Citrus Sinensis ID: 030112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEcccccccEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEccccccccccccccHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEcccccEccEcccccEccHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MIRLFKVKEkqkedaenntggtpvkkQCARELRLHkditelnlpeackisfpngqddlmnfevsikpdegyyqngtfvfsfevppiyphdapkvkcktkvyhpnidlegnVCLNVLredwkpvlniNTIIYGLYhlftepnhedplnhdaaellrdspacfETNVRMALqggyigdeyfepvm
Flexible Loop (DISEMBL)
mirlfkvkekqkedaenntggtpvkkqcaRELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Low Complexity Region (SEG)
MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Disordered region (IsUnstruct)
******************************ELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPN********AAELLRDSPACFETNVRMALQGGYIGDEYF****
Disordered Region (DISOPRED)
MIRLF*******************************DITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Disordered Region (DISEMBL)
MIRLFKVK****************KKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Disordered Region (DISPRO)
MIRLFKVKEK********************ELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF*PVM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9SDY5	184	NEDD8-conjugating enzyme	yes	no	0.978	0.972	0.788	3e-83
Q9ZU75	185	Probable NEDD8-conjugatin	no	no	1.0	0.989	0.729	9e-78
Q6DCZ9	183	NEDD8-conjugating enzyme	N/A	no	0.983	0.983	0.610	4e-60
P61082	183	NEDD8-conjugating enzyme	yes	no	0.983	0.983	0.610	9e-60
P61081	183	NEDD8-conjugating enzyme	yes	no	0.983	0.983	0.610	9e-60
A3KN22	183	NEDD8-conjugating enzyme	yes	no	0.983	0.983	0.610	9e-60
Q6P8D9	183	NEDD8-conjugating enzyme	yes	no	0.983	0.983	0.605	2e-59
Q9VSF3	181	NEDD8-conjugating enzyme	yes	no	0.961	0.972	0.577	5e-55
Q6C9W0	179	NEDD8-conjugating enzyme	yes	no	0.967	0.988	0.513	3e-51
Q54TI6	230	NEDD8-conjugating enzyme	yes	no	0.934	0.743	0.497	6e-48

>sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1

 Score =  307 bits (786), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 160/180 (88%), Gaps = 1/180 (0%)

Query: 1   MIRLFKVKEKQKEDAENNT-GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N T GG  VKKQ A ELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRED
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED 120

Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
           WKPVLNINT+IYGL+HLFTEPN EDPLNHDAA +LRD+P  FETNVR A+ GGY+G  +F
Sbjct: 121 WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFF 180

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9ZU75|UB12L_ARATH Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1

 Score =  288 bits (738), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 135/185 (72%), Positives = 160/185 (86%), Gaps = 2/185 (1%)

Query: 1   MIRLFKVKEKQKEDAENNTG--GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI LFKVKEKQ+E++++N G   + VKKQ A ELRLHKDI+ELNLP++CKISFPNG++DL
Sbjct: 1   MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDL 60

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           MNFEV+IKPDEGYY +G FVFSF+V  +YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRE
Sbjct: 61  MNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE 120

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVLNINT+IYGL+HLFTEPN+EDPLNH+AA +LRD+P  FE NVR A+ GG +G   
Sbjct: 121 DWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTS 180

Query: 179 FEPVM 183
           F   M
Sbjct: 181 FPRCM 185

Accepts the ubiquitin-like protein NEDD8/RUB1 from the ECR1-AXR1 E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DCZ9|UBC12_XENLA NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1

 Score =  230 bits (587), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDITELNLP+ C+I F +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct: 58  LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct: 118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query: 179 FEPVM 183
           FE  +
Sbjct: 178 FERCL 182

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61082|UBC12_MOUSE NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1

 Score =  229 bits (584), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct: 118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query: 179 FEPVM 183
           FE  +
Sbjct: 178 FERCL 182

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61081|UBC12_HUMAN NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1

 Score =  229 bits (584), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct: 118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query: 179 FEPVM 183
           FE  +
Sbjct: 178 FERCL 182

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A3KN22|UBC12_BOVIN NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1

 Score =  229 bits (584), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct: 58  LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct: 118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query: 179 FEPVM 183
           FE  +
Sbjct: 178 FERCL 182

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P8D9|UBC12_XENTR NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/185 (60%), Positives = 143/185 (77%), Gaps = 5/185 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGT--PVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
           MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C+I F +  DDL
Sbjct: 1   MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDL 57

Query: 59  MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
           +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct: 58  LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query: 119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct: 118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query: 179 FEPVM 183
           FE  +
Sbjct: 178 FERCL 182

Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase rbx1, but not rbx2, suggests that the rbx1-ube2m complex neddylates specific target proteins, such as cul1, cul2, cul3 and cul4. Involved in cell proliferation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VSF3|UBC12_DROME NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=2 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 136/180 (75%), Gaps = 4/180 (2%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+ QK+D E    G+  KK  A +LR+ KDI ELNLP  C   FP+  +DL+N
Sbjct: 1   MIKLFTLKQ-QKKDGEQK--GSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLN 56

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           F++ I PDEG+Y++G FVF+F V   YPH+ PKVKC T+VYHPNIDL+GNVCLN+LREDW
Sbjct: 57  FKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDW 116

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
            PVLNIN+I+YGL  LF EPN EDPLN +AA++L+ +   FE NV+ A++GG +G+ YFE
Sbjct: 117 NPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFE 176

Accepts the ubiquitin-like protein NEDD8 from the Uba3-Ula1 E1 complex and catalyzes its covalent attachment to other proteins.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6C9W0|UBC12_YARLI NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=UBC12 PE=3 SV=1

 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 131/183 (71%), Gaps = 6/183 (3%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           M++++ +KEKQ  +     GG+  KK  A +LR+ KD++EL+LP   K  FP+  +D+MN
Sbjct: 1   MLKIWSMKEKQAAE-----GGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSA-EDIMN 54

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FE++++PDEG+YQ G F FSF V P +PH+ PKVKC  KVYHPNIDLEGNVCLN+LREDW
Sbjct: 55  FELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDW 114

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVL++N ++ GL +LF EPN  DPLN DAA  +  +   F+ NV+ ++ GG +  E F+
Sbjct: 115 KPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVKHSMAGGSVAGERFD 174

Query: 181 PVM 183
            V+
Sbjct: 175 CVL 177

Accepts the ubiquitin-like protein NEDD8/RUB1 from the UBA3-ULA1 E1 complex and catalyzes its covalent attachment to other proteins.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54TI6|UBC12_DICDI NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1

 Score =  190 bits (482), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 121/179 (67%), Gaps = 8/179 (4%)

Query: 5   FKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVS 64
           F +K KQ  ++ +       K+    ELR  KDI E+ +P  C +SF +  +D++NF +S
Sbjct: 60  FSLKTKQSSESGS-------KRANPAELRAQKDIDEMEVPTGCAVSFKD-TNDILNFNLS 111

Query: 65  IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVL 124
           I P +G YQ+ TF F+  +P  YP+D PKV C T VYHPNIDLEG+VCLN+LR+DW PVL
Sbjct: 112 ITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVL 171

Query: 125 NINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183
           NI T+I+GL  LF EPN +DPLN DAA+L+ D+   FE NVR +L+GGYI +  F  ++
Sbjct: 172 NIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQFPKLL 230

Accepts the ubiquitin-like protein nedd8 from the uba3-nae1 E1 complex and catalyzes its covalent attachment to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255568247	183	ubiquitin-conjugating enzyme m, putative	0.978	0.978	0.804	1e-83
115371812	183	ubiquitin-conjugating enzyme [Capsicum a	1.0	1.0	0.775	3e-82
224094692	183	predicted protein [Populus trichocarpa]	0.978	0.978	0.787	3e-82
76573335	183	RUB1-conjugating enzyme-like protein [So	1.0	1.0	0.775	8e-82
238481123	184	NEDD8-conjugating enzyme Ubc12 [Arabidop	0.978	0.972	0.788	2e-81
363807446	183	uncharacterized protein LOC100813186 [Gl	0.978	0.978	0.776	5e-81
449448408	183	PREDICTED: NEDD8-conjugating enzyme Ubc1	1.0	1.0	0.770	1e-80
359475268	183	PREDICTED: NEDD8-conjugating enzyme Ubc1	1.0	1.0	0.770	1e-80
388501480	183	unknown [Lotus japonicus] gi|388505000|g	1.0	1.0	0.754	1e-80
312281479	184	unnamed protein product [Thellungiella h	0.972	0.967	0.782	1e-80

>gi|255568247|ref|XP_002525098.1| ubiquitin-conjugating enzyme m, putative [Ricinus communis] gi|223535557|gb|EEF37225.1| ubiquitin-conjugating enzyme m, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 162/179 (90%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MIRLFKVKEKQ+E AEN  GG P+KKQ A ELRLHKDI+ELNLP++C ISFPNG+DDLMN
Sbjct: 1   MIRLFKVKEKQREQAENANGGAPIKKQTAGELRLHKDISELNLPKSCTISFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEVSI+PDEGYY  GTF+FSF+V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVSIRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
           KPVLNINTIIYGLYHLFTEPN+EDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F
Sbjct: 121 KPVLNINTIIYGLYHLFTEPNYEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGQTFF 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115371812|gb|ABI96209.1| ubiquitin-conjugating enzyme [Capsicum annuum]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 159/183 (86%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ A ELRLHKDI+ELNLP+ C ISFPNG+D+LMN
Sbjct: 1   MIKLFKVKEKQREQAENENGKPPVKKQSAGELRLHKDISELNLPKTCSISFPNGKDNLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEV+I+PDEGYY  GTF FSF + P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVTIRPDEGYYTGGTFTFSFSISPMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVLNINTIIYGLYHLFTEPNHEDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  YF 
Sbjct: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAAVLRDNPKMFESNVRRAMHGGYVGQTYFT 180

Query: 181 PVM 183
             M
Sbjct: 181 RCM 183

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094692|ref|XP_002310200.1| predicted protein [Populus trichocarpa] gi|118483300|gb|ABK93552.1| unknown [Populus trichocarpa] gi|222853103|gb|EEE90650.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 162/179 (90%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MIRLFKVKEKQ+E AEN  GG P+KKQ A ELRLHKDI+ELNLP++C ++FPNG+DDLM+
Sbjct: 1   MIRLFKVKEKQRELAENANGGVPIKKQSAGELRLHKDISELNLPKSCTMTFPNGKDDLMS 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEVSI+PDEGYY  GTF+FSF+V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVSIRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
           KPVLNINTIIYGLYHLFTEPN+EDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F
Sbjct: 121 KPVLNINTIIYGLYHLFTEPNYEDPLNHDAAAVLRDNPKMFESNVRRAMTGGYVGQSFF 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573335|gb|ABA46772.1| RUB1-conjugating enzyme-like protein [Solanum tuberosum] gi|82623385|gb|ABB87107.1| RUB1 conjugating enzyme-like [Solanum tuberosum]

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 158/183 (86%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ   ELRLHKDI+ELNLP+ C ISFPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQREQAENANGKPPVKKQSPGELRLHKDISELNLPKTCSISFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEV+I+PDEGYY  GTF FSF + PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVTIRPDEGYYMGGTFTFSFSISPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVLNINTIIYGLYHLFTEPNHEDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F 
Sbjct: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAAVLRDNPKMFESNVRRAMHGGYVGQTFFT 180

Query: 181 PVM 183
             M
Sbjct: 181 RCM 183

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481123|ref|NP_001154289.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|240256206|ref|NP_568008.4| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|297798212|ref|XP_002866990.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis lyrata subsp. lyrata] gi|75313330|sp|Q9SDY5.1|RCE1_ARATH RecName: Full=NEDD8-conjugating enzyme Ubc12; AltName: Full=RUB1 carrier protein 1; AltName: Full=RUB1-conjugating enzyme 1; AltName: Full=RUB1-protein ligase 1 gi|6635457|gb|AAF19827.1|AF202771_1 RUB1 conjugating enzyme [Arabidopsis thaliana] gi|15081636|gb|AAK82473.1| AT4g36800/C7A10_560 [Arabidopsis thaliana] gi|20453317|gb|AAM19897.1| AT4g36800/C7A10_560 [Arabidopsis thaliana] gi|297312826|gb|EFH43249.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis lyrata subsp. lyrata] gi|332661303|gb|AEE86703.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana] gi|332661304|gb|AEE86704.1| NEDD8-conjugating enzyme Ubc12 [Arabidopsis thaliana]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 160/180 (88%), Gaps = 1/180 (0%)

Query: 1   MIRLFKVKEKQKEDAENNT-GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N T GG  VKKQ A ELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRED
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED 120

Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
           WKPVLNINT+IYGL+HLFTEPN EDPLNHDAA +LRD+P  FETNVR A+ GGY+G  +F
Sbjct: 121 WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFF 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807446|ref|NP_001242389.1| uncharacterized protein LOC100813186 [Glycine max] gi|356538061|ref|XP_003537523.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Glycine max] gi|255625655|gb|ACU13172.1| unknown [Glycine max] gi|255642299|gb|ACU21414.1| unknown [Glycine max]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/179 (77%), Positives = 162/179 (90%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN +GG PVKKQ A ELRLHKDI+ELNLP++C + FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPKSCTMQFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEVSI+PD+GYY  GTF+FSF+V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVSIRPDDGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
           KPVLNINT+IYGLYHLFTEPN+EDPLNHDAA +LR++P  FE+NVR A+ GGY+G  +F
Sbjct: 121 KPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFF 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448408|ref|XP_004141958.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cucumis sativus] gi|449497703|ref|XP_004160486.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cucumis sativus]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 159/183 (86%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN + G P KKQ A ELRLHKDI+ELNLP++C I+FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQRELAENASNGVPTKKQSAGELRLHKDISELNLPKSCNITFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEVSI+PDEGYY  GTF FSF V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVSIRPDEGYYLGGTFYFSFTVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVLNINT+IYGLYHLFTEPN EDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F 
Sbjct: 121 KPVLNINTVIYGLYHLFTEPNDEDPLNHDAAAVLRDNPKLFESNVRRAMAGGYVGQTFFP 180

Query: 181 PVM 183
             M
Sbjct: 181 RCM 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475268|ref|XP_003631628.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like isoform 1 [Vitis vinifera] gi|359475270|ref|XP_003631629.1| PREDICTED: NEDD8-conjugating enzyme Ubc12-like isoform 2 [Vitis vinifera] gi|147845872|emb|CAN82178.1| hypothetical protein VITISV_034608 [Vitis vinifera] gi|297741421|emb|CBI32552.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 161/183 (87%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN  G  PVKKQ A ELRLHKDI+ELNLP+ C ISFPNG+DDLM+
Sbjct: 1   MIKLFKVKEKQREIAENANGKAPVKKQSAGELRLHKDISELNLPKTCCISFPNGKDDLMS 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEV+I+PDEGYY  GTFVFSF+V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVTIRPDEGYYLGGTFVFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVLNINTIIYGL+HLFT+PN+EDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F 
Sbjct: 121 KPVLNINTIIYGLFHLFTQPNYEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGQTFFP 180

Query: 181 PVM 183
             M
Sbjct: 181 RCM 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501480|gb|AFK38806.1| unknown [Lotus japonicus] gi|388505000|gb|AFK40566.1| unknown [Lotus japonicus]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 163/183 (89%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LFKVKEKQ+E AEN +GG PVKKQ A ELRLHKDI+ELNLP++C I+FPNG+DDLMN
Sbjct: 1   MIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPKSCTITFPNGKDDLMN 60

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           FEVSI+PD+G+Y  GTF+F+F+V PIYPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDW
Sbjct: 61  FEVSIRPDDGFYLGGTFLFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVLNINT+IYGLYHLFTEPN EDPLNH+AA +LR++P  FE+NVR A+ GGY+G  +F 
Sbjct: 121 KPVLNINTVIYGLYHLFTEPNSEDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFP 180

Query: 181 PVM 183
             M
Sbjct: 181 RCM 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281479|dbj|BAJ33605.1| unnamed protein product [Thellungiella halophila]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 160/179 (89%), Gaps = 1/179 (0%)

Query: 1   MIRLFKVKEKQKEDAEN-NTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLM 59
           MI LFKVKEKQ+E A+N N GG  VKKQ A ELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct: 1   MIGLFKVKEKQREQAQNANRGGASVKKQSAGELRLHKDISELNLPSSCAISFPNGKDDLM 60

Query: 60  NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRED
Sbjct: 61  NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED 120

Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
           WKPVLNINT+IYGL+HLFTEPN EDPLNH+AA++LRD+P  FETNVR A+ GGY+G  +
Sbjct: 121 WKPVLNINTVIYGLFHLFTEPNSEDPLNHEAAQVLRDNPKLFETNVRRAMTGGYVGQTF 179

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2115305	184	RCE1 "RUB1 conjugating enzyme	0.978	0.972	0.788	1.4e-78
TAIR|locus:2046303	185	AT2G18600 "AT2G18600" [Arabido	1.0	0.989	0.729	1.7e-73
UNIPROTKB|Q6DCZ9	183	ube2m "NEDD8-conjugating enzym	0.967	0.967	0.620	5.1e-58
UNIPROTKB|A3KN22	183	UBE2M "NEDD8-conjugating enzym	0.967	0.967	0.620	1.1e-57
UNIPROTKB|P61081	183	UBE2M "NEDD8-conjugating enzym	0.967	0.967	0.620	1.1e-57
MGI|MGI:108278	183	Ube2m "ubiquitin-conjugating e	0.967	0.967	0.620	1.1e-57
RGD|1307614	183	Ube2m "ubiquitin-conjugating e	0.967	0.967	0.620	1.1e-57
UNIPROTKB|Q6P8D9	183	ube2m "NEDD8-conjugating enzym	0.967	0.967	0.615	1.7e-57
UNIPROTKB|E2RIU5	185	UBE2M "Uncharacterized protein	0.967	0.956	0.614	1.6e-56
FB|FBgn0035853	181	Ubc12 "Ubiquitin conjugating e	0.961	0.972	0.577	2.6e-54

TAIR|locus:2115305 RCE1 "RUB1 conjugating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 142/180 (78%), Positives = 160/180 (88%)

Query:     1 MIRLFKVKEKQKEDAENNT-GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLM 59
             MI LFKVKEKQ+E A+N T GG  VKKQ A ELRLHKDI+ELNLP +C ISFPNG+DDLM
Sbjct:     1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLM 60

Query:    60 NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
             NFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRED
Sbjct:    61 NFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED 120

Query:   120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYF 179
             WKPVLNINT+IYGL+HLFTEPN EDPLNHDAA +LRD+P  FETNVR A+ GGY+G  +F
Sbjct:   121 WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFF 180

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019787 "small conjugating protein ligase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IGI

GO:0019788 "NEDD8 ligase activity" evidence=TAS

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2046303 AT2G18600 "AT2G18600" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 135/185 (72%), Positives = 160/185 (86%)

Query:     1 MIRLFKVKEKQKEDAENNTG--GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI LFKVKEKQ+E++++N G   + VKKQ A ELRLHKDI+ELNLP++CKISFPNG++DL
Sbjct:     1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDL 60

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             MNFEV+IKPDEGYY +G FVFSF+V  +YPH+APKVKCKTKVYHPNIDLEGNVCLN+LRE
Sbjct:    61 MNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE 120

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVLNINT+IYGL+HLFTEPN+EDPLNH+AA +LRD+P  FE NVR A+ GG +G   
Sbjct:   121 DWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTS 180

Query:   179 FEPVM 183
             F   M
Sbjct:   181 FPRCM 185

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019787 "small conjugating protein ligase activity" evidence=ISS

GO:0006301 "postreplication repair" evidence=RCA

UNIPROTKB|Q6DCZ9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus laevis (taxid:8355)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 113/182 (62%), Positives = 143/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDITELNLP+ C+I F +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

UNIPROTKB|A3KN22 UBE2M "NEDD8-conjugating enzyme Ubc12" [Bos taurus (taxid:9913)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/182 (62%), Positives = 143/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P61081 UBE2M "NEDD8-conjugating enzyme Ubc12" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/182 (62%), Positives = 143/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0005524 "ATP binding" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP;TAS

GO:0006464 "cellular protein modification process" evidence=IMP;TAS

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0016567 "protein ubiquitination" evidence=IMP;TAS

MGI|MGI:108278 Ube2m "ubiquitin-conjugating enzyme E2M" [Mus musculus (taxid:10090)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/182 (62%), Positives = 143/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISO

GO:0019788 "NEDD8 ligase activity" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

RGD|1307614 Ube2m "ubiquitin-conjugating enzyme E2M" [Rattus norvegicus (taxid:10116)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/182 (62%), Positives = 143/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA;ISO

GO:0019788 "NEDD8 ligase activity" evidence=IEA;ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IMP

GO:0045116 "protein neddylation" evidence=ISO

UNIPROTKB|Q6P8D9 ube2m "NEDD8-conjugating enzyme Ubc12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 112/182 (61%), Positives = 142/182 (78%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKDITELNLPEACKISFPNGQDDL 58
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C+I F +  DDL
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDL 57

Query:    59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE 118
             +NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LRE
Sbjct:    58 LNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 117

Query:   119 DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178
             DWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  Y
Sbjct:   118 DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTY 177

Query:   179 FE 180
             FE
Sbjct:   178 FE 179

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=ISS

GO:0019788 "NEDD8 ligase activity" evidence=ISS

GO:0045116 "protein neddylation" evidence=ISS

UNIPROTKB|E2RIU5 UBE2M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 113/184 (61%), Positives = 143/184 (77%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTP--VKKQCARELRLHKD--ITELNLPEACKISFPNGQD 56
             MI+LF +K+++KE  E + GGT    KK  A +LR+ KD  I ELNLP+ C ISF +  D
Sbjct:     1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDPDINELNLPKTCDISFSD-PD 57

Query:    57 DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL 116
             DL+NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+L
Sbjct:    58 DLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL 117

Query:   117 REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176
             REDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG 
Sbjct:   118 REDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGS 177

Query:   177 EYFE 180
              YFE
Sbjct:   178 TYFE 181

GO:0019788 "NEDD8 ligase activity" evidence=IEA

GO:0018169 "ribosomal S6-glutamic acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

FB|FBgn0035853 Ubc12 "Ubiquitin conjugating enzyme 12" [Drosophila melanogaster (taxid:7227)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 104/180 (57%), Positives = 136/180 (75%)

Query:     1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
             MI+LF +K+ QK+D E    G+  KK  A +LR+ KDI ELNLP  C   FP+  +DL+N
Sbjct:     1 MIKLFTLKQ-QKKDGEQK--GSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLN 56

Query:    61 FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
             F++ I PDEG+Y++G FVF+F V   YPH+ PKVKC T+VYHPNIDL+GNVCLN+LREDW
Sbjct:    57 FKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDW 116

Query:   121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
              PVLNIN+I+YGL  LF EPN EDPLN +AA++L+ +   FE NV+ A++GG +G+ YFE
Sbjct:   117 NPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFE 176

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0045116 "protein neddylation" evidence=IDA

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSF3	UBC12_DROME	6, ., 3, ., 2, ., -	0.5777	0.9617	0.9723	yes	no
Q9ZU75	UB12L_ARATH	6, ., 3, ., 2, ., -	0.7297	1.0	0.9891	no	no
Q6DCZ9	UBC12_XENLA	6, ., 3, ., 2, ., -	0.6108	0.9836	0.9836	N/A	no
Q75AF2	UBC12_ASHGO	6, ., 3, ., 2, ., -	0.4313	0.8196	0.8152	yes	no
Q9SDY5	RCE1_ARATH	6, ., 3, ., 2, ., -	0.7888	0.9781	0.9728	yes	no
P52491	UBC12_YEAST	6, ., 3, ., 2, ., -	0.4245	0.9398	0.9148	yes	no
Q6FVQ8	UBC12_CANGA	6, ., 3, ., 2, ., -	0.4615	0.8251	0.8074	yes	no
P61082	UBC12_MOUSE	6, ., 3, ., 2, ., -	0.6108	0.9836	0.9836	yes	no
P61081	UBC12_HUMAN	6, ., 3, ., 2, ., -	0.6108	0.9836	0.9836	yes	no
Q6P8D9	UBC12_XENTR	6, ., 3, ., 2, ., -	0.6054	0.9836	0.9836	yes	no
O74549	UBC12_SCHPO	6, ., 3, ., 2, ., -	0.4480	0.9617	0.9943	yes	no
Q6CSW8	UBC12_KLULA	6, ., 3, ., 2, ., -	0.4342	0.8306	0.8260	yes	no
Q6C9W0	UBC12_YARLI	6, ., 3, ., 2, ., -	0.5136	0.9672	0.9888	yes	no
A3KN22	UBC12_BOVIN	6, ., 3, ., 2, ., -	0.6108	0.9836	0.9836	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-47
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	5e-44
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-36
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	3e-33
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-22
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	9e-19

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  151 bits (384), Expect = 1e-47
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 33  RLHKDITEL-NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           RL K++ EL   P     +FP   D+L  +EV+I  P+   Y+ G F    E P  YP  
Sbjct: 1   RLQKELKELLKDPPPGISAFPVD-DNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFK 59

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
            PKVK  TK+YHPN+D  G +CL++L+ E+W P L I  ++  +  L +EPN EDPLN +
Sbjct: 60  PPKVKFTTKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAE 119

Query: 150 AAELLRDSPACFETNVR 166
           AA+L R +   FE  VR
Sbjct: 120 AAKLYRKNREEFEKKVR 136

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  143 bits (362), Expect = 5e-44
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ +L  + P       P   D+L ++E +I  P +  Y+ G F  + E P  YP 
Sbjct: 9   RLLKELKKLQKDPPPGISA-GPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPF 67

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV+  TK++HPN+D  GNVCL++L++ W PV  + TI+  L  L   PN + PLN +
Sbjct: 68  KPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTE 127

Query: 150 AAELLRDSPACFETNVRM 167
           AA L R+    +E  VR 
Sbjct: 128 AATLYREDKEEYEKKVRE 145

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  123 bits (310), Expect = 2e-36
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 33  RLHKDITELNLPEACKISF-PNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHD 90
           RL K++ +L       IS  P   ++L+ +  +I+      Y+ G F    E P  YP  
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVE-ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFK 61

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLRED-WKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
            PKV+  TK+YHPN+D  G +CL++L+   W P   + T++  L  L  EPN  DPLN +
Sbjct: 62  PPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAE 121

Query: 150 AAELLRDSPACFETNVR 166
           AA+L +++   F+   R
Sbjct: 122 AAKLYKENREEFKKKAR 138

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  115 bits (289), Expect = 3e-33
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ EL  + P     ++P   ++L+ +  +I  P    Y+ G F  + E P  YP 
Sbjct: 1   RLLKELKELRKDPPPGFT-AYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPF 59

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNH 148
             PKVK  TK+YHPN+D  G +CL++L+ E W P L + T++  L  L +EPN + PLN 
Sbjct: 60  KPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNA 119

