Citrus Sinensis ID: 030082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA
ccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEcccccccccccEEcccccccccccEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHcccEEccccEEEEEcccccccccccccccccccc
ccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEcHHHcHccccHHcccccccccccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHcccEcccccEEEEEcccccHHHHHHHHHHHHHcc
mkkkgvdefpfCVHLVSWEKENVSSEALEAARIACNKYMAKfagkdafhlrvrvhpfHVLRINKMLSCagadrlqtgmrgafgkpqgtcARVAIGQVLLSVRCKDSNSLHAQEALRRAkfkfpgrqkiivsrkwgftkfsrsdylrfksenrivpdgvnakllgchgplasrqpgraflhata
mkkkgvdefpfCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALrrakfkfpgrqkiivsrkwgftkfsrsdylrfksenrivpdGVNAKLLGCHgplasrqpgrAFLHATA
MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA
******DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGP***************
***KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKML*****************KPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH***
MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA
****GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHAT*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query183 2.2.26 [Sep-21-2011]
P93847219 60S ribosomal protein L10 N/A no 0.994 0.831 0.923 3e-96
Q9SPB3220 60S ribosomal protein L10 N/A no 0.989 0.822 0.906 5e-96
Q9M5M7220 60S ribosomal protein L10 N/A no 1.0 0.831 0.907 2e-94
Q08770221 60S ribosomal protein L10 yes no 1.0 0.828 0.863 3e-90
P45633220 60S ribosomal protein L10 N/A no 1.0 0.831 0.857 2e-89
Q93VT9220 60S ribosomal protein L10 yes no 0.989 0.822 0.861 4e-89
Q0DKF0219 60S ribosomal protein L10 yes no 0.994 0.831 0.862 4e-89
A2Y0T4219 60S ribosomal protein L10 N/A no 0.994 0.831 0.862 4e-89
Q93W22221 60S ribosomal protein L10 yes no 1.0 0.828 0.846 6e-89
O22431228 60S ribosomal protein L10 N/A no 0.972 0.780 0.859 1e-88
>sp|P93847|RL10_SOLME 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1 Back     alignment and function desciption
 Score =  350 bits (898), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/182 (92%), Positives = 175/182 (96%)

Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH 180
           KFPGRQKIIVSRKWGFTKFSR+DYL++KSENRIVPDGVNAKLLG HGPLA+RQPGRAFL 
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLS 217

Query: 181 AT 182
           ++
Sbjct: 218 SS 219

Solanum melongena (taxid: 4111)
>sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q9M5M7|RL10_EUPES 60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q08770|RL102_ARATH 60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2 Back     alignment and function description
>sp|P45633|RL10_MAIZE 60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q93VT9|RL101_ARATH 60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=1 SV=1 Back     alignment and function description
>sp|Q0DKF0|RL102_ORYSJ 60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1 Back     alignment and function description
>sp|A2Y0T4|RL102_ORYSI 60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2 Back     alignment and function description
>sp|Q93W22|RL103_ARATH 60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1 Back     alignment and function description
>sp|O22431|RL10_PINTA 60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
351723535222 uncharacterized protein LOC100305619 [Gl 0.978 0.806 0.977 2e-98
356500803222 PREDICTED: 60S ribosomal protein L10-lik 0.978 0.806 0.977 2e-98
449459224220 PREDICTED: 60S ribosomal protein L10-lik 0.994 0.827 0.956 3e-98
388501178223 unknown [Lotus japonicus] 1.0 0.820 0.945 4e-98
313586525220 60S ribosomal protein L10B [Hevea brasil 1.0 0.831 0.945 8e-98
356509104223 PREDICTED: 60S ribosomal protein L10-lik 1.0 0.820 0.939 2e-97
224146592220 predicted protein [Populus trichocarpa] 1.0 0.831 0.928 3e-97
313586447183 60S ribosomal protein L10A [Hevea brasil 1.0 1.0 0.934 4e-97
192910686224 QM-like protein [Elaeis guineensis] 0.994 0.812 0.934 6e-97
351724285223 uncharacterized protein LOC100499685 [Gl 1.0 0.820 0.934 6e-97
>gi|351723535|ref|NP_001238050.1| uncharacterized protein LOC100305619 [Glycine max] gi|255626107|gb|ACU13398.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 175/179 (97%), Positives = 178/179 (99%)

Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFL 179
           KFPGRQKIIVSRKWGFTKFSRSDYL+FKSENRIVPDGVNAKLLGCHGPLA+R+PGRAFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFL 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356500803|ref|XP_003519220.1| PREDICTED: 60S ribosomal protein L10-like [Glycine max] Back     alignment and taxonomy information
>gi|449459224|ref|XP_004147346.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] gi|449517467|ref|XP_004165767.1| PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388501178|gb|AFK38655.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|313586525|gb|ADR71273.1| 60S ribosomal protein L10B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356509104|ref|XP_003523292.1| PREDICTED: 60S ribosomal protein L10-like [Glycine max] Back     alignment and taxonomy information
>gi|224146592|ref|XP_002326063.1| predicted protein [Populus trichocarpa] gi|118481760|gb|ABK92819.1| unknown [Populus trichocarpa] gi|118487613|gb|ABK95632.1| unknown [Populus trichocarpa] gi|222862938|gb|EEF00445.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|313586447|gb|ADR71234.1| 60S ribosomal protein L10A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|192910686|gb|ACF06451.1| QM-like protein [Elaeis guineensis] Back     alignment and taxonomy information
>gi|351724285|ref|NP_001238332.1| uncharacterized protein LOC100499685 [Glycine max] gi|255625765|gb|ACU13227.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query183
TAIR|locus:2202810221 RPL10B "ribosomal protein L10 1.0 0.828 0.863 5.6e-84
TAIR|locus:2012612220 SAC52 "SUPPRESSOR OF ACAULIS 5 0.989 0.822 0.861 1.9e-83
TAIR|locus:2195155221 SAG24 "senescence associated g 1.0 0.828 0.846 1.3e-82
FB|FBgn0024733218 RpL10 "Ribosomal protein L10" 0.983 0.825 0.638 1.7e-59
UNIPROTKB|Q90YV9215 RL10 "60S ribosomal protein l1 0.923 0.786 0.686 5.7e-59
DICTYBASE|DDB_G0288273217 rpl10 "S60 ribosomal protein L 0.923 0.778 0.644 7.3e-59
ZFIN|ZDB-GENE-030131-8656215 rpl10 "ribosomal protein L10" 0.923 0.786 0.686 1.2e-58
UNIPROTKB|Q9XSI3214 RPL10 "60S ribosomal protein L 0.918 0.785 0.678 2.5e-58
UNIPROTKB|Q29195214 RPL10 "60S ribosomal protein L 0.918 0.785 0.678 2.5e-58
UNIPROTKB|P27635214 RPL10 "60S ribosomal protein L 0.918 0.785 0.678 4e-58
TAIR|locus:2202810 RPL10B "ribosomal protein L10 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 158/183 (86%), Positives = 168/183 (91%)

Query:     1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
             MK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct:    38 MKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query:    61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
             RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct:    98 RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKF 157

Query:   121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH 180
             KFPGRQKIIVSRKWGFTKF+R+DY + + E RIVPDGVNAK L CHGPLA+RQPG AFL 
Sbjct:   158 KFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLS 217

