGGLWNGAWFLGRAG  118 (202)
T ss_dssp             CC----TTHHHHHHHHHHHTCEEEEETTHHHHHHHHT
T ss_pred             cc----HHHHHHHHHHHhhCCEEEEECHHHHHHHHcC
Confidence            11    3588999999999999999999999999873

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.58  E-value=3.5e-08  Score=91.80  Aligned_cols=86  Identities=23%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      +||+||...|    .+....++|++.|+++.++...                  ++.  .++|+|||||| +..  .|..
T Consensus       601 rKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~--~Lr~  677 (753)
T 3ttv_A          601 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIA--DIAD  677 (753)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGG--GTTT
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChH--Hhhh
Confidence            4899999888    4566789999999999887421                  122  24899999999 433  3444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      ...+.++|+++.+++|||.+||.|.++|+++..
T Consensus       678 d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL  710 (753)
T 3ttv_A          678 NGDANYYLMEAYKHLKPIALAGDARKFKATIKI  710 (753)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTC
T ss_pred             CHHHHHHHHHHHhcCCeEEEECchHHHHHHcCC
Confidence            345789999999999999999999999998854

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.55  E-value=1.1e-07  Score=75.96  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=64.7

Q ss_pred             EEEEEec----------CC----CHHHHHHHHHHCCCeEEEEcCC-------------------------------CCC-
Q 030035            2 VVGVLAL----------QG----SFNEHIAALKRLGVKGVEIRKP-------------------------------DQL-   35 (184)
Q Consensus         2 ~IgVl~~----------qG----~~~~~~~~L~~~G~~v~~v~~~-------------------------------~~l-   35 (184)
                      ||+||..          .|    ++....+.|++.|+++.++...                               +++ 
T Consensus         7 kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~   86 (224)
T 1u9c_A            7 RVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDD   86 (224)
T ss_dssp             EEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGG
T ss_pred             eEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcC
Confidence            7999988          66    3444668899999998877411                               111 


Q ss_pred             -CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 -QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 -~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                       .++|+||+|||.... ..+.....+.++|+++.+++++|.+||.|.++|+++.
T Consensus        87 ~~~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag  139 (224)
T 1u9c_A           87 AHGFDAIFLPGGHGTM-FDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNAT  139 (224)
T ss_dssp             GSSCSEEEECCCTTHH-HHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             hhhCCEEEECCCcchH-HHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHcc
Confidence             368999999997543 1233333578899999999999999999999999874

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.52  E-value=2.7e-07  Score=79.74  Aligned_cols=86  Identities=23%  Similarity=0.328  Sum_probs=65.9

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC--------------------CCCC--CCCEEEEcCCchhHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP--------------------DQLQ--NVSSLIIPGGESTTMARL   54 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~--------------------~~l~--~~DglIipGG~~~~~~~l   54 (184)
                      +||+||.+.|    ++....+.|++.|+++.++...                    ++++  ++|.||+|||.+..  .+
T Consensus        11 kkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~--~l   88 (365)
T 3fse_A           11 KKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPD--KM   88 (365)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHH--HH
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchh--hc
Confidence            3799999998    3445678899999988776311                    1222  58999999997432  34


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .....+.++|+++.+++++|.+||.|..+|+++.
T Consensus        89 ~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AG  122 (365)
T 3fse_A           89 RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGD  122 (365)
T ss_dssp             TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcC
Confidence            4444578999999999999999999999999863

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=98.44  E-value=6.2e-07  Score=83.45  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      |||+||...|    ++....+.|++.|+++.++...                  +++  .++|+||||||... ...+..
T Consensus       535 rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~-~~~l~~  613 (715)
T 1sy7_A          535 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA-AETLSK  613 (715)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHH-HHHHHT
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCccc-Hhhhcc
Confidence            5899999988    3444668899999999887421                  122  35899999999532 223444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ...+.++|+++.+++++|.+||.|..+|+++
T Consensus       614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~A  644 (715)
T 1sy7_A          614 NGRALHWIREAFGHLKAIGATGEAVDLVAKA  644 (715)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCEEEEECHHHHHHHHc
Confidence            4457889999999999999999999999998

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.34  E-value=7.9e-07  Score=72.87  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=41.2

Q ss_pred             CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        37 ~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ++|+|+||||.+. +..+..+..+.++|+++.++++||.+||.|.++|+++
T Consensus       105 ~yD~l~ipGG~g~-~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          105 DYGLMFVCGGHGA-LYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hCCEEEEeCCCch-hhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence            5899999999754 2234444457889999999999999999999999886

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.32  E-value=4.3e-07  Score=84.00  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             CEEEEEec--CC----CHHHHHHHHHHCCCeEEEEcCC---------CC--CCCCCEEEEcCCchh--------------
Q 030035            1 MVVGVLAL--QG----SFNEHIAALKRLGVKGVEIRKP---------DQ--LQNVSSLIIPGGEST--------------   49 (184)
Q Consensus         1 m~IgVl~~--qG----~~~~~~~~L~~~G~~v~~v~~~---------~~--l~~~DglIipGG~~~--------------   49 (184)
                      +||+||+-  .|    .+..+.++|++.|++++++...         ++  -.++|+||||||...              
T Consensus       530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~  609 (688)
T 2iuf_A          530 LKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAG  609 (688)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTT
T ss_pred             CEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccc
Confidence            48999987  55    3455778999999999998531         11  236999999999432              


Q ss_pred             -HHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        50 -~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                       ..+.|.......++|+++.+.||||.+||.|.++|.++-
T Consensus       610 ~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aG  649 (688)
T 2iuf_A          610 SGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQ  649 (688)
T ss_dssp             SCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTT
T ss_pred             cchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcC
Confidence             012344444578899999999999999999999998874

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.31  E-value=6.7e-07  Score=72.61  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        37 ~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++|+||+|||.... ..+..+..+.++|+++.++|++|.+||.|..+|+++.
T Consensus        98 ~~D~livpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag  148 (243)
T 1rw7_A           98 DYQIFFASAGHGTL-FDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLT  148 (243)
T ss_dssp             GEEEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             hCcEEEECCCCCch-hhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcC
Confidence            68999999997542 2233334578899999999999999999999999874

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=98.20  E-value=8e-07  Score=72.32  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCC--CeEEEEcCC-----------------CCCCCCCEEEEcCC-chhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLIIPGG-ESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G--~~v~~v~~~-----------------~~l~~~DglIipGG-~~~~~~~l~~   56 (184)
                      +||+||.+.|    ++....+.|++.+  +++.++.+.                 ++..++|.||+||| .+..  .+..
T Consensus        21 ~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~~--~l~~   98 (236)
T 3bhn_A           21 YKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGIP--AALQ   98 (236)
T ss_dssp             EEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEESSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHHH--HHHT
T ss_pred             CEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEECCCcEEecCCcEEecCcccccccCCCEEEEcCCccCHh--hhcc
Confidence            3799999998    3444567787755  566655310                 12357899999999 4432  2333


Q ss_pred             cCChHHHHHHHHHcCC-cEEEEchHHHHHHHh
Q 030035           57 YHNLFPALREFVKMGK-PVWGTCAGLIFLANK   87 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~-PvlGIC~G~QlLa~~   87 (184)
                      +..+.++|  +.++++ +|.+||.|..+|+++
T Consensus        99 ~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           99 DENFMSAL--KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             CHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred             CHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence            33466777  345566 999999999999987

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=98.16  E-value=1.2e-06  Score=73.45  Aligned_cols=104  Identities=14%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             EEEEEecCC-C----HHHHHHHHHHCCC-eEEEEcC--C---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLALQG-S----FNEHIAALKRLGV-KGVEIRK--P---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG-~----~~~~~~~L~~~G~-~v~~v~~--~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      ||.++-... +    ...+.++++++|+ ++..+..  .         +.|.++|+|+++||....+.++....++.+.|
T Consensus        58 ~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L  137 (291)
T 3en0_A           58 IIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRI  137 (291)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHH
T ss_pred             eEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHH
Confidence            677774432 3    2335678888999 5665532  1         12568999999999877766666667899999


Q ss_pred             HHHHHcC-CcEEEEchHHHHHHHhhhccc----CC------CccccCcceee
Q 030035           65 REFVKMG-KPVWGTCAGLIFLANKAVGQK----LG------GQELVGGLDCT  105 (184)
Q Consensus        65 ~~~~~~g-~PvlGIC~G~QlLa~~~~~~~----~~------~~~~LG~ldv~  105 (184)
                      ++++++| .|+.|+|+|+.++++.+....    ..      ..++||+++..
T Consensus       138 ~~~~~~G~~~~~GtSAGA~i~~~~m~~~g~s~~~p~~~~v~~~~GLGll~~~  189 (291)
T 3en0_A          138 RQRVHNGEISLAGTSAGAAVMGHHMIAGGSSGEWPNRALVDMAVGLGIVPEI  189 (291)
T ss_dssp             HHHHHTTSSEEEEETHHHHTTSSEEEEEECCSSCCCGGGEEEEECCCSSTTE
T ss_pred             HHHHHCCCeEEEEeCHHHHhhhHheEcCCCCccCcccCceeecCcccccCCC
Confidence            9999999 999999999999998653210    01      23578988865

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=98.14  E-value=2.1e-06  Score=71.80  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=41.1

