Citrus Sinensis ID: 030058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHHcccccccccEEcccEEc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccHHcccccccHHHHcccccEEEEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHEccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHccccccHHHcccccEEEEccccccccHHHHHHHHHHHcccccccccEcccEEEc
Coil and Loop (DISEMBL)
marfrnskkkgFVKSFvkkkqptvdhitgdkipksfvfsrgklpgplrQLEMDLRKLMLPHTALNLKEKKRNNLKDFlnvagpmgvTHFLMLSktesapylrvartpqgptltfkIHEYSLAVDVaqsqlrprcpqdlfktsplivlsgfgtgdqhLKLTTIMFQnifpaidintvsdqtiii
Flexible Loop (DISEMBL)
marfrnskkkgfvksfvkkkqptvdhitgdkipksfvfsrgklpgpLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQnifpaidintvsdqtiii
Low Complexity Region (SEG)
MARFRNskkkgfvksfvkkkQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAlnlkekkrnnlkDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Disordered region (IsUnstruct)
*************************HITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQ****
Disordered Region (DISOPRED)
**********************************SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVA*************KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Disordered Region (DISEMBL)
************VKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Disordered Region (DISPRO)
*****************************DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTIII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9ASU7	345	Peter Pan-like protein OS	yes	no	0.961	0.510	0.774	2e-75
Q91YU8	470	Suppressor of SWI4 1 homo	yes	no	0.814	0.317	0.496	5e-36
Q9NQ55	473	Suppressor of SWI4 1 homo	no	no	0.814	0.315	0.496	2e-35
Q5REM3	473	Suppressor of SWI4 1 homo	yes	no	0.814	0.315	0.489	2e-34
O14206	389	Brix domain-containing pr	yes	no	0.890	0.419	0.441	2e-30
Q54N44	426	Peter Pan-like protein OS	yes	no	0.792	0.340	0.413	1e-29
Q9VDE5	460	Protein Peter pan OS=Dros	yes	no	0.814	0.323	0.389	3e-26
P38789	453	Ribosome biogenesis prote	yes	no	0.770	0.311	0.429	6e-26
Q12153	453	Ribosome biogenesis prote	no	no	0.770	0.311	0.429	9e-26

>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 154/177 (87%), Gaps = 1/177 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTV 177

May play a role in cell growth, differentiation and cell cycle progression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2

 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 107/149 (71%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG+    +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
              H+KL   MFQN+FP+I+++TV+  TI
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTI 177

May have a role in cell growth.

Mus musculus (taxid: 10090)

>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 103/149 (69%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
              H+KL   MFQN+FP+I+++ V+  TI
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177

May have a role in cell growth.

Homo sapiens (taxid: 9606)

>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 102/149 (68%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
              H+KL   MFQN+FP+I+++ V+  TI
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177

May have a role in cell growth.

Pongo abelii (taxid: 9601)

>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 100/170 (58%), Gaps = 7/170 (4%)

Query: 11  GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
           G  K  VKK+     D I    IPKS V   G  ++   L  L  DLR +M PHTA+ LK
Sbjct: 3   GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62

Query: 68  EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
           E+K N +KD+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV +
Sbjct: 63  ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122

Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDI 173
            Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISV 172

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 93/145 (64%)

Query: 32  IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
           I KS V+ RG     +++L  + R++M P+TA  L+E   N  KDF+N+A   GV+H + 
Sbjct: 45  ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104

Query: 92  LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
            S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF 
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164

Query: 152 TGDQHLKLTTIMFQNIFPAIDINTV 176
            G  HL++   M Q++FP+I++ T+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTL 189

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 92/149 (61%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFV  RG     +  L +D R++M P TA NL+EK+ N +KDF++++    V+H  + 
Sbjct: 28  PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct: 88  NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
             +HLKL    FQN+FP+I++ TV+  TI
Sbjct: 148 DGKHLKLMATTFQNMFPSINLATVNIGTI 176

Required for initiation of larval growth and normal mitotic growth but is not absolutely required for general biosynthesis or DNA replication. Required for progression of normal oogenesis and maturation of some imaginal tissues into adult structures.

Drosophila melanogaster (taxid: 7227)

>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 15/156 (9%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGF------GTGDQHLKLTTI---MFQNIFPAID 172
           VL+GF      G  DQ + +  +   MFQNIFP ++
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLN 177

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1

 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 15/156 (9%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGFGTG------DQHLKLTTI---MFQNIFPAID 172
           VL+GF T       DQ + +  +   MFQNIFP ++
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLN 177

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
225437370	330	PREDICTED: peter Pan-like protein [Vitis	0.994	0.551	0.833	6e-86
449469080	344	PREDICTED: peter Pan-like protein-like [	0.961	0.511	0.857	2e-84
224128486	327	predicted protein [Populus trichocarpa]	0.989	0.553	0.826	6e-82
224068336	297	predicted protein [Populus trichocarpa]	0.939	0.579	0.845	4e-81
255564174	341	Protein Peter pan, putative [Ricinus com	0.994	0.533	0.795	8e-79
297793739	304	brix domain-containing protein [Arabidop	0.961	0.578	0.785	1e-74
30697573	346	Peter Pan-like protein [Arabidopsis thal	0.961	0.508	0.774	7e-74
30697571	345	Peter Pan-like protein [Arabidopsis thal	0.961	0.510	0.774	7e-74
356544390	348	PREDICTED: peter Pan-like protein-like [	0.923	0.485	0.742	4e-68
363814435	336	uncharacterized protein LOC100785073 [Gl	0.923	0.502	0.737	5e-68

>gi|225437370|ref|XP_002269158.1| PREDICTED: peter Pan-like protein [Vitis vinifera] gi|297743890|emb|CBI36860.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 155/186 (83%), Positives = 173/186 (93%), Gaps = 4/186 (2%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MARFRN+KKKGFVK  V KKQP VDH+TG+KIP S VFSRGKLPG L+QL+MDLRKLMLP
Sbjct: 1   MARFRNNKKKGFVKP-VGKKQPGVDHVTGEKIPHSIVFSRGKLPGSLKQLQMDLRKLMLP 59

