Citrus Sinensis ID: 030088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccccccccccccccccEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccccEcccccHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msvassvpclrvptsssccssssssnpsnfrisrtklspftvtcsqgdgpirrpvapplrepsppstvkpvppsppqpsppsplsssvaqppkpaavvedknvVTLEFQRQKAKELQEYFKQKKleeanvgpffgfigkneiangrwAMFGFAVGMLteyatgsdfVDQVKILLSnfgildle
Flexible Loop (DISEMBL)
msvassvpclrvptsssccssssssnpsnfrisrtklspftvtcsqgdgpIRRPVAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Low Complexity Region (SEG)
MSVASSVPCLRVPTsssccssssssNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLREpsppstvkpvppsppqpsppsplsssvaqppKPAAVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Disordered region (IsUnstruct)
******************************************************************************************************VVTLEF*******LQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGIL***
Disordered Region (DISOPRED)
****SSVPCLRVPT***************************************************************************************NVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Disordered Region (DISEMBL)
*****************************FRISRTKLSPFTVTCSQGDGPIRRPVAPP*************************************AVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Disordered Region (DISPRO)
****SSVPCLRVPT*****************ISRTKLSPFTVTCSQGDGPIRRP*APPL*****************************************KNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTxxxxxxxxxxxxxxxxxxxxxEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGILDLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
356499409	182	PREDICTED: uncharacterized protein LOC10	0.961	0.967	0.661	1e-52
356576079	173	PREDICTED: uncharacterized protein LOC10	0.934	0.988	0.659	4e-52
359811325	173	uncharacterized protein LOC100802195 [Gl	0.945	1.0	0.655	7e-51
224085165	188	one helix protein 2 [Populus trichocarpa	0.983	0.957	0.664	2e-49
359493153	175	PREDICTED: uncharacterized protein LOC10	0.956	1.0	0.693	3e-49
224062862	188	one helix protein 2 [Populus trichocarpa	0.983	0.957	0.649	6e-49
351726070	184	uncharacterized protein LOC100527001 [Gl	0.994	0.989	0.648	1e-47
255566688	185	conserved hypothetical protein [Ricinus	0.978	0.967	0.645	7e-47
312281765	177	unnamed protein product [Thellungiella h	0.945	0.977	0.629	5e-46
388508706	175	unknown [Medicago truncatula]	0.945	0.988	0.632	1e-45

>gi|356499409|ref|XP_003518533.1| PREDICTED: uncharacterized protein LOC100804460 isoform 1 [Glycine max] gi|356499411|ref|XP_003518534.1| PREDICTED: uncharacterized protein LOC100804460 isoform 2 [Glycine max]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 147/189 (77%), Gaps = 13/189 (6%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTK-LSPFTVTCSQGDGPIRRPVAPPL 59
           MS+A S+PC+++PT SS  S +SSS+  + R S +K  +  T+  SQ +GPIRRPVAPP+
Sbjct: 1   MSMACSIPCIKIPTRSSSPSCTSSSSSYSLRFSSSKPHNSVTIRNSQAEGPIRRPVAPPI 60

Query: 60  REPSPPSTVKPVPPSPPQPSPPS----PLSSSVAQPPKPAAVV-EDKNVVTLEFQRQKAK 114
           REPS  S       S PQ   P+    P S S + P KPA VV +DKNV+TLEFQRQKAK
Sbjct: 61  REPSSSS-------SAPQLQKPTLPSQPPSPSSSPPQKPATVVGDDKNVITLEFQRQKAK 113

Query: 115 ELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174
           ELQEYFKQKKL+EA+ GPFFGFIGKNEI+NGRWAMFGFAVG+LTEYATGSDFVDQVKILL
Sbjct: 114 ELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSDFVDQVKILL 173

Query: 175 SNFGILDLE 183
           SNFGI+DLE
Sbjct: 174 SNFGIVDLE 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576079|ref|XP_003556162.1| PREDICTED: uncharacterized protein LOC100776918 [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 141/185 (76%), Gaps = 14/185 (7%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLR 60
           MSVASS PC++VP  SS  S +SSS  S    S    +  ++  SQ +GP+RRPVAP +R
Sbjct: 1   MSVASSFPCIKVPACSSSPSCTSSSTSSFRFSSSKPHAAVSIRNSQTEGPLRRPVAPSVR 60