Q ss_pred             CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+++|+||||||.+... .+..+..+.++|+++.+++++|.+||.|..+|+.+.
T Consensus       143 ~~~yD~livPGG~g~~~-~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          143 DSEYAAIFVPGGHGALI-GLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             TCSEEEEEECCSGGGGS-SGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             cccCCEEEecCCcchhh-hhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence            35789999999965321 233333478899999999999999999999888764

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.14  E-value=2.2e-06  Score=70.08  Aligned_cols=50  Identities=12%  Similarity=0.209  Sum_probs=41.2

Q ss_pred             CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        37 ~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      ++|+|++|||.+.. ..+..+..+.++|+++.++++||.+||.|..+|+++
T Consensus        98 ~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           98 DYKVFFASAGHGAL-FDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence            58999999997542 234444457889999999999999999999999876

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=95.47  E-value=0.052  Score=44.01  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             ecCCCHHHHHHHHHHCCCeEEEE-------cCC---CCCCCCCEEEEcCCchhHHH----HHHh---cCChHHHHHHHHH
Q 030035            7 ALQGSFNEHIAALKRLGVKGVEI-------RKP---DQLQNVSSLIIPGGESTTMA----RLAE---YHNLFPALREFVK   69 (184)
Q Consensus         7 ~~qG~~~~~~~~L~~~G~~v~~v-------~~~---~~l~~~DglIipGG~~~~~~----~l~~---~~~l~~~l~~~~~   69 (184)
                      .+.+....+.++|+..+++++.+       ..+   ++|+++|.||+.+-..+...    ...+   .....+.|+++++
T Consensus        37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~  116 (256)
T 2gk3_A           37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK  116 (256)
T ss_dssp             EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH
Confidence            35566677889999999999988       223   34678999999984333211    1110   0246789999999


Q ss_pred             cCCcEEEEchH
Q 030035           70 MGKPVWGTCAG   80 (184)
Q Consensus        70 ~g~PvlGIC~G   80 (184)
                      +|..+++| .|
T Consensus       117 ~GGgll~i-gG  126 (256)
T 2gk3_A          117 NGGGLLMI-GG  126 (256)
T ss_dssp             TTCEEEEE-CS
T ss_pred             hCCEEEEE-CC
Confidence            99999999 44

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=95.25  E-value=0.023  Score=47.06  Aligned_cols=70  Identities=24%  Similarity=0.398  Sum_probs=50.5

Q ss_pred             CEEEEEecCCC-HHHHHHHHHHCCCeEEEEcC-CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRK-PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         1 m~IgVl~~qG~-~~~~~~~L~~~G~~v~~v~~-~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      |||+|+.-... ..++.+.|++.|+++..... .+.+.++|.+|.-||-++...          ..+.+... +|++||=
T Consensus        30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~----------aa~~~~~~-~PilGIN   98 (278)
T 1z0s_A           30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILR----------ILQKLKRC-PPIFGIN   98 (278)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHH----------HHTTCSSC-CCEEEEE
T ss_pred             eEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHH----------HHHHhCCC-CcEEEEC
Confidence            89999877554 56678889999999887653 233568999999999877532          22333234 8999997


Q ss_pred             hHH
Q 030035           79 AGL   81 (184)
Q Consensus        79 ~G~   81 (184)
                      .|.
T Consensus        99 ~G~  101 (278)
T 1z0s_A           99 TGR  101 (278)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            763

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=91.64  E-value=0.29  Score=39.82  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=41.7

Q ss_pred             CEEEEEecCCC-----HHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc--CCc
Q 030035            1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM--GKP   73 (184)
Q Consensus         1 m~IgVl~~qG~-----~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~--g~P   73 (184)
                      |||+++.-...     ..++.+.|++.|+++       +.+++|.+|.-||-+|..          ...+.+...  ++|
T Consensus         1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v-------~~~~~D~vv~lGGDGT~l----------~aa~~~~~~~~~~P   63 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEY-------DDVEPEIVISIGGDGTFL----------SAFHQYEERLDEIA   63 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEE-------CSSSCSEEEEEESHHHHH----------HHHHHTGGGTTTCE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEe-------CCCCCCEEEEEcCcHHHH----------HHHHHHhhcCCCCC
Confidence            89999876321     122445577788877       235789999999988753          223333333  799


Q ss_pred             EEEEchH
Q 030035           74 VWGTCAG   80 (184)
Q Consensus        74 vlGIC~G   80 (184)
                      ++||=.|
T Consensus        64 ilGIn~G   70 (272)
T 2i2c_A           64 FIGIHTG   70 (272)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9999665

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=91.09  E-value=1.2  Score=36.54  Aligned_cols=61  Identities=15%  Similarity=0.052  Sum_probs=42.1

Q ss_pred             HHHHHHHCC-CeEEEEcCC----------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           15 HIAALKRLG-VKGVEIRKP----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        15 ~~~~L~~~G-~~v~~v~~~----------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                      +.+.|++.| +++.+..++          ++|+++|.||+--... .   +..  ...+.|++++++|.+++|+..+.
T Consensus        25 l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~-~---l~~--~~~~~l~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           25 LKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGD-S---WPE--ETNRRFLEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             HHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSS-C---CCH--HHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             HHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCC-c---CCH--HHHHHHHHHHHcCCCEEEEeccc
Confidence            345677778 888888653          3588999999743211 1   111  14567889999999999999764

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=89.15  E-value=1.2  Score=36.71  Aligned_cols=69  Identities=16%  Similarity=0.131  Sum_probs=43.3

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC-C---------------------------CCCCCCEEEEcCCc
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-D---------------------------QLQNVSSLIIPGGE   47 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~-~---------------------------~l~~~DglIipGG~   47 (184)
                      ||+|+.-.+.      ..++.+.|++.|+++.+.... +                           ..+++|.+|.-||-
T Consensus         6 ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGD   85 (307)
T 1u0t_A            6 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGD   85 (307)
T ss_dssp             EEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCC
Confidence            7998876543      345667788899987654211 0                           12357999999998


Q ss_pred             hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035           48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus        48 ~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      +|..          ...+.+...++|++||=.|
T Consensus        86 GT~l----------~a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           86 GTFL----------RAAELARNASIPVLGVNLG  108 (307)
T ss_dssp             HHHH----------HHHHHHHHHTCCEEEEECS
T ss_pred             HHHH----------HHHHHhccCCCCEEEEeCC
Confidence            7753          2233333457899999655

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=88.45  E-value=1.3  Score=40.61  Aligned_cols=59  Identities=17%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ..+.++|.+.|+.+.++...++|.+++.||+|.-....       ..+.+.|++++++|.-++..+
T Consensus       428 ~~~y~aL~~~gi~vD~v~~~~dL~~Yklvv~P~~~~~~-------~~~~~~L~~yV~~GG~lv~t~  486 (675)
T 3tty_A          428 HKYYDALYKQNIQTDMISVEEDLSKYKVVIAPVMYMVK-------PGFAERVERFVAQGGTFVTTF  486 (675)
T ss_dssp             HHHHHHHHTTTCCEEEECTTSCCTTCSEEEETTCCBCC-------TTHHHHHHHHHHTTCEEEEET
T ss_pred             HHHHHHHHHcCceEEEecCcCCcccCCEEEEeccEecC-------HHHHHHHHHHHhcCCEEEEEc
Confidence            44678899999999999988899999999999864322       246778999999887666665

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=88.40  E-value=0.34  Score=39.48  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=44.1

Q ss_pred             EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC----C----------CC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035            2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP----D----------QL-QNVSSLIIPGGESTTMARLAEYHNL   60 (184)
Q Consensus         2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~----~----------~l-~~~DglIipGG~~~~~~~l~~~~~l   60 (184)
                      ||+++.-.++      ..++.+.|++.|+++.+..+.    .          .+ .++|.+|.-||-+|..         
T Consensus         7 ki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l---------   77 (292)
T 2an1_A            7 CIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNML---------   77 (292)
T ss_dssp             EEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHH---------
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHH---------
Confidence            6888876432      344667888999998765311    0          01 2579999999988752         


Q ss_pred             HHHHHHHHHcCCcEEEEchH
Q 030035           61 FPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus        61 ~~~l~~~~~~g~PvlGIC~G   80 (184)
                       +.++.+...+.|++||=.|
T Consensus        78 -~a~~~~~~~~~P~lGI~~G   96 (292)
T 2an1_A           78 -GAARTLARYDINVIGINRG   96 (292)
T ss_dssp             -HHHHHHTTSSCEEEEBCSS
T ss_pred             -HHHHHhhcCCCCEEEEECC
Confidence             3344444457899999655

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=88.11  E-value=1.3  Score=31.53  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=38.4

Q ss_pred             HHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035           14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus        14 ~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      .+.+.|.+.|++..-    +.++.+|.+|+.-|..+.....     ....|+.+.+.|+|++||=
T Consensus        19 ~L~~~l~~~~f~~~~----~~I~~~~~vIvL~G~~t~~s~w-----v~~EI~~A~~~gkpIigV~   74 (111)
T 1eiw_A           19 VFLERLEQSGLEWRP----ATPEDADAVIVLAGLWGTRRDE-----ILGAVDLARKSSKPIITVR   74 (111)
T ss_dssp             HHHHHHHHHCSCEEE----CCSSSCSEEEEEGGGTTTSHHH-----HHHHHHHHTTTTCCEEEEC
T ss_pred             HHHHHHhCCCCeeec----CccccCCEEEEEeCCCcCCChH-----HHHHHHHHHHcCCCEEEEE
Confidence            344555555777665    7789999999877765543321     2345777778899999983

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=86.58  E-value=0.96  Score=36.48  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             HHHHHHCCCeEEEEc--CC------CCCCCCCEEEEcCC-chhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035           16 IAALKRLGVKGVEIR--KP------DQLQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus        16 ~~~L~~~G~~v~~v~--~~------~~l~~~DglIipGG-~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      .+.|++.|+++..+.  ++      +.|+++|.||+-|. ....   +.+  ...+.|++++++|+.++|+=.|
T Consensus        38 ~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~---l~~--~~~~al~~~V~~GgG~vgiH~a  106 (252)
T 1t0b_A           38 ASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDE---VKD--EVVERVHRRVLEGMGLIVLHSG  106 (252)
T ss_dssp             HHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGG---SCH--HHHHHHHHHHHTTCEEEEEGGG
T ss_pred             HHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCc---CCH--HHHHHHHHHHHcCCCEEEEccc
Confidence            567888999998865  33      22679999999542 1111   111  2467789999999999999666

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=86.57  E-value=0.81  Score=42.39  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             EEEEEecCCCHH--------------------HHHHHHHHCCCeEEEEcC-----CCCCCCCCEEEEcCCchhHH----H
Q 030035            2 VVGVLALQGSFN--------------------EHIAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGESTTM----A   52 (184)
Q Consensus         2 ~IgVl~~qG~~~--------------------~~~~~L~~~G~~v~~v~~-----~~~l~~~DglIipGG~~~~~----~   52 (184)
                      |||||.-+|+..                    -+.++|..+++++..++.     .+.|+++|.||.+|-..+.+    -
T Consensus       440 kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdDI~e~e~L~d~DVIIn~G~A~TalSgg~~  519 (759)
T 2zuv_A          440 NVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDV  519 (759)
T ss_dssp             EEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHHHHHHCCCTTCCEEEEEECTTSTTTCGGG
T ss_pred             eEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHHhccccccccCCEEEecCcchhcccCccc
Confidence            799998777432                    156889999999999862     15588999999999322211    0


Q ss_pred             HHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035           53 RLAEYHNLFPALREFVKMGKPVWGTCA   79 (184)
Q Consensus        53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~   79 (184)
                      ...  ....+.||+++.+|.-++||..
T Consensus       520 W~~--p~~~~aLR~fV~~GGgLIgVGe  544 (759)
T 2zuv_A          520 WTN--PKLVETVRAWVRGGGAFVGVGE  544 (759)
T ss_dssp             GGC--HHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCC--HHHHHHHHHHHHcCCcEEEeCC
Confidence            111  1367899999999998888863

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=82.72  E-value=8  Score=30.01  Aligned_cols=46  Identities=22%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-----------CC-C-CCCCEEEEcCCc
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP-----------DQ-L-QNVSSLIIPGGE   47 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-----------~~-l-~~~DglIipGG~   47 (184)
                      |||||+.+ |.... +.+.|.+.|++++.+.+.           ++ + .++|.+++.=+.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~   60 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQ   60 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCH
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCH
Confidence            89999987 88765 667777888887544221           11 3 478999987553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2nv0a1	195	c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac	6e-25
d1q7ra_	202	c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus	3e-24
d2abwa1	218	c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei	2e-22
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	5e-04

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.8 bits (232), Expect = 6e-25
 Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           + +GVL LQG+  EHI A++  G  G+ +++P+QL  V  LI+PGGESTTM RL + +  
Sbjct: 2   LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              LREF   GKP++GTCAGLI LA +  G        +G L+  V RN FG Q+ SFEA
Sbjct: 62  MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           +       + +G  E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 D------LTIKGLDEPFTGVFIRAPHILEAGENVEVLSEH 152

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 92.3 bits (228), Expect = 3e-24
 Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 9/160 (5%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
           M +GVL LQG+  EH+ A++  G + V ++K +QL+ +  L++PGGESTTM RL + + L
Sbjct: 7   MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 66

Query: 61  FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
              L++F   GKP++GTCAGLI LA + VG     +  +G +D TV RN FG Q +SFEA
Sbjct: 67  MEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 123

Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
           E       S +G  + F GVFIRAP +++ G  VDVLA Y
Sbjct: 124 E------LSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATY 157

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 88.1 bits (217), Expect = 2e-22
 Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 10/135 (7%)

Query: 1   MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMAR--LA 55
           + +GVL+LQG F  HI    +L +  + I   R    L     L+IPGGESTT+ R    
Sbjct: 3   ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 62

Query: 56  EYHNLFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKLGG----QELVGGLDCTVHRNF 110
           E   L+ AL  F+  + KP+WGTCAG I L+      KL      +   GGLD T+ RNF
Sbjct: 63  ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 122

Query: 111 FGSQIQSFEAELSVP 125
           +GSQ  SF   L++ 
Sbjct: 123 YGSQNDSFICSLNII 137

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 10 GSFNEH--IAALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GESTTMARLAEYHNLFPAL 64
           S N      A++ LG +   ++ P    +   S LI+PG G                 +
Sbjct: 13 ESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPI 72

Query: 65 REFVKMGKPVWGTCAGLIFLANK 87
          RE+++ GKP+ G C GL  L   
Sbjct: 73 REYIESGKPIMGICVGLQALFAG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.97
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.97
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.91
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.86
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.84
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.77
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.76
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.75
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.69
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.51
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.48
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.45
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.34
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.23
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.21
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.14
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.11
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.03
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.01
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.99
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	98.98
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.96
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.87
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	98.81
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.63
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.52
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.19
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	97.93
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	97.88
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	96.37
d1kwga3	197	A4 beta-galactosidase middle domain {Thermus therm	92.81
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.81
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	92.72
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.98
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	89.23
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.74
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	84.64
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	84.56
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	83.98

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1.3e-30  Score=205.87  Aligned_cols=155  Identities=47%  Similarity=0.832  Sum_probs=133.8

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      ||||||.+|||+.||+++|+++|+++++++.+++|+++|+||||||.+.....+.+..++.+.|+++++.++|+||||+|
T Consensus         2 ~~igv~~~~G~~~~~~~al~~~G~~~~~i~~~~~l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G   81 (195)
T d2nv0a1           2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAG   81 (195)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHH
T ss_pred             cEEEEEecCChHHHHHHHHHHCCCcEEEECCHHHHhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeecccc
Confidence            69999999999999999999999999999999999999999999998776666666668899999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      ||||++.+++   +...++|++++.+.+...+.++..+..+..+.++      +.++.+.|.|.+++..++++++++|++
T Consensus        82 ~Qll~~~~~g---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~~~~~~~~~~vla~~  152 (195)
T d2nv0a1          82 LIILAKEIAG---SDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH  152 (195)
T ss_dssp             HHHHSBCCC-------CCCCCSCEEEECCCSCTTTSEEEEEECCTTC------SSCEEEEEESCCEEEEECTTCEEEEEE
T ss_pred             HHHHHhhhcc---cccccccccccccccccccccceeeeeeecccCC------CCCceEEEEeeeEEEecCCCceeeeeE
Confidence            9999998754   4678999999999998888777777766555544      247889999999999999999999998


Q ss_pred             CCCC
Q 030035          161 PVPS  164 (184)
Q Consensus       161 ~~~~  164 (184)
                      ++..
T Consensus       153 ~~~~  156 (195)
T d2nv0a1         153 NGRI  156 (195)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            8754

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=5.5e-31  Score=208.85  Aligned_cols=154  Identities=48%  Similarity=0.816  Sum_probs=133.2

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG   80 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G   80 (184)
                      ||||||++|||+.|+.++|+++|+++++++++++|+++|+||||||..+......+..++.++|++++++|+|+||||+|
T Consensus         7 mkIgii~~~Gn~~s~~~al~~~G~~~~~v~~~~~l~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG   86 (202)
T d1q7ra_           7 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAG   86 (202)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTH
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCcEEEECCHHHHhcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehh
Confidence            89999999999999999999999999999999999999999999997655444445568899999999999999999999


Q ss_pred             HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035           81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY  160 (184)
Q Consensus        81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~  160 (184)
                      ||+|++.+.+   +..+++|++++++.++..+.+..+++......+++      ..+..+|.|.+++..++++++++|++
T Consensus        87 ~Qll~~~~~~---~~~~~lg~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~  157 (202)
T d1q7ra_          87 LILLAKRIVG---YDEPHLGLMDITVERNSFGRQRESFEAELSIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY  157 (202)
T ss_dssp             HHHHEEEEES---SCCCCCCCEEEEEECHHHHCCCCCEEEEEEETTTE------EEEEEEESSCCEEEEECTTCEEEEEE
T ss_pred             hHHhhhhccc---cceeecccccccccccccccccccceecccccccc------CCcceEEEeeccccccccceeEEeec
Confidence            9999998754   45688999999999987777776666555545443      46888999999999999999999999


Q ss_pred             CCC
Q 030035          161 PVP  163 (184)
Q Consensus       161 ~~~  163 (184)
                      ++.
T Consensus       158 ~~~  160 (202)
T d1q7ra_         158 NDR  160 (202)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            875

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.91  E-value=4.5e-25  Score=174.93  Aligned_cols=161  Identities=38%  Similarity=0.643  Sum_probs=112.5

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCC---CeEEEEcCCCCCCCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHH-HcCCcE
Q 030035            1 MVVGVLALQGSFNEHIAALKRLG---VKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFV-KMGKPV   74 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G---~~v~~v~~~~~l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~-~~g~Pv   74 (184)
                      ||||||++|||+.||.++|+++|   +++..++++++|+++|+||||||.+..  +..+.....+.+.|.++. +.|+|+
T Consensus         3 ikIGvl~l~G~~~~~~~al~~lg~~~~~v~~~~~~~~l~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPi   82 (218)
T d2abwa1           3 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPI   82 (218)
T ss_dssp             EEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCE
T ss_pred             CEEEEEeCCCcHHHHHHHHHHcCCCceEEEEeCCHHHHhhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeE
Confidence            79999999999999999999998   477888888899999999999975433  222333233456565554 479999


Q ss_pred             EEEchHHHHHHHhhhcccC----CCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe-
Q 030035           75 WGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD-  149 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~----~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~-  149 (184)
                      ||||+|||||++.+.+...    ....+++..+.++.++..+++..++...+.+....  ......++..|++.+.... 
T Consensus        83 lGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~h~~~~  160 (218)
T d2abwa1          83 WGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS--SAFKKDLTAACIRAPYIREI  160 (218)
T ss_dssp             EEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCC--TTCCTTCEEEEESCCEEEEE
T ss_pred             EEecHHHHHHHHhccCCccccccccccccccccccceecccCCcccccccceeeccCC--ccccCcccceeEEeeEEEEe
Confidence            9999999999988764322    13457888899999999998887776654432211  1112245667776665443 


Q ss_pred             cCCCcEEEEecCCC
Q 030035          150 VGPDVDVLADYPVP  163 (184)
Q Consensus       150 ~~~~v~vLa~~~~~  163 (184)
                      .+++++++|++.+.
T Consensus       161 ~~~~~~~~a~~~~~  174 (218)
T d2abwa1         161 LSDEVKVLATFSHE  174 (218)
T ss_dssp             CCTTCEEEEEEEET
T ss_pred             ecCChhhheeeccc
Confidence            46789999887653

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=9.5e-22  Score=154.25  Aligned_cols=148  Identities=20%  Similarity=0.237  Sum_probs=104.5

Q ss_pred             CEEEEEecC-CCHHHHHHHHHHCCCe-----EEEEcCCCCCCCCCEEEEcC-Cc-hhHHHHHHhcCChHHHHHHHHHcCC
Q 030035            1 MVVGVLALQ-GSFNEHIAALKRLGVK-----GVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGK   72 (184)
Q Consensus         1 m~IgVl~~q-G~~~~~~~~L~~~G~~-----v~~v~~~~~l~~~DglIipG-G~-~~~~~~l~~~~~l~~~l~~~~~~g~   72 (184)
                      |||||+.+. ||+.++.++|+++|.+     +... +..++..+|+||||| |. ++.+..|.+ .++.+.|++++++++
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~-~~~~~~~~D~lIlPG~G~f~~~~~~l~~-~~~~~~i~~~~~~~~   78 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELV-ESPRNDLYDLLFIPGVGHFGEGMRRLRE-NDLIDFVRKHVEDER   78 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEE-SSSCSCCCSEEEECCCSCHHHHHHHHHH-TTCHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEe-CChHhhccCeEEEcChHHHHHHHHhhhc-ccccccccccccccc
Confidence            999999885 4899999999998753     3333 445567899999999 75 777878876 488999999999999


Q ss_pred             cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC----CCCcceeEeeecCceEE
Q 030035           73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE----GGPETFRGVFIRAPAVL  148 (184)
Q Consensus        73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~----~~~~~~~a~firap~i~  148 (184)
                      ||||||+|||+|++.+++  .+...+++..+..+.+....          ..|+.+|+.    .........|.|+.++.
T Consensus        79 PiLGIClG~QlL~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~hs~~~~  146 (200)
T d1k9vf_          79 YVVGVCLGMQLLFEESEE--APGVKGLSLIEGNVVKLRSR----------RLPHMGWNEVIFKDTFPNGYYYFVHTYRAV  146 (200)
T ss_dssp             EEEEETHHHHTTEEEETT--STTCCCCCCEEEEEEECSCS----------SCSEEEEEEEEESSSSCCEEEEEEESEEEE
T ss_pred             eEEEEecceeEEeeeccc--Cccccccccccccccccccc----------cccccccccccccccCCceEEEEeeeeeec
Confidence            999999999999988754  34566777777766654332          234444441    11123456778887666


Q ss_pred             ecCCCcEEEEecCC
Q 030035          149 DVGPDVDVLADYPV  162 (184)
Q Consensus       149 ~~~~~v~vLa~~~~  162 (184)
                      ..+..+...+++++
T Consensus       147 ~~~~~~~~~~~~~~  160 (200)
T d1k9vf_         147 CEEEHVLGTTEYDG  160 (200)
T ss_dssp             ECGGGEEEEEEETT
T ss_pred             ccccceEEEEEECC
Confidence            55554555555443

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=3.4e-18  Score=131.65  Aligned_cols=109  Identities=21%  Similarity=0.343  Sum_probs=87.3

Q ss_pred             CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT   77 (184)
Q Consensus         1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI   77 (184)
                      |||+||.+ -||+.++.++|+++|+++.+++++++++++|++|+|||.  ++.+..+.. .++...+.+....++|+|||
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~~~i~~~d~lIlpG~g~~~~~~~~~~~-~~~~~~~~~~~~~g~pilGi   79 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQE-SGFVERVRRHLERGLPFLGI   79 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSS-SCTHHHHHHHHHTTCCEEEC
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCHHHHHHHhhhhcCCCccccchhhhccc-cCCcccccccccccchhhhh
Confidence            99999987 569999999999999999999999999999999999964  333444333 46777888888899999999


Q ss_pred             chHHHHHHHhhhcccCCCccccCcceeeeeecccC
Q 030035           78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG  112 (184)
Q Consensus        78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G  112 (184)
                      |+|||+|++...+  .....++++...++.+....
T Consensus        80 ClG~qll~~~~~e--~~~~~g~~~~~~~~~~~~~~  112 (195)
T d1ka9h_          80 CVGMQVLYEGSEE--APGVRGLGLVPGEVRRFRAG  112 (195)
T ss_dssp             THHHHTTSSEETT--STTCCCCCSSSSEEEECCSS
T ss_pred             hhhhheeeecccc--ccccCCceeeeccccccccc
Confidence            9999999987654  33456677667666665444

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.1e-18  Score=137.66  Aligned_cols=142  Identities=16%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             CEEEEEecC--CCHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHH-----HHHHhcCChHHHHHHH
Q 030035            1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTM-----ARLAEYHNLFPALREF   67 (184)
Q Consensus         1 m~IgVl~~q--G~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~-----~~l~~~~~l~~~l~~~   67 (184)
                      |||.||.-.  -+...+.+.|++.|+++.+++.      +++++++|++|++||....+     ..+..   ..++|+++
T Consensus         4 mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~~d~iii~Ggp~~~~d~~~~~~~~~---~~~~i~~~   80 (230)
T d1o1ya_           4 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKY---EFQLIEEI   80 (230)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHH---HHHHHHHH
T ss_pred             eEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcchhhCCEEEEcCCCcccccchhhhhhHH---HHHHHHHH
Confidence            888776421  1233466789999999998852      24567899999999864332     23333   56789999


Q ss_pred             HHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecccc--CCccccCCCCCcceeEeeecCc
Q 030035           68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELS--VPALASQEGGPETFRGVFIRAP  145 (184)
Q Consensus        68 ~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~--~~~~~~~~~~~~~~~a~firap  145 (184)
                      ++.++|+||||+|||+|+++++              ++|.|+..|...........  -|-+   .+.|+.+.+.+.|..
T Consensus        81 ~~~~~PilGIC~G~Qlla~alG--------------g~V~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~H~d  143 (230)
T d1o1ya_          81 LKKEIPFLGICLGSQMLAKVLG--------------ASVYRGKNGEEIGWYFVEKVSDNKFF---REFPDRLRVFQWHGD  143 (230)
T ss_dssp             HHHTCCEEEETHHHHHHHHHTT--------------CCEEECTTCCEEEEEEEEECCCCGGG---TTSCSEEEEEEEESE
T ss_pred             HHhcceEEEeecCHHHHHHHhc--------------cccccccccccccccccccccchhhh---ccCCccceEEEecce
Confidence            9999999999999999999985              35666666655544433221  1222   245678999999997


Q ss_pred             eEEecCCCcEEEEecCCC
Q 030035          146 AVLDVGPDVDVLADYPVP  163 (184)
Q Consensus       146 ~i~~~~~~v~vLa~~~~~  163 (184)
                       +.++|+++++||+.++-
T Consensus       144 -~~~lp~~~~~la~s~~~  160 (230)
T d1o1ya_         144 -TFDLPRRATRVFTSEKY  160 (230)
T ss_dssp             -EECCCTTCEEEEECSSC
T ss_pred             -eeeeccchhhhhhhcCC
Confidence             77899999999987653

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=3.4e-18  Score=133.81  Aligned_cols=144  Identities=17%  Similarity=0.233  Sum_probs=94.9

Q ss_pred             CEEEEEecCCC-HHHHHHHHHHCCCeEEEEc---CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIR---KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         1 m~IgVl~~qG~-~~~~~~~L~~~G~~v~~v~---~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      |||.|+.+... ...+.++|+++|+++++++   +..++.++|+||||||.+...+...+   +.+.++...+.++|+||
T Consensus         2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~~~~~~~dgiIl~Gg~~~~~~~~~~---~~~l~~~~~~~~~PilG   78 (196)
T d2a9va1           2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK---LGSVGKYIDDHNYPILG   78 (196)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG---HHHHHHHHHHCCSCEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHHhcCCcEEEeccccccccccch---hhhHHHHHhhcCceEEE
Confidence            58999987544 4557799999999988886   34557899999999986443322111   23344444567999999


Q ss_pred             EchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEE
Q 030035           77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV  156 (184)
Q Consensus        77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~v  156 (184)
                      ||+|||+|+.+.....           .+..+...+.....+...   ..+-  .+.++++.+.+.|...+.+++++.++
T Consensus        79 IC~G~Qll~~~~gg~~-----------~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~~~~H~~~v~~~~~~~~v  142 (196)
T d2a9va1          79 ICVGAQFIALHFGASV-----------VKAKHPEFGKTKVSVMHS---ENIF--GGLPSEITVWENHNDEIINLPDDFTL  142 (196)
T ss_dssp             ETHHHHHHHHHTTCEE-----------EEEEEEEEEEEEEEESCC---CGGG--TTCCSEEEEEEEEEEEEESCCTTEEE
T ss_pred             eehhhhhhhhcccccc-----------ccccccccccceEEEecC---Cccc--cCCCCceEEEecceeEEEeCCCccce
Confidence            9999999999875310           011111111111111110   0111  23456899999999999999999999


Q ss_pred             EEecCCC
Q 030035          157 LADYPVP  163 (184)
Q Consensus       157 La~~~~~  163 (184)
                      +|+.++-
T Consensus       143 ~a~~~~~  149 (196)
T d2a9va1         143 AASSATC  149 (196)
T ss_dssp             EEECSSC
T ss_pred             eeccccc
Confidence            9998764

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.51  E-value=3.6e-13  Score=104.26  Aligned_cols=144  Identities=17%  Similarity=0.140  Sum_probs=89.9

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC-C---CC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-Q---LQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV   74 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~-~---l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv   74 (184)
                      .|-|+.....|.. ++++|+++|+++++++..+ +   ++  ++|+++++||.....+....  .....+.++++.++|+
T Consensus         3 ~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~--~~~~~i~~~~~~~~Pi   80 (195)
T d1qdlb_           3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI--GVSLDVIKYLGKRTPI   80 (195)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHH--TTHHHHHHHHTTTSCE
T ss_pred             EEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCcccccccc--ccchhhhhhhcCCCCE
Confidence            4677776777654 5789999999999887432 2   22  67999999987544322111  2345567777889999


Q ss_pred             EEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccc-cCCccccCCCCCcceeEeeecCceEEecCCC
Q 030035           75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL-SVPALASQEGGPETFRGVFIRAPAVLDVGPD  153 (184)
Q Consensus        75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~-~~~~~~~~~~~~~~~~a~firap~i~~~~~~  153 (184)
                      ||||+|||+|+.+++.              +|.+...+.......... .-.......+.++.+.+.+.|...+...+.+
T Consensus        81 LGIClG~Qll~~~~G~--------------~v~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~h~~~~~~~~~~  146 (195)
T d1qdlb_          81 LGVCLGHQAIGYAFGA--------------KIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRP  146 (195)
T ss_dssp             EEETHHHHHHHHHTTC--------------EEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEECCCTT
T ss_pred             EEeehhhhhhhhccCC--------------EEEeecccccccccccccccccccccccCCCccceeeecceeeeeccccC
Confidence            9999999999998753              333322111111000000 0000011134556889999999888888877


Q ss_pred             cEEEEecC
Q 030035          154 VDVLADYP  161 (184)
Q Consensus       154 v~vLa~~~  161 (184)
                      ..+++...
T Consensus       147 ~~~~~~~~  154 (195)
T d1qdlb_         147 LIVDAISA  154 (195)
T ss_dssp             EEEEEEES
T ss_pred             cccceecc
Confidence            77775543

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.48  E-value=8.7e-13  Score=102.43  Aligned_cols=137  Identities=18%  Similarity=0.210  Sum_probs=90.4

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC-------CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG   71 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~-------~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g   71 (184)
                      .|-++.....|.. +++.|+++|.++++++...       ++  .+.|+|++.||.+....     ......+++.++.+
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~-----~~~~~~i~~~l~~~   76 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE-----AGCMPELLQRLRGQ   76 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGG-----STTHHHHHHHHBTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccc-----cccchhhHHhhhcC
Confidence            3566665566644 5789999999999986431       12  36789999888654321     12234567777889


Q ss_pred             CcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEE
Q 030035           72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL  148 (184)
Q Consensus        72 ~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~  148 (184)
                      +|+||||+|||+|+++++.              +|.+.   ..|.... .... .-+-+   .+.+..+.+.+.|...+.
T Consensus        77 iPiLGIClG~Q~la~~~Gg--------------~v~~~~~~~~g~~~~-~~~~-~~~l~---~~~~~~~~~~~~h~~~~~  137 (192)
T d1i7qb_          77 LPIIGICLGHQAIVEAYGG--------------QVGQAGEILHGKASA-IAHD-GEGMF---AGMANPLPVARYHSLVGS  137 (192)
T ss_dssp             BCEEEETHHHHHHHHHTTC--------------EEEEEEEEEEEEEEE-EEEC-CCGGG---TTCCSSEEEEEEEEEEEE
T ss_pred             ccEEeeeHHHHHHHHHCCC--------------eEEECCcccccceEE-Eeec-CCCce---eeccccceEEeecccccc
Confidence            9999999999999998753              22222   1221111 0000 00111   234467889999999999


Q ss_pred             ecCCCcEEEEecCC
Q 030035          149 DVGPDVDVLADYPV  162 (184)
Q Consensus       149 ~~~~~v~vLa~~~~  162 (184)
                      .++++.+++|++++
T Consensus       138 ~~~~~~~~~a~~~~  151 (192)
T d1i7qb_         138 NIPADLTVNARFGE  151 (192)
T ss_dssp             SCCTTSEEEEEETT
T ss_pred             cccceeeeecCCCC
Confidence            99999999998764

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.4e-13  Score=105.16  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=89.4

Q ss_pred             EEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCCCC-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035            2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus         2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~~l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ||.||.+-..+.. +.++|+++|+++.+++.....     ..+|+++++||.....+.     .....+++.++.++|+|
T Consensus         7 kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d~~~~~~~~~~~~giils~gp~~~~~~-----~~~~~~~~~~~~~~PiL   81 (205)
T d1gpma2           7 RILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEE-----NSPRAPQYVFEAGVPVF   81 (205)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTST-----TCCCCCGGGGTSSSCEE
T ss_pred             eEEEEECCchHHHHHHHHHHHCCCEEEEECCCCCHHHHhhcCCCeEEecCCCCccchh-----hhhhHHHHHHhCCCCEE
Confidence            8999998555554 568999999998888643221     368999999986543221     11223445556799999


Q ss_pred             EEchHHHHHHHhhhcccC-CCccccCcceeeeeecccCceeEEeeccccCCccccC--CCCCcceeEeeecCceEEecCC
Q 030035           76 GTCAGLIFLANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ--EGGPETFRGVFIRAPAVLDVGP  152 (184)
Q Consensus        76 GIC~G~QlLa~~~~~~~~-~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~--~~~~~~~~a~firap~i~~~~~  152 (184)
                      |||+|||+|+++++.... ......|...+.+..           ....+.++.++  .+.+..+..++.|...+...++
T Consensus        82 GIClG~Qlla~~~Gg~v~~~~~~~~G~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  150 (205)
T d1gpma2          82 GVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVN-----------DSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPS  150 (205)
T ss_dssp             EETHHHHHHHHHHTCEEECCSSCEEEEEEEEECS-----------CCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCT
T ss_pred             EeccchhhhhhhcCCccccccccccCcceecccc-----------ccccccccccccccCCccceeeecccccccccccc
Confidence            999999999999853210 011112211111110           00000111000  1222356778889999999999


Q ss_pred             CcEEEEecCCC
Q 030035          153 DVDVLADYPVP  163 (184)
Q Consensus       153 ~v~vLa~~~~~  163 (184)
                      ...++++.++.
T Consensus       151 ~~~~~~~~~~~  161 (205)
T d1gpma2         151 DFITVASTESC  161 (205)
T ss_dssp             TCEEEEECSSC
T ss_pred             cceeeeccCCC
Confidence            99999887764

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.4e-12  Score=100.80  Aligned_cols=84  Identities=18%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035            2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG   76 (184)
Q Consensus         2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG   76 (184)
                      ||.||.+.-.+. ..+.|++.|+.+.+++...   ++  .++|+|||+||+++..+. .   ...+.++++.+.++||||
T Consensus        41 ~i~~~D~G~k~~-ilr~l~~~~~~~~v~p~~~~~~~i~~~~pdgivlS~GPg~P~~~-~---~~~~~~~~~~~~~iPILG  115 (228)
T d1a9xb2          41 HVVAYDFGAKRN-ILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC-D---YAITAIQKFLETDIPVFG  115 (228)
T ss_dssp             EEEEEESSCCHH-HHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC-H---HHHHHHHHHTTSCCCEEE
T ss_pred             eEEEEeCCCcHH-hHhHHHhcCceEEEcCCCCCHHHHHhcCCCEEEEeCCCCccccc-h---hHHHHHHHHHhCCCCEEE
Confidence            688888744444 6699999999999886432   22  378999999997553211 0   135667787788999999