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TA+NLKEK+RNNLKDFLN+AGP+GVTHFLMLSKTE+APYL+VARTPQGPTLTFKIHEYS
Sbjct: 60  YTAVNLKEKRRNNLKDFLNIAGPLGVTHFLMLSKTETAPYLKVARTPQGPTLTFKIHEYS 119

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV---S 177
           LAVDVAQSQLRPRCPQDLFK SPLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTV   S
Sbjct: 120 LAVDVAQSQLRPRCPQDLFKNSPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSS 179

Query: 178 DQTIII 183
            Q I++
Sbjct: 180 CQRIVL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469080|ref|XP_004152249.1| PREDICTED: peter Pan-like protein-like [Cucumis sativus]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 162/176 (92%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR  N KK+ FVK    KKQ  VDH+TG+KIPKSFVFSRGKLPGPL+QL+MDLRKLMLP
Sbjct: 1   MARIGNKKKQRFVKPIKVKKQSEVDHVTGEKIPKSFVFSRGKLPGPLKQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRNNLKD+LNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNNLKDYLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIQEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           LAV++AQSQLRPRCP+DLFK  PLIVLSGFGTGDQHLKL TIMFQNIFPAIDINTV
Sbjct: 121 LAVEIAQSQLRPRCPKDLFKNPPLIVLSGFGTGDQHLKLATIMFQNIFPAIDINTV 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128486|ref|XP_002320344.1| predicted protein [Populus trichocarpa] gi|222861117|gb|EEE98659.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 164/184 (89%), Gaps = 3/184 (1%)

Query: 3   RFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHT 62
            F    KK FVK   KKKQ  VDHITGDKIPKSFVF+RGKLPGPLRQL+M+LRKLMLP T
Sbjct: 23  EFIQKNKKMFVKPTSKKKQADVDHITGDKIPKSFVFARGKLPGPLRQLQMNLRKLMLPFT 82

Query: 63  ALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLA 122
           AL LKEKKRN+LKDFLNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKIHEYSLA
Sbjct: 83  ALKLKEKKRNSLKDFLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIHEYSLA 142

Query: 123 VDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV---SDQ 179
           VDVAQSQL PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTV   S Q
Sbjct: 143 VDVAQSQLHPRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSSCQ 202

Query: 180 TIII 183
            I++
Sbjct: 203 RIVL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068336|ref|XP_002302711.1| predicted protein [Populus trichocarpa] gi|222844437|gb|EEE81984.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/175 (84%), Positives = 160/175 (91%), Gaps = 3/175 (1%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
           FVK  VKKKQ  VDHITGDKIPKSFVF+RGKLPG LRQL+MDLRKLMLP+TAL LKEKKR
Sbjct: 2   FVKPIVKKKQANVDHITGDKIPKSFVFARGKLPGSLRQLQMDLRKLMLPYTALKLKEKKR 61

Query: 72  NNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLR 131
           NNLKDFLNVAGPMGV+HFL+LSKTE+APYLRVARTPQGPTLTFKIHEYSLA DVAQSQL 
Sbjct: 62  NNLKDFLNVAGPMGVSHFLILSKTETAPYLRVARTPQGPTLTFKIHEYSLAADVAQSQLH 121

Query: 132 PRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV---SDQTIII 183
           PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQ IFPAIDINTV   S Q I++
Sbjct: 122 PRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQKIFPAIDINTVKLSSCQRIVL 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564174|ref|XP_002523084.1| Protein Peter pan, putative [Ricinus communis] gi|223537646|gb|EEF39269.1| Protein Peter pan, putative [Ricinus communis]

 Score =  298 bits (762), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 148/186 (79%), Positives = 163/186 (87%), Gaps = 4/186 (2%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR ++ K+K   K  VKK+   VDHITGDKIPKSFVF+RGKLPGPLRQL+MDLRKLMLP
Sbjct: 1   MARVQSKKRKFAAKPIVKKEHGNVDHITGDKIPKSFVFARGKLPGPLRQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRN L+DFLNVAGPMGVTHFLMLSKT +APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNTLRDFLNVAGPMGVTHFLMLSKTATAPYLRVARTPQGPTLTFKILEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV---S 177
            A+DVAQSQLRPRCPQDLFK  PLIVLSGFG+ +QHLKLT IMFQNIFPAID+NTV   S
Sbjct: 121 TALDVAQSQLRPRCPQDLFKNPPLIVLSGFGS-EQHLKLTAIMFQNIFPAIDVNTVKLSS 179

Query: 178 DQTIII 183
            Q I++
Sbjct: 180 CQRIVL 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793739|ref|XP_002864754.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310589|gb|EFH41013.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 156/177 (88%), Gaps = 1/177 (0%)

Query: 1   MARFRNSKK-KGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK +  VK   KK Q  V H+TGDKIPKSFVFSR KLPGP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIVKPIPKKNQEDVSHVTGDKIPKSFVFSRMKLPGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTV 177

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697573|ref|NP_568939.2| Peter Pan-like protein [Arabidopsis thaliana] gi|42573760|ref|NP_974976.1| Peter Pan-like protein [Arabidopsis thaliana] gi|10176870|dbj|BAB10077.1| unnamed protein product [Arabidopsis thaliana] gi|332010132|gb|AED97515.1| Peter Pan-like protein [Arabidopsis thaliana] gi|332010133|gb|AED97516.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  281 bits (720), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 154/177 (87%), Gaps = 1/177 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTV 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697571|ref|NP_851242.1| Peter Pan-like protein [Arabidopsis thaliana] gi|24212091|sp|Q9ASU7.1|PPAN_ARATH RecName: Full=Peter Pan-like protein gi|13605686|gb|AAK32836.1|AF361824_1 AT5g61770/mac9_70 [Arabidopsis thaliana] gi|15810077|gb|AAL06964.1| At1g06730/F4H5_22 [Arabidopsis thaliana] gi|17979000|gb|AAL47460.1| AT5g61770/mac9_70 [Arabidopsis thaliana] gi|332010131|gb|AED97514.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 154/177 (87%), Gaps = 1/177 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTV 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544390|ref|XP_003540635.1| PREDICTED: peter Pan-like protein-like [Glycine max]