Query: 61  EPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVV--EDKNVVTLEFQRQKAKELQE 118
           EPS  S+V    P P +PS PS +      PP  A+ V  +DKNV+TLEFQRQKAKELQE
Sbjct: 61  EPS--SSV----PQPLKPSAPSQV------PPLKASPVAGDDKNVITLEFQRQKAKELQE 108

Query: 119 YFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFG 178
           YFKQKKLE+AN GPFFGFIGKNEI+NGRWAMFGFAVG+LTEYATGSDFVDQVKILLSNFG
Sbjct: 109 YFKQKKLEDANQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSDFVDQVKILLSNFG 168

Query: 179 ILDLE 183
           I+DLE
Sbjct: 169 IVDLE 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359811325|ref|NP_001241030.1| uncharacterized protein LOC100802195 [Glycine max] gi|255645705|gb|ACU23346.1| unknown [Glycine max]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 136/183 (74%), Gaps = 10/183 (5%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLR 60
           MSVASS PC+++P  SS  S +SSS  S    S    +  ++  SQ +GP+RRPVAPP+R
Sbjct: 1   MSVASSFPCIKIPACSSSPSCTSSSTSSFRFSSSKPYAAVSIRNSQTEGPLRRPVAPPVR 60

Query: 61  EPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEYF 120
           EPS          S PQP  PSP S    Q   P A  +D NV+TLEFQRQKAKELQEYF
Sbjct: 61  EPSS---------SVPQPLKPSPPSQVPPQKASPVAG-DDNNVITLEFQRQKAKELQEYF 110

Query: 121 KQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGIL 180
           KQKKLE+AN GPFFGFIGKNEI+NGRWAMFGFAVG+LTEYATGSDFVDQVKILLSNFGI+
Sbjct: 111 KQKKLEDANQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSDFVDQVKILLSNFGIV 170

Query: 181 DLE 183
           DLE
Sbjct: 171 DLE 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085165|ref|XP_002307511.1| one helix protein 2 [Populus trichocarpa] gi|222856960|gb|EEE94507.1| one helix protein 2 [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 142/191 (74%), Gaps = 11/191 (5%)

Query: 1   MSVASSVPCLRVPT------SSSCCSSSSSSNPSNFRISRTKLSPFTVTC--SQGDGPIR 52
           MSVASS+P +++P       SS   SSS+SS  S +R S T   P+ VT   SQ +GP+R
Sbjct: 1   MSVASSIPYIKIPNPSSSSCSSLSSSSSTSSTSSYYRFS-TTTKPYIVTIRSSQAEGPVR 59

Query: 53  RPVAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQK 112
           RPVAPPLREPSPP++  P     P  SP S    +    P     VEDKNV+TLEFQRQK
Sbjct: 60  RPVAPPLREPSPPASPSPPLKPVPPSSPSS--PVAPPPKPAAKVAVEDKNVMTLEFQRQK 117

Query: 113 AKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 172
           AKELQEYFKQKKLEEA+ GPFFGF GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI
Sbjct: 118 AKELQEYFKQKKLEEADQGPFFGFFGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 177

Query: 173 LLSNFGILDLE 183
           LLSNFGI+DLE
Sbjct: 178 LLSNFGIIDLE 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493153|ref|XP_003634524.1| PREDICTED: uncharacterized protein LOC100854878 [Vitis vinifera]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/183 (69%), Positives = 140/183 (76%), Gaps = 8/183 (4%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLR 60
           MSVASS+PC+++PTSSS  SSSSSS     R S TK + FT+  SQ +GP+RRPVAP LR
Sbjct: 1   MSVASSIPCIKIPTSSSSSSSSSSSYC---RFSATKPAIFTIRSSQTEGPLRRPVAP-LR 56

Query: 61  EPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEYF 120
           EP+PP       P  P PS  SP  S    P        DKNVVTLEFQRQ AKELQ+YF
Sbjct: 57  EPAPPPLPPKPIPPSPSPSSASPPPSPPPPPSASV----DKNVVTLEFQRQVAKELQDYF 112

Query: 121 KQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGIL 180
           KQ+KLEEAN GPFFGFIGKNEI+NGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGI+
Sbjct: 113 KQRKLEEANQGPFFGFIGKNEISNGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGII 172