Q ss_pred             EchHHHHHHHhhhc
Q 030035           77 TCAGLIFLANKAVG   90 (184)
Q Consensus        77 IC~G~QlLa~~~~~   90 (184)
                      ||+|||+|+.+++.
T Consensus       116 IClG~Qlia~~~Gg  129 (228)
T d1a9xb2         116 ICLGHQLLALASGA  129 (228)
T ss_dssp             ETHHHHHHHHHTTC
T ss_pred             EEcChHHHHHHcCC
Confidence            99999999999864

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=1.9e-11  Score=99.54  Aligned_cols=86  Identities=26%  Similarity=0.335  Sum_probs=65.1

Q ss_pred             EEEEEecCCCH--HHHHHHHHHCCCeEEEEc------CCCCCCCCCEEEEcCCchhH--H-------HHHHhcCChHHHH
Q 030035            2 VVGVLALQGSF--NEHIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~------~~~~l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~l   64 (184)
                      ||+||.++|..  .|...+|+.+|+++..|+      ...+|+++|+|+||||+|..  .       ..+..+..+.+.+
T Consensus         8 kvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~   87 (262)
T d1t3ta2           8 KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEF   87 (262)
T ss_dssp             EEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHH
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhhhhhhhHHHHHH
Confidence            89999999955  557799999999998885      34578999999999986421  1       1112222345566


Q ss_pred             HHHHH-cCCcEEEEchHHHHHHHh
Q 030035           65 REFVK-MGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        65 ~~~~~-~g~PvlGIC~G~QlLa~~   87 (184)
                      .++++ .++||||||-|+|+|.+.
T Consensus        88 ~~f~~~~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          88 ETFFHRPQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             HHHHHSSSCEEEEETHHHHHHHTT
T ss_pred             HHHhhcCCceEEeechHHHHHHHh
Confidence            66665 589999999999999986

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.5e-11  Score=99.59  Aligned_cols=82  Identities=22%  Similarity=0.370  Sum_probs=62.6

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCC------CeEEEEc-------CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLG------VKGVEIR-------KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL   64 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G------~~v~~v~-------~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l   64 (184)
                      +||++.    ++..|.++.++|+.++      +++.++.       ..+.|.++|||++|||++..  ..   .+....+
T Consensus         5 ~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~R--G~---eGki~ai   79 (258)
T d1s1ma1           5 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYR--GV---EGMITTA   79 (258)
T ss_dssp             EEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSST--TH---HHHHHHH
T ss_pred             EEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcC--CH---HHHHHHH
Confidence            688864    6778999999998754      3445553       23568999999999998653  11   1457778


Q ss_pred             HHHHHcCCcEEEEchHHHHHHHhh
Q 030035           65 REFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        65 ~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +.+.++++|.||||+|||++.-++
T Consensus        80 ~yARen~iPfLGIClGmQ~avIE~  103 (258)
T d1s1ma1          80 RFARENNIPYLGICLGMQVALIDY  103 (258)
T ss_dssp             HHHHHTTCCEEEETHHHHHHHHHH
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHH
Confidence            888889999999999999998654

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=5.7e-11  Score=89.53  Aligned_cols=86  Identities=23%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      |||+||..+|    ++....+.|++.|+++.++...                  +++  .++|+||+|||.+..  .+..
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~--~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPE--RVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHH--HHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchh--hhcc
Confidence            9999999988    3444668899999998877421                  222  478999999996543  2333


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +..+.++|+++.++++||.+||.|..+|+++.
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aG  110 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQILISAG  110 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTHHHHHHT
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccchhhhhcC
Confidence            33578899999999999999999999999863

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=2.7e-11  Score=97.67  Aligned_cols=83  Identities=18%  Similarity=0.332  Sum_probs=60.4

Q ss_pred             EEEEEe----cCCCHHHHHHHHHHCC------CeEEEEcCC--------CCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035            2 VVGVLA----LQGSFNEHIAALKRLG------VKGVEIRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA   63 (184)
Q Consensus         2 ~IgVl~----~qG~~~~~~~~L~~~G------~~v~~v~~~--------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~   63 (184)
                      +||++.    ++..|.++.++|+.+|      +++.++.+.        +.|+++|||++|||++..  .+   .+....
T Consensus         5 ~IaiVGKY~~l~DaY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG~r--G~---eGki~a   79 (250)
T d1vcoa1           5 KIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR--GI---EGKVRA   79 (250)
T ss_dssp             EEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST--TH---HHHHHH
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCCcc--ch---HHHHHH
Confidence            688764    6788999999999864      345555421        226889999999998653  11   135667


Q ss_pred             HHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           64 LREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        64 l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      ++.+.++++|.||||+|||++.-++.
T Consensus        80 i~yARen~iPfLGIClGmQ~avIEfA  105 (250)
T d1vcoa1          80 AQYARERKIPYLGICLGLQIAVIEFA  105 (250)
T ss_dssp             HHHHHHTTCCEEEETHHHHHHHHHHH
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHH
Confidence            88888899999999999999986553

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=4.2e-10  Score=85.25  Aligned_cols=86  Identities=27%  Similarity=0.499  Sum_probs=66.8

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC--------------------CC--CCCCCEEEEcCCchhHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP--------------------DQ--LQNVSSLIIPGGESTTMARL   54 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~--------------------~~--l~~~DglIipGG~~~~~~~l   54 (184)
                      +||+||..+|    ++....+.|++.|++++++...                    ++  ..++|+||+|||....  .+
T Consensus         2 KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~--~l   79 (170)
T d1oi4a1           2 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPD--YL   79 (170)
T ss_dssp             CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHH--HH
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhh--hh
Confidence            5899999988    2444678899999998776411                    12  2478999999996543  34


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ..+..+.++|+++.++++||.+||.|..+|+++-
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~g  113 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD  113 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHT
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchHHHhhhh
Confidence            4444578999999999999999999999999864

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-10  Score=91.90  Aligned_cols=76  Identities=24%  Similarity=0.401  Sum_probs=51.0

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCC-------CCCCCEEEEcCCch----hHHHHHHhcCChHHHHHH--HHHcCCcEEEEch
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLIIPGGES----TTMARLAEYHNLFPALRE--FVKMGKPVWGTCA   79 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~-------l~~~DglIipGG~~----~~~~~l~~~~~l~~~l~~--~~~~g~PvlGIC~   79 (184)
                      .+++++++.+|+.++.+....+       ++.+||||+|||..    ..+....+  .+.+....  ....++|+||||+
T Consensus        28 ~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r--~~~~~~l~~~~~~~~~PilGIC~  105 (288)
T d1l9xa_          28 ASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAK--IFYNLSIQSFDDGDYFPVWGTCL  105 (288)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHH--HHHHHHHHHHHTTCCCCEEEETH
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccccccccch--HHHHHHHHHHHhhCCCCeEEEcH
Confidence            4678999999999998864321       35789999999852    12222222  13333222  2234579999999


Q ss_pred             HHHHHHHhhhc
Q 030035           80 GLIFLANKAVG   90 (184)
Q Consensus        80 G~QlLa~~~~~   90 (184)
                      |||+|+...++
T Consensus       106 G~Qll~~~~gG  116 (288)
T d1l9xa_         106 GFEELSLLISG  116 (288)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhCC
Confidence            99999998764

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.99  E-value=3.3e-10  Score=84.72  Aligned_cols=86  Identities=23%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CC--CCCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~--l~~~DglIipGG~~~~~~~l~~   56 (184)
                      .||+||...|    ++....++|++.|+++.++...                  .+  ..+||+||||||....   +..
T Consensus         4 rkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~---l~~   80 (156)
T d1p80a1           4 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIAD---IAD   80 (156)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHH---HHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHH---Hhc
Confidence            4899999998    5666789999999998877421                  11  1368999999996543   444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      +....++|+++.+++|||.+||.|.++|+.+-.
T Consensus        81 ~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl  113 (156)
T d1p80a1          81 NGDANYYLMEAYKHLKPIALAGDARKFKATIKI  113 (156)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTC
T ss_pred             chHHHHHHHHHHHcCCeEEEECchHHHHHHcCC
Confidence            445788999999999999999999999987643

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=98.98  E-value=7.2e-10  Score=90.83  Aligned_cols=55  Identities=16%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             CCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035           36 QNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG   90 (184)
Q Consensus        36 ~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~   90 (184)
                      .++||+||+|+....  ++...+...+.+.++.+.+..+|++|||.|+|+++.++.+
T Consensus        82 ~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgG  138 (281)
T d2ghra1          82 EKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYG  138 (281)
T ss_dssp             CCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHC
T ss_pred             ccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCC
Confidence            468999999986433  2222221235667777777789999999999999999864

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.8e-10  Score=84.08  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcC----C---------------CC---CCCCCEEEEcCCchhHHHHH
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRK----P---------------DQ---LQNVSSLIIPGGESTTMARL   54 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~----~---------------~~---l~~~DglIipGG~~~~~~~l   54 (184)
                      +||.||..+|    ++....+.|++.|+++.++..    +               ++   ..++|+|++|||.... ..+
T Consensus         2 Kkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~-~~l   80 (186)
T d1p5fa_           2 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGA-QNL   80 (186)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHH-HHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcccc-ccc
Confidence            5899999998    345567899999999988741    1               01   1478999999996432 345