Query:   181 ATA 183
             A A
Sbjct:   218 AGA 220
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS;IPI
GO:0006412 "translation" evidence=IEA;ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0010224 "response to UV-B" evidence=IEP
GO:0032502 "developmental process" evidence=IMP
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2012612 SAC52 "SUPPRESSOR OF ACAULIS 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195155 SAG24 "senescence associated gene 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0024733 RpL10 "Ribosomal protein L10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YV9 RL10 "60S ribosomal protein l10" [Ictalurus punctatus (taxid:7998)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288273 rpl10 "S60 ribosomal protein L10" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8656 rpl10 "ribosomal protein L10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSI3 RPL10 "60S ribosomal protein L10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29195 RPL10 "60S ribosomal protein L10" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P27635 RPL10 "60S ribosomal protein L10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09127RL10A_SCHPONo assigned EC number0.64320.93440.7737yesno
Q9YEY5RL10_AERPENo assigned EC number0.51280.63930.6724yesno
Q93VT9RL101_ARATHNo assigned EC number0.86180.98900.8227yesno
Q29195RL10_PIGNo assigned EC number0.67850.91800.7850yesno
Q0DKF0RL102_ORYSJNo assigned EC number0.86260.99450.8310yesno
Q6PDV7RL10_RATNo assigned EC number0.67850.91800.7850yesno
A2Y0T4RL102_ORYSINo assigned EC number0.86260.99450.8310N/Ano
Q9XSI3RL10_BOVINNo assigned EC number0.67850.91800.7850yesno
Q8SR96RL10_ENCCUNo assigned EC number0.62820.85240.7123yesno
P86048RL10L_MOUSENo assigned EC number0.67260.91800.7850yesno
Q93W22RL103_ARATHNo assigned EC number0.84691.00.8280yesno
O61231RL10_DROMENo assigned EC number0.63880.98360.8256yesno
A2ZCQ7RL101_ORYSINo assigned EC number0.85160.99450.8125N/Ano
Q96L21RL10L_HUMANNo assigned EC number0.66070.91800.7850yesno
Q6ZWV3RL10_MOUSENo assigned EC number0.67850.91800.7850yesno
Q9SPB3RL10_VITRINo assigned EC number0.90600.98900.8227N/Ano
Q09533RL10_CAEELNo assigned EC number0.67450.92340.7897yesno
Q9M5M7RL10_EUPESNo assigned EC number0.90711.00.8318N/Ano
Q08200RL10_CHICKNo assigned EC number0.66660.91800.8yesno
Q40592RL10_TOBACNo assigned EC number0.87240.81420.9933N/Ano
P45633RL10_MAIZENo assigned EC number0.85791.00.8318N/Ano
Q9P769RL10B_SCHPONo assigned EC number0.64910.93440.7737yesno
P41805RL10_YEASTNo assigned EC number0.64700.92890.7692yesno
Q54J69RL10_DICDINo assigned EC number0.64490.92340.7788yesno
Q08770RL102_ARATHNo assigned EC number0.86331.00.8280yesno
P27635RL10_HUMANNo assigned EC number0.67850.91800.7850yesno
P93847RL10_SOLMENo assigned EC number0.92300.99450.8310N/Ano
Q8TYP2RL10_METKANo assigned EC number0.5120.68300.7225yesno
Q0ITS8RL101_ORYSJNo assigned EC number0.85160.99450.8125nono
Q2TBW8RL10L_BOVINNo assigned EC number0.67260.91800.7850yesno
Q5R931RL10_PONABNo assigned EC number0.67850.91800.7850yesno
O22431RL10_PINTANo assigned EC number0.85950.97260.7807N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 1e-112
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 9e-61
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 1e-50
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 2e-43
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 3e-34
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 3e-28
TIGR01164126 TIGR01164, rplP_bact, ribosomal protein L16, bacte 0.002
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information 
 Score =  317 bits (815), Expect = e-112
 Identities = 119/173 (68%), Positives = 140/173 (80%)

Query: 2   KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLR 61
           KK  VDEFP CVH+VS E E +SSEALEAARI+ NKYM K AGKD FHLR+RVHPFHVLR
Sbjct: 39  KKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRAGKDGFHLRIRVHPFHVLR 98

Query: 62  INKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFK 121
           INKMLSCAGADRLQTGMRGAFGKP GTCARV IGQ+LLS+R K++    A EALRRAK+K
Sbjct: 99  INKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYK 158

Query: 122 FPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQP 174
           FPGRQKI+VS KWGFT ++R +Y + ++E +++ DGV+ KL+   GPL    P
Sbjct: 159 FPGRQKIVVSNKWGFTNYTREEYQKLRAEGKLIQDGVHVKLISPKGPLTKVNP 211

Length = 213
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|211627 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 183
PTZ00173213 60S ribosomal protein L10; Provisional 100.0
KOG0857212 consensus 60s ribosomal protein L10 [Translation, 100.0
TIGR00279172 L10e ribosomal protein L10.e. L10.e is distantly r 100.0
PRK04199172 rpl10e 50S ribosomal protein L10e; Reviewed 100.0
COG0197146 RplP Ribosomal protein L16/L10E [Translation, ribo 100.0
cd01433112 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e 100.0
PRK09203138 rplP 50S ribosomal protein L16; Reviewed 100.0
CHL00044135 rpl16 ribosomal protein L16 100.0
TIGR01164126 rplP_bact ribosomal protein L16, bacterial/organel 100.0
PF00252133 Ribosomal_L16: Ribosomal protein L16p/L10e; InterP 100.0
KOG3422221 consensus Mitochondrial ribosomal protein L16 [Tra 99.88
>PTZ00173 60S ribosomal protein L10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-78  Score=511.42  Aligned_cols=174  Identities=68%  Similarity=1.125  Sum_probs=170.9