Query: 181 DLE 183
           DLE
Sbjct: 173 DLE 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062862|ref|XP_002300907.1| one helix protein 2 [Populus trichocarpa] gi|222842633|gb|EEE80180.1| one helix protein 2 [Populus trichocarpa]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 140/191 (73%), Gaps = 11/191 (5%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNF------RISRTKLSPFTVTC--SQGDGPIR 52
           MSVASS+P +++P  SS   S  SS+ S        R S T   P+ VT   SQ +GP+R
Sbjct: 1   MSVASSIPYIKIPNPSSSSCSFPSSSSSTSSTSSFCRFS-TITRPYIVTIRSSQAEGPVR 59

Query: 53  RPVAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQK 112
           RPVAPPLR PS P+   P     P PSP SP++       + A  V+DKNVVTLEFQRQK
Sbjct: 60  RPVAPPLRAPSSPAAPSPPLNPVPPPSPSSPVTPPPKPAAQVA--VKDKNVVTLEFQRQK 117

Query: 113 AKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 172
           AKELQEYFK+KK EEA+ GPFFGF+GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI
Sbjct: 118 AKELQEYFKKKKFEEADQGPFFGFVGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 177

Query: 173 LLSNFGILDLE 183
           LLSNFGILDLE
Sbjct: 178 LLSNFGILDLE 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726070|ref|NP_001237114.1| uncharacterized protein LOC100527001 [Glycine max] gi|255631342|gb|ACU16038.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 141/185 (76%), Gaps = 3/185 (1%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRT-KLSPFTVTCSQGDGPIRRPVAPPL 59
           MS+A S+PC+++PT SS  S +SSS  S      + K    T+  SQ +GPIRRPVAPP+
Sbjct: 1   MSMACSIPCIKIPTCSSSPSCTSSSTSSYSLRFSSSKPHSVTIRNSQAEGPIRRPVAPPI 60

Query: 60  REPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVV-EDKNVVTLEFQRQKAKELQE 118
           REPS  S+    P    +P+ PS    S + P KPA VV +DKNV+TLE QRQKAKELQE
Sbjct: 61  REPSSSSSSSSAP-QLQKPTLPSQPPPSPSPPQKPATVVGDDKNVITLELQRQKAKELQE 119

Query: 119 YFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFG 178
           YFKQKKLE+A+ GPFFGFIGKNEI+NGRWAMFGFAVG+LTEYAT SDFVDQVKILLSNFG
Sbjct: 120 YFKQKKLEQADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATDSDFVDQVKILLSNFG 179

Query: 179 ILDLE 183
           I+DLE
Sbjct: 180 IVDLE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566688|ref|XP_002524328.1| conserved hypothetical protein [Ricinus communis] gi|223536419|gb|EEF38068.1| conserved hypothetical protein [Ricinus communis]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 138/189 (73%), Gaps = 10/189 (5%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSN-----FRISRT-KLSPFTVTCSQGDGPIRRP 54
           MSVASS+P +++P  SS CSS SSS+ +      FR + T K    T+  SQ DGPIRRP
Sbjct: 1   MSVASSIPYIKIPNPSSSCSSPSSSSSATSTSSSFRFATTVKPCALTIRSSQADGPIRRP 60

Query: 55  VAPPLREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAK 114
           VAPP        +    PPSP +P PPS   +     P    V+EDKN +TLEFQRQKAK
Sbjct: 61  VAPP----LREPSPPSSPPSPLKPVPPSSPVAPPPPKPASQVVLEDKNAITLEFQRQKAK 116

Query: 115 ELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174
           ELQ+YFKQKKLEEA  GPFFGF+GKNEIANGRWAMFGFAVG+LTEYATGSDFVDQVKILL
Sbjct: 117 ELQDYFKQKKLEEAAQGPFFGFVGKNEIANGRWAMFGFAVGLLTEYATGSDFVDQVKILL 176

Query: 175 SNFGILDLE 183
           SNFGILDLE
Sbjct: 177 SNFGILDLE 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281765|dbj|BAJ33748.1| unnamed protein product [Thellungiella halophila]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 134/186 (72%), Gaps = 13/186 (6%)

Query: 1   MSVASSVPCLRV--PTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPP 58
           MSVAS + C+R+  P+SSS  SS SS+  S+FR S TK   F + CSQ +GP+RRP APP
Sbjct: 2   MSVASPIQCIRILNPSSSSSSSSCSSTTSSSFRFSATKPCVFVIRCSQTEGPLRRPSAPP 61