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      .....+.++||++.++++++.+||.|..+|+++
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence            444457889999999999999999999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=1.6e-09  Score=82.18  Aligned_cols=88  Identities=18%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035            1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~   56 (184)
                      .||+||.++|    ++....+.|++.|+++.++...                  .+.  .++|++++|||.... ..+..
T Consensus         4 rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~-~~~~~   82 (184)
T d1sy7a1           4 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA-ETLSK   82 (184)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH-HHHHT
T ss_pred             cEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccc-ccccc
Confidence            3899999998    3455678899999999887421                  112  368999999996432 23444


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      +..+.++|+++.++++||.+||.|.++|+++..
T Consensus        83 ~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGl  115 (184)
T d1sy7a1          83 NGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  115 (184)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ccchhHHHHHHHhcCCceEEechHHHHHHHcCC
Confidence            445788999999999999999999999999753

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=8e-09  Score=79.41  Aligned_cols=84  Identities=25%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             EEEEEecCC----CHHHHHHHHHH-CCCeEEEEcCC------------------CC--CCCCCEEEEcCCchhHHHHHHh
Q 030035            2 VVGVLALQG----SFNEHIAALKR-LGVKGVEIRKP------------------DQ--LQNVSSLIIPGGESTTMARLAE   56 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~-~G~~v~~v~~~------------------~~--l~~~DglIipGG~~~~~~~l~~   56 (184)
                      ||+||.+.|    .+......|++ .|++++++...                  ++  ..++|.||||||.+...   ..
T Consensus         3 kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~---~~   79 (188)
T d2fexa1           3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEK---GT   79 (188)
T ss_dssp             EEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHH---TC
T ss_pred             EEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccc---cc
Confidence            899999887    45556777876 79998877421                  22  34799999999975432   22


Q ss_pred             cCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      +..+.++||++.+++++|.+||.|..+|+++.
T Consensus        80 ~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aG  111 (188)
T d2fexa1          80 AADLGGLVKRFRDRDRLVAGICAAASALGGTG  111 (188)
T ss_dssp             CCCCHHHHHHHHHTTCEEEEETHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhCCEEEEecchhHHHHHcC
Confidence            34689999999999999999999999999864

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=2.5e-09  Score=84.44  Aligned_cols=87  Identities=24%  Similarity=0.371  Sum_probs=61.5

Q ss_pred             EEEEEe-----cCC-CHHH---HHHHHHHCCCeEEEEcCC------------------------------------CC--
Q 030035            2 VVGVLA-----LQG-SFNE---HIAALKRLGVKGVEIRKP------------------------------------DQ--   34 (184)
Q Consensus         2 ~IgVl~-----~qG-~~~~---~~~~L~~~G~~v~~v~~~------------------------------------~~--   34 (184)
                      ||+|+-     +.| ...|   ....|++.|++++++...                                    ++  
T Consensus         3 KvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~   82 (217)
T d1vhqa_           3 KIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQAD   82 (217)
T ss_dssp             EEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCC
T ss_pred             EEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCC
Confidence            788763     234 2223   567899999999887421                                    11  


Q ss_pred             CCCCCEEEEcCCchhHHHHH----------HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035           35 LQNVSSLIIPGGESTTMARL----------AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV   89 (184)
Q Consensus        35 l~~~DglIipGG~~~~~~~l----------~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~   89 (184)
                      .++||+|+||||.+... .|          ..+..+.++++++.++|||+.+||.|.++|++...
T Consensus        83 ~~~yDaliiPGG~g~~~-~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_          83 AAELDALIVPGGFGAAK-NLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             GGGCSEEEECCSTHHHH-TSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             HhHCCEEEecCCcccHH-HHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence            24799999999975431 11          11123678899999999999999999999999854

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.9e-08  Score=74.85  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             EEEEEecCC----CHHHHHHHHHHCCCeEEEEc---CC------------------C--CCCCCCEEEEcCCchhHHHHH
Q 030035            2 VVGVLALQG----SFNEHIAALKRLGVKGVEIR---KP------------------D--QLQNVSSLIIPGGESTTMARL   54 (184)
Q Consensus         2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~---~~------------------~--~l~~~DglIipGG~~~~~~~l   54 (184)
                      |+.|+...|    ++...++.|++.|+++.++.   ..                  +  +..++|+||+|||.... ..+
T Consensus         3 ~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~-~~l   81 (195)
T d2ab0a1           3 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGA-ECF   81 (195)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHH-HHH
T ss_pred             eEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcc-ccc
Confidence            567777777    24446788999999988764   10                  1  23579999999996432 234


Q ss_pred             HhcCChHHHHHHHHHcCCcEEEEchH-HHHHHHh
Q 030035           55 AEYHNLFPALREFVKMGKPVWGTCAG-LIFLANK   87 (184)
Q Consensus        55 ~~~~~l~~~l~~~~~~g~PvlGIC~G-~QlLa~~   87 (184)
                      .++..+.++||++.+++++|.+||.| ..+|+++
T Consensus        82 ~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          82 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             cccHHHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence            44445788999999999999999999 5788775

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=5.2e-08  Score=76.62  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHCCCeEEEEcCC-------------------------------C--CCCCCCEEEEcCCchhHHHHHHhcC
Q 030035           12 FNEHIAALKRLGVKGVEIRKP-------------------------------D--QLQNVSSLIIPGGESTTMARLAEYH   58 (184)
Q Consensus        12 ~~~~~~~L~~~G~~v~~v~~~-------------------------------~--~l~~~DglIipGG~~~~~~~l~~~~   58 (184)
                      +....+.|+++|++|+++...                               +  +.++||+|+||||.+.. ..+..+.
T Consensus        28 ~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~-~~l~~~~  106 (221)
T d1u9ca_          28 FAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTM-FDFPDNE  106 (221)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHH-HHSTTCH
T ss_pred             HHHHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchh-hcchhhH
Confidence            444668899999999988521                               1  13579999999998643 3444444


Q ss_pred             ChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           59 NLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        59 ~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      .+.+.++++.+++|||.+||.|.++|..+-
T Consensus       107 ~l~~li~~~~~~~k~iaAIChgp~~l~~a~  136 (221)
T d1u9ca_         107 TLQYVLQQFAEDGRIIAAVCHGPSGLVNAT  136 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             HHHHHHHHHHhccCcceeecccceeeeccc
Confidence            577889999999999999999999998753

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=6.9e-07  Score=70.82  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA   88 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~   88 (184)
                      ++||+|+||||.+. +..+..+..+.+.|+++.++|+||.+||.|.++|+...
T Consensus        96 ~~ydav~ipGG~g~-~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~  147 (236)
T d1qvwa_          96 DDYQIFMASAGHGT-LFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLT  147 (236)
T ss_dssp             GGCSEEEECCSTTH-HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCB
T ss_pred             hHCCEEEEeCCccc-hhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHh
Confidence            57999999999764 33555555577889999999999999999999887653

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=2.2e-05  Score=61.44  Aligned_cols=106  Identities=16%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             EEEEEec---CCCHHHHH----HHHHHCCCeEEEEcCCCC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035            2 VVGVLAL---QGSFNEHI----AALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM   70 (184)
Q Consensus         2 ~IgVl~~---qG~~~~~~----~~L~~~G~~v~~v~~~~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~   70 (184)
                      ||.++-.   ..+..++.    +.++++|+++..+...++    |+++|+|++.||....+.+.....++.+.|++++++
T Consensus        33 ~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~~~~~l~~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~  112 (229)
T d1fyea_          33 SAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKR  112 (229)
T ss_dssp             EEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSCHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             eEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEecccccHHHHHhhCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHc
Confidence            6777632   33443333    456678999888865443    568999999999765554444446899999999999


Q ss_pred             CCcEEEEchHHHHHHHhhhccc------CCCccccCcceeeee
Q 030035           71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVH  107 (184)
Q Consensus        71 g~PvlGIC~G~QlLa~~~~~~~------~~~~~~LG~ldv~v~  107 (184)
                      |+++.|+-+|..+++..+....      ....++||++|..+.
T Consensus       113 G~vi~G~SAGA~v~~~~~~~~~~~~~~~~~~~~glgl~~~~~~  155 (229)
T d1fyea_         113 GALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQIN  155 (229)
T ss_dssp             TCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEE
T ss_pred             CCeEEEeChhHhhcCccccccCCCCccCCcccccccccccccc
Confidence            9999999999999987664211      123568888887665

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.8e-06  Score=68.14  Aligned_cols=51  Identities=22%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035           36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK   87 (184)
Q Consensus        36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~   87 (184)
                      .+||+|++|||.+. +..|..+..+.+.|+.+.++|+||..||.|...|..+
T Consensus       140 ~dYdav~iPGGhG~-~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a  190 (279)
T d1n57a_         140 SEYAAIFVPGGHGA-LIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL  190 (279)
T ss_dssp             CSEEEEEECCSGGG-GSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred             ccccEEEecCCccc-hhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhc
Confidence            47999999999864 3345554557788999999999999999999988765

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.37  E-value=0.0026  Score=50.01  Aligned_cols=70  Identities=29%  Similarity=0.462  Sum_probs=53.4