Q ss_pred             CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082            1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG   80 (183)
Q Consensus         1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~   80 (183)
                      +++|+|||||+|+||+|+|++||||+||||||+|+||||.|++|+|+||||||+|||||||||||||||||||||+|||+
T Consensus        38 ~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~  117 (213)
T PTZ00173         38 RKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRG  117 (213)
T ss_pred             CCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhcCCccceEEEEEcCCcccccccccccccCchhhhhccc
Confidence            57899999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082           81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA  160 (183)
Q Consensus        81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v  160 (183)
                      |||+|+||||||++|||||||++++++.++|+|||++|++|||++|+|+++++||||+|++|||++|+++|+|++|||+|
T Consensus       118 gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP~~~kIv~~~~wgft~~~~~~~~~~~~~~~~~~~g~~~  197 (213)
T PTZ00173        118 AFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFPGRQKIVVSNKWGFTNYTREEYQKLRAEGKLIQDGVHV  197 (213)
T ss_pred             CCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCCCeEEEEEecccCccccCHHHHHHHHHCCeEecCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCC
Q 030082          161 KLLGCHGPLASRQP  174 (183)
Q Consensus       161 k~~~~~gpl~~~~~  174 (183)
                      |++++||||++|..
T Consensus       198 ~~~~~~g~l~~~~~  211 (213)
T PTZ00173        198 KLISPKGPLTKVNP  211 (213)
T ss_pred             EEeCCCCChhhhhc
Confidence            99999999999854

>KOG0857 consensus 60s ribosomal protein L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00279 L10e ribosomal protein L10 Back     alignment and domain information
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>PRK09203 rplP 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>CHL00044 rpl16 ribosomal protein L16 Back     alignment and domain information
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle Back     alignment and domain information
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
3izr_I224 Localization Of The Large Subunit Ribosomal Protein 2e-89
2zkr_h214 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-62
3izs_I221 Localization Of The Large Subunit Ribosomal Protein 5e-60
3j0l_J219 Core Of Mammalian 80s Pre-Ribosome In Complex With 6e-60
4a17_H215 T.Thermophila 60s Ribosomal Subunit In Complex With 8e-60
2pa2_A151 Crystal Structure Of Human Ribosomal Protein L10 Co 6e-58
3zf7_K213 High-resolution Cryo-electron Microscopy Structure 1e-56
1s1i_I168 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-51
3jyw_I165 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-51
3j21_N181 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-20
1yhq_H177 Crystal Structure Of Azithromycin Bound To The G209 1e-19
3i55_H174 Co-Crystal Structure Of Mycalamide A Bound To The L 1e-19
1s72_H171 Refined Crystal Structure Of The Haloarcula Marismo 3e-19
2qex_H174 Negamycin Binds To The Wall Of The Nascent Chain Ex 4e-19
1jj2_H167 Fully Refined Crystal Structure Of The Haloarcula M 5e-14
1ffk_F157 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-05
1giy_P138 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-05
>pdb|3IZR|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/182 (85%), Positives = 167/182 (91%)
Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVL 97
Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKF 157
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH 180
           KFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA R PG+AFL 
Sbjct: 158 KFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLA 217
Query: 181 AT 182
            T
Sbjct: 218 ET 219
>pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 214 Back     alignment and structure
>pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 221 Back     alignment and structure
>pdb|3J0L|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 219 Back     alignment and structure
>pdb|4A17|H Chain H, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 215 Back     alignment and structure
>pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core Domain Length = 151 Back     alignment and structure
>pdb|3ZF7|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 213 Back     alignment and structure
>pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 168 Back     alignment and structure
>pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 165 Back     alignment and structure
>pdb|3J21|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 181 Back     alignment and structure
>pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 177 Back     alignment and structure
>pdb|3I55|H Chain H, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|1S72|H Chain H, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 171 Back     alignment and structure
>pdb|2QEX|H Chain H, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|1JJ2|H Chain H, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 167 Back     alignment and structure
>pdb|1FFK|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 157 Back     alignment and structure
>pdb|1GIY|P Chain P, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query183
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 6e-85
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 3e-84
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 6e-82
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 4e-80
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 1e-70
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 2e-61
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 9e-53
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 4e-11
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 5e-09
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 2e-08
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 4e-08
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Length = 142 Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Length = 136 Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Length = 118 Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 100.0
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 100.0
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 100.0
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 100.0
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 100.0
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 100.0
3j21_N181 50S ribosomal protein L10E; archaea, archaeal, KIN 100.0
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 100.0
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 100.0
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 100.0
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 100.0
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 100.0
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Back     alignment and structure
Probab=100.00  E-value=7.9e-84  Score=543.66  Aligned_cols=177  Identities=61%  Similarity=0.983  Sum_probs=161.5