Query: 59  -LREPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQ 117
            LREPSP     P  PS   P PP  +S            V+ K+ +T+EFQRQKAKELQ
Sbjct: 62  TLREPSPSQKPVPPTPSSSPPPPPPQIS----------VAVDGKSAITVEFQRQKAKELQ 111

Query: 118 EYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNF 177
           +YFKQKKLE A  GPFFGF  KNEI+NGRWAMFGFAVGMLTEYATGSD VDQVKILLSNF
Sbjct: 112 DYFKQKKLEAAGQGPFFGFQPKNEISNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNF 171

Query: 178 GILDLE 183
           GI+DLE
Sbjct: 172 GIIDLE 177

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508706|gb|AFK42419.1| unknown [Medicago truncatula]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/185 (63%), Positives = 141/185 (76%), Gaps = 12/185 (6%)

Query: 1   MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLR 60
           MSV SS+PC+++PT+ S  SS S+S+ S  R S +KL   T+  +Q DGP+RRP AP ++
Sbjct: 1   MSVTSSIPCIKIPTTHSSSSSCSTSSYSF-RFSSSKLYAVTIRNAQNDGPLRRPAAPSVK 59

Query: 61  EPSP-PSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEY 119
           EPS  P  +KP PPS P P  P   SS V          +DK+VV+LEFQRQKAKELQEY
Sbjct: 60  EPSNLPQPLKPSPPSQPPPPQPQKTSSFVG---------DDKSVVSLEFQRQKAKELQEY 110

Query: 120 FKQKKLEEA-NVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFG 178
           FK+KKLE+A N GPFFGFI KNEI+NGRWAMFGFAVG+LTE+ATGSDFVDQVKILLSNFG
Sbjct: 111 FKKKKLEQAANQGPFFGFIAKNEISNGRWAMFGFAVGLLTEFATGSDFVDQVKILLSNFG 170

Query: 179 ILDLE 183
           I+DL+
Sbjct: 171 IVDLD 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2008996	172	OHP2 "AT1G34000" [Arabidopsis	0.486	0.517	0.842	7.6e-46

TAIR|locus:2008996 OHP2 "AT1G34000" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 75/89 (84%), Positives = 79/89 (88%)

Query:    95 AAVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAV 154
             A  V+ K+V T+EFQRQKAKELQEYFKQKKLE A  GPFFGF  KNEI+NGRWAMFGFAV
Sbjct:    84 AVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPKNEISNGRWAMFGFAV 143

Query:   155 GMLTEYATGSDFVDQVKILLSNFGILDLE 183
             GMLTEYATGSD VDQVKILLSNFGILDLE
Sbjct:   144 GMLTEYATGSDLVDQVKILLSNFGILDLE 172

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009642 "response to light intensity" evidence=IEP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PLN00014	250	PLN00014, PLN00014, light-harvesting-like protein	0.002

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 11   RVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLREPSPPSTVKP 70
            R P+ S     ++ + P   R++R  +S  T + +       RP  P    P  P    P
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924

Query: 71   VPPSPPQPSPPSPLSSSVAQP-PKPAAVVEDKNVV 104
             PP P  P PP P       P   PA   E    V
Sbjct: 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAV 2959

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 7   VPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLREPSPPS 66
           +  L VP  +   +  +++ PS  R +    +               P   P+RE + P 
Sbjct: 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAA-----AAANIPPKEPVRETATPP 410

Query: 67  TVKPVPPSPPQPS-PPSPLSSSVAQPPKPAAVVED 100
            V P P +PP P  P S    + A  P        
Sbjct: 411 PVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT 445

Length = 585

>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 141 EIANGRWAMFGFAVGMLTEYATGSDFVDQ 169
           E+ NGR AM GF +  L +  TG   VDQ
Sbjct: 163 ELLNGRAAMVGFFMAYLVDSLTGVGLVDQ 191

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PHA02337	35	putative high light inducible protein	99.51
PLN00014	250	light-harvesting-like protein 3; Provisional	99.47
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.03
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.39
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.32
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.31
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.22
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.19
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.15
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	98.12
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.1
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.1
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.08
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.05
PLN00171	324	photosystem light-harvesting complex -chlorophyll	98.04
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	98.04
PLN00187	286	photosystem II light-harvesting complex II protein	98.02
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.0
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.99
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.9
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.79
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.77
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.74
PLN00187	286	photosystem II light-harvesting complex II protein	97.72
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.67
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.55
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.4
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	97.32
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.28
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.13
PLN02449	485	ferrochelatase	96.86
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	96.49

