Citrus Sinensis ID: 030102

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Secondary Structure (PSIPRED)
cccEEEEHHHHHHHHHHHHHHHEEEEEEEccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEcccEEEEEEccEEEEEEEccEEEEEEEEcccEEccccEEEEEEEEEEEcccccccHHHHHHHHHccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEEEEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEcHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEccccEEEEEcccEEEEEEcccEEEEEEcccccccccccEEEEEEEEEcHHHHHHcHHHHHHHHHcccEEEEEEEEEccEEEEEEEcccEEEEEEEEEEEcccEEEEEccccccEEEEEEc
Coil and Loop (DISEMBL)
MGKKVKWSWNSALIGAVAATATAALvtakpkdptfqLISIKLtsfklkfpvldaEVILTVHVvnpnitpikyssTTMSIFYEGsllgsapvkagsqaagscqllhiparlDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHkfkihvdshvtvdpvflDVIDQENKSELEVFVG
Flexible Loop (DISEMBL)
MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Low Complexity Region (SEG)
MGKKVKWSWNSALIGavaatataalvtaKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Disordered region (IsUnstruct)
****VKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVID************
Disordered Region (DISOPRED)
**KKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFF*DVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKS*LEVFVG
Disordered Region (DISEMBL)
MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Disordered Region (DISPRO)
***KVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255565669	184	conserved hypothetical protein [Ricinus	0.994	0.989	0.774	1e-78
388506010	187	unknown [Medicago truncatula]	0.978	0.957	0.698	1e-70
224059232	184	predicted protein [Populus trichocarpa]	1.0	0.994	0.701	2e-70
449444795	183	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.710	3e-69
356539246	191	PREDICTED: uncharacterized protein LOC10	0.994	0.952	0.730	2e-68
15229960	186	late embryogenesis abundant hydroxyproli	0.983	0.967	0.722	5e-68
297818910	186	hypothetical protein ARALYDRAFT_484859 [	0.983	0.967	0.716	1e-67
225464922	184	PREDICTED: uncharacterized protein LOC10	0.983	0.978	0.745	7e-64
115477795	192	Os08g0558300 [Oryza sativa Japonica Grou	0.989	0.942	0.505	7e-50
242081825	190	hypothetical protein SORBIDRAFT_07g02416	0.983	0.947	0.513	4e-48

>gi|255565669|ref|XP_002523824.1| conserved hypothetical protein [Ricinus communis] gi|223536912|gb|EEF38550.1| conserved hypothetical protein [Ricinus communis]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 159/182 (87%)

Query: 2   GKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVH 61
            KKVKWSW+SALIGA +ATA  AL+ AKPKDPTF LISI  TSFKL  PVLDA+++LTVH
Sbjct: 3   SKKVKWSWSSALIGAASATAVTALLNAKPKDPTFHLISISFTSFKLNLPVLDADLLLTVH 62

Query: 62  VVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARK 121
           V NPNIT I YSST+MSIFY+GSLLGSA V+AGSQ A SC+LL + ARLDGL+LAHHA K
Sbjct: 63  VTNPNITSIHYSSTSMSIFYDGSLLGSAQVEAGSQPARSCKLLRLQARLDGLQLAHHASK 122

Query: 122 FFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVF 181
           FF+DVAKR+ML +AKVDIEG AKVLWWDHKFK+HVDSH TVDPVFLDVIDQENKS+L+VF
Sbjct: 123 FFSDVAKRQMLLDAKVDIEGAAKVLWWDHKFKVHVDSHTTVDPVFLDVIDQENKSQLDVF 182

Query: 182 VG 183
           V 
Sbjct: 183 VA 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506010|gb|AFK41071.1| unknown [Medicago truncatula]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 147/179 (82%)

Query: 3   KKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHV 62
           KK +WSW SA+IGA +A A  ++++AKPKDPTF LISI  TS K   PV+DAEV+LTVHV
Sbjct: 5   KKSQWSWTSAIIGAASAVAATSILSAKPKDPTFHLISINFTSLKPSLPVVDAEVLLTVHV 64

Query: 63  VNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKF 122
            NPNI PI YSSTTMSIFYEGSLLGSAPV+AGSQ   SCQLL +PARL  L LA HA + 
Sbjct: 65  TNPNIAPINYSSTTMSIFYEGSLLGSAPVQAGSQPPRSCQLLRLPARLKALRLAKHASRV 124