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 148/175 (84%), Gaps = 6/175 (3%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  V KK      QP+VD ITG KIPKSFVFSRGKLP PL+QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVVIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++ YLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSSYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           A D+A+SQL PRCP+DLFK S LIVLSGF +GD  L+LTT MFQNIFP ID+ TV
Sbjct: 124 AADIARSQLHPRCPKDLFKNSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTV 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814435|ref|NP_001242597.1| uncharacterized protein LOC100785073 [Glycine max] gi|255644918|gb|ACU22959.1| unknown [Glycine max]

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 149/175 (85%), Gaps = 6/175 (3%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  + KK      QP+VD ITG KIPKSFVFSRGKLP P +QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVIIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPPKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++PYLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSPYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTV 176
           A D+A+SQL PRCP+DLFK+S LIVLSGF +GD  L+LTT MFQNIFP ID+ TV
Sbjct: 124 AADIARSQLHPRCPKDLFKSSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTV 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2159213	346	PPAN "PETER PAN-like protein"	0.983	0.520	0.685	1.3e-59
MGI|MGI:2178445	470	Ppan "peter pan homolog (Droso	0.814	0.317	0.463	4.2e-31
UNIPROTKB|E2RGE3	559	PPAN "Uncharacterized protein"	0.814	0.266	0.469	2.6e-30
UNIPROTKB|Q9NQ55	473	PPAN "Suppressor of SWI4 1 hom	0.814	0.315	0.463	4.9e-30
POMBASE|SPAC1B9.03c	389	SPAC1B9.03c "RNA-binding prote	0.814	0.383	0.412	2e-24
UNIPROTKB|A8MV53	420	PPAN "HCG2033702, isoform CRA_	0.677	0.295	0.459	2.2e-23
WB|WBGene00003062	573	lpd-6 [Caenorhabditis elegans	0.786	0.251	0.4	4.1e-23
UNIPROTKB|G4NEI7	474	MGG_00087 "Ribosome biogenesis	0.814	0.314	0.391	2.7e-21
FB|FBgn0010770	460	ppan "peter pan" [Drosophila m	0.814	0.323	0.348	1.1e-20
ASPGD|ASPL0000017584	442	AN4232 [Emericella nidulans (t	0.775	0.321	0.389	5.7e-20

TAIR|locus:2159213 PPAN "PETER PAN-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 124/181 (68%), Positives = 137/181 (75%)

Query:     1 MARFRNXXXXXXXXX-XXXXXQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
             M RF+N               Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct:     1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query:    60 PHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
             P+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct:    61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query:   120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQ 179
             SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTV   
Sbjct:   121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query:   180 T 180
             T
Sbjct:   181 T 181

GO:0005634 "nucleus" evidence=ISM

MGI|MGI:2178445 Ppan "peter pan homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 69/149 (46%), Positives = 98/149 (65%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
                H+KL   MFQN+FP+I+++TV+  TI
Sbjct:   149 QGMHIKLMATMFQNLFPSINVHTVNLNTI 177

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

UNIPROTKB|E2RGE3 PPAN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 339 (124.4 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 70/149 (46%), Positives = 96/149 (64%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +DLR++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFARGRAGRGVRQLSLDLRRVMEPLTATRLQIRKKNTLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF+I++Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNIYFKLMRLPGGPTLTFRINKYTLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
                H+KL   MFQN+FP+I+++ V+  TI
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177

GO:0016021 "integral to membrane" evidence=IEA

GO:0045028 "G-protein coupled purinergic nucleotide receptor activity" evidence=IEA

UNIPROTKB|Q9NQ55 PPAN "Suppressor of SWI4 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 69/149 (46%), Positives = 94/149 (63%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
                H+KL   MFQN+FP+I+++ V+  TI
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTI 177

GO:0005634 "nucleus" evidence=IDA

GO:0008380 "RNA splicing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC1B9.03c SPAC1B9.03c "RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 64/155 (41%), Positives = 85/155 (54%)

Query:    25 DHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAG 82
             D I    IPKS V   G  ++   L  L  DLR +M PHTA            D+L +AG
Sbjct:    18 DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAG 77

Query:    83 PMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTS 142
             P+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV + Q  P+ P   F T 
Sbjct:    78 PLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTP 137

Query:   143 PLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDI 173
             PL+V++ F         H  L T  FQN+FP I +
Sbjct:   138 PLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISV 172

GO:0000027 "ribosomal large subunit assembly" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0019843 "rRNA binding" evidence=ISO

UNIPROTKB|A8MV53 PPAN "HCG2033702, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 57/124 (45%), Positives = 76/124 (61%)

Query:    58 MLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIH 117
             M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ 
Sbjct:     1 MEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVK 60

Query:   118 EYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVS 177
             +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V+
Sbjct:    61 KYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVN 120

Query:   178 DQTI 181
               TI
Sbjct:   121 LNTI 124

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

WB|WBGene00003062 lpd-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 274 (101.5 bits), Expect = 4.1e-23, P = 4.1e-23
 Identities = 58/145 (40%), Positives = 87/145 (60%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P   V  RG +   ++ LE DLR L+ P+TA            DF+     +GVT+ ++L
Sbjct:    56 PHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMMVL 115

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             + ++++  LR+ R  QGPTL+FK+ +YSLA  V   Q RP     LFK+SPL+V++GFG 
Sbjct:   116 TSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNGFGD 175