Query: 149 DAAELLRDSPACFETNVR 166
           DAAEL + +   F+   R
Sbjct: 120 DAAELYKKNREEFKKKAR 137

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 87.5 bits (216), Expect = 2e-22
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+  +L  + P  C    P+  ++L  +  SI  P +  Y  G F  S   PP YP 
Sbjct: 5   RIQKEHKDLLKDPPSNCSAG-PSD-ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPF 62

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV+  TK+YHPNI+  G++CL++LR+ W P L ++ ++  +  L T+PN +DPL  +
Sbjct: 63  KPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPE 122

Query: 150 AAELLRDSPACFETNVR 166
            A + +++ + +E   R
Sbjct: 123 IARVFKENRSRYEATAR 139

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 78.3 bits (193), Expect = 9e-19
 Identities = 36/100 (36%), Positives = 57/100 (57%)

Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNI 126
           PD   Y+ G +     +P  YP + PKV+  TK+YHPNID  G +CL++L++ W P L I
Sbjct: 41  PDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 100

Query: 127 NTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
            T++  +  L + P  +DPL+   A+  +++ A  E   R
Sbjct: 101 RTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAR 140

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.95
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.94
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.9
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.84
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.57
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.5
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.43
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.68
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.59
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.33
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.25
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.58
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.45
smart00591	107	RWD domain in RING finger and WD repeat containing	95.84
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	95.68
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.08
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	94.15
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	84.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	81.31

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-50  Score=302.90  Aligned_cols=144  Identities=36%  Similarity=0.697  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.+||++|++.+  +.++++++. +..++|+++|++.| ||.+||||||+|++.|.||++||++||+|+|.++|||||||
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~   84 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD   84 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence            899999999999  445677775 66345999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      .+|.||+++|+++|+|++++++||.+|+++|.+||.++|+|.|||++|++|+++|.++||+++++++.
T Consensus        85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998864

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-49  Score=295.06  Aligned_cols=143  Identities=34%  Similarity=0.716  Sum_probs=136.9

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.+||.+|++++  ++++++.+. ++ .+|+++|+++| ||.+||||||+|.+.|.||++||++||+|+|.|+||||||+
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~   79 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID   79 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence            356999999999  677888886 66 89999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      .+|.||+|+|++.|+|+++|..||.+|+++|.+|++++|++.|+|.+|+.|+.+|++.||+|+.+++.
T Consensus        80 ~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   80 SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999874

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-47  Score=276.00  Aligned_cols=148  Identities=26%  Similarity=0.628  Sum_probs=140.5

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      |+..|.+||++|++++  +++.|++.. |. ++|++.|.+.| ||.+|||+||+|++.|.|+++||.+||.|+|.+.+||
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH   78 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH   78 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence            4568899999999999  567777765 77 89999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      ||||.+|.+|+|+|.-.|+|.|++.+||.+||+||.+|++++|+|.|||++|.+|+.+|.+++++.+.|.+..
T Consensus        79 PNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~  151 (152)
T KOG0419|consen   79 PNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSD  151 (152)
T ss_pred             CCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988754

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=9.4e-47  Score=287.14  Aligned_cols=147  Identities=30%  Similarity=0.600  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV   79 (152)
T PTZ00390          2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI   79 (152)
T ss_pred             cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence            3579999999999  456777764 55 78999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112          106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE  177 (183)
Q Consensus       106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~  177 (183)
                      +.+|.||+++|.+.|+|++|+.+||.+|+++|.+|++++|+|.|||++|++|+++|+++||+|+.+++.++.
T Consensus        80 ~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~~  151 (152)
T PTZ00390         80 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHNK  151 (152)
T ss_pred             CCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999987654

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.1e-45  Score=279.89  Aligned_cols=142  Identities=33%  Similarity=0.733  Sum_probs=134.3

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~   79 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN   79 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence            468999999999  456677665 55 68999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      .+|.||++++.+.|+|++|+++||.+|+++|.+|++++|+|.|||++|.+|+++|.++||+|+.+++
T Consensus        80 ~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         80 SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999998775

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-45  Score=276.47  Aligned_cols=182  Identities=60%  Similarity=1.072  Sum_probs=170.6

Q ss_pred             CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceE--EEEEEeCCCCCCCCcEEE
Q 030112            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN--FEVSIKPDEGYYQNGTFV   78 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~--w~~~igp~~tpyegg~f~   78 (183)
                      |+.+|+++++++++.++.++ |+..+.+.++.||++|..+++.++++.+.++...++++.  ++++|.|.++.|+||.|.
T Consensus         1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~   79 (184)
T KOG0420|consen    1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR   79 (184)
T ss_pred             CccHHHHHHhhhhhcccccc-cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence            88999999988877775533 667789999999999999999999999888886677666  888999999999999999


Q ss_pred             EEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCH
Q 030112           79 FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSP  158 (183)
Q Consensus        79 ~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~  158 (183)
                      |.+.+|+.||++||+|.++|+|||||||.+|.||+++|+++|+|+.++.+|+.+|+.+|.+|+++||+|.|||..+++|+
T Consensus        80 F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~  159 (184)
T KOG0420|consen   80 FKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR  159 (184)
T ss_pred             EEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCC
Q 030112          159 ACFETNVRMALQGGYIGDEYFEPVM  183 (183)
Q Consensus       159 ~~f~~~~r~~~~~~~~~~~~~~~~~  183 (183)
                      +.|+.+||+.+.+|+++...|+.+|
T Consensus       160 e~F~~~Vr~~m~gg~v~~~~f~~~~  184 (184)
T KOG0420|consen  160 EGFENNVRRAMSGGCVGQTSFDRCM  184 (184)
T ss_pred             HHHHHHHHHHHhcCccCceeccccC
Confidence            9999999999999999999999876

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-43  Score=260.62  Aligned_cols=144  Identities=31%  Similarity=0.637  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++...|+++|++|  ++.+++.+.+.+ .+|+++|.|.| ||++|+||||.|+..+.||.+||++||+++|.++||||||
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv   83 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV   83 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence            3678899999999  556788887666 78999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112          106 DLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGG  172 (183)
Q Consensus       106 ~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~  172 (183)
                      |++|.||+++|.             +.|.|.+|+++||++|.+||.+||.++|+|-|||+.|++|+++|.++|++|+.+.
T Consensus        84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s  163 (171)
T KOG0425|consen   84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS  163 (171)
T ss_pred             CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            999999999994             4699999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q 030112          173 Y  173 (183)
Q Consensus       173 ~  173 (183)
                      .
T Consensus       164 ~  164 (171)
T KOG0425|consen  164 Q  164 (171)
T ss_pred             H
Confidence            5

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-42  Score=247.17  Aligned_cols=144  Identities=28%  Similarity=0.585  Sum_probs=136.7

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ...|++||++||++|  +.++|+... |.+++|+++|.+.| ||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP   80 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP   80 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence            457899999999999  778888775 88799999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHh
Q 030112          104 NIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQ  170 (183)
Q Consensus       104 nV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~  170 (183)
                      ||+++|+||+++|.             +.|+|..+++.||.++.+||.+||-++.+|.+|+.++++|+++|.+.||..+.
T Consensus        81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr  160 (165)
T KOG0426|consen   81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR  160 (165)
T ss_pred             cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999994             57999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q 030112          171 G  171 (183)
Q Consensus       171 ~  171 (183)
                      +
T Consensus       161 K  161 (165)
T KOG0426|consen  161 K  161 (165)
T ss_pred             H
Confidence            6

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-41  Score=249.39  Aligned_cols=147  Identities=28%  Similarity=0.518  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      ++.+..||+.|-+.+  +++-|+.+. |.    +..|+..|++.| |+.+|+||||.|.+++.||++||.+||++.|.++
T Consensus         2 s~~~~~rl~eErk~wrk~hp~gf~Ak-P~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    2 SGIALNRLAEERKKWRKDHPFGFYAK-PVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             cchHHHHHHHHHHHHhhcCCCceeee-ccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            556799999999999  667776653 43    245799999999 9999999999999999999999999999999999


Q ss_pred             ccccCccCCCceecccccCc--ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          100 VYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       100 i~HpnV~~~G~vcl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      +||||||++|.||+++|.++  |+|+.||.+||.+||.||.+||+.+|+|.||..+|.+|+.+|.++||.++++++.
T Consensus        81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999765  9999999999999999999999999999999999999999999999999988764

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=3.1e-41  Score=253.55  Aligned_cols=136  Identities=39%  Similarity=0.762  Sum_probs=123.0

Q ss_pred             HHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCC
Q 030112           33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEG  109 (183)
Q Consensus        33 RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G  109 (183)
                      ||++|++++  +.+.++.+.... .+|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G   79 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG   79 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred             CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence            899999999  678888887443 45999999999 99999999999999999999999999999999999999999999


Q ss_pred             ceecccccC-cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112          110 NVCLNVLRE-DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL  169 (183)
Q Consensus       110 ~vcl~~l~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~  169 (183)
                      .||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.||+++|++|+++|.++||+|.
T Consensus        80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            999999985 499999999999999999999999999999999999999999999999983

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=2e-40  Score=249.52  Aligned_cols=136  Identities=35%  Similarity=0.730  Sum_probs=127.7

Q ss_pred             HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCC
Q 030112           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE  108 (183)
Q Consensus        32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~  108 (183)
                      +||++|++++  +.++++.+. +. ++|+++|+++| |+++|||+||.|+++|.||++||++||.|+|.++++||||+.+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~   79 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDEN   79 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCC
Confidence            7999999999  445676664 55 67999999999 9999999999999999999999999999999999999999999


Q ss_pred             CceecccccCc-ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112          109 GNVCLNVLRED-WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL  169 (183)
Q Consensus       109 G~vcl~~l~~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~  169 (183)
                      |.||++++..+ |+|++++++||.+|+++|.+|+.++|+|.|||.+|++|+++|+++|++|+
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          80 GKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            99999999877 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-40  Score=251.15  Aligned_cols=145  Identities=26%  Similarity=0.486  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhhcCC-----CCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           30 RELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        30 ~~~RL~~E~~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      +.+||++|.+++..     ..++.+.  ..++|+.+..+.| ||++||||||+|.++|++|++|||+||+|+|.|+||||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve--~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHP   81 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVE--MVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHP   81 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEE--EccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecC
Confidence            78999999999932     3455554  2358999999999 99999999999999999999999999999999999999


Q ss_pred             CccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          104 NIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       104 nV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      ||++ +|.||+|++.+.|.+++|+..+|.+||++|+.|++.+|.+..+|++|.+|++.|.+.||.|+..++.+.
T Consensus        82 nVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~  155 (200)
T KOG0418|consen   82 NVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR  155 (200)
T ss_pred             CCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence            9998 999999999999999999999999999999999999999999999999999999999999999888763

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-40  Score=240.58  Aligned_cols=145  Identities=30%  Similarity=0.606  Sum_probs=136.6

Q ss_pred             CCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112           24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i  100 (183)
                      .....+..+||++|+..|  ...+|++. +|+ ++|++.|.++| ||++|+|+|-.|++.+.||.+||++||.|.|+|++
T Consensus        24 v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc  101 (175)
T KOG0421|consen   24 VVDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPC  101 (175)
T ss_pred             cccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccc
Confidence            334678899999999999  56788887 688 78999999999 99999999999999999999999999999999999


Q ss_pred             cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112          101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG  171 (183)
Q Consensus       101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  171 (183)
                      ||||||..|.||+|+|.+.|+..|+++.||.+||++|-+||.++|+|..||+++. |+++|++.+..++.+
T Consensus       102 ~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  102 FHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             cCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999998 999999999887765

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.9e-39  Score=245.21  Aligned_cols=141  Identities=36%  Similarity=0.715  Sum_probs=131.2

Q ss_pred             HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCC
Q 030112           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE  108 (183)
Q Consensus        32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~  108 (183)
                      +||++|++++  +.++++.+ .+..++|+++|+++| ||.+|||+||.|+++|.||++||++||+|+|.+++|||||+++
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v-~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~   79 (145)
T smart00212        1 KRLLKELKELLKDPPPGISA-YPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS   79 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEE-EECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence            5999999999  45566665 355345999999999 9999999999999999999999999999999999999999999


Q ss_pred             Cceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       109 G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.||+++|.+|++.|+++|++++.++.
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999998 89999999999999999999999999999999999999999999999999998763

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-37  Score=223.76  Aligned_cols=147  Identities=31%  Similarity=0.562  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHhhcC--CCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           29 ARELRLHKDITELN--LPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        29 ~~~~RL~~E~~~l~--~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      .+.+||++|+.+|.  ....+. .+...+.|++.|++.|.|.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~~r-n~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD   80 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKFFR-NIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD   80 (153)
T ss_pred             chhHHHHHHHHHHHhccHHHHh-hhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence            46899999999993  233222 133446899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          107 LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       107 ~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      +.|.+|+.++. ++|.|+.+.++||+.|..++.+|+++.|++.|+|..|.+|+..|.++|-++++++...-
T Consensus        81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r  151 (153)
T KOG0422|consen   81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR  151 (153)
T ss_pred             CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence            99999999985 78999999999999999999999999999999999999999999999999999987643

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-36  Score=228.68  Aligned_cols=146  Identities=29%  Similarity=0.575  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      ++..|||-.|...|- .++..+++.  .+++.+++|.+ ||.+|||+||++++++.+|++||++.|.|.|.++||||||+
T Consensus         2 s~~~rRid~Dv~KL~-~s~yeV~~i--nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID   78 (189)
T KOG0416|consen    2 SSGKRRIDTDVMKLL-MSDYEVTII--NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID   78 (189)
T ss_pred             CCcccchhhHHHHHH-hcCCeEEEe--cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence            345689999999983 234455532  46799999999 99999999999999999999999999999999999999999


Q ss_pred             C-CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          107 L-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       107 ~-~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      . +|.||++.+++.|+|.+.+..|+.. |-.+|..||+.+|+|.|||.+|.++++.|.+++|+++++|+...
T Consensus        79 e~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~  150 (189)
T KOG0416|consen   79 EASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE  150 (189)
T ss_pred             hccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence            9 9999999999999999999999975 57899999999999999999999999999999999999999655

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.5e-32  Score=207.07  Aligned_cols=148  Identities=28%  Similarity=0.530  Sum_probs=135.9

Q ss_pred             CCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112           24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i  100 (183)
                      .+-.....+.+.+|++.+  .+|.|+.+. +. ++|+....+.| ||.||||++|.|++.+.+..|||.+||+-+|+|+|
T Consensus         5 enlpp~vik~~~kEl~~l~~~PPdGIKV~-~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKI   82 (223)
T KOG0423|consen    5 ENLPPNVIKQLAKELKSLDESPPDGIKVV-VN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKI   82 (223)
T ss_pred             cCCChHHHHHHHHHHHhcccCCCCceEEe-cC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeee
Confidence            344566788999999999  566777774 44 78999999999 99999999999999999999999999999999999


Q ss_pred             cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |||||-.+|.||..+|..+|.|..+|..||..|.++|..|++++.+|++|.+++.++.++|.++||-++.=.+
T Consensus        83 FHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa  155 (223)
T KOG0423|consen   83 FHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHA  155 (223)
T ss_pred             ccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765433

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.3e-28  Score=175.99  Aligned_cols=118  Identities=24%  Similarity=0.535  Sum_probs=105.3

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc-cc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK-VY  101 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-i~  101 (183)
                      .+..|.+||++|+.++  ++|+|....  . .+|+..|.+.+ |.+||.|+|.+|.+.++||+.||+..|.|.|..+ ..
T Consensus        12 ls~~at~RLqKEl~e~q~~pP~G~~~~--v-~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~   88 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNNPPTGFKHR--V-TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL   88 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceee--c-ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence            4778899999999999  455666554  3 78999999999 9999999999999999999999999999999977 56


Q ss_pred             ccCccCCCceecccccCcccCCccHHhHHHHHHHhhcC-CCCCCCc
Q 030112          102 HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE-PNHEDPL  146 (183)
Q Consensus       102 HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~  146 (183)
                      |||||.||.||+++|.++|+|++++.+|..+|.+||++ .....|.
T Consensus        89 HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~  134 (161)
T KOG0427|consen   89 HPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT  134 (161)
T ss_pred             CCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence            99999999999999999999999999999999999997 3444444

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.8e-27  Score=181.24  Aligned_cols=114  Identities=25%  Similarity=0.501  Sum_probs=98.8

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc--c
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK--V  100 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i  100 (183)
                      .+.++.+||++||+.|  ++.+++.+. |. ++||.+||.++ ||++|||+||.|+.+|.||++||++||.|+++||  .
T Consensus         2 a~k~a~kRl~keY~~l~k~Pv~~i~A~-P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR   79 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCKDPVPYIVAR-PN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR   79 (244)
T ss_pred             cchHHHHHHHHHHHHHHhCCchhhccC-CC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence            3567899999999999  566777664 76 89999999999 9999999999999999999999999999999987  4


Q ss_pred             cccCccCCCceeccccc---CcccCCccHHhHHHHHHHhhcC--CCCCCC
Q 030112          101 YHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTE--PNHEDP  145 (183)
Q Consensus       101 ~HpnV~~~G~vcl~~l~---~~W~p~~~i~~iL~~i~~ll~~--p~~~~p  145 (183)
                      |-+|    -++|+++-+   +.|.|+|++..||.+|.++|.+  |...+.
T Consensus        80 Fktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI  125 (244)
T KOG0894|consen   80 FKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI  125 (244)
T ss_pred             eecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence            4444    489998874   7899999999999999999886  555443

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.1e-23  Score=162.21  Aligned_cols=140  Identities=22%  Similarity=0.380  Sum_probs=124.0

Q ss_pred             HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCC--CCCceeEeccccccCcc
Q 030112           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPH--DAPKVKCKTKVYHPNID  106 (183)
Q Consensus        31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~  106 (183)
                      ...|..||..+  ++.+|+++ .|. ..|-+.|-++|....+.|.||+|+|+|.+|++||.  +.|+|.|.+.+|||+|.
T Consensus        21 ey~llAEf~lV~~ekL~gIyv-iPS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic   98 (258)
T KOG0429|consen   21 EYALLAEFVLVCREKLDGIYV-IPS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC   98 (258)
T ss_pred             HHHHHHHHHHHHhccCCceEE-ccc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence            34566666666  67889888 488 78889999999778889999999999999999996  68999999999999999


Q ss_pred             C-CCceecccccCcccCC-ccHHhHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112          107 L-EGNVCLNVLREDWKPV-LNINTIIYGLYHLFTEPNHEDP--LNHDAAELLRDSPACFETNVRMALQGG  172 (183)
Q Consensus       107 ~-~G~vcl~~l~~~W~p~-~~i~~iL~~i~~ll~~p~~~~p--~n~eaa~~~~~~~~~f~~~~r~~~~~~  172 (183)
                      + ++.+|+......|... ..|+++|..+|.+|.+|+...+  .|+||+.+|.+++++|.++|++|+..+
T Consensus        99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s  168 (258)
T KOG0429|consen   99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS  168 (258)
T ss_pred             CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9 8999999887779665 7899999999999999987776  499999999999999999999998754

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-20  Score=149.86  Aligned_cols=110  Identities=23%  Similarity=0.449  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           27 QCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      -+++.+||++|.++++.|...+...|. ++|+++|+++| ||.+|-||||+|+.+|.||.+||++||.+-.+|+-  .-+
T Consensus         9 KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRF   85 (314)
T KOG0428|consen    9 KNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRF   85 (314)
T ss_pred             cCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cce
Confidence            467899999999999766665566677 89999999999 99999999999999999999999999999988862  112


Q ss_pred             cCCCceeccccc---CcccCCccHHhHHHHHHHhhcC
Q 030112          106 DLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTE  139 (183)
Q Consensus       106 ~~~G~vcl~~l~---~~W~p~~~i~~iL~~i~~ll~~  139 (183)
                      --+.+||+++-.   +.|.|+|+|..-|..|..+|-.
T Consensus        86 E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt  122 (314)
T KOG0428|consen   86 EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT  122 (314)
T ss_pred             eeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence            225689999884   7899999999999999887764

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3e-15  Score=138.78  Aligned_cols=109  Identities=26%  Similarity=0.482  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc--cccc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK--VYHP  103 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hp  103 (183)
                      ..++..+.|++-+  ..+.++.+..  .++-+....+.| |+.+|||..|.|.|.|.||++||.+||.+...+.  .++|
T Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~vr~--~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np  928 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPLSLPSGIFVRA--YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP  928 (1101)
T ss_pred             HHHHHHHHHHHhhhccCCCceEEEe--chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence            6677778888887  5567777653  356666688889 9999999999999999999999999999999976  7899


Q ss_pred             CccCCCceeccccc-------CcccCCccHHhHHHHHHHhhcC
Q 030112          104 NIDLEGNVCLNVLR-------EDWKPVLNINTIIYGLYHLFTE  139 (183)
Q Consensus       104 nV~~~G~vcl~~l~-------~~W~p~~~i~~iL~~i~~ll~~  139 (183)
                      |.|.+|+||+++|+       +-|+|+-+|.++|.+||.++.+
T Consensus       929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            99999999999995       5699999999999999998764

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.2e-13  Score=128.34  Aligned_cols=118  Identities=27%  Similarity=0.528  Sum_probs=104.2

Q ss_pred             CCCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeE
Q 030112           20 GGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKC   96 (183)
Q Consensus        20 ~~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f   96 (183)
                      +.+....+....+|+++|++-+  +.++++.+. +. +.......+.| |+.+|||++|+|.|.|.||..||..||.+.+
T Consensus       273 ~~~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~  350 (1101)
T KOG0895|consen  273 GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKY  350 (1101)
T ss_pred             CCCCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEE
Confidence            4455567888899999999999  667776664 66 67888899999 9999999999999999999999999999999


Q ss_pred             ecc---ccccCccCCCceeccccc-------CcccCC-ccHHhHHHHHHHhhcC
Q 030112           97 KTK---VYHPNIDLEGNVCLNVLR-------EDWKPV-LNINTIIYGLYHLFTE  139 (183)
Q Consensus        97 ~t~---i~HpnV~~~G~vcl~~l~-------~~W~p~-~~i~~iL~~i~~ll~~  139 (183)
                      .+.   .+.||.|.+|+||+++|.       +.|+|. .++.++|..||.++.+
T Consensus       351 lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  351 LTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             eeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            977   789999999999999883       679999 8999999999998875

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=6.1e-13  Score=97.17  Aligned_cols=108  Identities=21%  Similarity=0.386  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhcCC---CCCceEeccCCCCCc--eEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           30 RELRLHKDITELNL---PEACKISFPNGQDDL--MNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        30 ~~~RL~~E~~~l~~---~~~~~~~~~~~~~n~--~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ...||.+|+..-++   +..+++.+.+ .+|+  ..|...| ||+.|+||+.+|.++|.+.++||..||.|+|.+++--.
T Consensus         6 rnfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    6 RNFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             cchhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            34678888877632   3344555555 4554  5899999 99999999999999999999999999999999999999


Q ss_pred             CccC-CCceecccc--cCcccCCccHHhHHHHHHHhhc
Q 030112          104 NIDL-EGNVCLNVL--REDWKPVLNINTIIYGLYHLFT  138 (183)
Q Consensus       104 nV~~-~G~vcl~~l--~~~W~p~~~i~~iL~~i~~ll~  138 (183)
                      .|+. +|.|.-..+  -.+|.-.|+++.+|..+..++.
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence            9988 777765433  3789999999999999975443

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.5e-08  Score=69.38  Aligned_cols=96  Identities=14%  Similarity=0.308  Sum_probs=70.8

Q ss_pred             EEEEEEeCCCCCCCCCceeEeccc-cccCccCCCceeccccc-CcccCCccHHhHHHHHHHhhcCCC--CCCCccHHHHH
Q 030112           77 FVFSFEVPPIYPHDAPKVKCKTKV-YHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPN--HEDPLNHDAAE  152 (183)
Q Consensus        77 f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~--~~~p~n~eaa~  152 (183)
                      .-+.+.|+++||+.||.++...|. --.-|-.+|.||+.++. ++|+.+++++.++++|-.++....  ...+++.+-. 
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-   91 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-   91 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence            456688999999999999877553 23334458999999995 789999999999999999999864  4455544433 


Q ss_pred             HHHh--CHHHHHHHHHHHHhcCC
Q 030112          153 LLRD--SPACFETNVRMALQGGY  173 (183)
Q Consensus       153 ~~~~--~~~~f~~~~r~~~~~~~  173 (183)
                      +|..  -.+.|+..++-.-+-++
T Consensus        92 ~~s~~qa~~sfksLv~~heksg~  114 (122)
T KOG0897|consen   92 LYSHSQAQQSFKSLVQIHEKSGW  114 (122)
T ss_pred             HhhHHHHHHHHHHHHHHHHhcCC
Confidence            5544  44667777776655554

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.59  E-value=1.9e-07  Score=69.52  Aligned_cols=67  Identities=21%  Similarity=0.482  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEeCCCCCCCCCceeEeccc---cccCccCCCceec---ccccCcccCCccHHhHHHHHHHhhcC
Q 030112           73 QNGTFVFSFEVPPIYPHDAPKVKCKTKV---YHPNIDLEGNVCL---NVLREDWKPVLNINTIIYGLYHLFTE  139 (183)
Q Consensus        73 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~vcl---~~l~~~W~p~~~i~~iL~~i~~ll~~  139 (183)
                      .|+.+.+.|.||++||..||.|....+.   +=|||+.+|.+|+   ....+.|.|.-.+.++|.....+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998654   6899999999999   67778899999999999999998885

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.33  E-value=7.8e-07  Score=65.27  Aligned_cols=79  Identities=25%  Similarity=0.441  Sum_probs=53.7

Q ss_pred             CceEEEEEEeCCCCCCCCcEE--EEEEEeCCCCCCCCCceeEecccc-----ccCccCCCceecccccCcccC-CccHHh
Q 030112           57 DLMNFEVSIKPDEGYYQNGTF--VFSFEVPPIYPHDAPKVKCKTKVY-----HPNIDLEGNVCLNVLREDWKP-VLNINT  128 (183)
Q Consensus        57 n~~~w~~~igp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i~-----HpnV~~~G~vcl~~l~~~W~p-~~~i~~  128 (183)
                      .+....++|   --.|.|..|  .+.|.+|.+||..||.+.......     +.+||.+|+|.+..+ ++|.+ ..++.+
T Consensus        31 ~LL~L~Gti---pi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~  106 (121)
T PF05743_consen   31 LLLCLYGTI---PITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD  106 (121)
T ss_dssp             EEEEEEEEE---EECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred             eEEEEecCc---ccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence            455666666   123556555  677889999999999998874422     449999999998888 46766 889999


Q ss_pred             HHHHHHHhhcC
Q 030112          129 IIYGLYHLFTE  139 (183)
Q Consensus       129 iL~~i~~ll~~  139 (183)
                      ++..+...|.+
T Consensus       107 lv~~l~~~F~~  117 (121)
T PF05743_consen  107 LVQELQAVFSE  117 (121)
T ss_dssp             HHHHHHHCCCH
T ss_pred             HHHHHHHHHhH
Confidence            99999887764

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.25  E-value=2.3e-06  Score=63.50  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             CCCCcchHHHHHHHHHHhhc------CC-CCCceEeccCCCCCceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112           22 TPVKKQCARELRLHKDITEL------NL-PEACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l------~~-~~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP   92 (183)
                      .+++.......||..||..|      ++ ...-.+.+.. ..+-+.|.+.+  ....--||   |.+++.+|..||..||
T Consensus        17 AGPrd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~kYE---F~~eFdIP~tYP~t~p   92 (161)
T PF08694_consen   17 AGPRDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLKYE---FDLEFDIPVTYPTTAP   92 (161)
T ss_dssp             --TTSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEEEE---EEEEEE--TTTTTS--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeeeEE---EeeecCCCccCCCCCc
Confidence            34556688899999999998      21 2333455555 56678898888  44555565   7888888999999999


Q ss_pred             ceeEecc-ccccCccCCCceeccccc-Ccc---cCCccHHhHH
Q 030112           93 KVKCKTK-VYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII  130 (183)
Q Consensus        93 ~v~f~t~-i~HpnV~~~G~vcl~~l~-~~W---~p~~~i~~iL  130 (183)
                      .|....- --..-.|.+|+||++.-. .-|   .|.++|...|
T Consensus        93 Ei~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen   93 EIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             --B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             ceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence            9987632 345667889999998653 446   5667776554

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.00033  Score=59.14  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCC-CCceEEEEEEeCCCCCCCCcEEE--EEEEeCCCCCCCCCceeEecc--
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQ-DDLMNFEVSIKPDEGYYQNGTFV--FSFEVPPIYPHDAPKVKCKTK--   99 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~-~n~~~w~~~igp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~--   99 (183)
                      -..+.+-+...+...  ..+..-.+.+.++. .+++...++|   -.+|.|.+|.  +.|.+.+.||..||.+.....  
T Consensus        18 ~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTI---p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~   94 (365)
T KOG2391|consen   18 KDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTI---PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTST   94 (365)
T ss_pred             hhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcc---cccccCCcccceEEEEecccCCCCCCeEEecCCch
Confidence            344455555555555  22333344444432 3455555555   4466666654  667789999999999976632  


Q ss_pred             ---ccccCccCCCceecccccCcc-cCCccHHhHHHHHHHhhcCC
Q 030112          100 ---VYHPNIDLEGNVCLNVLREDW-KPVLNINTIIYGLYHLFTEP  140 (183)
Q Consensus       100 ---i~HpnV~~~G~vcl~~l~~~W-~p~~~i~~iL~~i~~ll~~p  140 (183)
                         -.|-||+.+|.|.+..|. +| -|+.++..++..|.+.|.++
T Consensus        95 M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~  138 (365)
T KOG2391|consen   95 MIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSED  138 (365)
T ss_pred             hhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCC
Confidence               129999999999999995 67 56688999999999988874

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.00036  Score=51.22  Aligned_cols=104  Identities=17%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             CCCCcchHHHHHHHHHHhhc------CCC-CCceEeccCCCCCceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112           22 TPVKKQCARELRLHKDITEL------NLP-EACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l------~~~-~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP   92 (183)
                      .+++......+||..||+.|      ++. ..-.+.+.. ...-+.|.+.+  ...---||   |.+++.+|-.||..+|
T Consensus        20 agprd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrles-n~egtrwfgkcwy~hnllkye---fdvefdipityp~tap   95 (167)
T KOG3357|consen   20 AGPRDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLES-NKEGTRWFGKCWYVHNLLKYE---FDVEFDIPITYPTTAP   95 (167)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHhCcccCCcceEecc-CccccceehhhhHhhhhhhhe---eeeeeccccccCCCCc
Confidence            34566777889999999998      222 222344333 23345666666  23333444   7778888999999999


Q ss_pred             ceeEecc-ccccCccCCCceecc-cccCcc---cCCccHHhH
Q 030112           93 KVKCKTK-VYHPNIDLEGNVCLN-VLREDW---KPVLNINTI  129 (183)
Q Consensus        93 ~v~f~t~-i~HpnV~~~G~vcl~-~l~~~W---~p~~~i~~i  129 (183)
                      .+...-- --.-..+.+|.||+. .+..-|   .|.++|...
T Consensus        96 eialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha  137 (167)
T KOG3357|consen   96 EIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA  137 (167)
T ss_pred             cccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence            9875421 223345678999995 445567   345555443

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.84  E-value=0.086  Score=36.69  Aligned_cols=39  Identities=18%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             EEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           60 NFEVSIKPDEG--YYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        60 ~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      .+.+.+.+...  .-..-.+.+.+.||++||..+|.|.+.+
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence            45555532221  2334568899999999999999998765

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=95.68  E-value=0.018  Score=44.27  Aligned_cols=61  Identities=21%  Similarity=0.442  Sum_probs=49.1

Q ss_pred             EEEEeCCCCCCCCCceeEecccc---ccCccCC-----Cceeccccc-CcccCCccHHhHHHHHHHhhcC
Q 030112           79 FSFEVPPIYPHDAPKVKCKTKVY---HPNIDLE-----GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTE  139 (183)
Q Consensus        79 ~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~  139 (183)
                      +.|.|+.+||..+|.|.+....|   +||++..     ..+|+.--. ..|.+..+++.+|..|..-|..
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            56899999999999887776654   5888875     679985443 5799999999999999887664

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.08  E-value=0.059  Score=37.83  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             HHHHHHHhhcCC-CCCceEeccCCCCCceEEEEEE---eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112           32 LRLHKDITELNL-PEACKISFPNGQDDLMNFEVSI---KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (183)
Q Consensus        32 ~RL~~E~~~l~~-~~~~~~~~~~~~~n~~~w~~~i---gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i  100 (183)
                      .+...|+..|+. -++....  ....+...+.+.+   ....+.-....+.+.+.||++||..+|.|...+..
T Consensus         4 e~~~~EieaL~sIy~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDFIE--IESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSESS--STSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCccc--cccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            345666766621 1111111  1133444555555   12334444668999999999999999999877553

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=94.15  E-value=0.45  Score=34.91  Aligned_cols=79  Identities=16%  Similarity=0.261  Sum_probs=51.3

Q ss_pred             ceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCCce--eccc---c-----------cCc
Q 030112           58 LMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV--CLNV---L-----------RED  119 (183)
Q Consensus        58 ~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~v--cl~~---l-----------~~~  119 (183)
                      -..|.+.=  ..+.+.|.+..-.+-|.+|..||..+|...+..|.....  .+|.+  |-+.   +           ...
T Consensus        23 ~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~  100 (122)
T PF14462_consen   23 GRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNP  100 (122)
T ss_pred             CccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence            34576644  467778999999999999999999998776665532111  01222  2211   1           245


Q ss_pred             ccCCc-cHHhHHHHHHHhhc
Q 030112          120 WKPVL-NINTIIYGLYHLFT  138 (183)
Q Consensus       120 W~p~~-~i~~iL~~i~~ll~  138 (183)
                      |.|.. ++.+.|..|...|.
T Consensus       101 W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  101 WRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCCCCCcHHHHHHHHHHHHh
Confidence            88874 68888887776653

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=84.53  E-value=1.8  Score=36.45  Aligned_cols=88  Identities=17%  Similarity=0.369  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      +....+|.+|+..+..+..+.+.+   ++++....+++....     ....++|.+|.+||.++|.+...-++       
T Consensus        98 ~~~ys~ll~EIe~IGW~kl~~i~~---d~~ls~i~l~~~D~~-----R~H~l~l~l~~~yp~~~p~~~~~~P~-------  162 (291)
T PF09765_consen   98 PQYYSNLLKEIEAIGWDKLVQIQF---DDDLSTIKLKIFDSS-----RQHYLELKLPSNYPFEPPSCSLDLPI-------  162 (291)
T ss_dssp             -GGC-CHHHHHHHHHCGCCEEEEE----CCCSEEEEEEETTC-----EEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred             cHHHHHHHHHHHHhccccceEEec---CCCccEEEEEEEcCC-----ceEEEEEEECCCCCCCCceeeCCCCc-------
Confidence            556789999999996666666643   467888888883221     36889999999999999976433221       


Q ss_pred             CCceecccccCcccC-CccHHhHHHHHHHhh
Q 030112          108 EGNVCLNVLREDWKP-VLNINTIIYGLYHLF  137 (183)
Q Consensus       108 ~G~vcl~~l~~~W~p-~~~i~~iL~~i~~ll  137 (183)
                             .+...|.+ ..++.+++...+..+
T Consensus       163 -------~~~~~w~~~~ssL~~v~~qF~~~l  186 (291)
T PF09765_consen  163 -------PFSLSWSPSQSSLKDVVQQFQEAL  186 (291)
T ss_dssp             --------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred             -------chhhhhcccccCHHHHHHHHHHHH
Confidence                   11236877 667777766555443

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.31  E-value=6.1  Score=37.49  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhhc-CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcE-EEEEEEeCCCCCCC-CCceeEecc
Q 030112           30 RELRLHKDITEL-NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGT-FVFSFEVPPIYPHD-APKVKCKTK   99 (183)
Q Consensus        30 ~~~RL~~E~~~l-~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~-f~~~i~fp~~YP~~-pP~v~f~t~   99 (183)
                      ..+-|.+|+.-| .+-+.+.++-.+  -.-..-.+++ +|-. +-.|-+ .++.|.||.+||.+ +|.++|..+
T Consensus       421 ~pQnLgeE~S~Ig~k~~nV~fEkid--va~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  421 LPQNLGEEFSLIGVKIRNVNFEKID--VADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhhhHHhHHhHhhccccccceEeec--cccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence            456788888888 566676665222  1224455666 4433 334444 47889999999995 799999855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		4e-59
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		8e-55
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		7e-37
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		2e-25
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		6e-25
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-21
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		5e-20
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-20
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		9e-20
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-19
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		4e-19
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		5e-19
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		5e-19
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-19
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-19
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		6e-19
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-19
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		7e-19
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		7e-19
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		8e-19
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-19
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-18
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-18
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-18
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-18
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-18
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-18
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-18
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-18
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-18
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		3e-18
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-18
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-18
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		3e-18
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		3e-18
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		3e-18
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		5e-18
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		5e-18
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		7e-18
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		8e-18
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-17
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-17
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-17
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-17
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-17
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		3e-17
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		3e-17
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		3e-17
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-16
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		4e-16
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		4e-16
1jas_A	152	Hsubc2b Length = 152		4e-16
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		5e-16
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		6e-16
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		6e-16
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		7e-15
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		9e-15
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		9e-15
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-14
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-14
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-14
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-14
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-14
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		2e-14
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		2e-14
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		2e-14
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-14
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		3e-14
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		3e-14
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		5e-14
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		6e-14
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		7e-14
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		7e-14
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		1e-13
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-13
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-13
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-13
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		2e-13
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		2e-13
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-13
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		7e-13
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		7e-13
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-12
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		3e-12
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		4e-12
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		6e-12
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		7e-12
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		8e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		8e-12
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		2e-11
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		6e-11
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-10
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-10
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-10
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-10
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-10
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		2e-10
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		5e-10
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		6e-10
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		8e-08
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		8e-07
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		9e-05

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 141/180 (78%), Gaps = 6/180 (3%)
Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+++KE+ + ++     KK  A +LR+ KDI ELNLP+ C ISF +  DDL+N
Sbjct: 3   MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           F++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNV LN+LREDW
Sbjct: 57  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW 116
Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 176

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score =  209 bits (532), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
Query: 29  ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
           A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YP
Sbjct: 6   AAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 64
Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNH 148
           HD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN 
Sbjct: 65  HDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 124
Query: 149 DAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183
           +AAE+L+++   FE NV+ + +GGYIG  YFE  +
Sbjct: 125 EAAEVLQNNRRLFEQNVQRSXRGGYIGSTYFERCL 159

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 113/179 (63%), Gaps = 7/179 (3%)
Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACK---ISFPNGQDD 57
           M++L ++++K++++ EN++   P     A  +RL +D+  L+LP       I+ P+  D 
Sbjct: 3   MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 58  LMN--FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNV 115
             +   EV ++PDEGYY  G+  F+ +   +YP + PKV C  K++HPNIDL+GNVCLN+
Sbjct: 61  SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNI 120
Query: 116 LREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174
           LREDW P L++ +II GL  LF EPN  DPLN DAA+LL +    F   VR+ + GG I
Sbjct: 121 LREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
Query: 19  TGGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGT 76
           T     ++   R+  L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ G 
Sbjct: 4   TASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGK 62
Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE------DWKPVLNINTII 130
           F F  EVP  Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  ++
Sbjct: 63  FQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
Query: 131 YGLYHLFTE-PNHEDPLNHDAAE-LLRD 156
           +GL  LFT+  N +DPLN +AAE  LRD
Sbjct: 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRD 150

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 11/143 (7%)
Query: 24  VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSF 81
            ++   R+  L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ G F F  
Sbjct: 9   TRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFET 67
Query: 82  EVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYH 135
           EVP  Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  
Sbjct: 68  EVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNS 127
Query: 136 LFTE-PNHEDPLNHDAAE-LLRD 156
           LFT+  N +DPLN +AAE  LRD
Sbjct: 128 LFTDLLNFDDPLNIEAAEHHLRD 150

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ E+     C  S     DD+ ++  +I  PD+  YQ G F      P  YP  A
Sbjct: 8   RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           P+V   TKVYHPNI+  G +CL++L++ W P L ++ ++  +  L T+PN  DPL+ + A
Sbjct: 68  PRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVA 127
Query: 152 ELLRDSPACFETNVR 166
            +LR +   FE   R
Sbjct: 128 NVLRANKKQFEDTAR 142

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+YHPNID  G +CL+
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           VL+ +W P L I T++  +  L   PN  DPL +D AE
Sbjct: 90  VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+YHPNID  G +CL+
Sbjct: 32  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLD 91
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           VL+ +W P L I T++  +  L   PN  DPL +D AE
Sbjct: 92  VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+++++ +L   P +   + P G DDL +++ +I  P +  Y  G F  S   P  YP  
Sbjct: 5   RINRELADLGKDPPSSSSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PKV   T++YHPNI+  G++CL++LR+ W P L I+ ++  +  L T+PN +DPL  + 
Sbjct: 64  PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 151 AELLRDSPACFETNVR-----MALQGG 172
           A + +   + +E + R      A+ GG
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYAIHGG 150

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 23  RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PK+   TK+YHPNI+  G++CL++LR  W P L ++ ++  +  L  +PN +DPL  D 
Sbjct: 82  PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 141
Query: 151 AELLRDSPACFETNVRMALQ 170
           A++ +     +  + R   Q
Sbjct: 142 AQIYKSDKEKYNRHAREWTQ 161

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 11  RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PK+   TK+YHPNI+  G++CL++LR  W P L ++ ++  +  L  +PN +DPL  D 
Sbjct: 70  PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 151 AELLRDSPACFETNVRMALQ 170
           A++ +     +  + R   Q
Sbjct: 130 AQIYKSDKEKYNRHAREWTQ 149

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33  RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++++L   P A   + P G DDL +++ +I  P +  YQ G F  +   P  YP  
Sbjct: 7   RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PK+   TK+YHPNI+  G++CL++LR  W P L ++ ++  +  L  +PN +DPL  D 
Sbjct: 66  PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 151 AELLRDSPACFETNVRMALQ 170
           A++ +     +  + R   Q
Sbjct: 126 AQIYKSDKEKYNRHAREWTQ 145

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+YHPNID  G + L+
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           VL+ +W P L I T++  +  L   PN  DPL +D AE
Sbjct: 90  VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 83  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 152 ELLR 155
            + +
Sbjct: 143 RIYK 146

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 10  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 70  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 129
Query: 152 ELLR 155
            + +
Sbjct: 130 RIYK 133

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ +L      + S     DDL +++ +I  P +  YQ G F  +   P  YP   
Sbjct: 10  RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   TK+YHPNI+  G++CL++LR  W P L ++ ++  +  L  +PN +DPL  D A
Sbjct: 70  PKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIA 129
Query: 152 ELLR 155
            + +
Sbjct: 130 HIYK 133

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 65  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 152 ELLR 155
            + +
Sbjct: 125 RIYK 128

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 15  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 75  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 152 EL 153
            +
Sbjct: 135 RI 136

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++++L  + P +C    P G DDL +++ SI  P +  Y  G F  S   P  YP 
Sbjct: 6   RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PK+   TK+YHPNI+  GN+CL++L++ W P L ++ ++  +  L T+ N +DPL  +
Sbjct: 64  KPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 150 AAELLRDSPACFETNVR 166
            A + +     +E   R
Sbjct: 124 IAHIYKTDRPKYEATAR 140

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL+ LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+ K++ +L      + S     DDL +++ +I  P E  YQ G F  +   P  YP   
Sbjct: 8   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 68  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 152 ELLR 155
            + +
Sbjct: 128 RIYK 131

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ + + P++  YQ G F  +   P  YP   
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++ +L+       S     DD+ +++ +I  P++  Y  G F  +   P  YP   
Sbjct: 25  RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   TK+YHPNI+ +G +CL++L++ W P L I+ ++  +  L T+PN +DPL  + A
Sbjct: 85  PKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIA 144
Query: 152 ELLRDSPACFETNVR 166
            L +     ++   R
Sbjct: 145 HLYKSDRMRYDQTAR 159

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 7   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
            + +
Sbjct: 127 RIYK 130

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 13  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 73  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 132
Query: 152 ELLR 155
            + +
Sbjct: 133 RIYK 136

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 4   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 64  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 152 ELLR 155
            + +
Sbjct: 124 RIYK 127

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 15  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 75  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 152 ELLR 155
            + +
Sbjct: 135 RIYK 138

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           D+L  F+V+I+ P++  Y++G F     +P  YP +APKV+  TK+YHP ID  G + L+
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           VL+ +W P L I T++  +  L   PN  DPL +D AE
Sbjct: 90  VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61  FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           F V I  P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ 
Sbjct: 40  FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 99
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           W P L I T++  +  L + PN +DPL +D AE
Sbjct: 100 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 132

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61  FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           F V I  P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ 
Sbjct: 37  FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 96
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           W P L I T++  +  L + PN +DPL +D AE
Sbjct: 97  WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61  FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           F V I  P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ 
Sbjct: 35  FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           W P L I T++  +  L + PN +DPL +D AE
Sbjct: 95  WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 127

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61  FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           F V I  P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ 
Sbjct: 33  FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 92
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           W P L I T++  +  L + PN +DPL +D AE
Sbjct: 93  WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 125

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61  FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
           F V I  P +  ++ GTF     +P  YP  APKV+  TK+YHPN+D  G +CL++L++ 
Sbjct: 38  FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 97
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
           W P L I T++  +  L + PN +DPL +D AE
Sbjct: 98  WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 130

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++++L    P  C+   P G DDL +++ +I  P +  YQ G F  +   P  YP 
Sbjct: 11  RIQKELSDLQRDPPAHCRAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PK+   TK+YHPNI+  G++ L++LR  W P L ++ ++  +  L  +PN +DPL  D
Sbjct: 69  KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 150 AAELLRDSPACFETNVRMALQ 170
            A++ +     +  + R   Q
Sbjct: 129 IAQIYKSDKEKYNRHAREWTQ 149

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 33  RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHD 90
           RL +++  L +     IS FP   D+L  +  +I    G  Y++  +  S E P  YP++
Sbjct: 34  RLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
           AP VK  T  YHPN+D +GN+ L++L+E W  + ++ TI+  +  L  EPN + PLN  A
Sbjct: 93  APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 151 AELLRDSPACFE 162
           AEL ++ P  F+
Sbjct: 153 AELWKN-PTAFK 163

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 8   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 68  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 152 ELLR 155
            + +
Sbjct: 128 RIYK 131

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+HK++ +L  + P  C    P G DD+ +++ +I  P++  YQ G F  +   P  YP 
Sbjct: 7   RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  +
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAELLRDSPACFETNVRMALQGGYI-GDEYFEPVM 183
            A + +     +    R   Q   + G  Y E +M
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIM 159

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 83  PKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 152 ELLR 155
            + +
Sbjct: 143 RIYK 146

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R+HK++ +L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 4   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 64  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 152 ELLR 155
            + +
Sbjct: 124 RIYK 127

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +D  +L       +S    +D+++ +E  I  P E  +++GTF  S E    YP+  
Sbjct: 8   RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           P VK  +K++HPN+  +G++CL++L+  W P  ++  I+  +  L  EPN   P N  AA
Sbjct: 68  PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 127
Query: 152 ELLRDSPACFETNVRMALQGGYI 174
           +L +++   +E  V+  ++  ++
Sbjct: 128 QLYQENRREYEKRVQQIVEQSWL 150

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +D  +L       +S    +D+++ +E  I  P E  +++GTF  S E    YP+  
Sbjct: 11  RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           P VK  +K++HPN+  +G++CL++L+  W P  ++  I+  +  L  EPN   P N  AA
Sbjct: 71  PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 130
Query: 152 ELLRDSPACFETNVRMALQGGYI 174
           +L +++   +E  V+  ++  ++
Sbjct: 131 QLYQENRREYEKRVQQIVEQSWL 153

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 21  GTPVKKQCAREL-RLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVF 79
            TP +K+  R+  RL +D      P A     P   + ++   V   PD+  +  GTF  
Sbjct: 2   STPARKRLMRDFKRLQQD------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 80  SFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139
           S +    YP+  P V+  ++++HPNI  +G++CL++L+  W P+ ++  I+  +  L  +
Sbjct: 56  SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 140 PNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176
           PN   P N +AA +  +S   +   VR  ++  +  D
Sbjct: 116 PNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 24  VKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFE 82
           V K+  +ELR     T L   +    +FP+G D+L  +  ++  P +  Y++  +  + E
Sbjct: 10  VSKRLQQELR-----TLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKLTLE 63
Query: 83  VPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNH 142
            P  YP+  P VK  T  +HPN+D  GN+CL++L+E+W    ++ TI+  L  L  EPN+
Sbjct: 64  FPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNN 123
Query: 143 EDPLNHDAAELLRD 156
             PLN  AA++  +
Sbjct: 124 ASPLNAQAADMWSN 137

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R++K++++L      + S     DD+ +++ +I  P++  YQ G F  +   P  YP   
Sbjct: 5   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  + A
Sbjct: 65  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 152 ELLR 155
            + +
Sbjct: 125 RIYK 128

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+HK++ +L  + P  C+   P G DD+ +++ +I  P++  YQ G F  +   P  YP 
Sbjct: 5   RIHKELNDLARDPPAQCRAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV   T++YHP I+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  +
Sbjct: 63  KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 150 AAELLR 155
            A + +
Sbjct: 123 IARIYK 128

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNI 126
           PD   Y+ GT+     +P  YP + PKV+  TK+YHPNID  G +CL++L++ W P L I
Sbjct: 40  PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLYHLFTEPNHEDPLNHDAAE 152
            T++  +  L + P  +DPL+   AE
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAE 125

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 27  QCAREL-RLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVP 84
           Q ++EL RL K++ ++      +I       +   +   IK  EG  Y+ G F  +  +P
Sbjct: 20  QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIP 79
Query: 85  PIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE 143
             YP++ PK+K  TK++HPNI  + G +CL+VL+ +W P L I T +  +  L ++P  +
Sbjct: 80  NDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPD 139
Query: 144 DPLNHDAAELLRDSPACF 161
           DP + + A++ +++ A F
Sbjct: 140 DPQDAEVAKMYKENHALF 157

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNI 126
           PD   Y+ GT+     +P  YP + PKV+  TK+YHPNID  G +CL++L++ W P L I
Sbjct: 40  PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLYHLFTEPNHEDPLNHDAAE 152
            T++  +  L + P  +DPL+   AE
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAE 125

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 21  GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVF 79
            TP ++      RL +D   L       +S    ++++M +   I   EG  +++GTF  
Sbjct: 2   STPARR------RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 80  SFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139
             E    YP+  P V+  +K++HPN+  +G++CL++L+  W P  ++++I+  +  L  E
Sbjct: 56  VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDE 115
Query: 140 PNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173
           PN   P N  AA+L +++   +E  V   ++  +
Sbjct: 116 PNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 56  DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           +D+  +EV  I P +  Y+ G F    + P  YP   PK+K  ++++HPNID EGNVC++
Sbjct: 31  NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 115 VL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACF 161
           +L              E W PV  + TI+  +  + T+PN E P N DAA++ R++ A F
Sbjct: 91  ILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEF 150
Query: 162 ETNVRMALQ 170
           +  V   ++
Sbjct: 151 KKKVAQCVR 159

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 29  ARELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
           A   RL K++ E+     C + +F N Q D   L+ ++  I PD   Y  G F      P
Sbjct: 4   AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 60
Query: 85  PIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHE 143
             YP   PK+  KTK+YHPNID +G VCL V+  E+WKP    + +I  L  L  +P  E
Sbjct: 61  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 144 DPLNHDAAE 152
            PL  D AE
Sbjct: 121 HPLRADLAE 129

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 29  ARELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
           A   RL K++ E+     C + +F N Q D   L+ ++  I PD   Y  G F      P
Sbjct: 2   AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 58
Query: 85  PIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHE 143
             YP   PK+  KTK+YHPNID +G VCL V+  E+WKP    + +I  L  L  +P  E
Sbjct: 59  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 118
Query: 144 DPLNHDAAE 152
            PL  D AE
Sbjct: 119 HPLRADLAE 127

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL----REDWKPVLNIN 127
           Y+ G F     +P  YP + P+++  T +YHPNID  G +CL+VL    +  W+P LNI 
Sbjct: 48  YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 107
Query: 128 TIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           T++  +  L +EPN +DPL  D +   + +   F  N R
Sbjct: 108 TVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNAR 146

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 21  GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS 80
            TP +++  R+ +  K+    + P     S P   + ++   + I P +  Y++GTF   
Sbjct: 2   STPARRRLMRDFKRMKE----DAPPGVSAS-PLPDNVMVWNAMIIGPADTPYEDGTFRLL 56
Query: 81  FEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEP 140
            E    YP+  P VK  ++++HPN+   G +CL++L+  W P  ++ +I+  +  LF +P
Sbjct: 57  LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116
Query: 141 NHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173
           N   P N +AA L +D  + +   V+  ++  +
Sbjct: 117 NPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ E+ L  P  C    P G D++  +  +I  P    Y+ G F       P YP 
Sbjct: 7   RIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
             PKV  +T++YH NI+ +G +CL++L+++W P L I+ ++  +  L T+ N  DPL
Sbjct: 65  KPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 121