>PHA02337 putative high light inducible protein

Probab=99.51  E-value=1.1e-14  Score=93.66  Aligned_cols=33  Identities=30%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088          136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD  168 (183)
Q Consensus       136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~  168 (183)
                      |++++|+||||+||+||++++++|++||++|.+
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG   33 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG   33 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence            788999999999999999999999999999864

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.47  E-value=2e-14  Score=124.62  Aligned_cols=71  Identities=30%  Similarity=0.483  Sum_probs=52.5

Q ss_pred             ceeehhhHHHHHHHHHHHh-----hhccchhccCCCccccc-----chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088          102 NVVTLEFQRQKAKELQEYF-----KQKKLEEANVGPFFGFI-----GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK  171 (183)
Q Consensus       102 ~~VtlE~qr~kaKeL~~y~-----ke~r~e~~~~~~~~Gft-----~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~  171 (183)
                      .+|+.|..|+|  .|++|-     .|+-+.+....+.|.|.     .++|++|||+|||||++++++|++||+||++|++
T Consensus       116 ~vIdaEv~rRK--~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg  193 (250)
T PLN00014        116 AVIDAEVVRRK--WLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMG  193 (250)
T ss_pred             HHHHHHHHHHH--HHhhCccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHh
Confidence            34556666654  677764     34444444555555543     4699999999999999999999999999999998


Q ss_pred             HHH
Q 030088          172 ILL  174 (183)
Q Consensus       172 ~~l  174 (183)
                      .++
T Consensus       194 ~f~  196 (250)
T PLN00014        194 NFF  196 (250)
T ss_pred             hhh
Confidence            743

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.03  E-value=1.2e-10  Score=98.46  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHh-CCchHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYAT-GSDFVDQVKI  172 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~T-G~gil~Ql~~  172 (183)
                      +.+|+||||+||+||+++++.|++| |+|+++|+..
T Consensus       136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~  171 (214)
T PLN00084        136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG  171 (214)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence            6799999999999999999999999 9999999863

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.39  E-value=8.6e-08  Score=75.75  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=29.7

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHHhCCc
Q 030088          133 FFGFIGKNEIANGRWAMFGFAVGMLTEYATGSD  165 (183)
Q Consensus       133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~g  165 (183)
                      .++|.+.+|++|||+||+||++.++.|++++.+
T Consensus        25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen   25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            566889999999999999999999999998753

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.32  E-value=2.7e-07  Score=72.96  Aligned_cols=27  Identities=37%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHH
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEY  160 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~  160 (183)
                      +.+++.+|++|||+|||||+++++.|.
T Consensus       130 ~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  130 KEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            445789999999999999999998873

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.31  E-value=5.7e-07  Score=78.69  Aligned_cols=37  Identities=30%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS  175 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls  175 (183)
                      ..|+.||||||+||++.++.|++||+|.+++|...++
T Consensus       202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hla  238 (252)
T PLN00147        202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS  238 (252)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            4799999999999999999999999999999976554

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.22  E-value=8.3e-07  Score=77.61  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      +..|+.|||+||++|+++++.+++||+|.+++|...+
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl  197 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM  197 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence            4689999999999999999999999999999987643

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.19  E-value=1e-06  Score=75.09  Aligned_cols=29  Identities=31%  Similarity=0.320  Sum_probs=27.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088          140 NEIANGRWAMFGFAVGMLTEYATGSDFVD  168 (183)
Q Consensus       140 aEi~NGRlAMiGfv~~ll~E~~TG~gil~  168 (183)
                      +|+.||||||+|++++++.|++||+|++.
T Consensus       180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        180 KELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            59999999999999999999999999863

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.15  E-value=1.9e-06  Score=75.14  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHH-HHhCCchHHHHHHHHh
Q 030088          139 KNEIANGRWAMFGFAVGMLTE-YATGSDFVDQVKILLS  175 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E-~~TG~gil~Ql~~~ls  175 (183)
                      ..|+.|||+|||+|+++++.| .+||+|.+++|..-+.
T Consensus       188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla  225 (243)
T PLN00099        188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA  225 (243)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence            479999999999999999999 5799999999876443