Q ss_pred             CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082            1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG   80 (183)
Q Consensus         1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~   80 (183)
                      +|||+|||||+|+||+|+|++||||+||||||||+||||+|++|||+||||||+|||||||+|||||||||||||+|||+
T Consensus        38 ~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~  117 (215)
T 4a17_H           38 RKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRG  117 (215)
T ss_dssp             CTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHSCGGGCEEEECCCCCEEEEECC-----------CTTSC
T ss_pred             CCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccC
Confidence            57899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082           81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA  160 (183)
Q Consensus        81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v  160 (183)
                      |||+|+||||||++|||||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||++|++||+|+||||+|
T Consensus       118 akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~  197 (215)
T 4a17_H          118 AFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNV  197 (215)
T ss_dssp             CCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEE
T ss_pred             CCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCeEecCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCCcccc
Q 030082          161 KLLGCHGPLASRQPGRAFLH  180 (183)
Q Consensus       161 k~~~~~gpl~~~~~~~~~~~  180 (183)
                      ||+++||||++|   ..|+.
T Consensus       198 k~~~~~gpl~~~---~~~~~  214 (215)
T 4a17_H          198 KVIGERGPLSRL---ELFRK  214 (215)
T ss_dssp             EECCTTSCTTTS---GGGC-
T ss_pred             EEccCCCCHHHH---hhhhc
Confidence            999999999999   55543
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Back     alignment and structure
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 183
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 6e-70
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 2e-54
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 4e-54
d2gyck1131 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escheri 2e-09
d2j01q1136 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus 2e-07
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  206 bits (526), Expect = 6e-70
 Identities = 104/137 (75%), Positives = 114/137 (83%)

Query: 3   KKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRI 62
           K  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RI
Sbjct: 1   KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60

Query: 63  NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKF 122
           NKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKF
Sbjct: 61  NKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKF 120

Query: 123 PGRQKIIVSRKWGFTKF 139
           PGRQKI +S+KWGFTKF
Sbjct: 121 PGRQKIHISKKWGFTKF 137
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131 Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query183
d2pa2a1137 Ribosomal protein L10e {Human (Homo sapiens) [TaxI 100.0
d1vqoh1163 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d1jj2h_167 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d2gyck1131 Ribosomal protein L16p {Escherichia coli [TaxId: 5 100.0
d2j01q1136 Ribosomal protein L16p {Thermus thermophilus [TaxI 100.0
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-62  Score=389.63  Aligned_cols=137  Identities=76%  Similarity=1.169  Sum_probs=106.3

Q ss_pred             cCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCC
Q 030082            3 KKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAF   82 (183)
Q Consensus         3 ka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ak   82 (183)
                      ||+++|||+|++|+|+|.+|||++||||||+++||||.+.+|+++||+|||+|||||||+|||++++||||||+|||+||
T Consensus         1 ~a~~~~f~~~~~L~~~e~~~i~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~~l~~k~~~~~~Gadr~~~gMrkgk   80 (137)
T d2pa2a1           1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAF   80 (137)
T ss_dssp             CCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-------------------------
T ss_pred             CCCcccCCEEEEEEEcCcccccHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcceeecchhccccccccccccccCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCccccc
Q 030082           83 GKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKF  139 (183)
Q Consensus        83 Gkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~  139 (183)
                      |+|+||||+|++|||||||++++++.+.|++||++|++|||++|+|+++++||||+|
T Consensus        81 G~p~~waArVk~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv~kk~gf~~~  137 (137)
T d2pa2a1          81 GKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF  137 (137)
T ss_dssp             ----CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC
T ss_pred             CCccEEEEEecCCcEEEEEeecccCHHHHHHHHHHHhccCCCcEEEEEecccccccC
Confidence            999999999999999999999988999999999999999999999999999999997
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure