Citrus Sinensis ID: 030036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcHHHcccHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
malkplvskctlphlyptfmcyqqpafrskgmpqnvlqcnisRRIGVIAVTASTMLAREAIFREDIANAFefrmvapdqtveQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLInnkpaterpqLRKLYSDLFNGvtkldyaardkdvsrvHQCYENVVVALDSILSRL
Flexible Loop (DISEMBL)
malkplvskctlphlYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLInnkpaterpqlRKLYSDLFNGVTKLDYaardkdvsrvhQCYENVVVALDSILSRL
Low Complexity Region (SEG)
MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Disordered region (IsUnstruct)
*****LVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEV**********LKQDIYTLINNKPAT*RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI****
Disordered Region (DISOPRED)
*********CTLPHLYPTFMCY************************VIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQ****IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIY****************LYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Disordered Region (DISEMBL)
MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLES***********ASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Disordered Region (DISPRO)
*ALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q2V4B2	187	PsbQ-like protein 3, chlo	yes	no	0.804	0.791	0.392	6e-24
Q9XFT3	224	Oxygen-evolving enhancer	no	no	0.722	0.593	0.302	1e-12
Q41932	230	Oxygen-evolving enhancer	no	no	0.722	0.578	0.280	2e-10
P12301	232	Oxygen-evolving enhancer	N/A	no	0.603	0.478	0.278	4e-09
Q41048	217	Oxygen-evolving enhancer	N/A	no	0.554	0.470	0.294	4e-09
Q41806	213	Oxygen-evolving enhancer	N/A	no	0.554	0.478	0.294	5e-09
Q0D5P8	217	Oxygen-evolving enhancer	no	no	0.576	0.488	0.324	6e-09
P83646	217	Oxygen-evolving enhancer	N/A	no	0.576	0.488	0.324	6e-09
Q9SGH4	220	PsbQ-like protein 2, chlo	no	no	0.527	0.440	0.268	0.0001
Q9XI73	190	PsbQ-like protein 1, chlo	no	no	0.733	0.710	0.239	0.0003

>sp|Q2V4B2|PQL3_ARATH PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 10/158 (6%)

Query: 37  LQCNISRRIGVIAVTASTMLAREAIF----REDIANAFEFRMVA-----PDQTVEQAESG 87
           L  + SRR   + +T S  L  +  F    R   ANA +F         P++TVE A+ G
Sbjct: 30  LSIDTSRRRRDVLLTISGTLIPQLFFFDRKRSSSANAADFFNFGAPPPEPERTVELAQEG 89

Query: 88  IRYHAQSLLHVKALL-ESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSD 146
           +R +A+++  +K ++ E + W E  K LR S++++KQD Y +I  KP  +RP  R LYS 
Sbjct: 90  LRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRSLYSS 149

Query: 147 LFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           LFN +TK+DYAARD D ++V + Y N+V  LD I  R+
Sbjct: 150 LFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 81/139 (58%), Gaps = 6/139 (4%)

Query: 46  GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
           G+ A T ++  AR+  F   + + F  + + P +   +A    +  A+ +++VK L++ +
Sbjct: 91  GLPAGTDNSDQARD--FALALKDRFYLQPLPPTEAAARA----KESAKDIINVKPLIDRK 144

Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
           +W  VQ  LR+ ++ L+ D+ T+I++KP  E+  L+ L + LF+ +  LDYAA+ K  S+
Sbjct: 145 AWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQ 204

Query: 166 VHQCYENVVVALDSILSRL 184
             + Y   V AL+ +L++L
Sbjct: 205 AEKYYAETVSALNEVLAKL 223

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 77/139 (55%), Gaps = 6/139 (4%)

Query: 46  GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
           G +  T ++  AR+  F   + + F  + ++P +   +A+      A+ +++VK+ ++ +
Sbjct: 97  GGLPGTDNSDQARD--FSLALKDRFYIQPLSPTEAAARAKD----SAKEIINVKSFIDKK 150

Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
           +W  VQ  LR  ++ L+ D+ T+I+ KP  E+  L+ L + LF  +  LDYAAR K    
Sbjct: 151 AWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPD 210

Query: 166 VHQCYENVVVALDSILSRL 184
             + Y   V +L+++L++L
Sbjct: 211 AEKYYSETVSSLNNVLAKL 229

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 70  FEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLI 129
           F  + + P +  ++A    +  A  +L+VK  ++ ++W  +Q  LR  ++ L+ D+ T+I
Sbjct: 121 FYLQPLPPTEAAQRA----KVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 176

Query: 130 NNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           + KP  E+  L++L S LF+ +  LD+AA+ K  +   + Y   V  ++ +L++L
Sbjct: 177 SAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

Spinacia oleracea (taxid: 3562)

>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 60/102 (58%)

Query: 83  QAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRK 142
           +A + ++  AQ ++++K L++ ++W  VQ  LR  ++ L+ D+ T+I +KP  E+  L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 143 LYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           L   LF+ +  LD+AA+ K      + +     AL  +L++L
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

Zea mays (taxid: 4577)

>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 60/102 (58%)

Query: 83  QAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRK 142
           +A + ++  AQ ++++K L++ ++W  VQ  LR  ++ L+ D+ T+I +KP  E+  L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 143 LYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           L   LF+ +  LD+AA+ K      + +     AL  +L++L
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

Zea mays (taxid: 4577)

>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 79  QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
           Q +  AE+  R    AQ ++++K L+E + W  V+  LR  ++ L+ D+ T+IN+KP  E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168

Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           +  L+ L   LF  +  LD+AA+ K      + Y     AL  +L++L
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 79  QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
           Q +  AE+  R    AQ ++++K L+E + W  V+  LR  ++ L+ D+ T+IN+KP  E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168

Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           +  L+ L   LF  +  LD+AA+ K      + Y     AL  +L++L
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 53/97 (54%)

Query: 88  IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147
           ++ +A  LL ++ L+  ++ + V+K LR  S  L  D   LI+   + ++  L  L + L
Sbjct: 123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182

Query: 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           F+   KL+ AA+ K+++    CY++    L  +++R+
Sbjct: 183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 47  VIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESES 106
           VI    S+ LA+E   +    +  + +   P  + E A + I+  A+ L  ++ +L+  S
Sbjct: 55  VIGGATSSALAQE---KWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMS 111

Query: 107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRV 166
           W  V   +R   A L QD+   +N  P + R    +  ++L   +++LD+  R   V   
Sbjct: 112 WRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYES 171

Query: 167 HQCYENVVVALDSILSRL 184
           +  YE  + ++D+++  L
Sbjct: 172 YLYYEKTLKSIDNVVEFL 189

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
225446877	184	PREDICTED: oxygen-evolving enhancer prot	1.0	1.0	0.570	1e-55
147853522	184	hypothetical protein VITISV_006311 [Viti	1.0	1.0	0.570	2e-55
224069286	186	predicted protein [Populus trichocarpa]	1.0	0.989	0.559	4e-52
255582249	179	calcium ion binding protein, putative [R	0.951	0.977	0.590	1e-50
358248594	189	uncharacterized protein LOC100784902 [Gl	1.0	0.973	0.550	3e-50
356569902	186	PREDICTED: oxygen-evolving enhancer prot	0.994	0.983	0.564	9e-50
255637457	186	unknown [Glycine max]	0.994	0.983	0.553	9e-49
449462369	184	PREDICTED: psbQ-like protein 3, chloropl	0.771	0.771	0.540	4e-38
357460629	230	Oxygen-evolving enhancer protein 3-2 [Me	0.853	0.682	0.466	5e-33
357164772	184	PREDICTED: oxygen-evolving enhancer prot	0.853	0.853	0.448	1e-32

>gi|225446877|ref|XP_002283897.1| PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic-like [Vitis vinifera]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 138/184 (75%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREA 60
           MAL P   + +  +L P F+C+ +P+F  +  P+ V + N +RRIG IA  A  +LAREA
Sbjct: 1   MALVPRFVQSSPLYLSPNFICHLKPSFLLRENPEKVPKSNFTRRIGAIATMAKVLLAREA 60

Query: 61  IFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSAS 120
           IF   IAN F+F+MVAP QT+E+AESGIR HA +LL VKAL+ESE+W ++QKALR SS+ 
Sbjct: 61  IFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVKALIESEAWKDMQKALRKSSSL 120

Query: 121 LKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180
           LKQDIYT+I +KP + RPQLRKLYS+LFN VT+LDYAARD D ++V + YE + + LD I
Sbjct: 121 LKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAARDNDATQVWEYYEKIAITLDDI 180

Query: 181 LSRL 184
           LSR+
Sbjct: 181 LSRI 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853522|emb|CAN78534.1| hypothetical protein VITISV_006311 [Vitis vinifera]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 138/184 (75%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREA 60
           MAL P   + +  +L PT +C+ +P+F  +  P+ V + N +RRIG IA  A  +LAREA
Sbjct: 1   MALVPRFVQSSPLYLSPTIICHLKPSFLLRENPEKVPKSNFTRRIGAIATMAKVLLAREA 60

Query: 61  IFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSAS 120
           IF   IAN F+F+MVAP QT+E+AESGIR HA +LL VKAL+ESE+W ++QKALR SS+ 
Sbjct: 61  IFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVKALIESEAWKDMQKALRKSSSL 120

Query: 121 LKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180
           LKQDIYT+I +KP + RPQLRKLYS+LFN VT+LDYAARD D ++V + YE + + LD I
Sbjct: 121 LKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAARDNDATQVWEYYEKIAITLDDI 180

Query: 181 LSRL 184
           LSR+
Sbjct: 181 LSRI 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069286|ref|XP_002302946.1| predicted protein [Populus trichocarpa] gi|222844672|gb|EEE82219.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 134/186 (72%), Gaps = 2/186 (1%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKG-MPQNVLQCNISRRIGVIAVTASTMLARE 59
           MAL+ LVS   + H  P F C  +P F+SKG MP  VL+ NISRRIG IA  A+ +L +E
Sbjct: 1   MALRSLVSVQNVTHNPPIFTCCLKPTFQSKGHMPHKVLRSNISRRIGAIAAVATIVLVKE 60

Query: 60  AIFREDIANAFEFRMVAPDQ-TVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASS 118
           A+F +DIAN  EF+   PD+ +VE+AESG+R + QSLL +K LL S+SW E QK LR  S
Sbjct: 61  AMFSQDIANGLEFKFATPDRRSVEEAESGVRDYEQSLLQLKDLLGSQSWKEAQKVLRRRS 120

Query: 119 ASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALD 178
           ++LK D+Y +I +KP  +R QLR LY++LFN VTKLDYA R+KDVS V QCYEN+V + D
Sbjct: 121 SNLKLDLYAVIESKPGKDRTQLRTLYANLFNNVTKLDYAVREKDVSLVWQCYENIVASYD 180