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 34  LHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
           ++K++T L    P+  K+ FPN ++DL + +V+I+  EG  Y  G F     +   +P  
Sbjct: 18  VYKEVTTLTADPPDGIKV-FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PK    TK++HPN+   G +C+NVL+ DW   L I  ++  +  L   PN E  LN +A
Sbjct: 76  PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 151 AELLRDSPACFETNVRM 167
             LL ++   +    R+
Sbjct: 136 GRLLLENYEEYAARARL 152

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 33  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 93  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 37  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 97  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 92  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ ++ L  P  C    P G D++  +  +I  P    Y+ G F       P YP 
Sbjct: 52  RIQKELADITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
             PKV  +T++YH NI+ +G +CL++L+++W P L I+ ++  +  L T+ N  DPL
Sbjct: 110 KPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 166

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 57  DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL 116
           +++ +   + PD+  Y    F      PP YP   P +K  TK+YHPN+D  G +CL ++
Sbjct: 30  NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
Query: 117 -REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNV 165
             E+WKP      ++  L  L   PN  +PL  D A+LL  +P  F  N 
Sbjct: 90  SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 139

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 57  DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL 116
           +++ +   + PD+  Y    F      PP YP   P +K  TK+YHPN+D  G +CL ++
Sbjct: 33  NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
Query: 117 -REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNV 165
             E+WKP      ++  L  L   PN  +PL  D A+LL  +P  F  N 
Sbjct: 93  SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 142

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTII 130
           Y+ G F     +PP YP++ PK+K  TK++HPNI  + G +CL++L+ +W P L I T +
Sbjct: 89  YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 131 YGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
             +  +  +P   DP + + A+++ ++   F    ++
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKL 185

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HP +   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L ED  W+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 28  CARELRLHKDITELNLPEACKISFP-NGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPP 85
            +R  R+ K+I  +    A  I+     + D+ + + + + P    Y+ G FV   EVP 
Sbjct: 1   SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 86  IYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
            YP   PK++  TKVYHPNI  + G +CL++LR  W PV+ + + +  L  L   P   D
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 145 PLNHDAAE-LLRD 156
           P + + A+  LRD
Sbjct: 121 PQDAEVAQHYLRD 133

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN + P   +A  +   +   +E  VR
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           VCL++L E  DW+P + I  I+ G+  L  EPN + P   +A  +   +   +E  VR
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 55  QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCL 113
           + DL N+EV+I  P   YY+ G F    + P  YP+  P  +  TK++HPNI   G+VC+
Sbjct: 34  EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 93
Query: 114 NVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
           ++L              E W P  N+ TI+  +  L  EPN   P N DA+ + R
Sbjct: 94  SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 148

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           V L++L ED  W+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 92  VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 47  CKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN 104
           CK S  +G  DLMN++V I  KP   + + G +  +   P  YP   PK +    ++HPN
Sbjct: 35  CKSS--DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPN 91
Query: 105 IDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFE 162
           +   G VCL++L E+  WKP + I  I+ G+  L  +PN   P   +A  + +     +E
Sbjct: 92  VYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYE 151
Query: 163 TNVR 166
             VR
Sbjct: 152 KRVR 155

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 29  ARELRLHKDITELNLPEACKISFP-NGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPPI 86
           +R  R+ K+I  +    A  I+     + D+ + + + + P    Y+ G FV   EVP  
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 87  YPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDP 145
           YP   PK++  TKVYHPNI  + G +CL++L+  W PV+ + + +  L  L   P   DP
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 146 LNHDAAE-LLRD 156
            + + A+  LRD
Sbjct: 121 QDAEVAQHYLRD 132

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 55  QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCL 113
           + DL N+EV+I  P   YY+ G F    + P  YP+  P  +  TK++HPNI   G+VC+
Sbjct: 31  EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 90
Query: 114 NVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
           ++L              E W P  N+ TI+  +  L  EPN   P N DA+ + R
Sbjct: 91  SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 145

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52  PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
           P+G  +LMN+E +I   +G  ++ G F         YP   PK K +  ++HPN+   G 
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           V L++L ED  W+P + I  I+ G+  L  EPN +DP   +A  +   +   +E  VR
Sbjct: 92  VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 53  NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV 111
           +G  DL  +E  I   EG  +  G +  + E P  YP   PKVK     YHPN+   G +
Sbjct: 33  DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 92
Query: 112 CLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           CL++L E  DW+P + +  I+ G+  L   PN   P    A      + A ++  V +
Sbjct: 93  CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLL 150

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 53  NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV 111
           +G  DL  +E  I   EG  +  G +  + E P  YP   PKVK     YHPN+   G +
Sbjct: 35  DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 94
Query: 112 CLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           CL++L E  DW+P + +  I+ G+  L   PN   P    A      + A ++  V +
Sbjct: 95  CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLL 152

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 56  DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
           +DL  +EV  I P +  Y+ G F      P  YP   PK+K  T+++HPN+D  G+VC++
Sbjct: 45  NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 115 VL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           +L              E W P+  + TI+  +  +  +PN + P N DAA+  R+
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRE 159

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 36  KDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKV 94
           +++  + L  + +  +P+  D +  F V  K  EG  Y++GT++   ++P  YP  +P +
Sbjct: 17  REMDYMRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74
Query: 95  KCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTII-YGLYHLFTEPNHEDPLNHDAAE 152
               ++ HPN+D   G+VCL+V+ + W P+  +  I    L  L   PN  DPLN  AA 
Sbjct: 75  GFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
Query: 153 LLRDSPACFETNVR 166
           LL      F+  +R
Sbjct: 135 LLHADRVGFDALLR 148

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 20  GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFV 78
           G +  +KQC        D T+L +     +   NG     +F+V    P+   Y+ G + 
Sbjct: 1   GTSLTRKQC--------DFTKL-IMAGYDLELNNGST--QDFDVMFHGPNGTAYEGGIWK 49
Query: 79  FSFEVPPIYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLN-INTIIYGLYHL 136
               +P  YP  +P +    K+ HPN+D   G+VCL+V+ + W P+ + +N     L  L
Sbjct: 50  VHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQL 109
Query: 137 FTEPNHEDPLNHDAAELLRDSPACFETNVR 166
            T PN  DPLN DAA LL      +E  V+
Sbjct: 110 LTYPNPSDPLNSDAASLLMKDKNIYEEKVK 139

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 17  NNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
           ++  GT +K+  A     +K +T LN PE   ++ P  +++   +E  I  P++  ++ G
Sbjct: 2   SHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 55
Query: 76  TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKP 122
            F      P  YP   PK++   +++HPNI  +G VC+++L              E W P
Sbjct: 56  VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 115
Query: 123 VLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           V ++  I+  +  +  EPN E   N DA+++ RD
Sbjct: 116 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRD 149

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 17  NNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
            +  GT +K+  A     +K +T LN PE   ++ P  +++   +E  I  P++  ++ G
Sbjct: 1   GHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 54
Query: 76  TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKP 122
            F      P  YP   PK++   +++HPNI  +G VC+++L              E W P
Sbjct: 55  VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 114
Query: 123 VLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           V ++  I+  +  +  EPN E   N DA+++ RD
Sbjct: 115 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRD 148

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 20  GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFV 78
            GT +K+  A     +K +T LN PE   ++ P  +++   +E  I  P++  ++ G F 
Sbjct: 7   AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 60
Query: 79  FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLN 125
                P  YP   PK++   +++HPNI  +G VC+++L              E W PV +
Sbjct: 61  AILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS 120
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           +  I+  +  +  EPN E   N DA+++ RD
Sbjct: 121 VEKILLSVVSMLAEPNDESGANVDASKMWRD 151

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 20  GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFV 78
            GT +K+  A     +K +T LN PE   ++ P  +++   +E  I  P++  ++ G F 
Sbjct: 1   AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 54
Query: 79  FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLN 125
                P  YP   PK++   +++HPNI  +G VC+++L              E W PV +
Sbjct: 55  AILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS 114
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           +  I+  +  +  EPN E   N DA+++ RD
Sbjct: 115 VEKILLSVVSMLAEPNDESGANVDASKMWRD 145

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 49  ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107
           ++ P  ++++  ++  I+ P +  Y +G F    E P  YP   PK+     + HPNI  
Sbjct: 25  VAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84
Query: 108 EGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL 154
            G VC+++L              E W PV ++  I+  +  + +EPN E   N DA  L 
Sbjct: 85  NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144
Query: 155 RDSPACFETNVRMAL 169
           RD+   FE  V++++
Sbjct: 145 RDNRPEFERQVKLSI 159

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 72  YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTII 130
           Y+ G +    ++P  YP  +P +    K++HPNID   G VCL+V+ + W  + ++  I 
Sbjct: 65  YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIF 124
Query: 131 YG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQ 170
              L  L   PN  DPLN DAA +    P  ++  ++  +Q
Sbjct: 125 ESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQ 165

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
           P +  Y+ G +    ++P  YP + PKV+  TK++HPNI  + G +CL++L++ W   + 
Sbjct: 63  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 122
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           + T++  L  L      +DP +   A   + +P  F+   R+
Sbjct: 123 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 164

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
           P +  Y+ G +    ++P  YP + PKV+  TK++HPNI  + G +CL++L++ W   + 
Sbjct: 99  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 158
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           + T++  L  L      +DP +   A   + +P  F+   R+
Sbjct: 159 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 200

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
           P +  Y+ G +    ++P  YP + PKV+  TK++HPNI  + G +CL++L++ W   + 
Sbjct: 50  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 109
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           + T++  L  L      +DP +   A   + +P  F+   R+
Sbjct: 110 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 151

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
           P +  Y+ G +    ++P  YP + PKV+  TK++HPNI  + G +CL++L++ W   + 
Sbjct: 48  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 107
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           + T++  L  L      +DP +   A   + +P  F+   R+
Sbjct: 108 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 149

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67  PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
           P +  Y+ G +    ++P  YP + PKV+  TK++HPNI  + G +CL++L++ W   + 
Sbjct: 47  PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 106
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
           + T++  L  L      +DP +   A   + +P  F+   R+
Sbjct: 107 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 148

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52  PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
           P  + DL  +E  I  P +  Y+N  F    EVP  YP + PK+   +  + H N+    
Sbjct: 41  PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
           G +CLN+L+ E+W PV ++   ++ ++ L  EP  + PL+ D   ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52  PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
           P  + DL  +E  I  P +  Y+N  F    EVP  YP + PK+   +  + H N+    
Sbjct: 41  PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
           G +CLN+L+ E+W PV ++   ++ ++ L  EP  + PL+ D   ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52  PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
           P  + DL  +E  I  P +  Y+N  F    EVP  YP + PK+   +  + H N+    
Sbjct: 41  PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
           G +CLN+L+ E+W PV ++   ++ ++ L  EP  + PL+ D   ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 32  LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKP-DEGYYQNGTFVFSFEVPPIYPHD 90
           L LH+D  +L       I+     +D+M +EV I+      +Q   F  +      Y + 
Sbjct: 26  LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85
Query: 91  APKVKCKTKVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLN 147
            P VK  T  +HPN+D   G  C++ L   E W     +++I+  L  + + P  E+P+N
Sbjct: 86  PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145
Query: 148 HDAAELLRDSPACFETNVRM 167
            +AA +L    + + T +R+
Sbjct: 146 LEAARILVKDESLYRTILRL 165

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 20  GGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEG-YYQNGT 76
           G  P     + + RL K++  L  + P    ++  + Q+ +  + V ++   G  Y+   
Sbjct: 13  GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEK 72
Query: 77  FVFSFEVPPIYPHDAPKVKCKTK--VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLY 134
           F   F+    YP D+P+V    +    HP++   G++CL++L EDW P L++ ++   + 
Sbjct: 73  FQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
Query: 135 HLFT 138
            + +
Sbjct: 133 SMLS 136

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 44  PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNG--TFVFSFEVPPIYPHDAPKVKCKTKV 100
           P +  I F    D + N+ + +K P +  Y     T+  S      YPH+ P V+  T V
Sbjct: 36  PHSTAI-FSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94
Query: 101 YHPNIDLEGNVCLNVLREDWKPVLNINTII-YGLYHLFTE--PNHEDPLNHDAAELLRDS 157
           Y P +  EG +C  ++ + W P  + + +I   L  +F++     +D +N +A   L   
Sbjct: 95  YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKF 154
Query: 158 PACFETNVR 166
           P  F   VR
Sbjct: 155 PQDFAARVR 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-82
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-77
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	3e-76
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	7e-58
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-53
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-47
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	1e-41
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	1e-40
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	1e-39
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	1e-39
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-39
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	3e-39
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	5e-39
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	6e-39
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	7e-39
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	8e-39
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	1e-38
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-38
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-38
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	5e-38
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-37
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-37
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	2e-37
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-37
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-37
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	6e-37
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	7e-37
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-36
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-36
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-36
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	5e-35
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	6e-35
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	1e-34
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-34
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	2e-34
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	5e-34
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	7e-34
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	6e-33
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-32
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	3e-32
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	5e-30
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-29
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-29
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	7e-29
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-28
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-28
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	1e-26
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-21
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	1e-20
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	8e-17
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	7e-06

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  240 bits (615), Expect = 2e-82
 Identities = 108/183 (59%), Positives = 142/183 (77%), Gaps = 6/183 (3%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
           MI+LF +K+++KE+ + ++     KK  A +LR+ KDI ELNLP+ C ISF +  DDL+N
Sbjct: 3   MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSDP-DDLLN 56

Query: 61  FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
           F++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNV LN+LREDW
Sbjct: 57  FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW 116

Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
           KPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 176

Query: 181 PVM 183
             +
Sbjct: 177 RCL 179

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  228 bits (583), Expect = 2e-77
 Identities = 73/188 (38%), Positives = 111/188 (59%), Gaps = 7/188 (3%)

Query: 1   MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLM- 59
           M++L ++++K+++  EN    +      A  +RL +D+  L+LP    ++     D    
Sbjct: 3   MLKLRQLQKKKQK--ENENSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60

Query: 60  ----NFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNV 115
                 EV ++PDEGYY  G+  F+ +   +YP + PKV C  K++HPNIDL+GNVCLN+
Sbjct: 61  SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNI 120

Query: 116 LREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175
           LREDW P L++ +II GL  LF EPN  DPLN DAA+LL +    F   VR+ + GG I 
Sbjct: 121 LREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 180

Query: 176 DEYFEPVM 183
              ++ ++
Sbjct: 181 HVKYDNIV 188

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  224 bits (573), Expect = 3e-76
 Identities = 100/159 (62%), Positives = 125/159 (78%), Gaps = 1/159 (0%)

Query: 25  KKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVP 84
               A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V 
Sbjct: 2   SMASAAQLRIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGFYKSGKFVFSFKVG 60

Query: 85  PIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
             YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN ED
Sbjct: 61  QGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPED 120

Query: 145 PLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183
           PLN +AAE+L+++   FE NV+ +++GGYIG  YFE  +
Sbjct: 121 PLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 159

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  177 bits (452), Expect = 7e-58
 Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 10/159 (6%)

Query: 17  NNTGGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQN 74
           + T     ++   R+  L K++ EL  NLP  CK+ FP+  + L  F++++ PDEGYYQ 
Sbjct: 2   SATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDP-NKLHCFQLTVTPDEGYYQG 60

Query: 75  GTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR------EDWKPVLNINT 128
           G F F  EVP  Y    PKVKC TK++HPNI   G +CL++LR        W P   +  
Sbjct: 61  GKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKD 120

Query: 129 IIYGLYHLFTE-PNHEDPLNHDAAELLRDSPACFETNVR 166
           +++GL  LFT+  N +DPLN +AAE        F   V 
Sbjct: 121 VVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVD 159

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  167 bits (424), Expect = 2e-53
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 26  KQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYY--QNGTFVFSFE 82
           K    E+  + +      P +  I   +  D + N+ + +K P +  Y     T+  S  
Sbjct: 18  KLLLEEVDANNEANSSGSPHSTAIFSVDT-DTIYNWILKVKAPADSVYGGAGNTYQLSVL 76

Query: 83  VPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTI---IYGLYHLFTE 139
               YPH+ P V+  T VY P +  EG +C  ++ + W P  + + +   +        +
Sbjct: 77  FSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYK 136

Query: 140 PNHEDPLNHDAAELLRDSPACFETNVRMAL 169
              +D +N +A   L   P  F   VR   
Sbjct: 137 SRRDDDVNPEARHYLEKFPQDFAARVRRGR 166

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  151 bits (383), Expect = 2e-47
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPH 89
           +R+ K++ +L    P   +    +   +++ +   + PD+  Y    F      PP YP 
Sbjct: 7   MRVVKELEDLQKKPPPYLRN-LSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPF 65

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNH 148
             P +K  TK+YHPN+D  G +CL ++  E+WKP      ++  L  L   PN  +PL  
Sbjct: 66  KPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 125

Query: 149 DAAELLRDSPACFETNVR 166
           D A+LL  +P  F  N  
Sbjct: 126 DLADLLTQNPELFRKNAE 143

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  136 bits (344), Expect = 1e-41
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPI 86
           A   RL K++ E+     +  +      + +L+ ++  I PD   Y  G F      P  
Sbjct: 2   AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED-WKPVLNINTIIYGLYHLFTEPNHEDP 145
           YP   PK+  KTK+YHPNID +G VCL V+  + WKP    + +I  L  L  +P  E P
Sbjct: 61  YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120

Query: 146 LNHDAAELLRDSPACFETNVR 166
           L  D AE        F  N  
Sbjct: 121 LRADLAEEYSKDRKKFCKNAE 141

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  133 bits (338), Expect = 1e-40
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            ++K++T L  + P+  K+ FPN  +DL + +V+I+ P+   Y  G F     +   +P 
Sbjct: 17  LVYKEVTTLTADPPDGIKV-FPNE-EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PK    TK++HPN+   G +C+NVL+ DW   L I  ++  +  L   PN E  LN +
Sbjct: 75  SPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEE 134

Query: 150 AAELLRDSPACFETNVRM 167
           A  LL ++   +    R+
Sbjct: 135 AGRLLLENYEEYAARARL 152

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  131 bits (331), Expect = 1e-39
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+   L    P       P   ++  +F + I  PD   Y+ GT+     +P  YP 
Sbjct: 5   RITKETQNLANEPPPGIMA-VPVP-ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
           + PKV+  TK+YHPNID  G +CL++L++ W P L I T++  +  L + P  +DPL+  
Sbjct: 63  EPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122

Query: 150 AAELLRDSPACFETNVRM 167
            AE  +      E   R 
Sbjct: 123 VAEHFKQDKNDAEHVARQ 140

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  131 bits (331), Expect = 1e-39
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+  +L  +         P+  D+L  F+V+I+ P++  Y++G F     +P  YP 
Sbjct: 9   RIIKETEKLVSDPVPGITA-EPHD-DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
           +APKV+  TK+YHPNID  G +CL+VL+ +W P L I T++  +  L   PN  DPL +D
Sbjct: 67  EAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126

Query: 150 AAELLRDSPACFETNVRM 167
            AE    +    +   R 
Sbjct: 127 VAEDWIKNEQGAKAKARE 144

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  130 bits (330), Expect = 1e-39
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K+   L        K   P+   +   F V I  P +  ++ GTF     +P  YP 
Sbjct: 9   RIIKETQRLLAEPVPGIKA-EPDE-SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 66

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
            APKV+  TK+YHPN+D  G +CL++L++ W P L I T++  +  L + PN +DPL +D
Sbjct: 67  AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 126

Query: 150 AAELLRDSPACFETNVRM 167
            AE  + + A      R 
Sbjct: 127 VAEQWKTNEAQAIETARA 144

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  130 bits (329), Expect = 3e-39
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 12  KEDAENNTGGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PD 68
           K    ++     V +      R+HK++ +L  + P  C    P G DD+ +++ +I  P+
Sbjct: 2   KHHHHHHPMSGLVPRGSMALKRIHKELNDLARDPPAQCSA-GPVG-DDMFHWQATIMGPN 59

Query: 69  EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINT 128
           +  YQ G F  +   P  YP   PKV   T++YHPNI+  G++CL++LR  W P L I+ 
Sbjct: 60  DSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISK 119

Query: 129 IIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           ++  +  L  +PN +DPL  + A + +     +    R
Sbjct: 120 VLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 157

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  129 bits (327), Expect = 5e-39
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
           +R  R+ K+I  +  +      +     + D+ + + +   P    Y+ G FV   EVP 
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59

Query: 86  IYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
            YP   PK++  TKVYHPNI  + G +CL++L+  W PV+ + + +  L  L   P   D
Sbjct: 60  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119

Query: 145 PLNHDAAELLRDSPACFETNVRM 167
           P + + A+        F     +
Sbjct: 120 PQDAEVAQHYLRDRESFNKTAAL 142

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  129 bits (327), Expect = 6e-39
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 33  RLHKDITELNL-----PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+      ++       I  P +  Y+ G +    ++P  
Sbjct: 12  RIKREFKEVLKSEETSKNQIKV-DLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 69

Query: 87  YPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDP 145
           YP + PKV+  TK++HPNI  + G +CL++L++ W   + + T++  L  L      +DP
Sbjct: 70  YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 129

Query: 146 LNHDAAELLRDSPACFETNVRM 167
            +   A   + +P  F+   R+
Sbjct: 130 QDAVVANQYKQNPEMFKQTARL 151

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  129 bits (326), Expect = 7e-39
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++ +L  + P  C    P G DDL +++ +I  P E  YQ G F  +   P  YP 
Sbjct: 8   RIQKELQDLGRDPPAQCSA-GPVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  +
Sbjct: 66  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125

Query: 150 AAELLRDSPACFETNVR 166
            A + +     +    R
Sbjct: 126 IARIYKTDRERYNQLAR 142

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  129 bits (327), Expect = 8e-39
 Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R++K++ +L  + P  C    P G DD+ +++ +I  P++  Y  G F  +   P  YP 
Sbjct: 25  RINKELNDLSKDPPTNCSA-GPVG-DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV   TK+YHPNI+ +G +CL++L++ W P L I+ ++  +  L T+PN +DPL  +
Sbjct: 83  KPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142

Query: 150 AAELLRDSPACFETNVR 166
            A L +     ++   R
Sbjct: 143 IAHLYKSDRMRYDQTAR 159

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  129 bits (327), Expect = 1e-38
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 6   KVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNL--PEACKISFPNGQDDLMNFEV 63
           K KE +   ++N+   +   K      R+ K++ ++ L  P  C    P G D++  +  
Sbjct: 31  KKKESKVSMSKNSKLLSTSAK------RIQKELADITLDPPPNCSA-GPKG-DNIYEWRS 82

Query: 64  SIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKP 122
           +I  P    Y+ G F       P YP   PKV  +T++YH NI+ +G +CL++L+++W P
Sbjct: 83  TILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 142

Query: 123 VLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
            L I+ ++  +  L T+ N  DPL    A     + A  +   R
Sbjct: 143 ALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMAR 186

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  128 bits (325), Expect = 1e-38
 Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +++  L +         FP+G D+L  +  ++  P +  Y++  +  + E P  YP+
Sbjct: 13  RLQQELRTLLMSGDPGITA-FPDG-DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             P VK  T  +HPN+D  GN+CL++L+E+W    ++ TI+  L  L  EPN+  PLN  
Sbjct: 71  KPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130

Query: 150 AAELLRDSPACFETNVR 166
           AA++  +    ++  + 
Sbjct: 131 AADMWSNQTE-YKKVLH 146

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  129 bits (326), Expect = 3e-38
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
           +R  R+ K+I  +  +      +     + D+ + + +   P    Y+ G FV   EVP 
Sbjct: 2   SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60

Query: 86  IYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
            YP   PK++  TKVYHPNI  + G +CL++LR  W PV+ + + +  L  L   P   D
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120

Query: 145 PLNHDAAELLRDSPACFETNVRM 167
           P + + A+        F     +
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAAL 143

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  126 bits (320), Expect = 5e-38
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            L +   +    +     +   N      +F+V    P+   Y+ G +     +P  YP 
Sbjct: 3   SLTRKQCDFTKLIMAGYDLE-LNN-GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60

Query: 90  DAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIY-GLYHLFTEPNHEDPLN 147
            +P +    K+ HPN+D   G+VCL+V+ + W P+ ++  +    L  L T PN  DPLN
Sbjct: 61  ASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLN 120

Query: 148 HDAAELLRDSPACFETNVRM 167
            DAA LL      +E  V+ 
Sbjct: 121 SDAASLLMKDKNIYEEKVKE 140

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  128 bits (323), Expect = 1e-37
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
              LRL K++ ++     +           +   +   IK P+   Y+ G F  +  +P 
Sbjct: 23  KELLRLQKELKDIENENVQEIDA-HIKD-SNFFEWVGFIKGPEGTPYEGGHFTLAITIPN 80

Query: 86  IYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
            YP++ PK+K  TK++HPNI  + G +CL+VL+ +W P L I T +  +  L ++P  +D
Sbjct: 81  DYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDD 140

Query: 145 PLNHDAAELLRDSPACFETNVRM 167
           P + + A++ +++ A F     +
Sbjct: 141 PQDAEVAKMYKENHALFVKTASV 163

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  127 bits (321), Expect = 1e-37
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 33  RLHKDITEL-----NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+      ++       I  P +  Y+ G +    ++P  
Sbjct: 9   RIKREFKEVLKSEETSKNQIKV-DLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 66

Query: 87  YPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDP 145
           YP + PKV+  TK++HPNI  + G +CL++L++ W   + + T++  L  L      +DP
Sbjct: 67  YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 126

Query: 146 LNHDAAELLRDSPACFETNVRM 167
            +   A   + +P  F+   R+
Sbjct: 127 QDAVVANQYKQNPEMFKQTARL 148

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  125 bits (317), Expect = 2e-37
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +D   L  + P       P   +++M +   I  PD+  +  GTF  S +    YP+
Sbjct: 8   RLMRDFKRLQQDPPAGISG-APQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             P V+  ++++HPNI  +G++CL++L+  W P+ ++  I+  +  L  +PN   P N +
Sbjct: 66  KPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125

Query: 150 AAELLRDSPACFETNVR 166
           AA +  +S   +   VR
Sbjct: 126 AARMYSESKREYNRRVR 142

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  125 bits (317), Expect = 3e-37
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 33  RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +++  L +   +     FP   D+L  +  +I       Y++  +  S E P  YP+
Sbjct: 34  RLQQELMTLMMSGDKGISA-FPES-DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
           +AP VK  T  YHPN+D +GN+ L++L+E W  + ++ TI+  +  L  EPN + PLN  
Sbjct: 92  NAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151

Query: 150 AAELLRDSPACFETNVR 166
           AAEL ++  A F+  ++
Sbjct: 152 AAELWKNPTA-FKKYLQ 167

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  127 bits (321), Expect = 4e-37
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 30  RELRLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIY 87
           R  R  K++ +       +I       ++       I  P +  Y+ G +    ++P  Y
Sbjct: 61  RIKREFKEVLKSEETSKNQIKVDLVD-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 119