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=98.12  E-value=2.1e-06  Score=75.59  Aligned_cols=37  Identities=30%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      +..|+.||||||+++++.++.|++||+|.+++|...+
T Consensus       207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl  243 (262)
T PLN00025        207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  243 (262)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence            4679999999999999999999999999999987543

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.10  E-value=2.9e-06  Score=74.90  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=34.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHhh
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSN  176 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls~  176 (183)
                      ..|+.|||+||++++++++.+.+||+|.+++|...+..
T Consensus       217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hlad  254 (267)
T PLN00098        217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLAD  254 (267)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcC
Confidence            48999999999999999999999999999999765543

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.10  E-value=2.3e-06  Score=75.24  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      +..|+.||||||+++++.++.|++||+|.+++|...|
T Consensus       211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hl  247 (262)
T PLN00048        211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHL  247 (262)
T ss_pred             HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHh
Confidence            3589999999999999999999999999999987543

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.08  E-value=1.7e-06  Score=75.77  Aligned_cols=37  Identities=32%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS  175 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls  175 (183)
                      ..|+.||||||++|++.++.+++||+|.+++|...++
T Consensus       202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hla  238 (250)
T PLN00101        202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS  238 (250)
T ss_pred             HHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhc
Confidence            4899999999999999999999999999999976543

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.05  E-value=1.7e-06  Score=76.15  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088          136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD  168 (183)
Q Consensus       136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~  168 (183)
                      |.+++|++||||||+|+++.++.|++++.|++.
T Consensus        84 ~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~  116 (262)
T PLN00048         84 WLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP  116 (262)
T ss_pred             HHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence            446899999999999999999999999888864

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=98.04  E-value=4e-06  Score=75.90  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      ..|+.||||||+|+++.++.|.+||+|.++++...+
T Consensus       275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hl  310 (324)
T PLN00171        275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHL  310 (324)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHh
Confidence            369999999999999999999999999999987544

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=98.04  E-value=4e-06  Score=71.03  Aligned_cols=26  Identities=27%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGS  164 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~  164 (183)
                      ..|+.|||+|||||+++++.|+++|.
T Consensus       170 ~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        170 AIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            47999999999999999999999985

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=98.02  E-value=4.7e-06  Score=74.26  Aligned_cols=36  Identities=28%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      ..|+.||||||+++++.++.+.+||+|.+++|..-+
T Consensus       237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl  272 (286)
T PLN00187        237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL  272 (286)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            579999999999999999999999999999887544

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.00  E-value=2.2e-06  Score=75.07  Aligned_cols=32  Identities=38%  Similarity=0.628  Sum_probs=29.4

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088          136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFV  167 (183)
Q Consensus       136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil  167 (183)
                      |.+++|++||||||+|+++.++.|++++.|++
T Consensus        90 ~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         90 WFVQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            45789999999999999999999999998876

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.99  E-value=5.9e-06  Score=72.22  Aligned_cols=37  Identities=38%  Similarity=0.410  Sum_probs=33.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS  175 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls  175 (183)
                      .+|+.|||+||++|++.++.+.+||+|.+++|..-+.
T Consensus       199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hla  235 (244)
T PLN00097        199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLA  235 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhc
Confidence            4899999999999999999999999999999976554

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.90  E-value=5e-06  Score=73.43  Aligned_cols=34  Identities=24%  Similarity=0.517  Sum_probs=29.7

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088          135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD  168 (183)
Q Consensus       135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~  168 (183)
                      -|.+++|++||||||+|+++.++.|++++.|+++
T Consensus        98 ~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~  131 (267)
T PLN00098         98 KWFAQAELMHSRWAMLAVAGILIPECLERLGFIE  131 (267)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence            3557899999999999999999999998877643

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.79  E-value=8e-06  Score=71.39  Aligned_cols=33  Identities=27%  Similarity=0.489  Sum_probs=29.2

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDF  166 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi  166 (183)
                      +.|.+++|++||||||+|+++.++.|++++.|+
T Consensus        79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~  111 (244)
T PLN00097         79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGM  111 (244)
T ss_pred             HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence            345678999999999999999999999998765

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.77  E-value=9.9e-06  Score=71.22  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD  168 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~  168 (183)
                      +.+.+++|++||||||+|+++.++.|+++|...++
T Consensus        92 ~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~  126 (255)
T PLN00170         92 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE  126 (255)
T ss_pred             HHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence            34557899999999999999999999999876654