Query: 123 FADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVF 181
            +DVAKREM+ +A VDI GTA+VLWWDHKFK+ V+SH+TVDPVFLDVIDQEN ++LE+F
Sbjct: 125 MSDVAKREMVLDAAVDIAGTARVLWWDHKFKVRVNSHITVDPVFLDVIDQENTAQLELF 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059232|ref|XP_002299780.1| predicted protein [Populus trichocarpa] gi|222847038|gb|EEE84585.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/184 (70%), Positives = 158/184 (85%), Gaps = 1/184 (0%)

Query: 1   MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTV 60
           MGKKVKWSW +AL+GA +ATA  AL++AKPKDPTF LI I  TSFKL+FPV+D +VILTV
Sbjct: 1   MGKKVKWSWTAALVGAASATAAVALISAKPKDPTFHLIKINFTSFKLRFPVIDTDVILTV 60

Query: 61  HVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLEL-AHHA 119
           HV NPNI PI YSST MSIFY+GSL+GSA V+AGSQ + SCQ+L + ARLDG+EL A+H+
Sbjct: 61  HVTNPNIIPIHYSSTIMSIFYDGSLIGSAQVEAGSQRSRSCQILELTARLDGVELMANHS 120

Query: 120 RKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELE 179
            KFF+DVAKREM+ +AKVDI GTA++LWW H+F +HVDSH+TVDP+FLD+IDQENKS L+
Sbjct: 121 VKFFSDVAKREMVLDAKVDIGGTARLLWWGHRFNVHVDSHITVDPLFLDIIDQENKSRLD 180

Query: 180 VFVG 183
           VF+ 
Sbjct: 181 VFLA 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444795|ref|XP_004140159.1| PREDICTED: uncharacterized protein LOC101218134 [Cucumis sativus] gi|449481051|ref|XP_004156067.1| PREDICTED: uncharacterized LOC101218134 [Cucumis sativus]

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 152/183 (83%)

Query: 1   MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTV 60
           MGKK  WSW SAL+GA +A A  A+++AKPKDPTF LISIK TSFKLK PV+D E+ILTV
Sbjct: 1   MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 60

Query: 61  HVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHAR 120
           HV NPN+ PI YSST MSIFYEGSLLGSA V AGSQ   SCQ+L +PARLDGL+LAHH  
Sbjct: 61  HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 120

Query: 121 KFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEV 180
           +F +DVAKREM+ +A VDI G A+VLWW HKFK+HVDSH+TVDPVFLDV+DQEN S+LE+
Sbjct: 121 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 180

Query: 181 FVG 183
           F+ 
Sbjct: 181 FLN 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539246|ref|XP_003538110.1| PREDICTED: uncharacterized protein LOC100782945 [Glycine max]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 151/182 (82%)

Query: 2   GKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVH 61
            KK KWSW+SA+IGA +A A +AL++AKPKDPTF LISI  TS KL FP+LDAEV+LTVH
Sbjct: 3   NKKSKWSWSSAIIGAASAVAASALISAKPKDPTFHLISINFTSLKLNFPLLDAEVLLTVH 62

Query: 62  VVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARK 121
           V NPNI PI YSST+MSIFY+GSLLGSA V+AGSQ   SCQLL +PARL  LELAHHA +
Sbjct: 63  VTNPNIAPIHYSSTSMSIFYQGSLLGSAQVQAGSQPPRSCQLLRLPARLHALELAHHATR 122

Query: 122 FFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVF 181
           F  DVA+REM  +A VDI GTA+V+WWDH FK+HVDSHVTVDPVFLDVIDQEN SELEVF
Sbjct: 123 FLHDVARREMFLDAAVDIAGTARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEVF 182

Query: 182 VG 183
             
Sbjct: 183 TA 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229960|ref|NP_190024.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|7529772|emb|CAB86916.1| putative protein [Arabidopsis thaliana] gi|332644377|gb|AEE77898.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 154/180 (85%)

Query: 3   KKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHV 62
           +KVKWSW+SALIGA +ATA A+L++AKPKDPTF LISI LTS KL  PVLDAE++LTVHV
Sbjct: 6   QKVKWSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHV 65

Query: 63  VNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKF 122
            NPNI  I YSST M+I Y+G++LGSA VKAGSQ A SCQLL +PARLDG+ELA HAR+F
Sbjct: 66  TNPNIAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQF 125

Query: 123 FADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFV 182
           F+DVA REM  EAK+ IEG AKVLWWDH F++HVDS VTVDPVFLDVI QENKS++++F+
Sbjct: 126 FSDVANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFL 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818910|ref|XP_002877338.1| hypothetical protein ARALYDRAFT_484859 [Arabidopsis lyrata subsp. lyrata] gi|297323176|gb|EFH53597.1| hypothetical protein ARALYDRAFT_484859 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 155/180 (86%)

Query: 3   KKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHV 62
           +KVKWSW+SALIGA +ATA A+L++AKPKDPTF LISI LTS KL  PVLDAE++LTVHV
Sbjct: 6   QKVKWSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHV 65

Query: 63  VNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKF 122
            NPNI  I YSSTTM+I Y+G++LGSA VKAGSQ A SCQLL +PARLDG+ELA HAR+F
Sbjct: 66  TNPNIAAIHYSSTTMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQF 125

Query: 123 FADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFV 182
           F+DVAKREM  EAK+ IEG AKV+W DH F++HVDS VTVDPVFLD+I QENKS++++F+
Sbjct: 126 FSDVAKREMKLEAKLTIEGAAKVMWLDHSFRVHVDSFVTVDPVFLDIIGQENKSQMDLFL 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464922|ref|XP_002274717.1| PREDICTED: uncharacterized protein LOC100265664 [Vitis vinifera] gi|296084897|emb|CBI28306.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 150/181 (82%), Gaps = 1/181 (0%)

Query: 1   MGKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTV 60
           MGK VKWSW SALIGA +ATA AAL+ AKPKDP F LISI LTSFK  FPVLDAEVILTV
Sbjct: 1   MGKTVKWSWTSALIGAASATAAAALINAKPKDPAFHLISISLTSFKFNFPVLDAEVILTV 60

Query: 61  HVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLE-LAHHA 119
           HV NPNI PI YSST MSIFY+GS LGSA + AGSQA  SCQ+L +PARLDGLE L  HA
Sbjct: 61  HVTNPNIAPIHYSSTAMSIFYDGSHLGSAQIDAGSQAPKSCQVLRLPARLDGLELLTQHA 120

Query: 120 RKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELE 179
            +F AD+ +REM  +A VDIEG AKVLWWDHKFK+HVDSHV VDP++LDVIDQENKS+LE
Sbjct: 121 GRFLADIRRREMTLDATVDIEGAAKVLWWDHKFKVHVDSHVVVDPLYLDVIDQENKSDLE 180

Query: 180 V 180
           +
Sbjct: 181 L 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477795|ref|NP_001062493.1| Os08g0558300 [Oryza sativa Japonica Group] gi|45736097|dbj|BAD13128.1| hypothetical protein [Oryza sativa Japonica Group] gi|113624462|dbj|BAF24407.1| Os08g0558300 [Oryza sativa Japonica Group]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 129/182 (70%), Gaps = 1/182 (0%)

Query: 2   GKKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPV-LDAEVILTV 60
             + +WSW SAL+GA +  A AA++  +P+DPTF+LISI L++F  + P  LD  + LTV
Sbjct: 10  ASRGRWSWGSALVGAASTAAAAAVLLCRPRDPTFELISISLSTFHFRPPAALDIGLTLTV 69

Query: 61  HVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHAR 120
           H  NPN+ P++Y  +T+SI Y+G+ LG+A + AG Q   SC+LLH+PARLD +ELAHHAR
Sbjct: 70  HATNPNVVPVRYGPSTVSILYDGAHLGTARLDAGEQPPTSCRLLHLPARLDAVELAHHAR 129

Query: 121 KFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEV 180
              AD A+R M  +A V I G A V  W  +F + +DSH+ VDPVFLDVI+QEN SE+++
Sbjct: 130 SILADTARRHMELDAAVKIAGEAAVALWSRRFSVSIDSHIVVDPVFLDVIEQENHSEMQL 189

Query: 181 FV 182
           ++
Sbjct: 190 YL 191

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242081825|ref|XP_002445681.1| hypothetical protein SORBIDRAFT_07g024160 [Sorghum bicolor] gi|241942031|gb|EES15176.1| hypothetical protein SORBIDRAFT_07g024160 [Sorghum bicolor]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 130/181 (71%), Gaps = 1/181 (0%)

Query: 3   KKVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKFPV-LDAEVILTVH 61
            + +WSW SAL GA    A  ALV  +P+DP F+LISI L++F  + P  LD  + LTVH
Sbjct: 9   SRRRWSWGSALAGAATTAAATALVLCRPRDPRFELISISLSAFHFRAPAALDIGLTLTVH 68

Query: 62  VVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARK 121
             NPN+ P++Y ++T+SI Y G+ LG+A + AG Q A SC+LLH+PARLDG+ELAH AR 
Sbjct: 69  ATNPNVVPVRYGASTVSILYGGAHLGTARLDAGEQPATSCRLLHLPARLDGVELAHRARA 128

Query: 122 FFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVF 181
             +DVA+R M  +A V+I G A VL W   F + +DSH+TVDPVFL+V++QEN+SE++++
Sbjct: 129 ILSDVARRHMELDAAVEIAGEAAVLLWSRPFSVRIDSHITVDPVFLEVVEQENRSEMQLY 188

Query: 182 V 182
           +
Sbjct: 189 L 189

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2100177	186	AT3G44380 "AT3G44380" [Arabido	0.983	0.967	0.683	4.7e-64
TAIR|locus:2142040	215	AT4G13270 "AT4G13270" [Arabido	0.759	0.646	0.278	4.3e-08
TAIR|locus:2018154	227	AT1G52330 "AT1G52330" [Arabido	0.683	0.550	0.234	1.4e-05
TAIR|locus:2045771	231	AT2G01080 "AT2G01080" [Arabido	0.743	0.588	0.256	0.00011

TAIR|locus:2100177 AT3G44380 "AT3G44380" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 123/180 (68%), Positives = 143/180 (79%)

Query:     3 KKVKWSWNSALIGXXXXXXXXXXXXXKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHV 62
             +KVKWSW+SALIG             KPKDPTF LISI LTS KL  PVLDAE++LTVHV
Sbjct:     6 QKVKWSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHV 65

Query:    63 VNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKF 122
              NPNI  I YSST M+I Y+G++LGSA VKAGSQ A SCQLL +PARLDG+ELA HAR+F
Sbjct:    66 TNPNIAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQF 125

Query:   123 FADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVTVDPVFLDVIDQENKSELEVFV 182
             F+DVA REM  EAK+ IEG AKVLWWDH F++HVDS VTVDPVFLDVI QENKS++++F+
Sbjct:   126 FSDVANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFL 185

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009269 "response to desiccation" evidence=IEA

TAIR|locus:2142040 AT4G13270 "AT4G13270" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 41/147 (27%), Positives = 62/147 (42%)

Query:    30 PKDPTFQLISIKLTSFKLKFP---VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLL 86
             P DP   +  I L    +       LD    LT+ V N +   + Y S  +SI Y G  L
Sbjct:    65 PSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVSIGYRGREL 124

Query:    87 GSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVL 146
             G    K G   A     +     LDGLE+ H       D+AK  + F+    ++G   VL
Sbjct:   125 GLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVL 184

Query:   147 WWDHKFKIHVDSHVTVDPVFLDVIDQE 173
                  F I +   V+ + V+++V +Q+
Sbjct:   185 L----FNIPIQGKVSCE-VYVNVNNQK 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2018154 AT1G52330 "AT1G52330" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 30/128 (23%), Positives = 56/128 (43%)

Query:    30 PKDPTFQLISIKLTSFKLK---FPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLL 86
             P DP  ++I +K++   +     P +D  +++T+ V N ++    ++   ++I Y G  L
Sbjct:    64 PSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTL 123

Query:    87 GSAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVL 146
             G      G   A     L   A LDG+ +         D+AK  + F+   +  G   VL
Sbjct:   124 GHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL 183

Query:   147 WWDHKFKI 154
             ++    K+
Sbjct:   184 FFRFPLKV 191

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045771 AT2G01080 "AT2G01080" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 38/148 (25%), Positives = 67/148 (45%)

Query:    29 KPKDPTFQLISIKLTSFKLKFP--VLD---AEVILTVHV----VNPNITPIKYSSTTMSI 79
             KPK P F L  + +    +  P  VLD   A + LT+ +    VNPN   I+Y  ++ ++
Sbjct:    67 KPKKPQFDLQQVAVVYMGISNPSAVLDPTTASLSLTIRMLFTAVNPNKVGIRYGESSFTV 126

Query:    80 FYEGSLLGSAPVKAGSQAAGSCQLLHIPARLDGLELAH-HARKFFADVAKREML-FEAKV 137
              Y+G  LG A V    Q A S + +     +D + L   HA     D +  + +    + 
Sbjct:   127 MYKGMPLGRATVPGFYQDAHSTKNVEATISVDRVNLMQAHAADLVRDASLNDRVELTVRG 186

Query:   138 DIEGTAKVLWWDHK-FKIHVDSHVTVDP 164
             D+    +V+ +D    ++ V+  + + P
Sbjct:   187 DVGAKIRVMNFDSPGVQVSVNCGIGISP 214


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       170   0.00086  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.04u 0.21s 14.25t   Elapsed:  00:00:01
  Total cpu time:  14.04u 0.21s 14.25t   Elapsed:  00:00:01
  Start:  Fri May 10 08:22:04 2013   End:  Fri May 10 08:22:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
smart00769	100	smart00769, WHy, Water Stress and Hypersensitive r	3e-13
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	5e-09
PLN03160	219	PLN03160, PLN03160, uncharacterized protein; Provi	1e-05

>gnl|CDD|214812 smart00769, WHy, Water Stress and Hypersensitive response

 Score = 62.3 bits (152), Expect = 3e-13
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 41  KLTSFKL-KFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPV-KAGSQAA 98
            +   +      L+ E++L V V NPN  PI  +  +  ++  G  LGS  +  +G+   
Sbjct: 1   DVVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPG 60

Query: 99  GSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDI 139
               +L +P  +  L LA       A+  +     + K+ +
Sbjct: 61  NGRTVLDVPVTV-NLFLAEALIWHIANGEEIPYRLDGKLTV 100

Length = 100

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 59  TVHVVNPNITPIKYSSTTMSIFYEGSLLGSA-PVKAGSQAAGSCQLLHIPARLDGLELAH 117
           T+ V NPN  P+ Y   +  + Y G  L S    + G+  AG    L +P  +   +LA 
Sbjct: 1   TLRVRNPNSFPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLA- 59

Query: 118 HARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKIHVDSHVT 161
              +   D+    +  E    + G  KV     K    V     
Sbjct: 60  ---RLLKDLLAVGL--ELPYTLRGRLKVG-GPVKGSRTVPLSKE 97

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

>gnl|CDD|215609 PLN03160, PLN03160, uncharacterized protein; Provisional

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 31  KDPTFQLISI---KLTSFKLKFPVLDAEVILT--VHVVNPNITPIKYSSTTMSIFYEGSL 85
           KDP  ++  +   KL             + L   V V NPN+   KYS+TT +I+Y G++
Sbjct: 65  KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTV 124

Query: 86  LGSA 89
           +G A
Sbjct: 125 VGEA 128

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.59
smart00769	100	WHy Water Stress and Hypersensitive response.	99.03
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.58
COG5608	161	LEA14-like dessication related protein [Defense me	97.96
PF14155	112	DUF4307: Domain of unknown function (DUF4307)	94.97
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	93.73

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=3.2e-41  Score=272.14  Aligned_cols=162  Identities=20%  Similarity=0.352  Sum_probs=149.2

Q ss_pred             HHHHheeEEEEecCCCeEEEEEEEEeeEEecC-----CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC
Q 030102           18 AATATAALVTAKPKDPTFQLISIKLTSFKLKF-----PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK   92 (183)
Q Consensus        18 ~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~~~-----~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip   92 (183)
                      +++++++|++||||+|+|+++++++++|++++     +.+|++++++++++|||+++|+|++++++++|+|+.+|++.+|
T Consensus        52 ~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p  131 (219)
T PLN03160         52 TTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP  131 (219)
T ss_pred             HHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC
Confidence            34456788899999999999999999999864     3689999999999999999999999999999999999999999


Q ss_pred             CeEecCCCeEEEEEEEEEeccccccchhhhhhccccCeEEEEEEEEEEEEEEEEE-EeeeeEEEEEEEEEEeCCcceEEe
Q 030102           93 AGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLW-WDHKFKIHVDSHVTVDPVFLDVID  171 (183)
Q Consensus        93 ~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~-~~~~~~~~v~C~~~v~~~~~~i~~  171 (183)
                      +|+|++++|+.+++++.+.+.++.+ .++|.+|+++|.+||+++++++|||++++ ++++++++++|+++++..+..+++
T Consensus       132 ~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~  210 (219)
T PLN03160        132 PGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQG  210 (219)
T ss_pred             CcccCCCCeEEEEEEEEEEeceecc-chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEec
Confidence            9999999999999999888887766 37899999999999999999999999998 578899999999999999999999


Q ss_pred             cccccceee
Q 030102          172 QENKSELEV  180 (183)
Q Consensus       172 ~~C~~~~~~  180 (183)
                      ++|+.++++
T Consensus       211 ~~C~~~~~~  219 (219)
T PLN03160        211 QKCKRHVDL  219 (219)
T ss_pred             cEecccccC
Confidence            999998764

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.59  E-value=1.6e-14  Score=101.88  Aligned_cols=97  Identities=26%  Similarity=0.365  Sum_probs=74.6

Q ss_pred             EEEEeCCCeeeEEEcCeEEEEEECCEEEE-eEEeCCeEecCCCeEEEEEEEEEeccccccchhhhhhccccCeEEEEEEE
Q 030102           59 TVHVVNPNITPIKYSSTTMSIFYEGSLLG-SAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKV  137 (183)
Q Consensus        59 ~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg-~~~ip~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~  137 (183)
                      +++++|||.++++|++.+++++|+|+.+| ....|+|+||+++++.+.+.+.+....+   ...+..+. +|..++++..
T Consensus         1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~   76 (101)
T PF03168_consen    1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY   76 (101)
T ss_dssp             EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred             CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence            57999999999999999999999999999 7778999999999999988888776654   23455555 6677788888


Q ss_pred             EEEEEEEEE-E-EeeeeEEEEEEE
Q 030102          138 DIEGTAKVL-W-WDHKFKIHVDSH  159 (183)
Q Consensus       138 ~v~~rv~~~-~-~~~~~~~~v~C~  159 (183)
                      +++|++++. . +..++++.++|+
T Consensus        77 ~~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   77 RIRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             EEEEEEEEcccceeeeEEEeEEeE
Confidence            899999963 2 334455666654

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=99.03  E-value=7.1e-09  Score=73.80  Aligned_cols=83  Identities=27%  Similarity=0.467  Sum_probs=67.6

Q ss_pred             cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEEEeccccccchhhhhhccccC
Q 030102           51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKR  129 (183)
Q Consensus        51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g  129 (183)
                      .++.++.+.+++.|||.+++.|++.+.+++|+|.++|++..+ ++.+|+++++.+.+++.+. ...   ...+..++.+|
T Consensus        12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~---~~~~~~~l~~~   87 (100)
T smart00769       12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL---AEALIWHIANG   87 (100)
T ss_pred             ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH---hHHHHHhhccC
Confidence            688999999999999999999999999999999999999996 7999999999999888883 221   34566666555


Q ss_pred             e-EEEEEEE
Q 030102          130 E-MLFEAKV  137 (183)
Q Consensus       130 ~-v~l~~~~  137 (183)
                      . +++++++
T Consensus        88 ~~~~y~l~g   96 (100)
T smart00769       88 EEIPYRLDG   96 (100)
T ss_pred             CCccEEEEE
Confidence            3 4544333

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.58  E-value=3.2e-05  Score=63.00  Aligned_cols=101  Identities=13%  Similarity=0.281  Sum_probs=75.2

Q ss_pred             eeehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeEEecC--CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCE
Q 030102            7 WSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKF--PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGS   84 (183)
Q Consensus         7 ~~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~~~--~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~   84 (183)
                      |.+++.++|+++..  |+...+-||.-.++-.++......++.  ..+..+++-.++++|||+.++.-.+.++++.|...
T Consensus        77 yV~~sV~~CLl~~~--L~iFFLfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~  154 (238)
T PF07092_consen   77 YVFLSVLLCLLLSG--LVIFFLFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKT  154 (238)
T ss_pred             EeeHHHHHHHHHHH--heEEEEeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEe
Confidence            45566677876543  444556688766665555544444554  46899999999999999999999999999999999


Q ss_pred             EEEeEEeCC-eEecCCCeEEEEEEEE
Q 030102           85 LLGSAPVKA-GSQAAGSCQLLHIPAR  109 (183)
Q Consensus        85 ~vg~~~ip~-f~q~~~~t~~v~~~~~  109 (183)
                      .+|.+.... ...++++.+.+..++.
T Consensus       155 VVG~~~~~~~~~I~Prs~~q~~~tV~  180 (238)
T PF07092_consen  155 VVGKGKNSNITVIGPRSSKQVNYTVK  180 (238)
T ss_pred             EEeeeEecceEEecccCCceEEEEee
Confidence            999998864 4678887776665443

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.96  E-value=0.0027  Score=48.37  Aligned_cols=114  Identities=20%  Similarity=0.356  Sum_probs=83.3

Q ss_pred             eEEEEecCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEe-CCeEecCCCeE
Q 030102           24 ALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPV-KAGSQAAGSCQ  102 (183)
Q Consensus        24 ~~~v~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~i-p~f~q~~~~t~  102 (183)
                      +...++  .|.++--.+..-...    .....+..++.+.|||.+++--.+.+.+++-+|.++|++.. .++..++.+..
T Consensus        26 ~~i~~~--~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~   99 (161)
T COG5608          26 CMIPVK--KPGVESMKAKWGKVT----NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRE   99 (161)
T ss_pred             CceEcC--CCCceEEEEEEEEEe----ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeE
Confidence            444443  777666666655544    34467888999999999999999999999999999999998 46889999999


Q ss_pred             EEEEEEEEeccccccchhhhhhccccCeEEEEEEEEEEEEEEEEE
Q 030102          103 LLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLW  147 (183)
Q Consensus       103 ~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~  147 (183)
                      ++++++.+...++..   .+...+.+|+=. .++.++.+.+++.+
T Consensus       100 tvdv~l~~d~~~~ke---~w~~hi~ngErs-~Ir~~i~~~v~vg~  140 (161)
T COG5608         100 TVDVPLRLDNSKIKE---WWVTHIENGERS-TIRVRIKGVVKVGG  140 (161)
T ss_pred             EEEEEEEEehHHHHH---HHHHHhhccCcc-cEEEEEEEEEEEcc
Confidence            999988888766543   344455566521 24456666666665

>PF14155 DUF4307: Domain of unknown function (DUF4307)

Probab=94.97  E-value=0.68  Score=33.55  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             ceeeeehHHHHHHHHHHHheeEEEEe-cCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCC-eeeEEEcCeEEEEEE
Q 030102            4 KVKWSWNSALIGAVAATATAALVTAK-PKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPN-ITPIKYSSTTMSIFY   81 (183)
Q Consensus         4 ~~~~~~~~~li~~~~~~~~l~~~v~r-P~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN-~~~i~Y~~~~~~v~Y   81 (183)
                      ++||.|.++++.++++++.++|+.+. ...|.+   +.+..+|+..+. -+.++++.++-. |. ..-=    .--..-|
T Consensus         2 ~rr~~~~~~~v~~vv~~~~~~w~~~~~~~~~~v---~~~~~gf~vv~d-~~v~v~f~Vtr~-~~~~a~C----~VrA~~~   72 (112)
T PF14155_consen    2 RRRKLVIAGAVLVVVAGAVVAWFGYSQFGSPPV---SAEVIGFEVVDD-STVEVTFDVTRD-PGRPAVC----IVRALDY   72 (112)
T ss_pred             CcceeEehHHHHHHHHHHHHhHhhhhhccCCCc---eEEEEEEEECCC-CEEEEEEEEEEC-CCCCEEE----EEEEEeC
Confidence            45666666666666566666666555 556665   344445555442 123333334433 55 2210    1112457


Q ss_pred             CCEEEEeEE--eCCeEecCCCeEEEEEEEEEe
Q 030102           82 EGSLLGSAP--VKAGSQAAGSCQLLHIPARLD  111 (183)
Q Consensus        82 ~g~~vg~~~--ip~f~q~~~~t~~v~~~~~~~  111 (183)
                      ++..+|.-.  +||   +..++..+.+++...
T Consensus        73 d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt  101 (112)
T PF14155_consen   73 DGAEVGRREVLVPP---SGERTVRVTVTVRTT  101 (112)
T ss_pred             CCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence            777788544  454   333444444444333

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=93.73  E-value=0.15  Score=44.44  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEe
Q 030102           51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGS   88 (183)
Q Consensus        51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~   88 (183)
                      .--.=|++.|.+.|||.+.+.-++.++++|=+-.-+|.
T Consensus       345 ~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg~  382 (387)
T PF12751_consen  345 EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVGT  382 (387)
T ss_pred             cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccCc
Confidence            34455778899999999999999999999877655553

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.82
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.74
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.48

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.82  E-value=2.2e-08  Score=77.13  Aligned_cols=103  Identities=12%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             CCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEE
Q 030102           31 KDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPAR  109 (183)
Q Consensus        31 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~  109 (183)
                      +.|+++++++++.+++..    ..++.+.+++.|||..++.+.+.+.++.-+|..++++..| ++..|+++++.+.+++.
T Consensus        43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~  118 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK  118 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred             CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence            689999999999988754    4778899999999999999999999999999999999997 68999999999998888