Query: 88  PHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
           P + PKV+  TK++HPNI  + G +CL++L++ W   + + T++  L  L      +DP 
Sbjct: 120 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 179

Query: 147 NHDAAELLRDSPACFETNVRM 167
           +   A   + +P  F+   R+
Sbjct: 180 DAVVANQYKQNPEMFKQTARL 200

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  124 bits (314), Expect = 6e-37
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
            R  RL +++  L    P      + +  D + +    I       Y+ G F     +P 
Sbjct: 4   QRASRLKRELHMLATEPPPGITC-WQDK-DQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61

Query: 86  IYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL----REDWKPVLNINTIIYGLYHLFTEPN 141
            YP + P+++  T +YHPNID  G +CL+VL    +  W+P LNI T++  +  L +EPN
Sbjct: 62  RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 121

Query: 142 HEDPLNHDAAELLRDSPACFETNVR 166
            +DPL  D +   + +   F  N R
Sbjct: 122 PDDPLMADISSEFKYNKPAFLKNAR 146

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  124 bits (314), Expect = 7e-37
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 29  ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIY 87
               R   D   L      K+ +P+  D +  F V  K P+   Y++GT++   ++P  Y
Sbjct: 12  RSNRRREMDYMRL-CNSTRKV-YPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDY 67

Query: 88  PHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIY-GLYHLFTEPNHEDP 145
           P  +P +    ++ HPN+D   G+VCL+V+ + W P+  +  I    L  L   PN  DP
Sbjct: 68  PFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDP 127

Query: 146 LNHDAAELLRDSPACFETNVRM 167
           LN  AA LL      F+  +R 
Sbjct: 128 LNVQAAHLLHADRVGFDALLRE 149

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  124 bits (313), Expect = 1e-36
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+  D+ +L  +  E   +        L  F V    P    Y+ G +    ++P  YP 
Sbjct: 29  RMDTDVIKLIESKHEVTIL------GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 82

Query: 90  DAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTI-IYGLYHLFTEPNHEDPLN 147
            +P +    K++HPNID   G VCL+V+ + W  + ++  I    L  L   PN  DPLN
Sbjct: 83  KSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLN 142

Query: 148 HDAAELLRDSPACFETNVRM 167
            DAA +    P  ++  ++ 
Sbjct: 143 GDAAAMYLHRPEEYKQKIKE 162

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  124 bits (312), Expect = 2e-36
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 26  KQCARELRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFE 82
               +  R H                    G  D+  +   I  P    Y+ G F     
Sbjct: 42  ADIQQLQRAHDSEPAATHSTSHGVSA-QIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIV 99

Query: 83  VPPIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPN 141
           +PP YP++ PK+K  TK++HPNI  + G +CL++L+ +W P L I T +  +  +  +P 
Sbjct: 100 IPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPV 159

Query: 142 HEDPLNHDAAELLRDSPACFETNVRM 167
             DP + + A+++ ++   F    ++
Sbjct: 160 PTDPQDAEVAKMMIENHPLFVQTAKL 185

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  122 bits (309), Expect = 4e-36
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL +D   +  + P       P   D++M +   I  P +  Y++GTF    E    YP+
Sbjct: 8   RLMRDFKRMKEDAPPGVSA-SPLP-DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPN 65

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             P VK  ++++HPN+   G +CL++L+  W P  ++ +I+  +  LF +PN   P N +
Sbjct: 66  KPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 125

Query: 150 AAELLRDSPACFETNVR 166
           AA L +D  + +   V+
Sbjct: 126 AATLFKDHKSQYVKRVK 142

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  119 bits (300), Expect = 5e-35
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++  +   + P       +   +G  DL  +E  I   +   +  G +  + E P  
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHED 144
           YP   PKVK     YHPN+   G +CL++L E  DW+P + +  I+ G+  L   PN   
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127

Query: 145 PLNHDAAELLRDSPACFETNVR 166
           P    A      + A ++  V 
Sbjct: 128 PAQEPAWRSFSRNKAEYDKKVL 149

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  119 bits (300), Expect = 6e-35
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++      + P          P+G  +LMN+E +I       ++ G F         
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHED 144
           YP   PK K +  ++HPN+   G VCL++L E  DW+P + I  I+ G+  L  EPN + 
Sbjct: 71  YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQS 130

Query: 145 PLNHDAAELLRDSPACFETNVR 166
           P   +A  +   +   +E  VR
Sbjct: 131 PAQAEAYTIYCQNRVEYEKRVR 152

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  119 bits (299), Expect = 1e-34
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 33  RLHKDITEL-----------NLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVF 79
           R+ K+   +           N       S  P  + DL  +E  I  P +  Y+N  F  
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69

Query: 80  SFEVPPIYPHDAPKVK-CKTKVYHPNIDLE-GNVCLNVLRED-WKPVLNINTIIYGLYHL 136
             EVP  YP + PK+   +  + H N+    G +CLN+L+ + W PV ++   ++ ++ L
Sbjct: 70  LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129

Query: 137 FTEPNHEDPLNHDAAELLRDS-PACFETNVRM 167
             EP  + PL+ D   ++R    + ++  V+ 
Sbjct: 130 LREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  118 bits (298), Expect = 1e-34
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            LH+D  +L  N  +      P   +D+M +EV I+      +Q   F  +      Y +
Sbjct: 27  LLHRDFCDLKENNYKGITA-KPVS-EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84

Query: 90  DAPKVKCKTKVYHPNIDLE-GNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
             P VK  T  +HPN+D   G  C++ L   E W     +++I+  L  + + P  E+P+
Sbjct: 85  APPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPV 144

Query: 147 NHDAAELLRDSPACFETNVRM 167
           N +AA +L    + + T +R+
Sbjct: 145 NLEAARILVKDESLYRTILRL 165

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  118 bits (297), Expect = 2e-34
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           RL ++  +   + P           +G  DLMN++V I    +  ++ G +  +   P  
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHED 144
           YP   PK +    ++HPN+   G VCL++L E+  WKP + I  I+ G+  L  +PN   
Sbjct: 74  YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS 133

Query: 145 PLNHDAAELLRDSPACFETNVR 166
           P   +A  + +     +E  VR
Sbjct: 134 PAQTEAYTMFKKDKVEYEKRVR 155

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  117 bits (294), Expect = 5e-34
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 17/150 (11%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL  +  +L  N PE      P  +++   +E  I  P++  ++ G F      P  YP 
Sbjct: 7   RLMAEYKQLTLNPPEGIVA-GPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHL 136
             PK++   +++HPNI  +G VC+++L              E W PV ++  I+  +  +
Sbjct: 66  SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125

Query: 137 FTEPNHEDPLNHDAAELLRDSPACFETNVR 166
             EPN E   N DA+++ RD    F    +
Sbjct: 126 LAEPNDESGANVDASKMWRDDREQFYKIAK 155

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  122 bits (308), Expect = 7e-34
 Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+HK++ +L  + P  C    P G DD+ +++ +I  P++  YQ G F  +   P  YP 
Sbjct: 7   RIHKELNDLARDPPAQCSA-GPVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PKV   T++YHPNI+  G++ L++LR  W P L I+ ++  +  L  +PN +DPL  +
Sbjct: 65  KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124

Query: 150 AAELLRDSPACFETNVR 166
            A + +     +    R
Sbjct: 125 IARIYKTDREKYNRIAR 141

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  114 bits (288), Expect = 6e-33
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 18/152 (11%)

Query: 32  LRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYP 88
           L L + + ELN    E          +DL  +EV I  P +  Y+ G F      P  YP
Sbjct: 20  LLLRRQLAELNKNPVEGFSA-GLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 78

Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTIIYGLYH 135
              PK+K  T+++HPN+D  G+VC+++L              E W P+  + TI+  +  
Sbjct: 79  LRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 138

Query: 136 LFTEPNHEDPLNHDAAELLR-DSPACFETNVR 166
           +  +PN + P N DAA+  R D    F+  V 
Sbjct: 139 MLADPNGDSPANVDAAKEWREDRNGEFKRKVA 170

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  113 bits (285), Expect = 1e-32
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++ +L  + P       P  ++++  ++  I+ P +  Y +G F    E P  YP 
Sbjct: 8   RLLKELQQLIKDSPPGIVA-GPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHL 136
             PK+     + HPNI   G VC+++L              E W PV ++  I+  +  +
Sbjct: 67  SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126

Query: 137 FTEPNHEDPLNHDAAELLRDSPACFETNVR 166
            +EPN E   N DA  L RD+   FE  V+
Sbjct: 127 LSEPNIESGANIDACILWRDNRPEFERQVK 156

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  113 bits (284), Expect = 3e-32
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
            L  ++  L     E  ++     + DL N+EV+I  P   YY+ G F    + P  YP+
Sbjct: 11  ALLLELKGLQEEPVEGFRV-TLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHL 136
             P  +  TK++HPNI   G+VC+++L              E W P  N+ TI+  +  L
Sbjct: 70  SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 129

Query: 137 FTEPNHEDPLNHDAAELLRDSPACFET 163
             EPN   P N DA+ + R        
Sbjct: 130 LNEPNTFSPANVDASVMYRKWKESKGK 156

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  106 bits (266), Expect = 5e-30
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDD--LMNFEVSIK-PDEGYYQNGTFVFSFEV 83
            R  RL +++ +                 DD  +  +  +I  P    ++N  +  S + 
Sbjct: 6   PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 65

Query: 84  PPIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPN 141
            P YP   PKV   +K+  P ++   G V  +     DWK    + T++  L      P 
Sbjct: 66  GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPA 125

Query: 142 HEDPLNHDAAEL 153
           ++        E 
Sbjct: 126 NKKLRQPKEGET 137

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  105 bits (264), Expect = 2e-29
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 30  RELRLHKDITEL--NLPEACKISFPNGQDD---LMNFEVSIK-PDEGYYQNGTFVFSFEV 83
           R  RL +++ E    + +   +S+    D+   L  +   I  P    Y+N  +    E 
Sbjct: 26  RNFRLLEELEEGQKGVGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 84

Query: 84  PPIYPHDAPKVKCKTKVYHPNIDLEGNV----CLNVLREDWKPVLNINTIIYGLYHLFTE 139
            P YP   P V+  TK+    ++    V     ++VL   W+   +I  ++  L  L   
Sbjct: 85  GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMS 143

Query: 140 PNHEDPLNHDAAELLRD 156
             +         +   +
Sbjct: 144 KENMKLPQPPEGQCYSN 160

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  104 bits (261), Expect = 2e-29
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++     N P  C +   +  +++  + V     +   Y N  +      P  YP 
Sbjct: 10  RIQKELHNFLNNPPINCTL-DVHP-NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 67

Query: 90  DAPKVKCKTK-VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
             P V    K   H ++   G++CL++L +D+ P L+I+ ++  +  + +    + 
Sbjct: 68  KPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  103 bits (258), Expect = 7e-29
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++     N P  C I   +   ++  + V     +   Y N  +      P  YP 
Sbjct: 24  RIQKELNNFLKNPPINCTI-DVHP-SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81

Query: 90  DAPKVKCKTK-VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE 143
             P V    K   H ++   G++CL+VL +D+ P L+I+ +I  +  + +    +
Sbjct: 82  KPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  103 bits (259), Expect = 1e-28
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 30  RELRLHKDITELNL-PEACKISFPNGQDD---LMNFEVSIK-PDEGYYQNGTFVFSFEVP 84
           R  RL +++ E         +S+    D+   L  +   I  P    Y+N  +    E  
Sbjct: 36  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95

Query: 85  PIYPHDAPKVKCKTKVYHPNIDLEGNV----CLNVLREDWKPVLNINTIIYGLYHLFTEP 140
           P YP   P V+  TK+    ++    V     ++VL   W+   +I  ++  L  L    
Sbjct: 96  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSK 154

Query: 141 NHEDPLNHDAAELLRD 156
            +         +   +
Sbjct: 155 ENMKLPQPPEGQCYSN 170

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  102 bits (256), Expect = 1e-28
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 14  DAENNTGGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEG 70
              +++G  P     + + RL K++  L  + P    ++  + Q+ +  + V ++     
Sbjct: 7   HHHHSSGLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGT 66

Query: 71  YYQNGTFVFSFEVPPIYPHDAPKVK--CKTKVYHPNIDLEGNVCLNVLREDWKPVLNINT 128
            Y+   F   F+    YP D+P+V    +    HP++   G++CL++L EDW P L++ +
Sbjct: 67  LYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQS 126

Query: 129 I 129
           +
Sbjct: 127 V 127

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 98.2 bits (245), Expect = 1e-26
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 19  TGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQD-DLMNFEVSIK-PDEGYYQNGT 76
            G  P   +   EL   +   + N+ E       +  D  L N+  +I       ++N  
Sbjct: 17  QGIVPRSFRLLDEL---ERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRI 73

Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL--REDWKPVLNINTIIYGLY 134
           +  +      YP   P VK  TK+    +D  G V  N L   ++W     I TI+  L 
Sbjct: 74  YSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLR 133

Query: 135 H-LFTEPNHEDPLNHDAAELLRD 156
             + +  N   P  ++      +
Sbjct: 134 QEMLSSANKRLPQPNEGEVYSNN 156

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 85.8 bits (212), Expect = 1e-21
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 18/166 (10%)

Query: 6   KVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI 65
                    +   +G      +  +EL   +DI      +    S     D L ++ V +
Sbjct: 10  HSSGLVPRGSGAVSGSVQASDRLMKEL---RDIYRSQSYKTGIYSVELINDSLYDWHVKL 66

Query: 66  K---PDEGYYQN----------GTFVFSFEVPPIYPHDAPKVKCKTKVYHPN-IDLEGNV 111
           +   PD   + +             + +F     +P D P V+    V     +   G +
Sbjct: 67  QKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 126

Query: 112 CLNVLRED-WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
           C+ +L +  W    +I ++I  +     +         +  +    
Sbjct: 127 CMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA 172

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 83.7 bits (207), Expect = 1e-20
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 8/134 (5%)

Query: 17  NNTGGTPVKKQCARELRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIK-PDEGYYQ 73
           ++T          +  RL +D   +          + P    +++ +   ++ P+   Y+
Sbjct: 4   SSTSSKRAPTTATQ--RLKQDYLRIKKDPVPYI-CAEPLP-SNILEWHYVVRGPEMTPYE 59

Query: 74  NGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV-CLNVLREDWKPVLNINTIIYG 132
            G +      P  +P   P +   T       +    +   +   + W P  +++TI+ G
Sbjct: 60  GGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTG 119

Query: 133 LYHLFTEPNHEDPL 146
           L     E       
Sbjct: 120 LLSFMVEKGPTLGS 133

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 75.5 bits (185), Expect = 8e-17
 Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 29  ARELRLHKDITEL--NLPEACK--ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEV 83
           AR  RL ++   L  +LP +    +     ++ L   +V I  P +  Y NG F F    
Sbjct: 76  ARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYF 135

Query: 84  PPIYPHDAPKVKCKTKVYH-----PNIDLEGNVCLNVLR-------EDWKP----VLNIN 127
           P  YP   P V  +T   H     PN+  +G VCL++L        E W P     L + 
Sbjct: 136 PQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVL 195

Query: 128 TIIYGLYHLFTEPNHEDPL--NHDAAELLRDSPACFETNVR 166
             +  L  L  EP   +P             S   ++ N+R
Sbjct: 196 VSVQSLI-LVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 235

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 51  FPNGQDDLMNFEVSIKPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTK-----VYHP 103
           +  G  +LMN   +I      Y+  T+       +   YP++ P    K           
Sbjct: 46  YGTGSRELMNLTGTI---PVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK 102

Query: 104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139
           ++D  G + L  L E   P  ++  +I  +  +F +
Sbjct: 103 HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.91
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.78
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.7
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.49
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	97.08
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.99
1tt5_E	26	Ubiquitin-conjugating enzyme E2 M; cell cycle, lig	95.29
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.27
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	95.27
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	94.52
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.33
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	93.27
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	92.75

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=5.2e-52  Score=325.62  Aligned_cols=180  Identities=41%  Similarity=0.834  Sum_probs=169.2

Q ss_pred             CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEec---cCCCCCce---EEEEEEeCCCCCCCC
Q 030112            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISF---PNGQDDLM---NFEVSIKPDEGYYQN   74 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~---~~~~~n~~---~w~~~igp~~tpyeg   74 (183)
                      ||++++++++++++..+++  ++++..+++.+||++||++++.++++.+.+   ++ ++|++   +|+++|+|++|||+|
T Consensus         3 m~~l~~~~~~~~~~~~~~~--~~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~-~~nl~~~~~w~~~I~p~~tpyeg   79 (190)
T 3o2u_A            3 MLKLRQLQKKKQKENENSS--SIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNY   79 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--SSSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTT-CCCTTSCCEEEEEECCSSSTTTT
T ss_pred             hHHHHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHhccCCCCEEEEecCCCC-CccCCcCCeEEEEEcCCCCCCCC
Confidence            7889999999988877653  566788899999999999998778888864   66 78999   999999888899999


Q ss_pred             cEEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHH
Q 030112           75 GTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL  154 (183)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~  154 (183)
                      |+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.|||++|
T Consensus        80 g~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~  159 (190)
T 3o2u_A           80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL  159 (190)
T ss_dssp             CCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCHHHHHHHHHHHHhcCCCCCcccCCCC
Q 030112          155 RDSPACFETNVRMALQGGYIGDEYFEPVM  183 (183)
Q Consensus       155 ~~~~~~f~~~~r~~~~~~~~~~~~~~~~~  183 (183)
                      ++|+++|.++||+|+++++..+..|++++
T Consensus       160 ~~d~~~f~~~ar~~~~~~~~~~~~~~~~~  188 (190)
T 3o2u_A          160 CEGEKEFAEAVRLTMSGGSIEHVKYDNIV  188 (190)
T ss_dssp             HTCHHHHHHHHHHHHBTCEETTEECCBCC
T ss_pred             HHCHHHHHHHHHHHHHhcCCCCccccccc
Confidence            99999999999999999999999999986

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-52  Score=324.31  Aligned_cols=177  Identities=61%  Similarity=1.092  Sum_probs=162.9

Q ss_pred             CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEE
Q 030112            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS   80 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~   80 (183)
                      ||.++++++++++++.+     +.++.+.+.+||++|+++++.++++.+.+++ ++|+++|+++|||++|||+||+|+++
T Consensus         3 m~~~~~~~~~~~~~~~~-----~~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~-~~nl~~W~~~igP~~tpYegg~f~~~   76 (180)
T 2nvu_C            3 MIKLFSLKQQKKEEEKG-----SSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFS   76 (180)
T ss_dssp             --CCCCCCCSCCCCCCS-----CCCSCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCCSGGGTTBCEEEE
T ss_pred             hHHHHHHHHHHHhhhhc-----ccCCccHHHHHHHHHHHhcCCCCCeEEEecc-cccccceEEEECCCCCCCCCCEEEEE
Confidence            78899997777544432     2456788999999999999888888887666 78999999999999999999999999


Q ss_pred             EEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHH
Q 030112           81 FEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAC  160 (183)
Q Consensus        81 i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~  160 (183)
                      |.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++
T Consensus        77 i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~  156 (180)
T 2nvu_C           77 FKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRL  156 (180)
T ss_dssp             EECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHH
T ss_pred             EeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCC
Q 030112          161 FETNVRMALQGGYIGDEYFEPVM  183 (183)
Q Consensus       161 f~~~~r~~~~~~~~~~~~~~~~~  183 (183)
                      |.++||+++++++.++.+|++++
T Consensus       157 f~~~v~~~v~~~~~~~~~~~~~~  179 (180)
T 2nvu_C          157 FEQNVQRSMRGGYIGSTYFERCL  179 (180)
T ss_dssp             HHHHHHHHHHSEEETTEEECCCB
T ss_pred             HHHHHHHHHhhCCcCccccchhc
Confidence            99999999999999999999985

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-49  Score=304.17  Aligned_cols=157  Identities=64%  Similarity=1.148  Sum_probs=150.7

Q ss_pred             cchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           26 KQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      +++.+.+||++|++++++++++.+.+++ ++|+++|+++|||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (160)
T 1y8x_A            3 MASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   81 (160)
T ss_dssp             SCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cccHHHHHHHHHHHhcCCCCCeEEEecc-CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence            4567899999999999888888887666 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcccCCCC
Q 030112          106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM  183 (183)
Q Consensus       106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~~~~~~  183 (183)
                      +.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+++++++..+.+|++++
T Consensus        82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~~~~~~~~~~  159 (160)
T 1y8x_A           82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL  159 (160)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCB
T ss_pred             CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCccCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-48  Score=296.06  Aligned_cols=150  Identities=28%  Similarity=0.504  Sum_probs=141.1

Q ss_pred             CCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           22 TPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      ++.+++..+.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   83 (158)
T 1zdn_A            6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT   83 (158)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEecc
Confidence            45567888999999999999  667888875 55 78999999999 999999999999999999999999999999999


Q ss_pred             cccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112           99 KVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus        99 ~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      ++|||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++
T Consensus        84 ~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           84 KIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             CCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998875

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.1e-47  Score=291.30  Aligned_cols=146  Identities=34%  Similarity=0.680  Sum_probs=139.2

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ++.+.+||++|++++  +.+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   79 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAG-PV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHP   79 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccc
Confidence            467899999999999  677888876 55 68999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      ||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++.
T Consensus        80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~  150 (151)
T 4gpr_A           80 NINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR  150 (151)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             eECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.5e-47  Score=290.74  Aligned_cols=148  Identities=26%  Similarity=0.617  Sum_probs=139.1

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      |++.+.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGA-PQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH   78 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            3457899999999999  567787775 55 78999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      |||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus        79 Pnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             TTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.2e-48  Score=296.48  Aligned_cols=148  Identities=28%  Similarity=0.628  Sum_probs=139.7

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ++.+.+||++|+++|  +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus         2 s~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP   79 (169)
T 1ayz_A            2 STPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP   79 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEE-ec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence            457899999999999  667788775 55 78999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      ||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++++..+
T Consensus        80 NI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~  152 (169)
T 1ayz_A           80 NVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD  152 (169)
T ss_dssp             TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988543

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-47  Score=293.14  Aligned_cols=146  Identities=31%  Similarity=0.678  Sum_probs=137.8

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      ..+.+.+||++|++++  +.++++.+. +. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           18 YFQGALKRINKELNDLSKDPPTNCSAG-PV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             -CTTHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            3456889999999999  667888875 55 68999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++
T Consensus        96 PNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           96 PNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6e-48  Score=293.56  Aligned_cols=145  Identities=32%  Similarity=0.585  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   82 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   82 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence            4579999999999  667888875 55 67999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      +.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus        83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             CTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998864

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-47  Score=292.35  Aligned_cols=148  Identities=29%  Similarity=0.571  Sum_probs=137.9

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      |++.+.+||++|+++|  +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   79 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence            3467899999999999  567788876 44357999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccc-------------cCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112          103 PNIDLEGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL  169 (183)
Q Consensus       103 pnV~~~G~vcl~~l-------------~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~  169 (183)
                      |||+.+|.||+++|             .++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+
T Consensus        80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~  159 (165)
T 2ucz_A           80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI  159 (165)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999             57899999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC
Q 030112          170 QGGYI  174 (183)
Q Consensus       170 ~~~~~  174 (183)
                      +++..
T Consensus       160 ~~~~~  164 (165)
T 2ucz_A          160 LKSLG  164 (165)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            98753

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=7.8e-47  Score=290.32  Aligned_cols=146  Identities=31%  Similarity=0.690  Sum_probs=138.6

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      ..+.+.+||++|++++  +.++++.+. +. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           16 RGSMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence            4567899999999999  567788775 55 68999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||.+|++|+++|+++||+|+.+++
T Consensus        94 PnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a  164 (165)
T 2c4o_A           94 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA  164 (165)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999886

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=4.7e-47  Score=287.45  Aligned_cols=144  Identities=32%  Similarity=0.680  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112           28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN  104 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn  104 (183)
                      ..+.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            45789999999999  667788775 55 58999999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  149 (150)
T 1z2u_A           81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  149 (150)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999876

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=6e-47  Score=290.77  Aligned_cols=146  Identities=28%  Similarity=0.552  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112           28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN  104 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn  104 (183)
                      +++.+||++|++++  +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAG-PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence            46899999999999  667888885 55356999999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112          105 IDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG  171 (183)
Q Consensus       105 V~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  171 (183)
                      |+.+|.||+++|.             ++|+|++||++||.+|+++|.+|++++|+|.|||.+|++|+++|+++||+|+++
T Consensus        81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~  160 (164)
T 3h8k_A           81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999996             789999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 030112          172 GYI  174 (183)
Q Consensus       172 ~~~  174 (183)
                      +..
T Consensus       161 s~~  163 (164)
T 3h8k_A          161 SLG  163 (164)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            753

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-47  Score=289.94  Aligned_cols=147  Identities=27%  Similarity=0.574  Sum_probs=137.9

Q ss_pred             CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112           25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY  101 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~  101 (183)
                      .+++.+.+||++|++++  +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus         5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (156)
T 2e2c_A            5 KERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW   82 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence            34567889999999999  467787775 55 67999999999 999999999999999999999999999999999999


Q ss_pred             ccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          102 HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       102 HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      ||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++| +|+++|+++||+|+++++.
T Consensus        83 HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A           83 HPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999 8999999999999998764

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-46  Score=289.98  Aligned_cols=148  Identities=29%  Similarity=0.566  Sum_probs=140.1

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ++++.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHP   79 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccc
Confidence            467899999999999  667788876 55 68999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceeccccc----CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          104 NIDLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       104 nV~~~G~vcl~~l~----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      ||+.+|.||+++|.    ++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++..+
T Consensus        80 Nv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  156 (169)
T 1yh2_A           80 NIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK  156 (169)
T ss_dssp             TBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence            99999999999998    89999999999999999999999999999999999999999999999999999998653

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=9.9e-47  Score=290.36  Aligned_cols=152  Identities=41%  Similarity=0.774  Sum_probs=141.3

Q ss_pred             CCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           21 GTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        21 ~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      +++.+..+.+.+||++|++++  +.++++.+..++ ++|++.|+++|||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   84 (167)
T 3fn1_B            6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT   84 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSS-SSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred             CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence            456678899999999999999  467788887444 78999999999999999999999999999999999999999999


Q ss_pred             cccccCccCCCceecccccC------cccCCccHHhHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112           99 KVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTE-PNHEDPLNHDAAELLRDSPACFETNVRMALQG  171 (183)
Q Consensus        99 ~i~HpnV~~~G~vcl~~l~~------~W~p~~~i~~iL~~i~~ll~~-p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  171 (183)
                      +||||||+.+|.||+++|..      +|+|+++|.+||.+|+++|.+ |++++|+|.|||.+|++|+++|.++||+|+++
T Consensus        85 ~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  164 (167)
T 3fn1_B           85 KIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR  164 (167)
T ss_dssp             CCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999975      799999999999999999999 69999999999999999999999999999998


Q ss_pred             CC
Q 030112          172 GY  173 (183)
Q Consensus       172 ~~  173 (183)
                      ++
T Consensus       165 ~A  166 (167)
T 3fn1_B          165 YA  166 (167)
T ss_dssp             HC
T ss_pred             hc
Confidence            76

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.1e-46  Score=285.15  Aligned_cols=143  Identities=31%  Similarity=0.588  Sum_probs=136.3

Q ss_pred             HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      .+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   80 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAV-PV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK   80 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC
Confidence            58999999999  677788875 55 68999999999 999999999999999999999999999999999999999999


Q ss_pred             CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          108 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       108 ~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus        81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998754

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-46  Score=288.07  Aligned_cols=148  Identities=27%  Similarity=0.578  Sum_probs=136.6

Q ss_pred             CcchHHHHHHHHHHhhc--CCCCCceEeccCCC-C---CceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           25 KKQCARELRLHKDITEL--NLPEACKISFPNGQ-D---DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~-~---n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      ..+.+|.+||++|++++  ++++++.+. +... +   |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~-p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~   84 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAK-PCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT   84 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEE-EccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence            45788999999999999  778888875 4412 2   899999999 99999999999999999999999999999999


Q ss_pred             ccccccCccCCCceecccccCc--ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112           98 TKVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus        98 t~i~HpnV~~~G~vcl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |+||||||+.+|.||+++|...  |+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++
T Consensus        85 t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya  162 (163)
T 3rcz_B           85 PPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA  162 (163)
T ss_dssp             SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             CCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999754  999999999999999999999999999999999999999999999999999986

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.6e-46  Score=287.06  Aligned_cols=148  Identities=22%  Similarity=0.504  Sum_probs=138.6

Q ss_pred             CcchHHHHHHHHHHhhcC-----CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           25 KKQCARELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l~-----~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      .|++.+.+||++|+++|.     .++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   81 (159)
T 2bep_A            4 AMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT   81 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC
Confidence            356678999999999993     26677775 55 57999999999 999999999999999999999999999999999


Q ss_pred             cccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112           99 KVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus        99 ~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      +||||||+. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++.
T Consensus        82 ~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           82 KIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             CCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            999999996 9999999999999999999999999999999999999999999999999999999999999999875

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-46  Score=292.36  Aligned_cols=148  Identities=30%  Similarity=0.561  Sum_probs=136.6

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      +++.+.+||++||++|  +.++++.+. +. .+|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  104 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH  104 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence            5677899999999999  557788775 55 67999999999 9999999999999999999999999999999999999


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      |||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++| +|+++|.++|+++++++..+.
T Consensus       105 PNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~  177 (179)
T 1i7k_A          105 PNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ  177 (179)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred             CccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999987654

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=6.8e-47  Score=286.31  Aligned_cols=143  Identities=27%  Similarity=0.545  Sum_probs=135.5

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.+||++|++++  +.++++.+. +...+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~-~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~   80 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEE-ESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence            469999999999  667888886 55345999999999 99999999999999999999999999999999999999999


Q ss_pred             C-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          107 L-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       107 ~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      . +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++
T Consensus        81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a  148 (149)
T 1fxt_A           81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred             CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9 999999999999999999999999999999999999999999999999999999999999999876

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=4.3e-47  Score=289.15  Aligned_cols=146  Identities=33%  Similarity=0.585  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      .+.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   82 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI   82 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence            3569999999999  667888875 55 68999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      +.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++...
T Consensus        83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~  153 (155)
T 1jat_A           83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK  153 (155)
T ss_dssp             CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred             CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988654

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=3.5e-46  Score=284.65  Aligned_cols=146  Identities=27%  Similarity=0.521  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      ++.+.+||++|++++  +.++++.+. +.    +.+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus         2 s~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            2 SSLCLQRLQEERKKWRKDHPFGFYAK-PVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             -CHHHHHHHHHHHHHHHCCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            457889999999999  677888775 33    125899999999 9999999999999999999999999999999999


Q ss_pred             ccccCccCCCceecccccC--cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          100 VYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       100 i~HpnV~~~G~vcl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      ||||||+.+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus        81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a  156 (157)
T 2gjd_A           81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS  156 (157)
T ss_dssp             CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred             CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9999999999999999987  7999999999999999999999999999999999999999999999999999886

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=4.2e-46  Score=292.74  Aligned_cols=145  Identities=27%  Similarity=0.590  Sum_probs=138.4

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ++.+.+||++||++|  +.++++.+. +. .+|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        46 ~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  123 (194)
T 3bzh_A           46 LSTSAKRIQKELADITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC  123 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCceee-cc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccc
Confidence            477899999999999  667788875 55 68999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      ||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+.+++
T Consensus       124 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya  193 (194)
T 3bzh_A          124 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA  193 (194)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             eECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=6.5e-46  Score=284.23  Aligned_cols=148  Identities=28%  Similarity=0.500  Sum_probs=138.3

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      |++.+.+||++|+++|  +.++++.+. +.    +.+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAV-PTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            5678899999999999  667787775 32    236899999999 999999999999999999999999999999999


Q ss_pred             cccccCccCCCceecccccC--cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112           99 KVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus        99 ~i~HpnV~~~G~vcl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      ++|||||+.+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.|||.+|++|+++|.++||+++++++.
T Consensus        83 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           83 PLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999976  79999999999999999999999999999999999999999999999999999875

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=5.5e-46  Score=291.79  Aligned_cols=147  Identities=24%  Similarity=0.505  Sum_probs=133.9

Q ss_pred             cchHHHHHHHHHHhhc--CCC-------------CCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCC
Q 030112           26 KQCARELRLHKDITEL--NLP-------------EACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH   89 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~-------------~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~   89 (183)
                      ....+.+||++|+++|  +.+             .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||+
T Consensus        29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~  106 (193)
T 2f4z_A           29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY  106 (193)
T ss_dssp             ---CHHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-Ec-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence            4556889999999999  333             577775 44 57999999999 999999999999999999999999


Q ss_pred             CCCceeEeccccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 030112           90 DAPKVKCKTKVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMA  168 (183)
Q Consensus        90 ~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~  168 (183)
                      +||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|
T Consensus       107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~  186 (193)
T 2f4z_A          107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW  186 (193)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999999995 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCC
Q 030112          169 LQGGYI  174 (183)
Q Consensus       169 ~~~~~~  174 (183)
                      +++++.
T Consensus       187 t~~ya~  192 (193)
T 2f4z_A          187 TETFAK  192 (193)
T ss_dssp             HHHHCC
T ss_pred             HHHHcc
Confidence            999874

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=5.8e-46  Score=296.14  Aligned_cols=151  Identities=26%  Similarity=0.556  Sum_probs=141.0

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      +.+.+.+||++|++++  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           20 QGSKELLRLQKELKDIENENVQEIDAH-IK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCTTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            4677899999999999  667788876 55 67999999999 9999999999999999999999999999999999999


Q ss_pred             cCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcc
Q 030112          103 PNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY  178 (183)
Q Consensus       103 pnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~  178 (183)
                      |||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+++.....
T Consensus        98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~  174 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKE  174 (216)
T ss_dssp             TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC--
T ss_pred             CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcc
Confidence            99995 89999999999999999999999999999999999999999999999999999999999999999976553

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.2e-45  Score=281.18  Aligned_cols=147  Identities=28%  Similarity=0.555  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      .+.+||++|++++  +.++++.+..++ ++|+++|+++|.|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~-~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSD-DANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEEC-SSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecC-CCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            4789999999999  567787774455 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceecccc-cCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          107 LEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       107 ~~G~vcl~~l-~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      .+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+++.+++...
T Consensus        83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A           83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999 899999999999999999999999999999999999999999999999999999988644

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-45  Score=284.87  Aligned_cols=146  Identities=25%  Similarity=0.441  Sum_probs=136.0

Q ss_pred             CCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112           23 PVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        23 ~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      ...|++.+.+||++|+++|  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus        17 ~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           17 RGSMHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             TTGGGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             cCccChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence            3457778999999999999  567788775 66 68999999999 9999999999999999999999999999999999


Q ss_pred             ccccCc-cCCCceeccccc--CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112          100 VYHPNI-DLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG  171 (183)
Q Consensus       100 i~HpnV-~~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  171 (183)
                      |||||| +.+|.||+++|.  ++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|+++ |++|++
T Consensus        95 i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           95 PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            999999 779999999998  89999999999999999999999999999999999999999999998 998864

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=1.6e-45  Score=291.25  Aligned_cols=150  Identities=22%  Similarity=0.493  Sum_probs=138.5

Q ss_pred             cchHHHHHHHHHHhhcCC-----CCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112           26 KQCARELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      |++.+.+||++|++++..     +.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            455689999999999932     4677775 55 67999999999 9999999999999999999999999999999999


Q ss_pred             ccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112          100 VYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE  177 (183)
Q Consensus       100 i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~  177 (183)
                      ||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+|+....
T Consensus        80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~  158 (201)
T 3k9o_A           80 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV  158 (201)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
T ss_pred             cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence            99999996 9999999999999999999999999999999999999999999999999999999999999999986643

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.5e-45  Score=287.48  Aligned_cols=146  Identities=31%  Similarity=0.581  Sum_probs=136.8

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      ++++.+||++||+++  +.++++.+..++ ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~-~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   83 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVTLVD-EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP   83 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEECT-TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEecC-ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence            457899999999999  677888886455 78999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHh------CHHHHHHH
Q 030112          104 NIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD------SPACFETN  164 (183)
Q Consensus       104 nV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~------~~~~f~~~  164 (183)
                      ||+.+|.||+++|.             ++|+|+++|++||.+|+++|.+|++++|+|.|||.+|++      |+++|+++
T Consensus        84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~  163 (183)
T 3rz3_A           84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDI  163 (183)
T ss_dssp             TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHH
Confidence            99999999999996             789999999999999999999999999999999999999      78999999


Q ss_pred             HHHHHhcCC
Q 030112          165 VRMALQGGY  173 (183)
Q Consensus       165 ~r~~~~~~~  173 (183)
                      ||+++.++.
T Consensus       164 v~~~v~~s~  172 (183)
T 3rz3_A          164 IRKQVLGTK  172 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998865

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=9e-46  Score=294.84  Aligned_cols=148  Identities=27%  Similarity=0.528  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++.+||++|++++  +.++++.+. +...+++++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~-p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI   80 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI   80 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEEC-CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence            4679999999999  667788885 55345678999999 9999999999999999999999999999999999999999


Q ss_pred             cC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112          106 DL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE  177 (183)
Q Consensus       106 ~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~  177 (183)
                      +. +|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+.+++...+
T Consensus        81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~  153 (215)
T 1tte_A           81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETS  153 (215)
T ss_dssp             CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCS
T ss_pred             cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCC
Confidence            99 9999999999999999999999999999999999999999999999999999999999999999996543

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.1e-45  Score=285.58  Aligned_cols=143  Identities=31%  Similarity=0.586  Sum_probs=106.8

Q ss_pred             CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112           25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY  101 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~  101 (183)
                      ..++.+.+||++|+++|  +.++++.+. +..++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus        13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~-p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~   91 (172)
T 2awf_A           13 GLVPRGSLLLRRQLAELNKNPVEGFSAG-LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW   91 (172)
T ss_dssp             CCCCTTHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence            35678899999999999  677888876 44357999999999 999999999999999999999999999999999999


Q ss_pred             ccCccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHH-HHHHHHHH
Q 030112          102 HPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPA-CFETNVRM  167 (183)
Q Consensus       102 HpnV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~-~f~~~~r~  167 (183)
                      ||||+.+|.||+++|.             ++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|++ +|+++||+
T Consensus        92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~  171 (172)
T 2awf_A           92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR  171 (172)
T ss_dssp             CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred             cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence            9999999999999996             689999999999999999999999999999999999999999 99999998


Q ss_pred             H
Q 030112          168 A  168 (183)
Q Consensus       168 ~  168 (183)
                      |
T Consensus       172 ~  172 (172)
T 2awf_A          172 C  172 (172)
T ss_dssp             -
T ss_pred             C
Confidence            6

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=5.4e-45  Score=296.45  Aligned_cols=154  Identities=21%  Similarity=0.492  Sum_probs=141.9

Q ss_pred             CCCCcchHHHHHHHHHHhhc--C---CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcee
Q 030112           22 TPVKKQCARELRLHKDITEL--N---LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVK   95 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l--~---~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~   95 (183)
                      ++..+++.+.+||++||++|  +   .+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+
T Consensus        50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~  127 (253)
T 3e46_A           50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR  127 (253)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeee
Confidence            34456788999999999999  2   25677775 55 68999999999 999999999999999999999999999999


Q ss_pred             EeccccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112           96 CKTKVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus        96 f~t~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      |.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+|+.
T Consensus       128 F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~  207 (253)
T 3e46_A          128 FITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  207 (253)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            999999999996 9999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCc
Q 030112          175 GDE  177 (183)
Q Consensus       175 ~~~  177 (183)
                      ...
T Consensus       208 ~~~  210 (253)
T 3e46_A          208 APV  210 (253)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3.3e-45  Score=278.44  Aligned_cols=148  Identities=32%  Similarity=0.519  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      ++.+||++|++++  +.++++.+. +..++|+++|+++|+|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   80 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   80 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEe-eCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence            3568999999999  445666653 4337899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112          107 LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE  177 (183)
Q Consensus       107 ~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~  177 (183)
                      .+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.+++....
T Consensus        81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~~  152 (154)
T 1c4z_D           81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP  152 (154)
T ss_dssp             TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-----
T ss_pred             CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccCC
Confidence            99999999996 789999999999999999999999999999999999999999999999999999986543

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=5e-46  Score=282.36  Aligned_cols=146  Identities=29%  Similarity=0.515  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      ++.+||++|++++.. .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus         2 sa~~Rl~kEl~~l~~-~~~~v~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~   78 (152)
T 2onu_A            2 TSLTRKQCDFTKLIM-AGYDLE-LN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE   78 (152)
T ss_dssp             -CCCHHHHTHHHHHH-HTCCEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             hHHHHHHHHHHhcCc-CCCEEE-Ec-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence            356899999999943 467775 44 68999999999 999999999999999999999999999999999999999996


Q ss_pred             -CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112          108 -EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE  177 (183)
Q Consensus       108 -~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~  177 (183)
                       +|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.|||++|++|+++|+++||+++.+++...+
T Consensus        79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~  150 (152)
T 2onu_A           79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL  150 (152)
T ss_dssp             TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred             cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence             9999999999999999999999999 689999999999999999999999999999999999999987554

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=8.5e-45  Score=280.71  Aligned_cols=149  Identities=26%  Similarity=0.470  Sum_probs=135.0

Q ss_pred             cchHHHHHHHHHHhhcCC----C-----CC---ceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112           26 KQCARELRLHKDITELNL----P-----EA---CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l~~----~-----~~---~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP   92 (183)
                      |++.+.+||++|+++++.    +     +.   +....+..++|+++|+++| ||++|||+||+|+++|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            567899999999999942    2     33   2223463378999999999 999999999999999999999999999


Q ss_pred             ceeEec-cccccCcc-CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHHHH
Q 030112           93 KVKCKT-KVYHPNID-LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD-SPACFETNVRMA  168 (183)
Q Consensus        93 ~v~f~t-~i~HpnV~-~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~-~~~~f~~~~r~~  168 (183)
                      +|+|.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++ |+++|.++||+|
T Consensus        83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~  162 (172)
T 2y9m_A           83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF  162 (172)
T ss_dssp             EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999 99999996 69999999998 899999999999999999999999999999999999999 999999999999


Q ss_pred             HhcCCC
Q 030112          169 LQGGYI  174 (183)
Q Consensus       169 ~~~~~~  174 (183)
                      +++++.
T Consensus       163 ~~~~~~  168 (172)
T 2y9m_A          163 LAERER  168 (172)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998874

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.9e-45  Score=281.48  Aligned_cols=143  Identities=27%  Similarity=0.538  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      ++.+||++|++++. ++++.+. +.  +|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus        25 ~a~~RL~kEl~~l~-~~g~~v~-~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~  100 (179)
T 2z5d_A           25 PGKRRMDTDVIKLI-ESKHEVT-IL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE  100 (179)
T ss_dssp             HHHHHHHHHHHHHH-HSSSCEE-EE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHhcC-cCCCEEE-EC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence            58999999999995 3577775 33  5789999999 999999999999999999999999999999999999999999


Q ss_pred             -CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          108 -EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       108 -~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                       +|.||+++|.++|+|+++|.+||.+ |+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus       101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~  170 (179)
T 2z5d_A          101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE  170 (179)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred             CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence             9999999999999999999999999 9999999999999999999999999999999999999998854

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=4e-44  Score=276.60  Aligned_cols=142  Identities=28%  Similarity=0.527  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      ++.+||++|++++...+ +.+  +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus        12 ~~~~RL~~El~~l~~~~-~~v--~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNST-RKV--YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSS-SCE--EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCC-CCC--CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence            56799999999994332 334  33 68999999999 999999999999999999999999999999999999999996


Q ss_pred             -CCceecccccCcccCCccHHhHHHHH-HHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          108 -EGNVCLNVLREDWKPVLNINTIIYGL-YHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       108 -~G~vcl~~l~~~W~p~~~i~~iL~~i-~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                       +|.||+++|.++|+|+++|.+||.+| +++|.+|++++|+|.|||.+|++|+++|.++||+++++++.
T Consensus        88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~  156 (171)
T 1yf9_A           88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT  156 (171)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence             99999999999999999999999997 79999999999999999999999999999999999999874

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=4.4e-43  Score=302.46  Aligned_cols=152  Identities=30%  Similarity=0.667  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112           28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN  104 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn  104 (183)
                      +.|.+||++|++++  ++++++.+. |. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   79 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   79 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccc
Confidence            46899999999999  677788775 66 68999999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcccCC
Q 030112          105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEP  181 (183)
Q Consensus       105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~~~~  181 (183)
                      |+.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++.....+|+
T Consensus        80 v~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De  156 (399)
T 4ddg_A           80 INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDE  156 (399)
T ss_dssp             BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             cCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988877664

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=4.8e-42  Score=264.18  Aligned_cols=141  Identities=26%  Similarity=0.476  Sum_probs=126.0

Q ss_pred             CCcchHHHHHHHHHHhhc--CC------------CCCceEeccCCCCCceEEEEEE-eCCCCCCC--CcEEEEEEEeCCC
Q 030112           24 VKKQCARELRLHKDITEL--NL------------PEACKISFPNGQDDLMNFEVSI-KPDEGYYQ--NGTFVFSFEVPPI   86 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~------------~~~~~~~~~~~~~n~~~w~~~i-gp~~tpye--gg~f~~~i~fp~~   86 (183)
                      .+|++.+.+||++|++++  +.            +.++.+. ++ ++|+++|+++| ||++|||+  ||.|+++|.||++
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~   80 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDD   80 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCC
Confidence            346667889999999999  22            3455554 44 78999999999 99999999  9999999999999


Q ss_pred             CCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHH-HHHHhhcC--CCCCCCccHHHHHHHHhCHHHHHH
Q 030112           87 YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIY-GLYHLFTE--PNHEDPLNHDAAELLRDSPACFET  163 (183)
Q Consensus        87 YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~-~i~~ll~~--p~~~~p~n~eaa~~~~~~~~~f~~  163 (183)
                      ||++||+|+|.|+||||||+.+|.||+++|.++|+|+++++++|. .|++++.+  |++++|+|.|||++|++|+++|++
T Consensus        81 YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~  160 (167)
T 4ds2_A           81 YPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAA  160 (167)
T ss_dssp             TTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHH
T ss_pred             CCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHH
Confidence            999999999999999999999999999999999999999999754 67777775  899999999999999999999999


Q ss_pred             HHH
Q 030112          164 NVR  166 (183)
Q Consensus       164 ~~r  166 (183)
                      +||
T Consensus       161 ~vr  163 (167)
T 4ds2_A          161 RVR  163 (167)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            998

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.8e-40  Score=252.58  Aligned_cols=133  Identities=20%  Similarity=0.352  Sum_probs=117.4

Q ss_pred             CCcchHHHHHHHHHHhhc--C-CCCCceEeccCC-CCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           24 VKKQCARELRLHKDITEL--N-LPEACKISFPNG-QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~-~~~~~~~~~~~~-~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      .....++.+||++|++++  + .++++.+..... ..|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t   95 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT   95 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence            345677889999999999  3 456777764331 23699999999 999999999999999999999999999999999


Q ss_pred             cccccCccCCCce---ecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 030112           99 KVYHPNIDLEGNV---CLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDS  157 (183)
Q Consensus        99 ~i~HpnV~~~G~v---cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~  157 (183)
                      +||||||+.+|.|   |++++. +|+|+++|++||.+|+++|.+|++++|+|.+||.+|.+|
T Consensus        96 ~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           96 KIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             ccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999999999999   888887 599999999999999999999999999999999998765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=8.1e-39  Score=244.18  Aligned_cols=127  Identities=20%  Similarity=0.390  Sum_probs=113.1

Q ss_pred             CCcchHHHHHHHHHHhhc--CCCCC-ceEeccCCCCC--ceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           24 VKKQCARELRLHKDITEL--NLPEA-CKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~~~~-~~~~~~~~~~n--~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      +....++.+||++|++++  +.+++ +.+...+ ++|  +++|+++| ||++||||||+|+++|.||++||++||+|+|.
T Consensus        20 ~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~   98 (160)
T 2a4d_A           20 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV   98 (160)
T ss_dssp             -CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESS-TTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             CeeechHHHHHHHHHHHHHhCCCCCcEEEEecC-CccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe
Confidence            345678999999999999  34556 5555334 444  89999999 99999999999999999999999999999999


Q ss_pred             ccccccCcc-CCCceeccccc--CcccCCccHHhHHHHHHHhhc-CCCCCCCccHHHH
Q 030112           98 TKVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFT-EPNHEDPLNHDAA  151 (183)
Q Consensus        98 t~i~HpnV~-~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~n~eaa  151 (183)
                      |+||||||+ .+|.||++++.  ++|+|+++|++||.+|+++|. +|++++|+|.|||
T Consensus        99 T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A           99 TKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             BCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             cCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            999999999 59999999997  899999999999999999995 6999999999987

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=7e-39  Score=267.53  Aligned_cols=150  Identities=27%  Similarity=0.452  Sum_probs=133.8

Q ss_pred             CCcchHHHHHHHHHHhhc--CCCCCce--Ee-ccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           24 VKKQCARELRLHKDITEL--NLPEACK--IS-FPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~~~~~~--~~-~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      ..+++.+.+||++|++.|  +.++++.  +. .++ ++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.
T Consensus        71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~-ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCD-EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE-SSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCcccceeeccc-CCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            346788999999999999  4455432  21 234 68999999999 99999999999999999999999999999999


Q ss_pred             cc-----ccccCccCCCceeccccc-------CcccCCc-cHHhHHHHHHHhhc--CCCCCCCccHHH--HHHHHhCHHH
Q 030112           98 TK-----VYHPNIDLEGNVCLNVLR-------EDWKPVL-NINTIIYGLYHLFT--EPNHEDPLNHDA--AELLRDSPAC  160 (183)
Q Consensus        98 t~-----i~HpnV~~~G~vcl~~l~-------~~W~p~~-~i~~iL~~i~~ll~--~p~~~~p~n~ea--a~~~~~~~~~  160 (183)
                      |+     ||||||+.+|.||+++|.       ++|+|++ +|.+||.+|++||.  +|++++|+|.+|  +.+|.+|+++
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~  229 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE  229 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence            98     999999999999999997       6899999 89999999999996  677899999987  5789999999


Q ss_pred             HHHHHHHHHhcCCC
Q 030112          161 FETNVRMALQGGYI  174 (183)
Q Consensus       161 f~~~~r~~~~~~~~  174 (183)
                      |.++||+++.+++.
T Consensus       230 Y~~~vr~~t~k~A~  243 (323)
T 3ceg_A          230 YDGNIRQATVKWAM  243 (323)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998763

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-38  Score=234.66  Aligned_cols=115  Identities=20%  Similarity=0.469  Sum_probs=99.8

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc-cc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV-YH  102 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~H  102 (183)
                      ++++.+||++|++++  +.++++.+. ++ ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus         4 m~~a~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   81 (125)
T 2fo3_A            4 MGNANYRIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH   81 (125)
T ss_dssp             -----CHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-eC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence            456789999999999  566787775 55 68999999999 99999999999999999999999999999999996 99


Q ss_pred             cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCC
Q 030112          103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE  143 (183)
Q Consensus       103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~  143 (183)
                      |||+.+|.||+++|.++|+|++++++||.+|+++|.+|+..
T Consensus        82 Pnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~  122 (125)
T 2fo3_A           82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK  122 (125)
T ss_dssp             TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred             CcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence            99999999999999999999999999999999999999754

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.9e-38  Score=234.31  Aligned_cols=116  Identities=22%  Similarity=0.465  Sum_probs=107.4

Q ss_pred             CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc-
Q 030112           25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV-  100 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-  100 (183)
                      ..++.+.+||++|++++  +.+.++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ 
T Consensus        16 ~~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~   93 (136)
T 2h2y_A           16 YNLGNANYRIQKELNNFLKNPPINCTID-VH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPP   93 (136)
T ss_dssp             CCTTSHHHHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCeEEE-ec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCC
Confidence            35567899999999999  667787775 55 68999999999 99999999999999999999999999999999996 


Q ss_pred             cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCC
Q 030112          101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNH  142 (183)
Q Consensus       101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~  142 (183)
                      |||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|+.
T Consensus        94 ~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           94 KHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            999999999999999999999999999999999999999874

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=2.2e-39  Score=242.14  Aligned_cols=126  Identities=23%  Similarity=0.473  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHhhc--C-CCCCceEeccCCC-CCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           28 CARELRLHKDITEL--N-LPEACKISFPNGQ-DDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~-~~~~~~~~~~~~~-~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      .++.+||++|++++  + .++++.+...+.+ .|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   84 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   84 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence            35679999999999  3 4567777643312 2599999999 9999999999999999999999999999999999999


Q ss_pred             cCccCC-Cce--ecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHH
Q 030112          103 PNIDLE-GNV--CLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL  154 (183)
Q Consensus       103 pnV~~~-G~v--cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~  154 (183)
                      |||+.+ |.|  |++++. +|+|++++++||.+|+++|.+|++++|+|.+|+.+|
T Consensus        85 Pnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           85 PCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             TTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             CCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            999995 999  999886 899999999999999999999999999999988654

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.7e-38  Score=232.53  Aligned_cols=119  Identities=24%  Similarity=0.545  Sum_probs=104.2

Q ss_pred             CCCCCCCcchHHHHHHHHHHhhc--CCCCCceEec-cCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCce
Q 030112           19 TGGTPVKKQCARELRLHKDITEL--NLPEACKISF-PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKV   94 (183)
Q Consensus        19 ~~~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~-~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v   94 (183)
                      +|+.....++.+.+||++|++++  +.++++.+.. ++ ++|+++|+++| ||++||||||.|+++|.||++||++||+|
T Consensus        12 ~~~~~~~~Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v   90 (136)
T 2a7l_A           12 SGLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSV-QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV   90 (136)
T ss_dssp             --CCCGGGGTTSCHHHHHHHHHHHHSCCTTCCCCTTCC-CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEE
T ss_pred             cccccchhccHHHHHHHHHHHHHHhCCCCCEEEEEeeC-ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEE
Confidence            34433344444569999999999  6677777542 44 78999999999 99999999999999999999999999999


Q ss_pred             eEecccc--ccCccCCCceecccccCcccCCccHHhHHHHHHHhhc
Q 030112           95 KCKTKVY--HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  138 (183)
Q Consensus        95 ~f~t~i~--HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~  138 (183)
                      +|.|++|  ||||+.+|.||+++|.++|+|++++++||.+|+++|.
T Consensus        91 ~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           91 MFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             EEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             EEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            9999999  9999999999999999999999999999999999974

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=242.60  Aligned_cols=124  Identities=20%  Similarity=0.392  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHHhhc--CCCCC-ceEeccCCCC--CceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112           27 QCARELRLHKDITEL--NLPEA-CKISFPNGQD--DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~-~~~~~~~~~~--n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i  100 (183)
                      ..++.+||++|++++  +.+++ +.+...+ ++  |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  111 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  111 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESS-TTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecC-cccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence            466889999999999  44556 4554334 44  499999999 99999999999999999999999999999999999


Q ss_pred             cccCcc-CCCceeccccc--CcccCCccHHhHHHHHHHhhcC-CCCCCCccHHHH
Q 030112          101 YHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTE-PNHEDPLNHDAA  151 (183)
Q Consensus       101 ~HpnV~-~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~n~eaa  151 (183)
                      |||||+ .+|.||++++.  ++|+|+++|++||.+|+++|.+ |++++|+|.|||
T Consensus       112 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          112 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             ccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            999999 59999999997  8999999999999999999975 999999999987

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-35  Score=232.24  Aligned_cols=121  Identities=17%  Similarity=0.365  Sum_probs=98.9

Q ss_pred             CCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           21 GTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        21 ~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      +|+++..+.+.+||++|+++|  +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus         6 ~~~~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~   83 (187)
T 2f4w_A            6 TSSKRAPTTATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMI   83 (187)
T ss_dssp             --------CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred             cCCCCCccHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Confidence            344567788999999999999  567788775 55 68999999999 99999999999999999999999999999999


Q ss_pred             ccccccCccCCCceecccc---cCcccCCccHHhHHHHHHHhhcCCCCCCC
Q 030112           98 TKVYHPNIDLEGNVCLNVL---REDWKPVLNINTIIYGLYHLFTEPNHEDP  145 (183)
Q Consensus        98 t~i~HpnV~~~G~vcl~~l---~~~W~p~~~i~~iL~~i~~ll~~p~~~~p  145 (183)
                      |+  ||||+.+|.||+++|   .++|+|+++|.+||.+|+++|.+|+++..
T Consensus        84 T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           84 TP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             SC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             CC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            99  999999999999999   68999999999999999999999887643

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=1.9e-36  Score=236.49  Aligned_cols=140  Identities=14%  Similarity=0.270  Sum_probs=115.5

Q ss_pred             CCCCcchHHHHHHHHHHhhcC--C---CCCceEeccCCCCCceEEEEEE-eC-CCCCCCC-----------cEEEEEEEe
Q 030112           22 TPVKKQCARELRLHKDITELN--L---PEACKISFPNGQDDLMNFEVSI-KP-DEGYYQN-----------GTFVFSFEV   83 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l~--~---~~~~~~~~~~~~~n~~~w~~~i-gp-~~tpyeg-----------g~f~~~i~f   83 (183)
                      .+..++.++.+||++||++|.  .   +.++.+. +. ++|+++|+++| || ++|||+|           |.|+++|.|
T Consensus        20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~f   97 (186)
T 1zuo_A           20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF   97 (186)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred             CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-Ec-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEEC
Confidence            344567789999999999993  2   3556664 55 68999999999 97 9999998           899999999


Q ss_pred             CCCCCCCCCceeEecccccc-CccCCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHH
Q 030112           84 PPIYPHDAPKVKCKTKVYHP-NIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACF  161 (183)
Q Consensus        84 p~~YP~~pP~v~f~t~i~Hp-nV~~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f  161 (183)
                      |++||++||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|+...        .|..++.+|
T Consensus        98 p~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y  169 (186)
T 1zuo_A           98 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQY  169 (186)
T ss_dssp             CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCC
T ss_pred             CCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHH
Confidence            99999999999999999999 69999999999997 789999999999999999999986432        344455666


Q ss_pred             HHHHHHHHhc
Q 030112          162 ETNVRMALQG  171 (183)
Q Consensus       162 ~~~~r~~~~~  171 (183)
                      .+.+++++.+
T Consensus       170 ~~~~~~~~~~  179 (186)
T 1zuo_A          170 NLARAQQSYN  179 (186)
T ss_dssp             CHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            6666655443

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.91  E-value=3.8e-26  Score=172.72  Aligned_cols=102  Identities=15%  Similarity=0.245  Sum_probs=89.5

Q ss_pred             CCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCCCC
Q 030112           24 VKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAP   92 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~pP   92 (183)
                      ++......+||++||+.|..    ++. +. .+|+..|.+.+ ||.+|+|+||          .|.++|.||++||.+||
T Consensus        27 p~~~~~w~~RL~eE~k~L~k----~v~-p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PP  100 (172)
T 2z6o_A           27 PRDRELWVQRLKEEYQSLIR----YVE-NN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAP  100 (172)
T ss_dssp             TTCTHHHHHHHHHHHHHHHH----HHH-HH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC
T ss_pred             CCccHHHHHHHHHHHHHHHH----Hhc-cC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCC
Confidence            45567779999999999954    232 44 67899999999 9999999999          99999999999999999


Q ss_pred             ceeEecc-ccccCccCCCceecccc-cC---cccCCccHHhHHH
Q 030112           93 KVKCKTK-VYHPNIDLEGNVCLNVL-RE---DWKPVLNINTIIY  131 (183)
Q Consensus        93 ~v~f~t~-i~HpnV~~~G~vcl~~l-~~---~W~p~~~i~~iL~  131 (183)
                      +|+|.+. +||||||.+|+||++++ .+   .|+|+++|.++|.
T Consensus       101 eV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          101 EIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             CCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             eeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            9999998 99999999999999999 43   4559999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.78  E-value=5.4e-19  Score=134.37  Aligned_cols=111  Identities=21%  Similarity=0.337  Sum_probs=85.0

Q ss_pred             HHHHHHHhhc-CCCCCceEe---ccCCCCCceEEEEEE-eCCCCCCCCcE---EEEEEEeCCCCCCCCCceeEec-----
Q 030112           32 LRLHKDITEL-NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKT-----   98 (183)
Q Consensus        32 ~RL~~E~~~l-~~~~~~~~~---~~~~~~n~~~w~~~i-gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t-----   98 (183)
                      +|..+|...+ ..-+.....   ... ++...++.+.+ |...++|+||.   |.+.|.||.+||++||.|.|.+     
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m  109 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  109 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence            4556666666 222222221   112 34445566666 66668999998   8899999999999999998865     


Q ss_pred             --c---cc-ccCccCCCceecccccCcccC-CccHHhHHHHHHHhhcCCCCCC
Q 030112           99 --K---VY-HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTEPNHED  144 (183)
Q Consensus        99 --~---i~-HpnV~~~G~vcl~~l~~~W~p-~~~i~~iL~~i~~ll~~p~~~~  144 (183)
                        +   |+ |||||.+|+||++.|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus       110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence              1   77 9999999999999995 6988 6899999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.70  E-value=1.8e-18  Score=128.12  Aligned_cols=94  Identities=14%  Similarity=0.279  Sum_probs=76.1

Q ss_pred             CCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCC
Q 030112           22 TPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHD   90 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~   90 (183)
                      .+++....-..||+.||..|=  ..  +..  +.++-..|...+ |+.||+|+|+          .|.++|.||.+||.+
T Consensus        27 agPrd~~~w~~RlkeEy~alI--~y--v~~--nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~t  100 (168)
T 3kpa_A           27 AGPRDGDKWTARLKEEYASLI--TY--VEH--NKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQA  100 (168)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHH--HH--HHH--HHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHH--HH--HHh--cccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCC
Confidence            455566778999999999881  11  111  122334588888 9999999999          999999999999999


Q ss_pred             CCceeEecc-ccccCccCCCceecccccCcccCCc
Q 030112           91 APKVKCKTK-VYHPNIDLEGNVCLNVLREDWKPVL  124 (183)
Q Consensus        91 pP~v~f~t~-i~HpnV~~~G~vcl~~l~~~W~p~~  124 (183)
                      ||.|+|.+. ++||++|.+|+||+++.   |+|.+
T Consensus       101 PPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW  132 (168)
T 3kpa_A          101 PPEIALPELEGKTVKMYRGGKICMTTH---FFPLW  132 (168)
T ss_dssp             CCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred             CCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence            999999995 89999999999999986   66654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.49  E-value=5.1e-14  Score=105.24  Aligned_cols=80  Identities=23%  Similarity=0.383  Sum_probs=70.6

Q ss_pred             CCCceEEEEEEeCCCCCCCCcEEEE--EEEeCCCCCCCCCceeEecc------ccccCccCCCceecccccCcccC-Ccc
Q 030112           55 QDDLMNFEVSIKPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTK------VYHPNIDLEGNVCLNVLREDWKP-VLN  125 (183)
Q Consensus        55 ~~n~~~w~~~igp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HpnV~~~G~vcl~~l~~~W~p-~~~  125 (183)
                      ..++..|.++|.   .+|+|+.|.+  .|.||++||++||.| |.++      ..|||||.+|+||++.|.+ |++ ..+
T Consensus        50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~sn  124 (146)
T 3obq_A           50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSD  124 (146)
T ss_dssp             TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCC
T ss_pred             hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCC
Confidence            468899999993   6799999885  899999999999999 6655      5899999999999999965 977 799


Q ss_pred             HHhHHHHHHHhhcC
Q 030112          126 INTIIYGLYHLFTE  139 (183)
Q Consensus       126 i~~iL~~i~~ll~~  139 (183)
                      +.+++..|++.|.+
T Consensus       125 L~~ll~~l~~~F~~  138 (146)
T 3obq_A          125 LLGLIQVMIVVFGD  138 (146)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998875

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.08  E-value=0.002  Score=46.10  Aligned_cols=69  Identities=10%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeC-CCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKP-DEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp-~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      +....+...|+..|+.--+-.+.+..  +....+.+.+.+ .+..-+.-.+.+.|.||++||..||.|.+.+
T Consensus         9 ~~~~e~q~~EleaL~sIy~d~~~~~~--~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A            9 TDYGEEQRNELEALESIYPDSFTVLS--ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSEEECC--SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHccCceEEcc--CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            34456677888888322222333222  224556666622 2222233468899999999999999997654

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.055  Score=38.89  Aligned_cols=72  Identities=13%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHhhcCCCCCceEeccCCC------CCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112           27 QCARELRLHKDITELNLPEACKISFPNGQ------DDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~------~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      +.....+-..|+..|+.--+..+......      +....+.+.+.+....-..-.+.+.+.+|++||..||.|.+.+
T Consensus         8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A            8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            34555667788888843222234322211      1245677777433222123468899999999999999998754

>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}

Probab=95.29  E-value=0.0097  Score=30.69  Aligned_cols=18  Identities=39%  Similarity=0.770  Sum_probs=14.3

Q ss_pred             CccchhhhHhhHHHHhhc
Q 030112            1 MIRLFKVKEKQKEDAENN   18 (183)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~   18 (183)
                      ||++|+++++|+++..+.
T Consensus         1 MIkLFSlK~kk~~e~~~~   18 (26)
T 1tt5_E            1 MIKLFSLKQQKKEEESAG   18 (26)
T ss_pred             CcchhhhhHHHHHhhccc
Confidence            899999999996555543

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.27  E-value=0.14  Score=36.24  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=28.3

Q ss_pred             ceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           58 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        58 ~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      ...+.+.+.+.+..-..-.+.+.+.+|++||..||.|...
T Consensus        39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            4577777744331111236899999999999999999754

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=95.27  E-value=0.049  Score=39.06  Aligned_cols=71  Identities=13%  Similarity=0.160  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhhcCCCCCceEeccCCCC-----CceEEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112           27 QCARELRLHKDITELNLPEACKISFPNGQD-----DLMNFEVSIKPDEG--YYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~-----n~~~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~   97 (183)
                      +.....+...|+..|+.--+-.+.......     ....+.+.+.+.+.  .-..-.+.+.|.||++||..+|.|.+.
T Consensus         8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A            8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             CcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            345556678888888321112232222111     13456666643221  001236889999999999999999874

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=94.52  E-value=0.042  Score=38.96  Aligned_cols=66  Identities=17%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             HHHHHHhhcCCCCCceEeccCCC--CCceEEEEEEeCC-CCCCC--CcEEEEEEEeCCCCCCCCCceeEec
Q 030112           33 RLHKDITELNLPEACKISFPNGQ--DDLMNFEVSIKPD-EGYYQ--NGTFVFSFEVPPIYPHDAPKVKCKT   98 (183)
Q Consensus        33 RL~~E~~~l~~~~~~~~~~~~~~--~n~~~w~~~igp~-~tpye--gg~f~~~i~fp~~YP~~pP~v~f~t   98 (183)
                      ....|+..|+---+-.+.+....  .+...+.+.+.+. +..-+  .-.+.+.|.||++||..+|.|...+
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            56677877732111222222211  2344444455322 21111  2468899999999999999998775

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.33  E-value=0.16  Score=37.38  Aligned_cols=65  Identities=15%  Similarity=0.085  Sum_probs=40.1

Q ss_pred             EEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHH
Q 030112           76 TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR  155 (183)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~  155 (183)
                      .+.+.|.+|++||..+|.|...+.                    |-.......+...|...+.+-+...+.=..+....+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lq  135 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS--------------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQ  135 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS--------------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHH
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            799999999999999999975542                    222222334445555555444445555555555555


Q ss_pred             hCHHH
Q 030112          156 DSPAC  160 (183)
Q Consensus       156 ~~~~~  160 (183)
                      ++-+.
T Consensus       136 e~~~~  140 (154)
T 2daw_A          136 DNSAS  140 (154)
T ss_dssp             HTTHH
T ss_pred             HHHHH
Confidence            55433

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=93.27  E-value=0.36  Score=35.24  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             EEEEEEEeCCCCCCCCCceeEecc
Q 030112           76 TFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      .+.+.|.+|++||..||.|...+.
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            588999999999999999986653

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=92.75  E-value=0.59  Score=35.64  Aligned_cols=82  Identities=13%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             HHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCCce
Q 030112           33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV  111 (183)
Q Consensus        33 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~v  111 (183)
                      +|.+|+..+-=..-  +.+   ..++....+++ ...     |..+.++|.++.+||.+||.+...-|.  |        
T Consensus         5 ~li~Ei~~iGW~~l--~~i---d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~--------   64 (186)
T 3zqs_A            5 SLIEEIGTLGWDKL--VYA---DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--P--------   64 (186)
T ss_dssp             SHHHHHHHHCGGGE--EEE---CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--C--------
T ss_pred             HHHHHHHHhCCcee--eee---cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--C--------
Confidence            57778877721111  111   34677888888 433     568999999999999999988655442  1        


Q ss_pred             ecccccCcccCCccHHhHHHHHHHhhc
Q 030112          112 CLNVLREDWKPVLNINTIIYGLYHLFT  138 (183)
Q Consensus       112 cl~~l~~~W~p~~~i~~iL~~i~~ll~  138 (183)
                          +.-.|.|..++.+++...+.++.
T Consensus        65 ----~~~~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           65 ----FCASWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             ----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             ----cccccCCCccHHHHHHHHHHHHH
Confidence                11379999898888877665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	6e-46
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	3e-32
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	8e-32
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-31
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	7e-31
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	8e-30
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-29
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-28
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-28
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-28
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-27
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	1e-27
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-27
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-26
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	7e-26
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	2e-25
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	4e-25
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	5e-25
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-25
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-24
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-23
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-23
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	8e-23
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	3e-22
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-20
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	7e-19
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	8e-19
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	4e-16
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	6e-15
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	5e-14
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	3e-12

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  146 bits (369), Expect = 6e-46
 Identities = 100/155 (64%), Positives = 125/155 (80%), Gaps = 1/155 (0%)

Query: 29  ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
           A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YP
Sbjct: 3   AAQLRIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 61

Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNH 148
           HD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN 
Sbjct: 62  HDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 121

Query: 149 DAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183
           +AAE+L+++   FE NV+ +++GGYIG  YFE  +
Sbjct: 122 EAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 156

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  111 bits (278), Expect = 3e-32
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 17/151 (11%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYP 88
           L L K + ++     +       +  +D+  +EV +  P +  Y+ G F    + P  YP
Sbjct: 3   LLLKKQLADMRRVPVDGFSAGLVDD-NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYP 61

Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVLRE-------------DWKPVLNINTIIYGLYH 135
              PK+K  ++++HPNID EGNVC+++L +              W PV  + TI+  +  
Sbjct: 62  QKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVIS 121

Query: 136 LFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
           + T+PN E P N DAA++ R++ A F+  V 
Sbjct: 122 MLTDPNFESPANVDAAKMQRENYAEFKKKVA 152

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  110 bits (275), Expect = 8e-32
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++ E+  + P  C    P G +        + P    Y+ G F       P YP  
Sbjct: 6   RIQKELAEITLDPPPNCSA-GPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 64

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PKV  +T++YH NI+ +G +CL++L+++W P L I+ ++  +  L T+ N  DPL    
Sbjct: 65  PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 124

Query: 151 AELLRDSPACFETNVRM 167
           A     + A  +   R 
Sbjct: 125 ATQYMTNRAEHDRMARQ 141

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +D   +  + P       P   + ++   + I P +  Y++GTF    E    YP+ 
Sbjct: 7   RLMRDFKRMKEDAPPGVSA-SPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            P VK  ++++HPN+   G +CL++L+  W P  ++ +I+  +  LF +PN   P N +A
Sbjct: 66  PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 125

Query: 151 AELLRDSPACFETNVRM 167
           A L +D  + +   V+ 
Sbjct: 126 ATLFKDHKSQYVKRVKE 142

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  107 bits (268), Expect = 7e-31
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +D  +L  + P       P   + L    +   P E  +++GTF  S E    YP+ 
Sbjct: 7   RLMRDFKKLQEDPPAGVSG-APTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            P VK  +K++HPN+  +G++CL++L+  W P  ++  I+  +  L  EPN   P N  A
Sbjct: 66  PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 125

Query: 151 AELLRDSPACFETNVRM 167
           A+L +++   +E  V+ 
Sbjct: 126 AQLYQENRREYEKRVQQ 142

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  104 bits (261), Expect = 8e-30
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K++ +L  + P  C    P G D        + P E  YQ G F  +   P  YP  
Sbjct: 5   RIQKELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            PKV   T++YHPNI+  G++CL++LR  W P L I+ ++  +  L  +PN +DPL  + 
Sbjct: 64  PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123

Query: 151 AELLRDSPACFETNVRM 167
           A + +     +    R 
Sbjct: 124 ARIYKTDRERYNQLARE 140

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  102 bits (254), Expect = 9e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
           +R  R+ K+I  +  +      + F + + D+ + + +   P    Y+ G FV   EVP 
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59

Query: 86  IYPHDAPKVKCKTKVYHPNIDLEGNV-CLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
            YP   PK++  TKVYHPNI       CL++L+  W PV+ + + +  L  L   P   D
Sbjct: 60  EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119

Query: 145 PLNHDAAELLRDSPACFETNVRM 167
           P + + A+        F     +
Sbjct: 120 PQDAEVAQHYLRDRESFNKTAAL 142

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  100 bits (251), Expect = 3e-28
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 31  ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
            +R+ K++ +L    P   +    +   +++ +   + PD+  Y    F      PP YP
Sbjct: 2   SMRVVKELEDLQKKPPPYLRN-LSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYP 60

Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW-KPVLNINTIIYGLYHLFTEPNHEDPLN 147
              P +K  TK+YHPN+D  G +CL ++  +  KP      ++  L  L   PN  +PL 
Sbjct: 61  FKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 120

Query: 148 HDAAELLRDSPACFETNVRM 167
            D A+LL  +P  F  N   
Sbjct: 121 MDLADLLTQNPELFRKNAEE 140

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  101 bits (252), Expect = 3e-28
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL K++ +L  + P        +  +  +   +   P +  Y +G F    E P  YP  
Sbjct: 7   RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 66

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLF 137
            PK+     + HPNI   G VC+++L              E W PV ++  I+  +  + 
Sbjct: 67  PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 126

Query: 138 TEPNHEDPLNHDAAELLRDSPACFETNVRMALQ 170
           +EPN E   N DA  L RD+   FE  V++++ 
Sbjct: 127 SEPNIESGANIDACILWRDNRPEFERQVKLSIL 159

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  100 bits (251), Expect = 4e-28
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K+  +L  +         P+  +          P++  Y++G F     +P  YP +
Sbjct: 7   RIIKETEKLVSDPVPGITA-EPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
           APKV+  TK+YHPNID  G +CL+VL+ +W P L I T++  +  L   PN  DPL +D 
Sbjct: 66  APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125

Query: 151 AELLRDSPACFETNVRM 167
           AE    +    +   R 
Sbjct: 126 AEDWIKNEQGAKAKARE 142

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 99.1 bits (246), Expect = 1e-27
 Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 4/138 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL K++ E+     +  +      + +L+ ++  I PD   Y  G F      P  YP  
Sbjct: 3   RLMKELEEIRKCGMKNFRN-IQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFK 61

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
            PK+  KTK+YHPNID +G VCL V+  E+WKP    + +I  L  L  +P  E PL  D
Sbjct: 62  PPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRAD 121

Query: 150 AAELLRDSPACFETNVRM 167
            AE        F  N   
Sbjct: 122 LAEEYSKDRKKFCKNAEE 139

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 99.1 bits (246), Expect = 1e-27
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           R+ K+   L        K   P+  +      V   P +  ++ GTF     +P  YP  
Sbjct: 6   RIIKETQRLLAEPVPGIKA-EPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
           APKV+  TK+YHPN+D  G +CL++L++ W P L I T++  +  L + PN +DPL +D 
Sbjct: 65  APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 124

Query: 151 AELLRDSPACFETNVRM 167
           AE  + + A      R 
Sbjct: 125 AEQWKTNEAQAIETARA 141

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 9e-27
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           RL +++  L +     IS     D+L  +  +I       Y++  +  S E P  YP++A
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 64

Query: 92  PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
           P VK  T  YHPN+D +GN+ L++L+E W  + ++ TI+  +  L  EPN + PLN  AA
Sbjct: 65  PTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 124

Query: 152 ELLRDSPACFETNVR 166
           EL ++  A F+  ++
Sbjct: 125 ELWKNPTA-FKKYLQ 138

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 95.6 bits (237), Expect = 4e-26
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 4/136 (2%)

Query: 33  RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +++  L +     I+ FP+G D+L  +  ++  P +  Y++  +  + E P  YP+ 
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
            P VK  T  +HPN+D  GN+CL++L+E+W    ++ TI+  L  L  EPN+  PLN  A
Sbjct: 72  PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131

Query: 151 AELLRDSPACFETNVR 166
           A++  +    ++  + 
Sbjct: 132 ADMWSNQTE-YKKVLH 146

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 7e-26
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPH 89
            ++K++T L  + P+  K+ FPN  +DL + +V+I+  EG  Y  G F     +   +P 
Sbjct: 10  LVYKEVTTLTADPPDGIKV-FPNE-EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 67

Query: 90  DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
             PK    TK++HPN+   G +C+NVL+ DW   L I  ++  +  L   PN E  LN +
Sbjct: 68  SPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEE 127

Query: 150 AAELLRDSPACFETNVRM 167
           A  LL ++   +    R+
Sbjct: 128 AGRLLLENYEEYAARARL 145

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 94.1 bits (233), Expect = 2e-25
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 2/144 (1%)

Query: 26  KQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVP 84
               +  R H          +  +S      D+  +   I  P    Y+ G F     +P
Sbjct: 11  ADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP 70

Query: 85  PIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE 143
           P YP++ PK+K  TK++HPNI  + G +CL++L+ +W P L I T +  +  +  +P   
Sbjct: 71  PDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPT 130

Query: 144 DPLNHDAAELLRDSPACFETNVRM 167
           DP + + A+++ ++   F    ++
Sbjct: 131 DPQDAEVAKMMIENHPLFVQTAKL 154

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 92.1 bits (228), Expect = 4e-25
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 32  LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYP 88
           L L + + EL  N  E       +  +DL  +EV I  P +  Y+ G F      P  YP
Sbjct: 2   LLLRRQLAELNKNPVEGFSAGLIDD-NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60

Query: 89  HDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYH 135
              PK+K  T+++HPN+D  G+VC+++L              E W P+  + TI+  +  
Sbjct: 61  LRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 120

Query: 136 LFTEP 140
           +  +P
Sbjct: 121 MLADP 125

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 5e-25
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 33  RLHKDITEL--NLPEACK---ISFPNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPI 86
           RL ++      + P          P+G  +LMN+E +I   +G  ++ G F         
Sbjct: 6   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHED 144
           YP   PK K +  ++HPN+   G V L++L E  DW+P + I  I+ G+  L  EPN +D
Sbjct: 66  YPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQD 125

Query: 145 PLNHDAAELLRDSPACFETNVRM 167
           P   +A  +   +   +E  VR 
Sbjct: 126 PAQAEAYTIYCQNRVEYEKRVRA 148

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.6 bits (229), Expect = 6e-25
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 33  RLHKDITEL-----NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPI 86
           R+ ++  E+           K+   +  ++       I  P +  Y+ G +    ++P  
Sbjct: 8   RIKREFKEVLKSEETSKNQIKVDLVD--ENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 65

Query: 87  YPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDP 145
           YP + PKV+  TK++HPNI    G +CL++L++ W   + + T++  L  L      +DP
Sbjct: 66  YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 125

Query: 146 LNHDAAELLRDSPACFETNVRM 167
            +   A   + +P  F+   R+
Sbjct: 126 QDAVVANQYKQNPEMFKQTARL 147

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 89.0 bits (220), Expect = 1e-23
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 32  LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
           L LH+D  +L       I+     +D+M +EV I+      +Q   F  +      Y + 
Sbjct: 7   LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 66

Query: 91  APKVKCKTKVYHPNIDLEGN-VCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLN 147
            P VK  T  +HPN+D      C++ L   E W     +++I+  L  + + P  E+P+N
Sbjct: 67  PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 126