Q ss_pred             CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCC-CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~-~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ||++|+.- ++....+.+.|++.+.++.++..+ ++++++|.+|.-||-++.+.          .++.+ +..+|++||=
T Consensus         1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~~~~~~~~~D~vi~iGGDGT~L~----------a~~~~-~~~~PilGIn   69 (249)
T d1z0sa1           1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILR----------ILQKL-KRCPPIFGIN   69 (249)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHH----------HHTTC-SSCCCEEEEE
T ss_pred             CeEEEEECCchhHHHHHHHHHhcCCeEEEecCccccccCCCEEEEECCcHHHHH----------HHHHh-cCCCcEEEEC
Confidence            89998775 456777889999999999988654 44778999999999887532          23322 3468999998


Q ss_pred             hHH
Q 030035           79 AGL   81 (184)
Q Consensus        79 ~G~   81 (184)
                      .|.
T Consensus        70 ~G~   72 (249)
T d1z0sa1          70 TGR   72 (249)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            875

>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: A4 beta-galactosidase middle domain
domain: A4 beta-galactosidase middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.81  E-value=0.14  Score=38.08  Aligned_cols=56  Identities=21%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035           13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ..+.++|+++|+.+.+++..++|++|+.||+|.=....          .+.+++++++|..++..+
T Consensus        35 ~~~Y~al~~~gv~vDiv~~~~dls~Yklvv~P~l~~~~----------~~~l~~~v~~GG~lv~g~   90 (197)
T d1kwga3          35 YLFYSALRRLGLDVDVVPPGASLRGYAFAVVPSLPIVR----------EEALEAFREAEGPVLFGP   90 (197)
T ss_dssp             HHHHHHHHTTTCCEEEECTTSCCTTCSEEEESCCSSCC----------HHHHHHHHTCSSCEEECT
T ss_pred             HHHHHHHHHcCCceeecCCCCCcccCCEEEEcchHhCC----------HHHHHHHHHCCCEEEEec
Confidence            33557899999999999988899999999999743222          134566777766565554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.028  Score=36.71  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=45.0

Q ss_pred             CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC----------------------CCCCCCEEEEcCCchhHHHHHHhcC
Q 030035            1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD----------------------QLQNVSSLIIPGGESTTMARLAEYH   58 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~----------------------~l~~~DglIipGG~~~~~~~l~~~~   58 (184)
                      .||.|+.+...=.+.++.|.+.|.++....+..                      .+.++|.+|++-|.+..        
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~~--------   77 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALA--------   77 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCTT--------
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCCC--------
Confidence            368888886666678899999999998875311                      02346777775454322        


Q ss_pred             ChHHHHHHHHHcCCcEEE
Q 030035           59 NLFPALREFVKMGKPVWG   76 (184)
Q Consensus        59 ~l~~~l~~~~~~g~PvlG   76 (184)
                        -+.++++.+.|+||.|
T Consensus        78 --~~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          78 --HPSLSAAADAGIEIVG   93 (93)
T ss_dssp             --SHHHHHHHHTTCEEEC
T ss_pred             --CHHHHHHHHcCCCeEC
Confidence              2457777788999986

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.72  E-value=0.15  Score=40.43  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=47.2

Q ss_pred             CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC----------------------------CCCCCCCEEEEcCC
Q 030035            1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRKP----------------------------DQLQNVSSLIIPGG   46 (184)
Q Consensus         1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~----------------------------~~l~~~DglIipGG   46 (184)
                      .||+|+.-.+.      ..++.+.|++.|+++.+....                            +..+++|.+|.-||
T Consensus         1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGG   80 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   80 (302)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcC
Confidence            37888877663      344667788899988765210                            11246799999999


Q ss_pred             chhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035           47 ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL   81 (184)
Q Consensus        47 ~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~   81 (184)
                      -+|.          ...++.+...++||+||=.|.
T Consensus        81 DGT~----------L~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          81 DGTF----------LRAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             HHHH----------HHHHHHHHHHTCCEEEEECSS
T ss_pred             ChHH----------HHHHHHhhccCCeEEEeCCCc
Confidence            8875          333445555689999998884

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.98  E-value=0.23  Score=32.29  Aligned_cols=51  Identities=16%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             HHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035           15 HIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ..+.|++.|+++..-.+++.+.+.|.+|.+.+-+..          -..++++.+.|+||+
T Consensus        38 ~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~----------npel~~A~~~gIpv~   88 (89)
T d1j6ua1          38 RTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDD----------NPEIVRARMERVPIE   88 (89)
T ss_dssp             HHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTT----------CHHHHHHHHTTCCEE
T ss_pred             hHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCC----------CHHHHHHHHcCCCcc
Confidence            334455555554433455668889999988775432          123566667899986

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.23  E-value=0.3  Score=35.66  Aligned_cols=30  Identities=10%  Similarity=0.096  Sum_probs=22.2

Q ss_pred             CEEEEEec--CCCHHHHH----HHHHHCCCeEEEEc
Q 030035            1 MVVGVLAL--QGSFNEHI----AALKRLGVKGVEIR   30 (184)
Q Consensus         1 m~IgVl~~--qG~~~~~~----~~L~~~G~~v~~v~   30 (184)
                      |||.|+.+  .||-..+.    +.+++.|+++.+++
T Consensus         3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~   38 (201)
T d1ydga_           3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLK   38 (201)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            89999865  57755543    55678999998875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.14  E-value=0.54  Score=32.87  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC--------------------CCCCCCCEEEEcC
Q 030035            1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP--------------------DQLQNVSSLIIPG   45 (184)
Q Consensus         1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~--------------------~~l~~~DglIipG   45 (184)
                      |||||+.+ |+... +.+.|++.|.++..+...                    +.++++|.+|+.-
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC
Confidence            99999976 88766 568899999988766321                    2346899998854

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.74  E-value=0.66  Score=30.22  Aligned_cols=51  Identities=16%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             HHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035           15 HIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW   75 (184)
Q Consensus        15 ~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ..+.|++.|+.+..-..++.+++.|.+|++.+-+..          -..++++.+.|+||+
T Consensus        45 ~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~----------npel~~A~~~gipii   95 (96)
T d1p3da1          45 VTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDD----------NPELVTSKQKRIPVI   95 (96)
T ss_dssp             HHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTT----------CHHHHHHHHTTCCEE
T ss_pred             hhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCC----------CHHHHHHHHcCCCEE
Confidence            334444455554443444557788988887764432          123556667899986

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.64  E-value=0.58  Score=35.52  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             HHHHHHHHHCCCeEEEEc----------CCCCCCCCCEEEEcCCchhHH----HHHHh---cCChHHHHHHHHHcCCcEE
Q 030035           13 NEHIAALKRLGVKGVEIR----------KPDQLQNVSSLIIPGGESTTM----ARLAE---YHNLFPALREFVKMGKPVW   75 (184)
Q Consensus        13 ~~~~~~L~~~G~~v~~v~----------~~~~l~~~DglIipGG~~~~~----~~l~~---~~~l~~~l~~~~~~g~Pvl   75 (184)
                      ..+.++|+..|+++....          +.++|.+||.|||..-.....    +...+   ..+..+.|++++++|.=++
T Consensus        33 ~~l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~~yDvvIl~D~~a~~~~~~~~~~~~~~~~p~ql~~L~~fV~~GGGLi  112 (246)
T d2gk3a1          33 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLL  112 (246)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHhCCceEEEecchhhhhhCccCHHHHhcCCEEEEecCchhhcccCcchhhcccCCHHHHHHHHHHHHhCCCEE
Confidence            457899999999999863          124467899999987433221    01111   1235789999999987666


Q ss_pred             EEc
Q 030035           76 GTC   78 (184)
Q Consensus        76 GIC   78 (184)
                      .++
T Consensus       113 ~ig  115 (246)
T d2gk3a1         113 MIG  115 (246)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            664

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=84.56  E-value=0.33  Score=33.65  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             CEEEEEecCCCHHHHH-HHHHHCCCeEEEEc
Q 030035            1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIR   30 (184)
Q Consensus         1 m~IgVl~~qG~~~~~~-~~L~~~G~~v~~v~   30 (184)
                      |||+|+.. |+...++ ..|.+.|.+|..+.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~   30 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWL   30 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEE
Confidence            99999987 9988865 77899999998773

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.98  E-value=0.94  Score=30.59  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             EecCCCHHH---HHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035            6 LALQGSFNE---HIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC   78 (184)
Q Consensus         6 l~~qG~~~~---~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC   78 (184)
                      ..-.|...+   +.+.+++...+..    ++.+++.|.+|+..|.-+.....     ....|+.+.+.||||+||=
T Consensus         8 ~~~~~~~~d~~~~~er~e~~~~~Wi----d~~~~~~~vvIVL~G~yt~~r~W-----I~~EI~~A~~~~KpIIgV~   74 (111)
T d1eiwa_           8 YITEGEVEDYRVFLERLEQSGLEWR----PATPEDADAVIVLAGLWGTRRDE-----ILGAVDLARKSSKPIITVR   74 (111)
T ss_dssp             EECCCCSHHHHHHHHHHHHHCSCEE----ECCSSSCSEEEEEGGGTTTSHHH-----HHHHHHHHTTTTCCEEEEC
T ss_pred             EEecCchhhHHHHHHHHHHhhhcch----hccccCCCEEEEEeeccccCCHH-----HHHHHHHHHHcCCCeEEEE
Confidence            344565444   5556666644433    23457889999988865554332     2234677777899999984