Query:   153 GDQ-HLKLTTIMFQNIFPAIDINTV 176
             G Q HL L     QN+FP+I+++T+
Sbjct:   176 GTQKHLSLVQTFIQNMFPSINVDTI 200

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|G4NEI7 MGG_00087 "Ribosome biogenesis protein SSF1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 255 (94.8 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 63/161 (39%), Positives = 93/161 (57%)

Query:    33 PKSFVF--SRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFL 90
             PKS V     G++   + QL  D+R++M P TA            D+L + GP+GVTH L
Sbjct:    34 PKSMVIRIGAGEVGSSVSQLATDVRRVMEPGTASRLKERRANKLRDYLVMCGPLGVTHLL 93

Query:    91 MLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG 149
             + S++ES    LRVA TP+GPTL F++ +YSL  DV +SQ RP+     F TSPL+V++ 
Sbjct:    94 LFSRSESGNVNLRVALTPRGPTLHFRVEKYSLTKDVQKSQRRPKGQGKEFVTSPLLVMNN 153

Query:   150 FGTGD--------QHLK-LTTIMFQNIFPAIDINTVSDQTI 181
             F +          +HL+ LTT +FQ++F  I+    S ++I
Sbjct:   154 FSSSSADAPSKTPKHLESLTTTVFQSLFAPINPQKTSLKSI 194

GO:0000027 "ribosomal large subunit assembly" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

FB|FBgn0010770 ppan "peter pan" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + 
Sbjct:    28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct:    88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVSDQTI 181
               +HLKL    FQN+FP+I++ TV+  TI
Sbjct:   148 DGKHLKLMATTFQNMFPSINLATVNIGTI 176

GO:0007444 "imaginal disc development" evidence=IMP

GO:0002164 "larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

ASPGD|ASPL0000017584 AN4232 [Emericella nidulans (taxid:162425)]

 Score = 242 (90.2 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 60/154 (38%), Positives = 87/154 (56%)

Query:    31 KIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             K PKS V   G  ++   + QL  D+R +M P TA            D+  +AGP+GVTH
Sbjct:    29 KTPKSMVIRIGGSRVGSSVSQLVKDVRLMMEPDTAVRLKERKSNRLRDYAVMAGPLGVTH 88

Query:    89 FLMLSKTESA-PYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVL 147
             FL+ SK+ +    +R+A TP+GPTL FK+  YSL  DV ++  RPR      KT PL+V+
Sbjct:    89 FLLFSKSSTGNTNMRLALTPRGPTLNFKVESYSLCRDVEKALKRPRGGGQDHKTPPLLVM 148

Query:   148 SGFGT--GDQHLK-------LTTIMFQNIFPAID 172
             + F +   D++ K       LTT +FQ++FP I+
Sbjct:   149 NNFNSPNADENSKVPKRLESLTTTVFQSLFPPIN 182

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASU7	PPAN_ARATH	No assigned EC number	0.7740	0.9617	0.5101	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•	•		•		0.850
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•	•		•		0.825
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•				0.809
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•				0.799
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•				0.785
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.746
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•					0.742
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.741
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•					0.734
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.725

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam04427	176	pfam04427, Brix, Brix domain	9e-26
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	2e-22

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score = 96.9 bits (242), Expect = 9e-26
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 37  VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96
           + +  K    LRQL  DLR L     A  L   K+  LKD L  AG  G T  L+  + +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF--PNAKKLNRGKKK-LKDLLEFAGEKGDTSLLVFGEHK 57

Query: 97  SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQH 156
               L + R P GPTL F+I    L  D+       +       + PL+V +GF      
Sbjct: 58  KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKG------SRPLLVFNGFFFTRLG 111

Query: 157 LKLTTIMFQNIFPAIDINTVSDQTI 181
           LKL   + Q++FP  +++ +  +  
Sbjct: 112 LKLIKELLQDLFPGPNVHKIPLKGG 136

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score = 88.2 bits (219), Expect = 2e-22
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 36  FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKT 95
            + +  K     RQL  DLR+L  P T +N  + K N L +F +  G       ++   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKG--NTDLLVVFESS 58

Query: 96  ESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTG 153
                  L + R P GPTL FKI   SL  ++   +        L  + PL++ + F T 
Sbjct: 59  SKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTE 114

Query: 154 DQHLKLTTIMFQNIFPAIDINTVSDQTI 181
                L   +FQ++FP    +  S   +
Sbjct: 115 LGK--LIKELFQDLFPGPPEHKKSLPGL 140

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	99.96
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	99.96
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	99.95
KOG2971	299	consensus RNA-binding protein required for biogene	99.94
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	99.92
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	99.9
PRK03972	208	ribosomal biogenesis protein; Validated	99.87
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.78
PRK00933	165	ribosomal biogenesis protein; Validated	97.57
KOG3031	307	consensus Protein required for biogenesis of the r	92.88
PRK03972	208	ribosomal biogenesis protein; Validated	85.85

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.8e-52  Score=362.32  Aligned_cols=168  Identities=55%  Similarity=0.840  Sum_probs=158.8

Q ss_pred             hhhhccCCCCCCCCCCCCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEe
Q 030058           15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSK   94 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~   94 (183)
                      +++.++...+.+++..+.|+|+|+++|-.++++++|..|||++|+||||++|+|++.|+||||+.+|+++|||||++|+.
T Consensus         8 K~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lsk   87 (405)
T KOG2963|consen    8 KRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSK   87 (405)
T ss_pred             hhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEec
Confidence            34455555566777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEeCCCCCeEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCC-chhHHHHHHHHhcCCCCCC
Q 030058           95 TESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDI  173 (183)
Q Consensus        95 ~~~~~~L~i~~lP~GPTl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~-~h~~lv~~mfq~lFP~i~~  173 (183)
                      ++..++|+|+|+|+|||+||+|..|+|.+||.++++||+++...|+|+||||||||++.. .|++|+++|||||||+|||
T Consensus        88 t~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv  167 (405)
T KOG2963|consen   88 TETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINV  167 (405)
T ss_pred             ccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCc
Confidence            999999999999999999999999999999999999999998889999999999999986 8999999999999999999


Q ss_pred             CccccCcee
Q 030058          174 NTVSDQTII  182 (183)
Q Consensus       174 ~~~~l~~~~  182 (183)
                      ++|+|++|+
T Consensus       168 ~tvnlntik  176 (405)
T KOG2963|consen  168 ATVNLNTIK  176 (405)
T ss_pred             ceeecccee
Confidence            999999985

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=99.96  E-value=3.7e-30  Score=208.52  Aligned_cols=139  Identities=33%  Similarity=0.543  Sum_probs=77.5

Q ss_pred             EEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEEEE
Q 030058           37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK  115 (183)
Q Consensus        37 V~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~F~  115 (183)
                      |++++++++++++|++||+.+| |.++.+++..+.|.++|++++|..++|+|+++|+++++. .+|||+++|+|||++|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~-~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~   79 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLF-PPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS   79 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS--TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence            6899999999999999999999 667889997777799999999999999999999999984 89999999999999999


Q ss_pred             EeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCC-chhHHHHHHHHhcCCCCCCCccccCcee
Q 030058          116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVSDQTII  182 (183)
Q Consensus       116 V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~-~h~~lv~~mfq~lFP~i~~~~~~l~~~~  182 (183)
                      |++|.+++|+.++.+++      ..++|+||||||+++. +|++++++||++|||..+++++.+..++
T Consensus        80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~  141 (191)
T PF04427_consen   80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGID  141 (191)
T ss_dssp             EEEEE-HHHHT-------------S---EEEEE-----------------------------------
T ss_pred             EEeEEEhhHhcccccCC------CCCCeEEEEEecccccccccccccccccccccccccccccccccc
Confidence            99999999998764422      2467999999999875 7899999999999999999998877653

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=99.96  E-value=8e-29  Score=209.88  Aligned_cols=132  Identities=20%  Similarity=0.370  Sum_probs=121.3

Q ss_pred             CCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCC
Q 030058           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG  109 (183)
Q Consensus        31 ~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~G  109 (183)
                      .+||++|++|+.+|+++.+|+++|+.|+ || |.+++ |+.+.+.+++++|...|+|++++++|+++. .+|.|+|||.|
T Consensus        81 ~dPKimvTTSR~PSsrL~~FaKelkLvf-PN-aqr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfG  157 (290)
T KOG2781|consen   81 EDPKIMVTTSRDPSSRLKMFAKELKLVF-PN-AQRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFG  157 (290)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHhheEec-cC-hhhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCC
Confidence            4799999999999999999999999997 99 67887 888999999999999999999999999998 79999999999


Q ss_pred             CeEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCCC
Q 030058          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDIN  174 (183)
Q Consensus       110 PTl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~~  174 (183)
                      ||++|.+.|+.+.+||.+.       |......|.||||||.+.+  |+++++++..|||....+
T Consensus       158 PTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~d  213 (290)
T KOG2781|consen  158 PTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKDD  213 (290)
T ss_pred             CceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcCC
Confidence            9999999999999999875       4444568999999999999  579999999999955444

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=99.95  E-value=8e-28  Score=205.71  Aligned_cols=129  Identities=19%  Similarity=0.343  Sum_probs=119.2

Q ss_pred             CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 030058           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP  110 (183)
Q Consensus        32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GP  110 (183)
                      .||+||+++..+......|+.+|+.++ ||+..  +.|+...+|.++++|..+++||+||++++++. .+|.|+|+|+||
T Consensus        96 spKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~--~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP  172 (302)
T KOG2780|consen   96 SPKVLITTSKNPKRTTYKFASELLDII-PNSTV--KKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP  172 (302)
T ss_pred             CccEEEEcCCCCcccHHHHHHHHHHhC-CCceE--EecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence            699999999999999999999999996 99755  44568999999999999999999999999877 899999999999


Q ss_pred             eEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCC
Q 030058          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAID  172 (183)
Q Consensus       111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~  172 (183)
                      |++|+++||++.+||++.       |+.+.|.|+||+|||+|++||  .|++|||+|||+-.
T Consensus       173 T~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG~--~v~r~f~sLfp~~p  225 (302)
T KOG2780|consen  173 TAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLGM--TVGRLFASLFPHDP  225 (302)
T ss_pred             ceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhhH--HHHHHHHHhCCCCc
Confidence            999999999999999876       677889999999999999954  99999999999743

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.2e-26  Score=195.78  Aligned_cols=130  Identities=22%  Similarity=0.366  Sum_probs=122.7

Q ss_pred             cEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 030058           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL  112 (183)
Q Consensus        34 k~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl  112 (183)
                      +++|+++++++.+.+|||+|+..+| ||+..+-+..++.++-.+.++|+..+|+.+++|+++++. +||||+..|+|||+
T Consensus        51 rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSv  129 (299)
T KOG2971|consen   51 RVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSV  129 (299)
T ss_pred             eEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCce
Confidence            6999999999999999999999998 999999888888899999999999999999999999876 89999999999999


Q ss_pred             EEEEeeeEehhhhhhhcCCCCCCCCCCC-CCcEEEcCCCCCCCchhHHHHHHHHhcCCCC
Q 030058          113 TFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSGFGTGDQHLKLTTIMFQNIFPAI  171 (183)
Q Consensus       113 ~F~V~n~~l~~DI~~~~k~~~~~g~~~~-~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i  171 (183)
                      .|.|+|+++|+|+.       ++|||++ ++|+|-||.-++..+|++++..+|++.|...
T Consensus       130 kFlv~n~hTM~Elk-------mtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP  182 (299)
T KOG2971|consen  130 KFLVHNVHTMAELK-------MTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIP  182 (299)
T ss_pred             EEehhhhhhHHHhC-------CccccccCCcceeecccccccchHHHHHHHHHHHHcCCC
Confidence            99999999999997       4599996 9999999999999999999999999999443

>smart00879 Brix Brix domain

Probab=99.92  E-value=2.7e-24  Score=171.49  Aligned_cols=138  Identities=28%  Similarity=0.410  Sum_probs=113.4

Q ss_pred             EEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCC-CCceEEEEEecC-CC-CceEEEeCCCCCeE
Q 030058           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKTE-SA-PYLRVARTPQGPTL  112 (183)
Q Consensus        36 lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~-g~Thllv~~~~~-~~-~~L~i~~lP~GPTl  112 (183)
                      ||++++++++++++|++||+.+|.|+++.   .|+++.+.++.+.|... +++++++++.+. +. .+|||+++|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~---~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKI---NRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEee---cccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            58999999999999999999999555433   35667778888887777 677777777653 33 79999999999999


Q ss_pred             EEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCCCccccCcee
Q 030058          113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVSDQTII  182 (183)
Q Consensus       113 ~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~~~~~l~~~~  182 (183)
                      +|.+.+|++.+|+......+    ....++|+||||||+++.+  +++++||+.|||..++.++++..++
T Consensus        78 ~f~i~~v~~~~~~~~~~~~~----~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~  141 (180)
T smart00879       78 DFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLR  141 (180)
T ss_pred             EEEEECcccHhhhhhhhcCC----CcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCC
Confidence            99999999999998754321    1245899999999999984  7999999999999999988776653

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.7e-23  Score=173.62  Aligned_cols=130  Identities=24%  Similarity=0.397  Sum_probs=122.1

Q ss_pred             CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 030058           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP  110 (183)
Q Consensus        32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GP  110 (183)
                      ..+++|+++++++.+.+||++||-.+| ||+...-|.+-+..+-++.++|..++|..+++|+.++.. +|||+++.|+||
T Consensus        30 kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp  108 (283)
T COG5154          30 KQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP  108 (283)
T ss_pred             cceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence            458999999999999999999999998 999888888888889999999999999999999999876 899999999999


Q ss_pred             eEEEEEeeeEehhhhhhhcCCCCCCCCCCC-CCcEEEcCCCCCCCchhHHHHHHHHhcCC
Q 030058          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSGFGTGDQHLKLTTIMFQNIFP  169 (183)
Q Consensus       111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~-~~PlLIlNnF~t~~~h~~lv~~mfq~lFP  169 (183)
                      |+.|+++|.++|+|+..       +||+++ ++|.|-||--+...+|++.+..++++.|.
T Consensus       109 tvkF~~~NlhTMdelNf-------tgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~  161 (283)
T COG5154         109 TVKFRMHNLHTMDELNF-------TGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFG  161 (283)
T ss_pred             eEEEEEeccchHhhcCC-------ccccccCCcceEeeccccccchHHHHHHHHHHHhcc
Confidence            99999999999999964       489996 99999999999999999999999999994

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.87  E-value=1.7e-21  Score=162.49  Aligned_cols=125  Identities=14%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             EEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCC---CC
Q 030058           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ---GP  110 (183)
Q Consensus        35 ~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~---GP  110 (183)
                      ++|++|+++|.++++|++||..++ ||+ .. ..|++++|+|+++.|...|+|++++++|+++. .+|.|+|||.   ||
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~-Pns-~~-i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP   78 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVF-PNS-LY-LTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY   78 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhC-CCC-EE-EecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence            689999999999999999999997 996 33 45889999999999999999999999999988 7999999985   55


Q ss_pred             eEEEEEeeeEehhhhh--hhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCC
Q 030058          111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA  170 (183)
Q Consensus       111 Tl~F~V~n~~l~~DI~--~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~  170 (183)
                      |++|+|+|+.+.+||.  +.       |....|.|++|.+||.++.++ ...+..+.+.+.-
T Consensus        79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~-~~~Ak~lA~eLgi  132 (208)
T PRK03972         79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDH-MAFAQVFAELTGG  132 (208)
T ss_pred             eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHH-HHHHHHHHHHhCC
Confidence            9999999999999993  33       445568999999999999875 3344445444443

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.78  E-value=2.1e-18  Score=142.58  Aligned_cols=129  Identities=19%  Similarity=0.306  Sum_probs=114.9

Q ss_pred             CcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeC-CCCC
Q 030058           33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQGP  110 (183)
Q Consensus        33 Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~l-P~GP  110 (183)
                      ||.+||||+++|.++++|++||..++ ||+.. ++ |++.++.++.+.|...|.+++++++|.++. ..|.+.++ |+||
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~~-~~-rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~   78 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVL-PNAYF-LR-RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL   78 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhC-CcceE-Ee-cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence            89999999999999999999999997 99754 34 578899999999999999999999999999 69999999 9999


Q ss_pred             eEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhc----CCCC
Q 030058          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAI  171 (183)
Q Consensus       111 Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~l----FP~i  171 (183)
                      ++.|.+.++++.+|+..+...      .-.+.|++|+|||.+.++| ..+.++|+.+    |++-
T Consensus        79 ~~~f~l~~v~l~re~~~~~~~------~~~~~~~~I~~~~~~~~g~-~~~~~~~~~~~~~~f~~~  136 (191)
T COG2136          79 TFSFKLSGVKLRREIPVLGPK------SRLHGPELIFNNFTTLLGF-LKVAEAFSELLLVKFVPN  136 (191)
T ss_pred             eEEEEEecceEEEeccccCCc------ccCCCCceeeecccccccc-hhhHHHHHhhcccccccC
Confidence            999999999999999876321      2347899999999999974 7899999999    7654

>PRK00933 ribosomal biogenesis protein; Validated

Probab=97.57  E-value=0.00056  Score=55.67  Aligned_cols=83  Identities=13%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             EEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEEE
Q 030058           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF  114 (183)
Q Consensus        36 lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~F  114 (183)
                      +|||+++++..++++++||-..+  |+  .+..|++.+++++.+.|..   .++++++|+++. ..|.|...-.-+.+.+
T Consensus         2 IITTSrkPs~~t~~fAkeLa~~l--n~--~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~   74 (165)
T PRK00933          2 IITTSRKPSQRTRSLVKDLARFL--NC--KYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY   74 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh--CC--EEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence            79999999999999999999997  54  4566899999999887654   399999999988 7999999877777777


Q ss_pred             EEeeeEehhhhh
Q 030058          115 KIHEYSLAVDVA  126 (183)
Q Consensus       115 ~V~n~~l~~DI~  126 (183)
                      .+. +.+..|..
T Consensus        75 ~~~-v~~~~~~~   85 (165)
T PRK00933         75 RLS-VKLQREIS   85 (165)
T ss_pred             EEE-eeeecccC
Confidence            663 45555553

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=92.88  E-value=0.2  Score=44.26  Aligned_cols=139  Identities=19%  Similarity=0.273  Sum_probs=101.6

Q ss_pred             cEEEEcCC-CCCccHHHHHHHHhHhcCCCcccccccccCCCHH------HHHHhhcCCCCceEEEEEecCCC-CceEEEe
Q 030058           34 KSFVFSRG-KLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLK------DFLNVAGPMGVTHFLMLSKTESA-PYLRVAR  105 (183)
Q Consensus        34 k~lV~~~g-~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lk------d~v~~a~~~g~Thllv~~~~~~~-~~L~i~~  105 (183)
                      +..++..| .++..+.+.|.|+-.+=-|.+ .++.  ++|++.      -+..+.....|+-+++-+.+.+- .+|.|.|
T Consensus        28 k~alf~~g~~~~~tl~~vm~dl~alKKp~~-i~~~--rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR  104 (307)
T KOG3031|consen   28 KDALFLPGMKTNKTLLDVMKDLYALKKPLE-IRYN--RKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGR  104 (307)
T ss_pred             hhhhccCchhhchHHHHHHHHHHHhccCce-eeec--cCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEE
Confidence            34455555 567788999999999988974 4444  445554      34566667777777666666655 7999998


Q ss_pred             CCCCCe---EEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCC-CCCchhHHHHHHHHhcCCCCCCCccccCce
Q 030058          106 TPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG-TGDQHLKLTTIMFQNIFPAIDINTVSDQTI  181 (183)
Q Consensus       106 lP~GPT---l~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~-t~~~h~~lv~~mfq~lFP~i~~~~~~l~~~  181 (183)
                      +=++=-   +-+.|.||....|...+.     .+.  .+.|.|+|+|+. ...+.++++.++|-..|---.++++.|..+
T Consensus       105 ~fd~~vlDMiElgI~~ykslsdF~~~k-----~~~--gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl  177 (307)
T KOG3031|consen  105 TFDYEVLDMIELGIENYKSLSDFKAAK-----ITE--GTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL  177 (307)
T ss_pred             ecCchhhHHHHHhhhhhhhhhhhhccC-----CCC--CCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence            765543   457889999999987652     112  367999999984 344558999999999999999999988765


Q ss_pred             e
Q 030058          182 I  182 (183)
Q Consensus       182 ~  182 (183)
                      +
T Consensus       178 ~  178 (307)
T KOG3031|consen  178 E  178 (307)
T ss_pred             c
Confidence            4

>PRK03972 ribosomal biogenesis protein; Validated

Probab=85.85  E-value=6.3  Score=33.38  Aligned_cols=78  Identities=13%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             CCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCCCceEEEe------
Q 030058           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVAR------  105 (183)
Q Consensus        32 ~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~~~L~i~~------  105 (183)
                      -| -+|+++.+++....+..+.+-..+    ...+-+|++.++.++.   ...+..+++|+..+-.+..+.+-+      
T Consensus       105 ~p-~iItts~kt~~g~~~~Ak~lA~eL----gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~~~~~~~~~~~~~~  176 (208)
T PRK03972        105 MP-LVITTAKRVGLDHMAFAQVFAELT----GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRGMAVNFYRLDVTKE  176 (208)
T ss_pred             cc-EEEEcCCCCCHHHHHHHHHHHHHh----CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCceEEEEEEeccccc
Confidence            45 378888888887888888887776    2334568888888665   445678899998888776666666      


Q ss_pred             CCCCCeEEEEEe
Q 030058          106 TPQGPTLTFKIH  117 (183)
Q Consensus       106 lP~GPTl~F~V~  117 (183)
                      -|-||.+..++-
T Consensus       177 ~~~~~~~~~~~~  188 (208)
T PRK03972        177 RPVGPLIFVKIW  188 (208)
T ss_pred             cccCCcEEEEEE
Confidence            488999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.95
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.44

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.95  E-value=5.7e-28  Score=201.69  Aligned_cols=130  Identities=13%  Similarity=0.126  Sum_probs=117.5

Q ss_pred             CCCcEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCC
Q 030058           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG  109 (183)
Q Consensus        31 ~~Pk~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~G  109 (183)
                      ..||++||||++++.++++|++||+.+| ||+ ..+ .|++++|+|+++.|..+|||++++|+++++. .+|||+|+|.|
T Consensus        32 ~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns-~~i-~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G  108 (217)
T 2cxh_A           32 GGYRILVTTSRRPSPRIRSFVKDLSATI-PGA-FRF-TRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP  108 (217)
T ss_dssp             -CCEEEEEESSSCCHHHHHHHHHHHTTS-TTE-EEC-CCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCC-EEe-ecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence            4899999999999999999999999998 986 344 4889999999999999999999999999987 89999999999


Q ss_pred             ---C-eEEEEEeeeEehhhhhhhcCCCCCCCCCC-CCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCC
Q 030058          110 ---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI  173 (183)
Q Consensus       110 ---P-Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~-~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~  173 (183)
                         | |++|+|+|+.+++||..+       |+++ .++|+|+ |||.+++  +.++++||++|||....
T Consensus       109 ~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~~--g~~i~~~f~~lFp~P~~  167 (217)
T 2cxh_A          109 ERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSGV--AVEFADAFVIAFHARLK  167 (217)
T ss_dssp             SCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSST--HHHHHHHHHHHHCCBSS
T ss_pred             CCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCch--HHHHHHHHHHHcCCCCC
Confidence               9 999999999999999865       5555 4899999 9999884  78999999999998443

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.44  E-value=2.4e-13  Score=107.98  Aligned_cols=84  Identities=13%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             cEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 030058           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL  112 (183)
Q Consensus        34 k~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl  112 (183)
                      |.+|||+++++.++.+|+++|..++  + +. +-.|++.+|+++++.|...    +++++++++. .+|.|+|+|.|||+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l--n-~~-~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~   72 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM--G-WR-YINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG   72 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH--T-CE-ECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--C-CE-EEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence            5799999999999999999999997  5 33 3458899999999988554    9999999988 79999999999999


Q ss_pred             EEEEeeeEehhhhh
Q 030058          113 TFKIHEYSLAVDVA  126 (183)
Q Consensus       113 ~F~V~n~~l~~DI~  126 (183)
                      +|++ |+.+.+|+.
T Consensus        73 ~f~~-nv~l~~~~~   85 (156)
T 1w94_A           73 YILF-NPSFEMKKP   85 (156)
T ss_dssp             EEEE-EEEECSSCC
T ss_pred             EEEE-ceEEcccCc
Confidence            9999 999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	1e-14

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 15/130 (11%)

Query: 47  LRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVART 106
           +R    DL   +          +   ++++    A   G    +++ +    P +     
Sbjct: 16  IRSFVKDLSATIPGAFRFT---RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYA 72

Query: 107 PQGP-----TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTT 161
            +GP      ++F +   SL+ +           +         + SG            
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAV---EFADAF 126

Query: 162 I-MFQNIFPA 170
           +  F      
Sbjct: 127 VIAFHARLKP 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.97
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.83

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=1.5e-32  Score=221.37  Aligned_cols=133  Identities=13%  Similarity=0.127  Sum_probs=120.2

Q ss_pred             cEEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCCCceEEEeCCCCC---
Q 030058           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGP---  110 (183)
Q Consensus        34 k~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~~~L~i~~lP~GP---  110 (183)
                      |+|||+|+++|+++++|++||+.+| ||+.  ...|++++|+|++++|..+||||+++|+|+++.++|+++|+|+||   
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~-Pns~--~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p~l~i~~lP~GP~~~   79 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATI-PGAF--RFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERP   79 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTS-TTEE--ECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC-CCCE--EeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCCcEEEEECCCCCCCc
Confidence            7999999999999999999999998 9963  466899999999999999999999999999988999999999999   


Q ss_pred             --eEEEEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCCC
Q 030058          111 --TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDIN  174 (183)
Q Consensus       111 --Tl~F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~~  174 (183)
                        |++|+|+|+.+.+|+....   ..+|..+.+.|+||||||.++++  +++++||+++||+...+
T Consensus        80 ~~t~~F~l~nv~l~~e~~~~~---~~~~~~t~~~p~lilnnf~t~Lg--~~~~~~f~~lf~~p~~~  140 (180)
T d2cxha1          80 DNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAVEFA--DAFVIAFHARLKPPEAA  140 (180)
T ss_dssp             EEEEEEEEEEEECHHHHTCCC---CCCCSCCEEEEEESSSSTHHHHH--HHHHHHHCCBSSCCSSS
T ss_pred             cceEEEEEEEEEEehhhcccc---CCCCCCccccchhHhcccchHHH--HHHHHHHHhhCCCchhc
Confidence              9999999999999997543   23466677999999999999994  59999999999985544

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=1.5e-21  Score=153.38  Aligned_cols=111  Identities=12%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             EEEEcCCCCCccHHHHHHHHhHhcCCCcccccccccCCCHHHHHHhhcCCCCceEEEEEecCCC-CceEEEeCCCCCeEE
Q 030058           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLT  113 (183)
Q Consensus        35 ~lV~~~g~~~~~~~~L~~DlR~vm~P~ta~~lk~r~kn~lkd~v~~a~~~g~Thllv~~~~~~~-~~L~i~~lP~GPTl~  113 (183)
                      +|||+|+++|.++++|++||..++ |++  .+ .|++..++|+++.|    +|++++++|+++. ..|.| |+|+|||++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~-P~~--~~-~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~   71 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIM-GWR--YI-NRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG   71 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHH-TCE--EC-CCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhC-CCe--EE-EcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence            489999999999999999999998 974  44 48899999999887    7999999999999 57776 999999999


Q ss_pred             EEEeeeEehhhhhhhcCCCCCCCCCCCCCcEEEcCCCCCCCchhHHHHHHHHhcCCCCCC
Q 030058          114 FKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI  173 (183)
Q Consensus       114 F~V~n~~l~~DI~~~~k~~~~~g~~~~~~PlLIlNnF~t~~~h~~lv~~mfq~lFP~i~~  173 (183)
                      |.+.|+.+.+|                 +|+||+|||.+++++  .++++|+++||.-..
T Consensus        72 f~l~~v~l~~e-----------------~p~li~~~f~t~lg~--~v~~~L~~lf~~~~~  112 (154)
T d1w94a1          72 YILFNPSFEMK-----------------KPELADKAVRVSSCP--PGSEGLCNLMGLEVD  112 (154)
T ss_dssp             EEEEEEEECSS-----------------CCCCSSCCCEESCCC--TTCHHHHHHHTCEEC
T ss_pred             EEEeeEEcccc-----------------CCcCcccccccccch--hHHHHHHHHcCCChh
Confidence            99999998765                 489999999999965  999999999996433