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.74  E-value=1.1e-05  Score=71.01  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.7

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDF  166 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi  166 (183)
                      +.|.+++|++||||||+|+++.++.|++++.|+
T Consensus        88 ~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         88 FARNRELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             HHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            345578999999999999999999999987655

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.72  E-value=1.2e-05  Score=71.70  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=26.9

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088          135 GFIGKNEIANGRWAMFGFAVGMLTEYATGS  164 (183)
Q Consensus       135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~  164 (183)
                      -|.+++|++||||||+|+++.++.|+++|.
T Consensus       131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        131 QRFRECELIHGRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             HHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence            356799999999999999999999998764

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.67  E-value=2e-05  Score=69.18  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=28.0

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088          135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDF  166 (183)
Q Consensus       135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi  166 (183)
                      -|.+.+|+.||||||+|+++.++.|++++.|+
T Consensus        81 ~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         81 KWYVQAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             HHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            35578999999999999999999999987654

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.55  E-value=3e-05  Score=70.31  Aligned_cols=29  Identities=24%  Similarity=0.174  Sum_probs=25.5

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDF  166 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gi  166 (183)
                      +++|+.||||||+|+++.++.|++++.+.
T Consensus       149 reaELkHGR~AMLA~~G~lv~e~l~~~g~  177 (324)
T PLN00171        149 FNFEILHARWAMLAALGVVIPEVLDLFGA  177 (324)
T ss_pred             HHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence            46899999999999999999999876554

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.40  E-value=4.7e-05  Score=66.45  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=25.9

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhC
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATG  163 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG  163 (183)
                      +.|.+++|+.||||||+|+++.++.|+++.
T Consensus        79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~  108 (243)
T PLN00099         79 LERYKESELIHCRWAMLAVPGILVPEALGL  108 (243)
T ss_pred             HHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence            445578999999999999999999999653

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=97.32  E-value=9.1e-05  Score=64.98  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.9

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHh
Q 030088          135 GFIGKNEIANGRWAMFGFAVGMLTEYAT  162 (183)
Q Consensus       135 Gft~~aEi~NGRlAMiGfv~~ll~E~~T  162 (183)
                      -|.+.+|+.||||||+|+++.++.|+++
T Consensus        71 ~~~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         71 PYLQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             HHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            3557899999999999999999999864

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.28  E-value=0.00018  Score=61.48  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGS  164 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~  164 (183)
                      +-|.+++|+.|||+||+++++.++.|.++.-
T Consensus        72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~p  102 (209)
T PLN00089         72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIP  102 (209)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence            4456789999999999999999999987643

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.13  E-value=0.00017  Score=63.62  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=28.3

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK  171 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~  171 (183)
                      +..|+.|||+||++|++.++.. .||+|-++.|+
T Consensus       222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~  254 (255)
T PLN00170        222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG  254 (255)
T ss_pred             HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence            5689999999999998766655 89999998875

>PLN02449 ferrochelatase

Probab=96.86  E-value=0.00088  Score=63.55  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             ccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHH
Q 030088          128 ANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQ  169 (183)
Q Consensus       128 ~~~~~~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Q  169 (183)
                      ..+.+.|||+.        +||+||++++..|+++|+|.+++
T Consensus       452 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        452 PVAVWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             Cchhhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence            34568899987        99999999999999999999874

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=96.49  E-value=0.0003  Score=59.77  Aligned_cols=28  Identities=29%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHH
Q 030088          133 FFGFIGKNEIANGRWAMFGFAVGMLTEY  160 (183)
Q Consensus       133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~  160 (183)
                      .+-|.+.+|+.||||||+++++.++.|.
T Consensus        60 ~~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         60 KFDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHHHHHHhhcccHHHHhhccceeecc
Confidence            3445689999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.6
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.53
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.35
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.31
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.14
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.05
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	97.98
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	97.84
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.81
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	97.77
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	97.72
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	96.48

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.60  E-value=2.1e-08  Score=84.88  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      +.+|++|||+||+||+++++.|++||+|+++|+...+
T Consensus       177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~  213 (232)
T 2bhw_A          177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  213 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred             HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            4689999999999999999999999999999987544