Query: 179 SILSRL 184
            ILSR+
Sbjct: 181 HILSRI 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582249|ref|XP_002531916.1| calcium ion binding protein, putative [Ricinus communis] gi|223528426|gb|EEF30460.1| calcium ion binding protein, putative [Ricinus communis]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 134/188 (71%), Gaps = 13/188 (6%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNIS--RRIG-VIAVTASTMLA 57
           MA++PLVS        PT +C Q+P F  K M   + Q NI+  RRIG V+A  AS ++A
Sbjct: 1   MAVRPLVSNT------PTLICCQKPYFEPKEM---LPQPNITSRRRIGTVLAAVASAVIA 51

Query: 58  REAI-FREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRA 116
           REAI  R + A  F+ R+VAP+ T+E AESGIR HA+SLL +KALLESESW E QK LR 
Sbjct: 52  REAISLRPEAAFGFDLRLVAPEPTLEMAESGIRGHAESLLGIKALLESESWPEAQKELRK 111

Query: 117 SSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVA 176
           SS++LK DIYT+I +KP  ERPQLR LY DLFN VTKLDYAAR+KD  RV QCY N+V A
Sbjct: 112 SSSNLKIDIYTIIQSKPGNERPQLRMLYFDLFNNVTKLDYAARNKDAQRVWQCYGNIVAA 171

Query: 177 LDSILSRL 184
           LD IL R+
Sbjct: 172 LDDILGRI 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248594|ref|NP_001239652.1| uncharacterized protein LOC100784902 [Glycine max] gi|255638735|gb|ACU19672.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 131/189 (69%), Gaps = 5/189 (2%)

Query: 1   MALKPLVSKCTLPHLYPTFMC--YQQPAFRSKGMPQNVLQCNI---SRRIGVIAVTASTM 55
           M L+ L+ +  L HL+PTF C    +P+F+      N  + ++   SRR+GV+A   S +
Sbjct: 1   MELRSLILQPNLTHLFPTFTCCVKLKPSFQHLQNNSNNKELSLKIRSRRVGVLAAITSLI 60

Query: 56  LAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALR 115
           L    IFR   ANAFEF+ VAPD TVE+A SG+R HAQ LLHV+ LLE ESW   QK LR
Sbjct: 61  LGGNGIFRTQSANAFEFKFVAPDMTVEEALSGVRGHAQDLLHVRDLLELESWRAAQKTLR 120

Query: 116 ASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVV 175
            SSA LK+DIY +I +KP  ER QLRKLYS LFN VT+LDYAARDKD  +V QCY+N+VV
Sbjct: 121 QSSAILKKDIYIIIQSKPGIERAQLRKLYSTLFNNVTRLDYAARDKDGPQVWQCYKNIVV 180

Query: 176 ALDSILSRL 184
           A++ ILSR+
Sbjct: 181 AVNDILSRI 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569902|ref|XP_003553133.1| PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic-like [Glycine max]

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 127/186 (68%), Gaps = 3/186 (1%)

Query: 1   MALKPLVSKCTLPHLYPTFMC--YQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAR 58
           M L  L+ +  L HL+PTF C    +P+F+     +  L   ISRR+GV+A   S +L  
Sbjct: 1   MELTSLILQPNLTHLFPTFTCCVKLKPSFQHLQNNKE-LSLKISRRVGVLAAITSLILGV 59

Query: 59  EAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASS 118
              F    ANAFEF+ VAPD TVE A SG+R HAQ LLHV+ LLE ESW   QK LR SS
Sbjct: 60  NGNFGTQSANAFEFKFVAPDMTVEDALSGVRGHAQDLLHVRDLLELESWRAAQKTLRQSS 119

Query: 119 ASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALD 178
           A LK+DIYT+I +KP  ER QLRKLYS LFN VT+LDYAARDKD  +V QCYEN+VVA++
Sbjct: 120 AILKKDIYTIIQSKPGIERAQLRKLYSTLFNNVTRLDYAARDKDGPQVWQCYENIVVAVN 179

Query: 179 SILSRL 184
            ILSR+
Sbjct: 180 DILSRI 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637457|gb|ACU19056.1| unknown [Glycine max]

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 126/186 (67%), Gaps = 3/186 (1%)

Query: 1   MALKPLVSKCTLPHLYPTFMC--YQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAR 58
           M L  L+ +  L HL+PTF C    +P+F+     +  L   ISRR+GV+A   S +L  
Sbjct: 1   MELTSLILQPNLTHLFPTFTCCVKLKPSFQHLQNNKE-LSLKISRRVGVLAAITSLILGV 59

Query: 59  EAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASS 118
              F    ANAFEF+ VAPD TVE A SG+R HAQ LLHV+ LLE ESW   QK LR SS
Sbjct: 60  NGNFGTQSANAFEFKFVAPDMTVEDALSGVRGHAQDLLHVRDLLELESWRAAQKTLRQSS 119

Query: 119 ASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALD 178
           A LK+DIYT+I +KP  ER QLRKLYS  F+ VT+LDYAARDKD  +V QCYEN+VVA++
Sbjct: 120 AILKKDIYTIIQSKPGIERAQLRKLYSTFFDNVTRLDYAARDKDGPQVWQCYENIVVAVN 179