Q ss_pred             Eeccccccchhhhhhccc-cCeEEEEEEEEEEE
Q 030102          110 LDGLELAHHARKFFADVA-KREMLFEAKVDIEG  141 (183)
Q Consensus       110 ~~~~~l~~~~~~l~~d~~-~g~v~l~~~~~v~~  141 (183)
                      +.-..+    ..+..|+. .+.++.++++++.+
T Consensus       119 v~~~~l----~~~~~~l~~~~~i~Y~L~g~L~i  147 (174)
T 1yyc_A          119 VAYSIA----VSLMKDMCTDWDIDYQLDIGLTF  147 (174)
T ss_dssp             ESHHHH----HHTCCCCCSSEEECEEEEEEEEE
T ss_pred             EEHHHH----HHHHHhcCCCCccceEEEEEEEe
Confidence            764332    23445553 45788776665543

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.74  E-value=9.2e-09  Score=77.61  Aligned_cols=102  Identities=20%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             CCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEE
Q 030102           31 KDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPAR  109 (183)
Q Consensus        31 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~  109 (183)
                      +.|+++++++++.+++.    ...++.+.+++.|||..++.+.+.+.++.-+|++++++..+ ++..|+++++.+.+++.
T Consensus        20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~   95 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV   95 (151)
T ss_dssp             CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred             CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence            67999999998887654    45678899999999999999999999999999999999997 69999999999988877


Q ss_pred             Eeccccccchhhhhhcc-ccCeEEEEEEEEEE
Q 030102          110 LDGLELAHHARKFFADV-AKREMLFEAKVDIE  140 (183)
Q Consensus       110 ~~~~~l~~~~~~l~~d~-~~g~v~l~~~~~v~  140 (183)
                      +.-..+.+    +..++ ..+.++.++++++.
T Consensus        96 v~~~~l~~----~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           96 VPYSILFN----LARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEHHHHHH----HHHHHHHHSEEEEEEEEEEE
T ss_pred             EEHHHHHH----HHHhcccCCcccEEEEEEEE
Confidence            77543333    33333 35788888655554

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.48  E-value=3.4e-06  Score=62.38  Aligned_cols=68  Identities=19%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEe-CCeEecCCCeEEEEEEEEEeccccccc
Q 030102           51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPV-KAGSQAAGSCQLLHIPARLDGLELAHH  118 (183)
Q Consensus        51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~i-p~f~q~~~~t~~v~~~~~~~~~~l~~~  118 (183)
                      .-...+.+.+++.|||..++.+++.+.+++.+|.++|++.. ..+..|+.+++.+.+++.++..++...
T Consensus        15 ~~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~   83 (136)
T 3but_A           15 DSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW   83 (136)
T ss_dssp             SSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH
T ss_pred             CcEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH
Confidence            34567889999999999999999999999999999999986 589999999999999988887776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1xo8a_	151	b.1.25.1 (A:) Putative dessication related protein	2e-04

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 28  AKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLG 87
                P   +  + L            E +  V V NP    I     + +    G  +G
Sbjct: 17  TAIPKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIG 72

Query: 88  SAPV-KAGSQAAGSCQLLHIPARLDGLELAHHARKFFAD 125
              +   GS  A     L IP  +    L + AR    D
Sbjct: 73  KGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVD 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.78

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=2.4e-09  Score=79.03  Aligned_cols=104  Identities=19%  Similarity=0.265  Sum_probs=81.5

Q ss_pred             ecCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEE
Q 030102           29 KPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIP  107 (183)
Q Consensus        29 rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~  107 (183)
                      +-+.|++++.++++.+++.    ...++.+.+++.|||..++..++.+.+++.+|..++++..+ ++..|+++++.+.++
T Consensus        18 ~~~kPev~l~~v~i~~v~~----~~~~l~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~~v~vp   93 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP   93 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTT----TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred             CCCCCeEEEEEEEeeeccc----ceEEEEEEEEEECCCCCceeeeeEEEEEEECCEEEEeEecCCCcEEcCCCcEEEEEE
Confidence            5568999999999988775    35778889999999999999999999999999999999996 689999999999888


Q ss_pred             EEEeccccccchhhhhhcc-ccCeEEEEEEEEEE
Q 030102          108 ARLDGLELAHHARKFFADV-AKREMLFEAKVDIE  140 (183)
Q Consensus       108 ~~~~~~~l~~~~~~l~~d~-~~g~v~l~~~~~v~  140 (183)
                      +.+.-..+    ..+..|+ .++.++.++++.+.
T Consensus        94 v~v~~~~l----~~~~~~i~~~~~i~Y~l~g~l~  123 (151)
T d1xo8a_          94 VVVPYSIL----FNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             CCEEHHHH----HHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEHHHH----HHHHHhhccCCCccEEEEEEEE
Confidence            77654333    2344444 34567776444443