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.53  E-value=5e-08  Score=83.73  Aligned_cols=39  Identities=28%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088          137 IGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS  175 (183)
Q Consensus       137 t~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls  175 (183)
                      .+.+|+.|||+||+||++.++.|++||+|.++|+..-++
T Consensus       193 ~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla  231 (243)
T 3pl9_A          193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS  231 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence            357999999999999999999999999999999986543

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.35  E-value=3.3e-08  Score=85.69  Aligned_cols=36  Identities=28%  Similarity=0.359  Sum_probs=32.7

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088          136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK  171 (183)
Q Consensus       136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~  171 (183)
                      +.+.+|++|||+||+||+++++.|++||+|+++++.
T Consensus       216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            346789999999999999999999999999998865

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.31  E-value=6.5e-08  Score=84.12  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI  172 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~  172 (183)
                      +.+|++|||+||+||+++++.|++||+|+++|+..
T Consensus       225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~  259 (276)
T 2wsc_3          225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD  259 (276)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---
T ss_pred             HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            57899999999999999999999999999988764

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.14  E-value=1.7e-07  Score=80.36  Aligned_cols=36  Identities=33%  Similarity=0.548  Sum_probs=32.7

Q ss_pred             CcccccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088          132 PFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV  167 (183)
Q Consensus       132 ~~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil  167 (183)
                      ..+.|.+.+|++||||||+||++.++.|++++.|++
T Consensus        86 e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             CCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            357788999999999999999999999999998766

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.05  E-value=4.1e-07  Score=77.70  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             chhhhhhhHHHHHHHHHHHHHH-HHhCCchHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTE-YATGSDFVDQVK  171 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E-~~TG~gil~Ql~  171 (183)
                      +.+|++|||+||+||++.++.| ++||+|.++++.
T Consensus       188 r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~  222 (241)
T 2wsc_1          188 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA  222 (241)
T ss_dssp             CTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred             HHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence            5789999999999999999999 589999998765

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=97.98  E-value=2.5e-06  Score=73.25  Aligned_cols=31  Identities=29%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGS  164 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~  164 (183)
                      +.|.+++|++||||||+|+++.++.|+++|.
T Consensus        89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           89 LQRFRECELIHGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence            4567899999999999999999999999874

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=97.84  E-value=4.2e-06  Score=72.52  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088          133 FFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV  167 (183)
Q Consensus       133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil  167 (183)
                      .+.|.+++|+.||||||+|+++.++.|++++.|++
T Consensus        98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2           98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            46678999999999999999999999999876654

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.81  E-value=2.6e-06  Score=73.06  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 030088          138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI  172 (183)
Q Consensus       138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~  172 (183)
                      +..|+.|||+ ||||+++++.|++||++.++++..
T Consensus       201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~  234 (251)
T 2wsc_4          201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ  234 (251)
T ss_dssp             TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence            5789999999 999999999999999999988653

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=97.77  E-value=3.1e-07  Score=79.88  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=30.7

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088          135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV  167 (183)
Q Consensus       135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil  167 (183)
                      +|.+++|++||||||+|+++.++.|++++.|++
T Consensus        97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            788999999999999999999999999987765

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=97.72  E-value=1.2e-05  Score=68.10  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=26.4

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhC
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATG  163 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG  163 (183)
                      +.|.+++|+.||||||+|+++.++.|+++.
T Consensus        58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A           58 FSKNRELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence            345688999999999999999999999764

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=96.48  E-value=7.4e-05  Score=63.80  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYAT  162 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~T  162 (183)
                      +-|.+++|+.||||||+|+++.++.|+++
T Consensus        80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~  108 (241)
T 2wsc_1           80 LERYKESELIHCRWAMLAVPGILVPEALG  108 (241)
T ss_dssp             HHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred             HHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence            44568899999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.71
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	97.71

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.71  E-value=4.4e-09  Score=85.14  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088          139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL  174 (183)
Q Consensus       139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l  174 (183)
                      .+|+.||||||||+++.++.|++||++.+++|..-+
T Consensus       165 ~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~  200 (218)
T d1rwta_         165 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  200 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHh
Confidence            489999999999999999999999999999987543

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.71  E-value=7.2e-06  Score=65.83  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088          134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGS  164 (183)
Q Consensus       134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~  164 (183)
                      +-|.+++|+.||||||+++++.++.|+++..
T Consensus        45 ~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          45 FAKNRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhceehHhhhcceeehhhhccC
Confidence            3456889999999999999999999987643