Query: 179 SILSRL 184
            ILSR+
Sbjct: 180 DILSRI 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462369|ref|XP_004148913.1| PREDICTED: psbQ-like protein 3, chloroplastic-like [Cucumis sativus] gi|449506741|ref|XP_004162835.1| PREDICTED: psbQ-like protein 3, chloroplastic-like [Cucumis sativus]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 114/148 (77%), Gaps = 6/148 (4%)

Query: 39  CNISRRIGV--IAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLL 96
            NISRR+G+  IA+ AS++ A  A    ++ANA + +++AP+Q++++AESGIR HA++LL
Sbjct: 41  TNISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALL 96

Query: 97  HVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDY 156
            V++L+ESE+W E QK LR++SA LKQD+YT+I  KP  ERP LRKLYS LFN VT++DY
Sbjct: 97  QVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDY 156

Query: 157 AARDKDVSRVHQCYENVVVALDSILSRL 184
           AARDKDV  V + Y+ + +A+  ILSR+
Sbjct: 157 AARDKDVGGVWESYKKMEMAISDILSRI 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460629|ref|XP_003600596.1| Oxygen-evolving enhancer protein 3-2 [Medicago truncatula] gi|355489644|gb|AES70847.1| Oxygen-evolving enhancer protein 3-2 [Medicago truncatula]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 108/178 (60%), Gaps = 21/178 (11%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRR-IGVIAVTASTMLARE 59
           M L+    +  + HL+P F C  +P +  + + Q      ISRR +G+I        + E
Sbjct: 1   MELRTFTLQPNMTHLFPKFTCCVKP-YNFQHLHQKNFSLKISRRNLGLI-------FSGE 52

Query: 60  AIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSA 119
            IFR   ANAF+F +V PDQTVE+A++ +R HAQ LL V+ LLES+SW   QK LR SSA
Sbjct: 53  CIFRTKGANAFDFGLVVPDQTVEEAQNVVRVHAQDLLQVRDLLESKSWKIAQKELRRSSA 112

Query: 120 SLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVAL 177
            LK+DIYT+I NKP +ER QLR            LDYAARD+D   V Q YEN+VVA+
Sbjct: 113 LLKKDIYTIIQNKPGSERSQLR------------LDYAARDQDGPEVWQRYENIVVAV 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164772|ref|XP_003580161.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Brachypodium distachyon]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 114/165 (69%), Gaps = 8/165 (4%)

Query: 24  QPAFRSKG--MPQNVLQCNISRRIGVI--AVTASTMLAREAIFREDIANAFEFRMVAPDQ 79
           +P   S G   PQ  +  + SRR+ ++  A+ AS +L          A AF+ R+  P+Q
Sbjct: 23  KPPSPSNGHQQPQEPIITSRSRRLAIVGTALMASHLLPPAT----GSAGAFDLRLTVPEQ 78

Query: 80  TVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQ 139
           + E+AE+ +R  A++L+ V+ L+++ SW E+Q +LRAS+A+LKQD+Y +IN KPA++RP+
Sbjct: 79  SSEEAEAVVRTDARNLVRVRDLIDARSWRELQASLRASAANLKQDLYAIINAKPASQRPE 138

Query: 140 LRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           LR+LYSDLFN VT+LDYAARDKD  +V + Y N+V A+D I +++
Sbjct: 139 LRRLYSDLFNSVTRLDYAARDKDELQVKEYYGNMVAAIDQIFAKI 183

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:1009023157	187	PQL3 "PsbQ-like 3" [Arabidopsi	0.929	0.914	0.368	1.4e-23
TAIR|locus:2127393	224	PSBQA "photosystem II subunit	0.722	0.593	0.302	4.9e-14
TAIR|locus:2115703	230	PSBQ-2 "photosystem II subunit	0.722	0.578	0.280	2.4e-12
UNIPROTKB|P83646	217	OsI_025465 "Oxygen-evolving en	0.576	0.488	0.324	3.2e-10
TAIR|locus:2035775	190	PnsL2 "Photosynthetic NDH subc	0.733	0.710	0.239	4.9e-05
TAIR|locus:2096707	220	PnsL3 "Photosynthetic NDH subc	0.527	0.440	0.268	0.00012

TAIR|locus:1009023157 PQL3 "PsbQ-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 67/182 (36%), Positives = 100/182 (54%)

Query:    13 PHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIF----REDIAN 68
             P L+ TF   Q  +  +       L  + SRR   + +T S  L  +  F    R   AN
Sbjct:     7 PPLHFTFFHNQDSSIDTSDS-NLALSIDTSRRRRDVLLTISGTLIPQLFFFDRKRSSSAN 65

Query:    69 AFEFRMVA-----PDQTVEQAESGIRYHAQSLLHVKALL-ESESWSEVQKALRASSASLK 122
             A +F         P++TVE A+ G+R +A+++  +K ++ E + W E  K LR S++++K
Sbjct:    66 AADFFNFGAPPPEPERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMK 125

Query:   123 QDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILS 182
             QD Y +I  KP  +RP  R LYS LFN +TK+DYAARD D ++V + Y N+V  LD I  
Sbjct:   126 QDFYLIIQAKPPKDRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFP 185

Query:   183 RL 184
             R+
Sbjct:   186 RI 187

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

TAIR|locus:2127393 PSBQA "photosystem II subunit QA" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/139 (30%), Positives = 81/139 (58%)

Query:    46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
             G+ A T ++  AR+  F   + + F  + + P +   +A+      A+ +++VK L++ +
Sbjct:    91 GLPAGTDNSDQARD--FALALKDRFYLQPLPPTEAAARAKES----AKDIINVKPLIDRK 144

Query:   106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
             +W  VQ  LR+ ++ L+ D+ T+I++KP  E+  L+ L + LF+ +  LDYAA+ K  S+
Sbjct:   145 AWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQ 204

Query:   166 VHQCYENVVVALDSILSRL 184
               + Y   V AL+ +L++L
Sbjct:   205 AEKYYAETVSALNEVLAKL 223

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2115703 PSBQ-2 "photosystem II subunit Q-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/139 (28%), Positives = 77/139 (55%)

Query:    46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
             G +  T ++  AR+  F   + + F  + ++P +   +A+      A+ +++VK+ ++ +
Sbjct:    97 GGLPGTDNSDQARD--FSLALKDRFYIQPLSPTEAAARAKDS----AKEIINVKSFIDKK 150

Query:   106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
             +W  VQ  LR  ++ L+ D+ T+I+ KP  E+  L+ L + LF  +  LDYAAR K    
Sbjct:   151 AWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPD 210

Query:   166 VHQCYENVVVALDSILSRL 184
               + Y   V +L+++L++L
Sbjct:   211 AEKYYSETVSSLNNVLAKL 229

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB|P83646 OsI_025465 "Oxygen-evolving enhancer protein 3, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/108 (32%), Positives = 59/108 (54%)

Query:    79 QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
             Q +  AE+  R    AQ ++++K L+E + W  V+  LR  ++ L+ D+ T+IN+KP  E
Sbjct:   109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168

Query:   137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
             +  L+ L   LF  +  LD+AA+ K      + Y     AL  +L++L
Sbjct:   169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

GO:0009536 "plastid" evidence=IC

TAIR|locus:2035775 PnsL2 "Photosynthetic NDH subcomplex L 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 33/138 (23%), Positives = 65/138 (47%)

Query:    47 VIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESES 106
             VI    S+ LA+E   +    +  + +   P  + E A + I+  A+ L  ++ +L+  S
Sbjct:    55 VIGGATSSALAQE---KWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMS 111

Query:   107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRV 166
             W  V   +R   A L QD+   +N  P + R    +  ++L   +++LD+  R   V   
Sbjct:   112 WRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYES 171

Query:   167 HQCYENVVVALDSILSRL 184
             +  YE  + ++D+++  L
Sbjct:   172 YLYYEKTLKSIDNVVEFL 189

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2096707 PnsL3 "Photosynthetic NDH subcomplex L 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 26/97 (26%), Positives = 53/97 (54%)

Query:    88 IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147
             ++ +A  LL ++ L+  ++ + V+K LR  S  L  D   LI+   + ++  L  L + L
Sbjct:   123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182

Query:   148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
             F+   KL+ AA+ K+++    CY++    L  +++R+
Sbjct:   183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 22  0.39    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.90u 0.10s 18.00t   Elapsed:  00:00:01
  Total cpu time:  17.90u 0.10s 18.00t   Elapsed:  00:00:01
  Start:  Fri May 10 06:00:34 2013   End:  Fri May 10 06:00:35 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002268 PSII-Q subunit (186 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
PLN02956	185	PLN02956, PLN02956, PSII-Q subunit	2e-81
pfam05757	203	pfam05757, PsbQ, Oxygen evolving enhancer protein	3e-18
PLN02729	220	PLN02729, PLN02729, PSII-Q subunit	2e-08
TIGR03042	142	TIGR03042, PS_II_psbQ_bact, photosystem II protein	9e-07
PLN02999	190	PLN02999, PLN02999, photosystem II oxygen-evolving	1e-05

>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit

 Score =  238 bits (610), Expect = 2e-81
 Identities = 103/185 (55%), Positives = 132/185 (71%), Gaps = 1/185 (0%)

Query: 1   MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAR-E 59
           MAL+  V   +  HL P F+C  +P F SKG        +ISRR G +A  A  +LA+ E
Sbjct: 1   MALRLAVQALSATHLSPAFICCLKPTFPSKGNTSRRPLRSISRRRGALAAVAGVLLAQLE 60

Query: 60  AIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSA 119
           A F   IA  F+ R+ AP++TVE+AESG+R HA++LL VKAL+ESESW E QKALR S++
Sbjct: 61  ASFNVAIAFGFDLRLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSAS 120

Query: 120 SLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDS 179
           +LKQD+Y +I  KP  +RPQLR+LYSDLFN VTKLDYAARDKD +RV + YEN+V +LD 
Sbjct: 121 NLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAARDKDETRVWEYYENIVASLDD 180

Query: 180 ILSRL 184
           I SR+
Sbjct: 181 IFSRI 185

Length = 185

>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ)

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 36/112 (32%), Positives = 63/112 (56%)

Query: 73  RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNK 132
           R      + E+A +  +  A+ +L +K  ++ ++W  V+  LR  +  L+ D+ TLI+ K
Sbjct: 91  RFYLQPLSPEEAAARAKESAKDILDLKEFIDKKAWPYVRNYLRLKAGYLRYDLNTLISAK 150

Query: 133 PATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           P  E+  L+ L + LF+ +  LD+AAR KDV    + YE    +LD +L++L
Sbjct: 151 PKEEKKSLKDLANKLFDNIENLDFAARTKDVYEAEKYYEKTKSSLDEVLAKL 202

This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae. Length = 203

>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 25/97 (25%), Positives = 51/97 (52%)

Query: 88  IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147
           ++ +A  LL ++ L+  ++ + V+K LR  S  +  D   LI+  P  ++  L  L + L
Sbjct: 123 VKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRL 182

Query: 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           F+   KL+ A++ K++S     Y++    L  ++ R+
Sbjct: 183 FDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRM 219

Length = 220

>gnl|CDD|132086 TIGR03042, PS_II_psbQ_bact, photosystem II protein PsbQ

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 19/103 (18%), Positives = 44/103 (42%)

Query: 79  QTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERP 138
             +++   GI      L  + +L+  E W   +  +      +++++  L  +    ++ 
Sbjct: 36  AQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQK 95

Query: 139 QLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSIL 181
           +   L  +L + + KLD AAR +D  +  + Y+      D+ L
Sbjct: 96  EALALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADFDAYL 138

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology [Energy metabolism, Photosynthesis]. Length = 142

>gnl|CDD|178577 PLN02999, PLN02999, photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 28/108 (25%), Positives = 53/108 (49%)

Query: 77  PDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
           P  + E A + I+  A+ L  ++ +L+  SW  V   +R   A L QD+   +N  P + 
Sbjct: 82  PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 141

Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           R    +  ++L   +++LDY  R   V   +  YE  + ++D+++  L
Sbjct: 142 RNDYVQAANELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVVELL 189

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PLN02956	185	PSII-Q subunit	100.0
PLN02999	190	photosystem II oxygen-evolving enhancer 3 protein	100.0
PLN02729	220	PSII-Q subunit	100.0
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	100.0
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	100.0

>PLN02956 PSII-Q subunit

Probab=100.00  E-value=1.5e-64  Score=419.67  Aligned_cols=184  Identities=56%  Similarity=0.867  Sum_probs=181.2

Q ss_pred             CCcccccccCCCCCCCcceeeecCccccccCCCcccccccchhhHHHHHHHHHHHhhh-hhhccccccccceeeeecCCC
Q 030036            1 MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAR-EAIFREDIANAFEFRMVAPDQ   79 (184)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~-~~~~~~~~a~~~~~rf~~ppl   79 (184)
                      |||++.+.+.|++|++|+||||.||+|.+++|++++...+++||+|++|+|+++++++ ++.++++.|++|||||++|+.
T Consensus         1 mal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~a~~f~~~~~~p~~   80 (185)
T PLN02956          1 MALRLAVQALSATHLSPAFICCLKPTFPSKGNTSRRPLRSISRRRGALAAVAGVLLAQLEASFNVAIAFGFDLRLTAPER   80 (185)
T ss_pred             CCcccccccccchhcCCcccccCCCCCCccccccCCCccchhhHHHHHHHHHHHHHhhhccccchhhccccceeecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999 567999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHHh
Q 030036           80 TVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAAR  159 (184)
Q Consensus        80 ~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AAr  159 (184)
                      +||||++|||++|++|++||+||++++|+|||||||||+|||||||++||+++|++||+++++|+++||++|++||+|||
T Consensus        81 speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AAR  160 (185)
T PLN02956         81 TVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAAR  160 (185)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          160 DKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       160 ~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      .||.++|++||++|+++||+||++|
T Consensus       161 ~kd~~~a~k~Y~~tva~lD~Vl~~i  185 (185)
T PLN02956        161 DKDETRVWEYYENIVASLDDIFSRI  185 (185)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999987

>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

Probab=100.00  E-value=6.5e-44  Score=295.93  Aligned_cols=112  Identities=25%  Similarity=0.404  Sum_probs=110.8

Q ss_pred             eeecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchH
Q 030036           73 RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVT  152 (184)
Q Consensus        73 rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le  152 (184)
                      |||+||++|+||++|||++|++|++||+|||+++|+||+||||++++||||||+++|+++|+++|+++++|+++|||+|+
T Consensus        78 rfy~p~lspeeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt  157 (190)
T PLN02999         78 KYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMS  157 (190)
T ss_pred             hccCCCCCHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          153 KLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       153 ~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      +||||||+||++++++||++||++||||++.+
T Consensus       158 ~LDyAAR~K~~~eae~yY~~Tv~slddVl~~l  189 (190)
T PLN02999        158 ELDYYVRTPKVYESYLYYEKTLKSIDNVVELL  189 (190)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999864

>PLN02729 PSII-Q subunit

Probab=100.00  E-value=1.4e-43  Score=299.43  Aligned_cols=123  Identities=22%  Similarity=0.354  Sum_probs=120.2

Q ss_pred             hccc-----ccccccee--eeecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCC
Q 030036           61 IFRE-----DIANAFEF--RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKP  133 (184)
Q Consensus        61 ~~~~-----~~a~~~~~--rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P  133 (184)
                      +.|+     ++||+| |  |||+||++|++|++|||++|++|++||+|||+++|+||++|||++++||||||+++|+++|
T Consensus        90 t~n~~~~e~~gtRsf-LKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq~~LRLKAsyL~yDL~tvIsskP  168 (220)
T PLN02729         90 VDNKIVNEKTGTRSF-LKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAAP  168 (220)
T ss_pred             cccccccccchHHHH-HHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4577     999999 7  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          134 ATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       134 ~d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      +++|+++++||++||++|++||||||+||++++++||++|+++|||||++|
T Consensus       169 ~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeVl~k~  219 (220)
T PLN02729        169 VDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRM  219 (220)
T ss_pred             hhhhHHHHHHHHHHHhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999986

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=8.6e-44  Score=299.51  Aligned_cols=124  Identities=36%  Similarity=0.590  Sum_probs=102.0

Q ss_pred             hcccccccccee----eeecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCC
Q 030036           61 IFREDIANAFEF----RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE  136 (184)
Q Consensus        61 ~~~~~~a~~~~~----rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~  136 (184)
                      +.++++||||+|    |||+||++|+|+++||++++++|++|++||++++|+||++|||+++|||||||++||+++|+++
T Consensus        74 ~~~~~~aRd~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~  153 (202)
T PF05757_consen   74 TNNSDGARDFDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDE  153 (202)
T ss_dssp             --------------TT--EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHH
T ss_pred             ccccccccccccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHH
Confidence            456899999987    9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       137 Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      ||++++|+++||++||+||+|+|+||++++++||++|+++||+||++|
T Consensus       154 kk~l~~La~~lf~~ie~LD~Aar~K~~~~a~~~Y~~t~~~Ldevla~l  201 (202)
T PF05757_consen  154 KKALTDLANKLFDNIEELDYAARSKDVPEAEKYYADTVKALDEVLAKL  201 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999975

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=100.00  E-value=5.7e-33  Score=223.28  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHHHHHhHH-------HHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhh
Q 030036           77 PDQTVEQAESGIRYHAQSLL-------HVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFN  149 (184)
Q Consensus        77 ppl~~~eA~~RIke~A~~L~-------~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~  149 (184)
                      ||+|+.+.+++|+.++++|.       +|+.+|++++|++|||+||||+|+||+||++||+++|++|||++++|+++||+
T Consensus        27 p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~  106 (142)
T TIGR03042        27 PPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKD  106 (142)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHH
Confidence            99999999998888888864       46899999999999999999999999999999999999999999999999999


Q ss_pred             chHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          150 GVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       150 ~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      ++++||+||+.||.++|+++|++++++||+|++.|
T Consensus       107 ~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~~~  141 (142)
T TIGR03042       107 DLEKLDEAARLQDGPQAQKAYQKAAADFDAYLDLL  141 (142)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999865

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
1nze_A	149	Crystal Structure Of Psbq Polypeptide Of Photosyste		6e-10

>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii From Higher Plants Length = 149

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 70  FEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLI 129
           F  + + P +  ++A    +  A  +L+VK  ++ ++W  +Q  LR  ++ L+ D+ T+I
Sbjct: 38  FYLQPLPPTEAAQRA----KVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 93
Query: 130 NNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           + KP  E+  L++L S LF+ +  LD+AA+ K  +   + Y   V  ++ +L++L
Sbjct: 94  SAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	2e-32
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	9e-23
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	4e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Length = 149

 Score =  112 bits (282), Expect = 2e-32
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 73  RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNK 132
           R         +A    +  A  +L+VK  ++ ++W  +Q  LR  ++ L+ D+ T+I+ K
Sbjct: 37  RFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAK 96

Query: 133 PATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           P  E+  L++L S LF+ +  LD+AA+ K  +   + Y   V  ++ +L++L
Sbjct: 97  PKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Length = 130

 Score = 87.5 bits (216), Expect = 9e-23
 Identities = 18/104 (17%), Positives = 38/104 (36%)

Query: 81  VEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQL 140
           ++     I  +A+    ++  +    W E +  +R     +  D+  L  N  A ++P  
Sbjct: 23  IQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTP 82

Query: 141 RKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
             L   L +   K+D  A    V+   + +        + L+ L
Sbjct: 83  TALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL 126

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Length = 133

 Score = 81.0 bits (199), Expect = 4e-20
 Identities = 20/106 (18%), Positives = 47/106 (44%)

Query: 79  QTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERP 138
           Q                  ++ L+  ++W + Q  +      L++D+  L ++    ++ 
Sbjct: 24  QLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQD 83

Query: 139 QLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           + + L  ++F  + +LD AA+D++ S+    Y+  +   DS L+ L
Sbjct: 84  KAKTLAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLNLL 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 21/170 (12%), Positives = 50/170 (29%), Gaps = 45/170 (26%)

Query: 1   MALKPLVSKCTLPHLYPTFM--CYQQPA-FRSKGMPQNVLQCNISRRIGVIAVTASTMLA 57
             L  ++    L  L P      + + + F     P +    +I     ++++    ++ 
Sbjct: 353 DKLTTIIESS-LNVLEPAEYRKMFDRLSVF-----PPSA---HIP--TILLSLIWFDVIK 401

Query: 58  REAIFREDIANAFE-FRMVAPDQTVEQAESGIRYHAQSL-----------LHVKALLESE 105
            +      + N    + +V         ES I   +  L           LH +++++  
Sbjct: 402 SDV---MVVVNKLHKYSLVEKQP----KESTISIPSIYLELKVKLENEYALH-RSIVDH- 452

Query: 106 SWSEVQKALRASSASLKQD---IYT-----LINNKPATERPQLRKLYSDL 147
               + K   +            Y+     L N +        R ++ D 
Sbjct: 453 --YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	100.0
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	99.96
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	99.95
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	95.5

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=100.00  E-value=9.7e-45  Score=291.93  Aligned_cols=125  Identities=26%  Similarity=0.441  Sum_probs=110.7

Q ss_pred             hhcccccccccee-----eeecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCC
Q 030036           60 AIFREDIANAFEF-----RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPA  134 (184)
Q Consensus        60 ~~~~~~~a~~~~~-----rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~  134 (184)
                      ++.|+||||||+|     |||+||++|+||++||++++++|++|++||++++|+|||||||||+|+||+||++||+++|+
T Consensus        19 g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~Lr~Dl~~li~slp~   98 (149)
T 1vyk_A           19 GTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPK   98 (149)
T ss_dssp             ---------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHHHHHHHHHHHhCCH
Confidence            5699999999998     89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          135 TERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       135 d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      ++|+++++||++||++|++||+|||.||.++|++||++|+++||+||++|
T Consensus        99 ~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l  148 (149)
T 1vyk_A           99 DEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL  148 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999975

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=99.96  E-value=5.7e-29  Score=196.53  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=102.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhHH-------HHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHh
Q 030036           76 APDQTVEQAESGIRYHAQSLL-------HVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLF  148 (184)
Q Consensus        76 ~ppl~~~eA~~RIke~A~~L~-------~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF  148 (184)
                      .||+|+.+.+++|+.++++|.       +++.+|++++|++||||||||+|+||+||++|+++|++.+||++++++++||
T Consensus        11 ~pptysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~   90 (130)
T 3zsu_A           11 PPPTYSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALT   90 (130)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHH
Confidence            499999999999888888775       4588999999999999999999999999999999998889999999999999


Q ss_pred             hchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          149 NGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       149 ~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      ++|++||+||+.+|...|++.|++++++||.|++.|
T Consensus        91 ~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~li  126 (130)
T 3zsu_A           91 DDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL  126 (130)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999875

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=99.95  E-value=1.8e-28  Score=194.30  Aligned_cols=109  Identities=18%  Similarity=0.391  Sum_probs=100.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhHH-------H-HHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhH
Q 030036           76 APDQTVEQAESGIRYHAQSLL-------H-VKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL  147 (184)
Q Consensus        76 ~ppl~~~eA~~RIke~A~~L~-------~-lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~L  147 (184)
                      .||+|+.+.+++|+.++++|.       + ++.+|++++|++||||||||+|+||+||++|+++|++.+||++++++++|
T Consensus        13 ~pptysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l   92 (133)
T 3ls0_A           13 IPTTYSPEKIAQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEV   92 (133)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence            699999999888887777664       5 67899999999999999999999999999999999888999999999999


Q ss_pred             hhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       148 F~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      |++|++||+||+.+|.+.|++.|++++++||.|++.|
T Consensus        93 ~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~li  129 (133)
T 3ls0_A           93 FGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLNLL  129 (133)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999876

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=95.50  E-value=0.01  Score=53.35  Aligned_cols=104  Identities=14%  Similarity=0.228  Sum_probs=85.7

Q ss_pred             eeeecCCCCHHHHHHHHHHHHHhHHHHHHhhhh---cChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHh
Q 030036           72 FRMVAPDQTVEQAESGIRYHAQSLLHVKALLES---ESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLF  148 (184)
Q Consensus        72 ~rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdk---ksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF  148 (184)
                      ||..+|=-.+  .+..|+   ..|.++-+++.-   |.|.-+.+.++..+.-|..+=+.|+.+.|+++|+++.++.++|=
T Consensus        39 lr~alp~~~~--~~~~~q---~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~  113 (369)
T 3rfy_A           39 LRYALPIDNK--AIREVQ---KPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLE  113 (369)
T ss_dssp             HHHHSCCCCH--HHHHHH---HHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHH
T ss_pred             HhhhcCCCCh--hHHHHH---HHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHH
Confidence            3666665443  233444   445555566655   89999999999999999999999999999999999999999999


Q ss_pred             hchHhHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 030036          149 NGVTKLDYAARDKDVSRVHQCYENVVVALDSI  180 (184)
Q Consensus       149 ~~le~LD~AAr~Kn~~~A~~~Y~~tv~~Ldev  180 (184)
                      ..|++|..++..+|........++++..+.++
T Consensus       114 ~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~l  145 (369)
T 3rfy_A          114 AGMQDMLKIVEDRKRDAVAPKQKEILKYVGGI  145 (369)
T ss_dssp             HHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1nzea_	112	a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,	4e-30

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  104 bits (261), Expect = 4e-30
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 77  PDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
                 +A    +  A  +L+VK  ++ ++W  +Q  LR  ++ L+ D+ T+I+ KP  E
Sbjct: 4   QPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDE 63

Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
           +  L++L S LF+ +  LD+AA+ K  +   + Y   V  ++ +L++L
Sbjct: 64  KKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	100.0

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.4e-41  Score=259.39  Aligned_cols=111  Identities=27%  Similarity=0.487  Sum_probs=110.0

Q ss_pred             eecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHh
Q 030036           74 MVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTK  153 (184)
Q Consensus        74 f~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~  153 (184)
                      ||+||++|+||+.||++++++|.+|+++|++++|+||+||||||+|+||+||++||+++|+++||++++|+++||++|++
T Consensus         1 f~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~   80 (112)
T d1nzea_           1 FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN   80 (112)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036          154 LDYAARDKDVSRVHQCYENVVVALDSILSRL  184 (184)
Q Consensus       154 LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i  184 (184)
                      ||+|||.||.++|+++|++|+++||+||++|
T Consensus        81 LD~Aar~kd~~~a~~~Y~~t~~~ld~~la~l  111 (112)
T d1nzea_          81 LDHAAKIKSPTEAEKYYGQTVSNINEVLAKL  111 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999986