Query: 148 HDAAELLRDSPACFETNVRM 167
            +AA +L    + + T +R+
Sbjct: 127 LEAARILVKDESLYRTILRL 146

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 2e-23
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           RL K++  L  + P    ++  + Q+ +  + V ++      Y+   F   F+    YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 90  DAPKVKCKTKV--YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 138
           D+P+V    +    HP++   G++CL++L EDW P L++ ++   +  + +
Sbjct: 67  DSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 87.1 bits (215), Expect = 8e-23
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 33  RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
           R   D   + L  + +  +P+  D +  F V  K P+   Y++GT++   ++P  YP  +
Sbjct: 4   RREMDY--MRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 59

Query: 92  PKVKCKTKVYHPNIDLEGN-VCLNVLREDWKPVLNINTIIYGLY-HLFTEPNHEDPLNHD 149
           P +    ++ HPN+D     VCL+V+ + W P+  +  I       L   PN  DPLN  
Sbjct: 60  PSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQ 119

Query: 150 AAELLRDSPACFETNVRM 167
           AA LL      F+  +R 
Sbjct: 120 AAHLLHADRVGFDALLRE 137

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 3e-22
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 29  ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPI 86
            R  RL +++  L    P      + +           +      Y+ G F     +P  
Sbjct: 2   QRASRLKRELHMLATEPPPGITC-WQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60

Query: 87  YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED----WKPVLNINTIIYGLYHLFTEPNH 142
           YP + P+++  T +YHPNID  G +CL+VL+      W+P LNI T++  +  L +EPN 
Sbjct: 61  YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120

Query: 143 EDPLNHDAAELLRDSPACFETNVRM 167
           +DPL  D +   + +   F  N R 
Sbjct: 121 DDPLMADISSEFKYNKPAFLKNARQ 145

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 2e-20
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 30  RELRLHKDITELN---LPEACKISFPNGQD-DLMNFEVSIK-PDEGYYQNGTFVFSFEVP 84
           R  RL +++ E               + +D  L  +   I  P    Y+N  +    E  
Sbjct: 6   RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 65

Query: 85  PIYPHDAPKVKCKTKVYHPNIDLEGN----VCLNVLREDWKPVLNINTIIYGLYHLFTEP 140
           P YP   P V+  TK+    ++          ++VL   W+   +I  ++  L  L    
Sbjct: 66  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSK 124

Query: 141 -NHEDPLNHDAA 151
            N + P   +  
Sbjct: 125 ENMKLPQPPEGQ 136

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 76.2 bits (187), Expect = 7e-19
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 30  RELRLHKDITEL---NLPEACKISFPNGQD-DLMNFEVSIK-PDEGYYQNGTFVFSFEVP 84
           R  RL +++ +      PE+C     +  D  +  +  +I  P    ++N  +  S +  
Sbjct: 5   RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64

Query: 85  PIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNH 142
           P YP   PKV   +K+  P ++   G V  +     DWK    + T++  L      P +
Sbjct: 65  PNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPAN 124

Query: 143 EDPLN 147
           +    
Sbjct: 125 KKLRQ 129

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 75.5 bits (185), Expect = 8e-19
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
           R+ K++     N P  C +      +++  + V     +   Y N  +      P  YP 
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHP--NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 59

Query: 90  DAPKVKCKTKVY-HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 138
             P V    K   H ++   G++CL++L +D+ P L+I+ ++  +  + +
Sbjct: 60  KPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.6 bits (170), Expect = 4e-16
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 16/130 (12%)

Query: 24  VKKQCARELRLHKDITELNLPEACKISFPNG-QDDLMNFEVSIKPDEGYYQNGTFVFSFE 82
                   L     +     P     +  +G    L++   +I   E      +      
Sbjct: 24  TFHDSLALLDNFHSLR----PRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMW 79

Query: 83  VPPIYPHDAPKVKCKTKV-----------YHPNIDLEGNVCLNVLREDWKPVLNINTIIY 131
           VP +YP   P +    +                ID  G + L +L       +N+  ++ 
Sbjct: 80  VPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQ 139

Query: 132 GLYHLFTEPN 141
            L  L  EP 
Sbjct: 140 ELMSLLHEPP 149

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (161), Expect = 6e-15
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 56  DDLMNFEVSIK-PDEGYYQNGTFVFSFEV--PPIYPHDAPKVKCKTK-----VYHPNIDL 107
           D      +++       Y+  T+     +     YP++ P    K           ++D 
Sbjct: 44  DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA 103

Query: 108 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPN 141
            G + L  L E   P  ++  +I  +  +F +  
Sbjct: 104 NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP 137

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 5e-14
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 4/123 (3%)

Query: 33  RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD 90
           RL +D   +  +         P   + L    V   P+   Y+ G +      P  +P  
Sbjct: 5   RLKQDYLRIKKDPVPYICA-EPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63

Query: 91  APKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
            P +   T       +    + +     + W P  +++TI+ GL     E          
Sbjct: 64  PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIET 123

Query: 150 AAE 152
           +  
Sbjct: 124 SDF 126

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-12
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 21/155 (13%)

Query: 33  RLHKDITEL---NLPEACKISFPNGQDDLMNFEVSI-------------KPDEGYYQNGT 76
           RL K++ ++      +    S     D L ++ V +             +  +       
Sbjct: 8   RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 67

Query: 77  FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR--EDWKPVLNINTIIYGLY 134
            + +F     +P D P V+    V      L G      L   + W    +I ++I  + 
Sbjct: 68  ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQIN 127

Query: 135 HLFTEPN--HEDPLNHDAAELLRDSPACFETNVRM 167
               +     +   N +   L R   + + + V++
Sbjct: 128 ATLVKGKARVQFGANKNQYNLARAQQS-YNSIVQI 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.8
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.73
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	98.13
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	95.09
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	94.99
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	94.84
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	94.74

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=5.6e-48  Score=292.72  Aligned_cols=156  Identities=64%  Similarity=1.158  Sum_probs=150.3

Q ss_pred             chHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           27 QCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      ++.|.+||++|+++|+.++++.+.+++ ++|+++|+++|||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~~~~i~~~~-~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~   79 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID   79 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             CCHHHHHHHHHHHHhCCCCCCcEEEcC-CCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCcccc
Confidence            467899999999999888898998776 7999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcccCCCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM  183 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~~~~~~  183 (183)
                      .+|.||++++.++|+|++++++||.+|+++|.+|++++|+|.|||++|++|+++|+++||+|++++++++++|++.|
T Consensus        80 ~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~  156 (157)
T d1y8xa1          80 LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL  156 (157)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCB
T ss_pred             ccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCCCcCCEecchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1.2e-46  Score=283.16  Aligned_cols=144  Identities=30%  Similarity=0.651  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112           28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN  104 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn  104 (183)
                      ++|.|||++|+++|  +.+.|+.+. +. ++|+++|+++| ||.+|||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGA-PT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPN   79 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEE-EC-CCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCccccee
Confidence            46789999999999  677888875 66 78999999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      |+.+|.||++++.+.|+|++++.+||.+|+++|.+|+.++|+|.||+++|++|+++|+++||+|+++.+
T Consensus        80 I~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks~  148 (149)
T d1z3da1          80 VYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW  148 (149)
T ss_dssp             BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             EcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2e-46  Score=281.54  Aligned_cols=145  Identities=28%  Similarity=0.593  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112           28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN  104 (183)
Q Consensus        28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn  104 (183)
                      +++.|||++|+++|  +.+.++.+. +. ++|++.|+++| ||.+|||+||+|++.|.||++||++||+|+|.|+|||||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~-~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCN   78 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEE-EC-CcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCce
Confidence            46889999999999  778888885 66 78999999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      |+++|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+.++|.
T Consensus        79 v~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          79 INSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999863

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=6.6e-46  Score=279.99  Aligned_cols=146  Identities=28%  Similarity=0.626  Sum_probs=139.1

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      +++|.|||++||++|  +.+.|+.+. +. ++|++.|+++| ||.+|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   78 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP   78 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEE-EC-CCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCcc
Confidence            357889999999999  677888885 66 68999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      ||+.+|.||++++.++|+|++++.+||.+|+++|.+|+.++|+|.|||++|++|+++|.++||+++++++.
T Consensus        79 nI~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~  149 (153)
T d1ayza_          79 NVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE  149 (153)
T ss_dssp             TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998864

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=277.11  Aligned_cols=142  Identities=31%  Similarity=0.588  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.|||++|+++|  +.++++.+. +. ++|+++|+++| ||.||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD   79 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEE-Ec-CCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCC
Confidence            689999999999  567788775 66 78999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      .+|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.|||++|+ |+++|+++|+++++|++.
T Consensus        80 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          80 TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTCC
T ss_pred             CCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999999999999995 999999999999999863

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.8e-45  Score=275.96  Aligned_cols=142  Identities=32%  Similarity=0.694  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      |.|||++|+++|  +++.++.+. +. ++|++.|+++| ||.+|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~-~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEE-EC-CCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeEC
Confidence            789999999999  677888775 55 78999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      .+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.||+++|++|+++|+++||+++.+++
T Consensus        80 ~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          80 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999886

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=278.00  Aligned_cols=146  Identities=29%  Similarity=0.534  Sum_probs=139.0

Q ss_pred             CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112           25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY  101 (183)
Q Consensus        25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~  101 (183)
                      +++..+.|||++|+++|  +.++++.+. ++ ++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus         2 ~~~~~~~kRl~kEl~~l~~~~~~gi~v~-p~-~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (151)
T d1zdna1           2 NLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   79 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEE-Ec-CcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCC
Confidence            35778899999999999  677888875 77 78999999999 999999999999999999999999999999999999


Q ss_pred             ccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112          102 HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGG  172 (183)
Q Consensus       102 HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~  172 (183)
                      ||||+.+|.+|++.+.++|+|++++.+||.+|+++|.+|+.++|+|.|||++|++|+++|+++||+|+.++
T Consensus        80 HPnI~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~  150 (151)
T d1zdna1          80 HPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH  150 (151)
T ss_dssp             CTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CceecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2e-45  Score=276.36  Aligned_cols=144  Identities=28%  Similarity=0.564  Sum_probs=136.3

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID  106 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~  106 (183)
                      +.|||++|+++|  ++++++.+..++ ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~-~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~   80 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVS-ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESC-SSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECC-CCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCccc
Confidence            579999999999  566788886554 78999999999 99999999999999999999999999999999999999999


Q ss_pred             C-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          107 L-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       107 ~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      . +|.+|++++.++|+|++|+.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+++++++.
T Consensus        81 ~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             TTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            8 7899999999999999999999999999999999999999999999999999999999999999874

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=2.5e-45  Score=279.89  Aligned_cols=145  Identities=30%  Similarity=0.597  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112           27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP  103 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp  103 (183)
                      +.+|+|||++|+++|  +.++|+.+. +..++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~-p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   79 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   79 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEE-ECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceec
Confidence            357899999999999  677888876 54478999999999 99999999999999999999999999999999999999


Q ss_pred             CccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHh
Q 030112          104 NIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQ  170 (183)
Q Consensus       104 nV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~  170 (183)
                      ||+.+|.||++++.             +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.
T Consensus        80 nv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~  159 (164)
T d2ucza_          80 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSIL  159 (164)
T ss_dssp             TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             eEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999984             45999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 030112          171 GG  172 (183)
Q Consensus       171 ~~  172 (183)
                      +.
T Consensus       160 k~  161 (164)
T d2ucza_         160 KS  161 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=2.2e-45  Score=276.25  Aligned_cols=143  Identities=32%  Similarity=0.597  Sum_probs=136.2

Q ss_pred             HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      .|||++|+++|  +++.|+.+. ++ ++|+++|+++| ||.+|||+||+|+|+|.||++||++||+|+|.|++|||||+.
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~-p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~   81 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK   81 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECC
Confidence            48999999999  566777775 66 78999999999 999999999999999999999999999999999999999999


Q ss_pred             CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          108 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       108 ~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      +|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.++|.+
T Consensus        82 ~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~~  149 (149)
T d1j7db_          82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  149 (149)
T ss_dssp             TCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999863

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=7e-45  Score=274.68  Aligned_cols=145  Identities=30%  Similarity=0.578  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++.+||++|+++|  ++++|+.+. ++ ++|+++|+++| ||+||||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~-p~-~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV   79 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   79 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEE-EC-CcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCc
Confidence            5789999999999  778888875 66 79999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceeccccc----CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          106 DLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       106 ~~~G~vcl~~l~----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      +++|.+|++++.    +.|+|++++.+||.+|+++|.+|++++|+|.|||.+|++|+++|.++||+|+.+++..
T Consensus        80 ~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          80 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            999999999996    5799999999999999999999999999999999999999999999999999998753

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=7.2e-46  Score=279.71  Aligned_cols=144  Identities=33%  Similarity=0.594  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      ++.|||++|+++|  +.++|+.+. +. ++|+++|+++| ||.+|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~~~rRl~~E~~~l~~~~~~g~~~~-p~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   80 (152)
T d1jata_           3 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI   80 (152)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcC
Confidence            3468999999999  778888875 66 78999999999 9999999999999999999999999999999999999999


Q ss_pred             cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      +.+|.+|++++..+|+|++++.+||.+|++||.+|++++|+|.|||++|.+|+++|.++||+|+.+++.
T Consensus        81 ~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~  149 (152)
T d1jata_          81 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK  149 (152)
T ss_dssp             CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred             CCCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-45  Score=276.21  Aligned_cols=146  Identities=23%  Similarity=0.522  Sum_probs=136.6

Q ss_pred             cchHHHHHHHHHHhhcC-----CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112           26 KQCARELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l~-----~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      |++.|.+||++|++++.     ...++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~-~~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   78 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEE-cC-CCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceeccc
Confidence            56789999999999992     23566665 44 68999999999 9999999999999999999999999999999999


Q ss_pred             ccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          100 VYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       100 i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      +|||||++ +|.+|++++.+.|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.++|
T Consensus        79 i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A  153 (154)
T d2bepa1          79 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA  153 (154)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            99999998 899999999999999999999999999999999999999999999999999999999999999886

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=3.1e-45  Score=277.24  Aligned_cols=148  Identities=27%  Similarity=0.566  Sum_probs=137.0

Q ss_pred             CCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112           24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (183)
Q Consensus        24 ~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i  100 (183)
                      ++...++.+||++|+++|  ++++|+.+. |+ ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus         4 ~~~~~~~~kRl~kEl~~l~~~~~~gi~~~-p~-~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i   81 (156)
T d2e2ca_           4 SKERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC   81 (156)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CcccchHHHHHHHHHHHHhHCCCCCEEEE-EC-CCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccC
Confidence            344556789999999999  677888875 76 79999999999 99999999999999999999999999999999999


Q ss_pred             cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      |||||+.+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+ |..+|.++|++++++..+
T Consensus        82 ~Hpnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~~~  154 (156)
T d2e2ca_          82 WHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999996 667899999999987654

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1e-44  Score=272.71  Aligned_cols=145  Identities=28%  Similarity=0.568  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      |.+||++|+++|  +.++++.+. +..++|++.|++.+||++|||+||+|+++|.||++||++||+|+|.|+||||||++
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~-~~~~~~~~~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNL-SSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEE-EECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEE-ecCCCceEEEEEEECCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            478999999999  677788775 44367899999988999999999999999999999999999999999999999999


Q ss_pred             CCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112          108 EGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG  175 (183)
Q Consensus       108 ~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~  175 (183)
                      +|.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+++.+|+..
T Consensus        80 ~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          80 NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            9999999995 6899999999999999999999999999999999999999999999999999998853

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.9e-44  Score=271.95  Aligned_cols=144  Identities=28%  Similarity=0.505  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY  101 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~  101 (183)
                      .|.+||++|++++  +.+.|+.+. |.    +.+|+++|+++| ||+||||+||+|+|+|.||++||++||+|+|.|++|
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~-p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAV-PTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEE-ecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc
Confidence            4789999999999  677787754 43    234899999999 999999999999999999999999999999999999


Q ss_pred             ccCccCCCceeccccc--CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          102 HPNIDLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       102 HpnV~~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      ||||+.+|.+|++++.  ++|+|++|+.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++
T Consensus        81 HPnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A  154 (156)
T d2uyza1          81 HPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA  154 (156)
T ss_dssp             STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred             cccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHC
Confidence            9999999999999995  47999999999999999999999999999999999999999999999999999987

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.6e-44  Score=269.93  Aligned_cols=141  Identities=28%  Similarity=0.503  Sum_probs=133.0

Q ss_pred             cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      |+..|.+||++|++++  +.++|+.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~-p~-~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   78 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEE-EC-CCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecccccc
Confidence            4678999999999999  677888875 66 78999999999 9999999999999999999999999999999999999


Q ss_pred             cCccC-CCceeccccc--CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 030112          103 PNIDL-EGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMA  168 (183)
Q Consensus       103 pnV~~-~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~  168 (183)
                      |||+. +|.||++++.  ++|+|++|+++||.+|+++|.+|+.++|+|.|||++|++|+++|+++||+.
T Consensus        79 pnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          79 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            99996 8999999985  689999999999999999999999999999999999999999999999974

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=2.9e-44  Score=268.65  Aligned_cols=140  Identities=33%  Similarity=0.564  Sum_probs=131.3

Q ss_pred             HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCC
Q 030112           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEG  109 (183)
Q Consensus        32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G  109 (183)
                      |||++|+++|  +.+.++.+. +..++|+++|+++|||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~-~~~~~n~~~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   80 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG   80 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCeEEE-ECCCCcceEEEEEECCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCC
Confidence            7999999999  455666654 5447899999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112          110 NVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGG  172 (183)
Q Consensus       110 ~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~  172 (183)
                      .||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++||+|+.+|
T Consensus        81 ~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          81 QVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             BBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             ccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999997 5699999999999999999999999999999999999999999999999999886

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=8.4e-44  Score=270.65  Aligned_cols=143  Identities=31%  Similarity=0.623  Sum_probs=133.6

Q ss_pred             HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL  107 (183)
Q Consensus        31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~  107 (183)
                      ..||++|+++|  ++++|+.+. +..++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~-~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~   80 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAG-LVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK   80 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC
Confidence            47999999999  778888887 44367899999999 999999999999999999999999999999999999999999


Q ss_pred             CCceecccccC-------------cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112          108 EGNVCLNVLRE-------------DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI  174 (183)
Q Consensus       108 ~G~vcl~~l~~-------------~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~  174 (183)
                      +|.||++++..             .|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++|++|++++..
T Consensus        81 ~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~e  160 (161)
T d1pzva_          81 EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE  160 (161)
T ss_dssp             TSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             CCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999852             59999999999999999999999999999999999999999999999999998753

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2.9e-43  Score=267.63  Aligned_cols=142  Identities=25%  Similarity=0.551  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhhcC---------------CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCc
Q 030112           30 RELRLHKDITELN---------------LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPK   93 (183)
Q Consensus        30 ~~~RL~~E~~~l~---------------~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~   93 (183)
                      ..+||++|+++|+               ...++.+. +. .+|+++|+++| ||.+|||+||+|+|+|.||++||++||+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~   79 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK   79 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEE-ec-CCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcE
Confidence            4789999999981               12245554 33 58999999999 9999999999999999999999999999


Q ss_pred             eeEeccccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112           94 VKCKTKVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGG  172 (183)
Q Consensus        94 v~f~t~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~  172 (183)
                      |+|.|++|||||+. +|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.|||++|.+|+++|.++||+|+.++
T Consensus        80 V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~  159 (161)
T d2f4za1          80 MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETF  159 (161)
T ss_dssp             EEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            99999999999977 89999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 030112          173 Y  173 (183)
Q Consensus       173 ~  173 (183)
                      +
T Consensus       160 a  160 (161)
T d2f4za1         160 A  160 (161)
T ss_dssp             C
T ss_pred             h
Confidence            6

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=8.2e-42  Score=258.78  Aligned_cols=142  Identities=30%  Similarity=0.575  Sum_probs=129.0

Q ss_pred             HHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC-C
Q 030112           31 ELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL-E  108 (183)
Q Consensus        31 ~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~-~  108 (183)
                      .|||++|+++|...+. .+ .+  ++|+++|+++| ||.+|||+||+|+++|.||++||++||+|+|.|+||||||+. +
T Consensus         2 ~rr~~~e~~~l~~~~~-~~-~~--~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~   77 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTR-KV-YP--SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS   77 (158)
T ss_dssp             CHHHHHHHHHHHSSSS-CE-EE--CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTT
T ss_pred             chHHHHHHHHHhcCCC-cC-CC--CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCc
Confidence            5899999999933222 23 24  47999999999 999999999999999999999999999999999999999988 8


Q ss_pred             CceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112          109 GNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD  176 (183)
Q Consensus       109 G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~  176 (183)
                      |.||++++.++|+|++++.++|.. |+.|+.+|++++|+|.|||++|++|+++|.++||+|+.+++...
T Consensus        78 G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~~  146 (158)
T d1yf9a1          78 GSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQ  146 (158)
T ss_dssp             CBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHH
T ss_pred             ccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCChh
Confidence            999999999999999999999975 67889999999999999999999999999999999999987543

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=228.79  Aligned_cols=110  Identities=24%  Similarity=0.561  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc--ccc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV--YHP  103 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i--~Hp  103 (183)
                      ++.|||++|++++  +.++++.+.....++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++  |||
T Consensus         3 ~~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hp   82 (117)
T d2a7la1           3 SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP   82 (117)
T ss_dssp             TSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             cHHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccc
Confidence            4579999999999  677888776544468999999999 99999999999999999999999999999999986  999


Q ss_pred             CccCCCceecccccCcccCCccHHhHHHHHHHhhc
Q 030112          104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  138 (183)
Q Consensus       104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~  138 (183)
                      ||+.+|.||++++.++|+|++|+++||.+|+++|+
T Consensus        83 nv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          83 HVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999884

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=219.98  Aligned_cols=108  Identities=33%  Similarity=0.715  Sum_probs=100.5

Q ss_pred             HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCC
Q 030112           32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE  108 (183)
Q Consensus        32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~  108 (183)
                      .||+||++++  ++++++.+...+ ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~-~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~   80 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLID-DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKN   80 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESS-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCC-CCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCC
Confidence            5899999999  677888876434 78999999999 9999999999999999999999999999999999999999999


Q ss_pred             Cceeccccc-------------CcccCCccHHhHHHHHHHhhcCC
Q 030112          109 GNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEP  140 (183)
Q Consensus       109 G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p  140 (183)
                      |.||+++|.             ++|+|++|+++||.+|+++|.+|
T Consensus        81 G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          81 GDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            999999984             56999999999999999999887

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=7.1e-36  Score=213.03  Aligned_cols=104  Identities=22%  Similarity=0.519  Sum_probs=98.0

Q ss_pred             HHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc-cccCccCC
Q 030112           33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV-YHPNIDLE  108 (183)
Q Consensus        33 RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~  108 (183)
                      ||++|++++  ++++++.+. ++ ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~-~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~   79 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSN   79 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTT
T ss_pred             HHHHHHHHHHhCCCCCEEEE-Ec-CCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCC
Confidence            899999999  677888876 55 78999999999 99999999999999999999999999999999985 89999999


Q ss_pred             CceecccccCcccCCccHHhHHHHHHHhhc
Q 030112          109 GNVCLNVLREDWKPVLNINTIIYGLYHLFT  138 (183)
Q Consensus       109 G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~  138 (183)
                      |.||++++.++|+|++|+++||.+|+++|+
T Consensus        80 G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          80 GDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999884

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=225.74  Aligned_cols=143  Identities=14%  Similarity=0.194  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112           29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI  105 (183)
Q Consensus        29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV  105 (183)
                      +|.+||++||+++  ++++++.+. ++ ++|+++|+++| ||.+|||+||.|+++|.||++||++||+|+|.|+++|+|+
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~-p~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~   78 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC   78 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCT
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEE-Ec-CcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCC
Confidence            3789999999999  677888776 66 68999999999 9999999999999999999999999999999999888888


Q ss_pred             cCCCce-ecccccCcccCCccHHhHHHHHHHhhcCCCCCC--Ccc-HHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112          106 DLEGNV-CLNVLREDWKPVLNINTIIYGLYHLFTEPNHED--PLN-HDAAELLRDSPACFETNVRMALQGGY  173 (183)
Q Consensus       106 ~~~G~v-cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~--p~n-~eaa~~~~~~~~~f~~~~r~~~~~~~  173 (183)
                      +..|.+ |+++..++|+|++||.+||.+|+++|.+|++..  +.+ ..+.+.|..+..+|.++++.++..+.
T Consensus        79 ~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          79 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654333 334556789999999999999999999988754  233 44456788899999999999887764

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=6.8e-36  Score=220.67  Aligned_cols=124  Identities=21%  Similarity=0.445  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHhhcCC---CCCceEeccCC-CCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112           28 CARELRLHKDITELNL---PEACKISFPNG-QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH  102 (183)
Q Consensus        28 ~~~~~RL~~E~~~l~~---~~~~~~~~~~~-~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H  102 (183)
                      ..+.+||++||+++++   +..+.+.+.+. ..|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            3578999999999933   44455554441 23599999999 9999999999999999999999999999999999999


Q ss_pred             cCccC-CCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHH
Q 030112          103 PNIDL-EGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA  151 (183)
Q Consensus       103 pnV~~-~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa  151 (183)
                      |||+. +|.||++++. ++|+|++||++||.+|+++|.+|+.....+++++
T Consensus        83 pnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g  133 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG  133 (136)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred             cccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            99997 6999999875 6899999999999999999999876555555443

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=213.80  Aligned_cols=124  Identities=20%  Similarity=0.369  Sum_probs=105.6

Q ss_pred             chHHHHHHHHHHhhcC--CCCCceE-ec-cCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112           27 QCARELRLHKDITELN--LPEACKI-SF-PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY  101 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~--~~~~~~~-~~-~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~  101 (183)
                      -..+.+||++||++++  .+++... .. .+..+|+++|++.| ||.+|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         3 ~~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~   82 (139)
T d2a4da1           3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             ccchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcc
Confidence            3567899999999993  3444332 22 22245799999999 999999999999999999999999999999999999


Q ss_pred             ccCccC-CCceeccccc--CcccCCccHHhHHHHHHHhhcCC-CCCCCccHHH
Q 030112          102 HPNIDL-EGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEP-NHEDPLNHDA  150 (183)
Q Consensus       102 HpnV~~-~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~p-~~~~p~n~ea  150 (183)
                      ||||+. +|.+|.+.+.  ++|+|++||++||.+|+++|.+| +..+|.|+|.
T Consensus        83 HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          83 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             cccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            999998 6788776664  57999999999999999999987 8889998874

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=225.51  Aligned_cols=139  Identities=17%  Similarity=0.313  Sum_probs=116.5

Q ss_pred             chHHHHHHHHHHhhcCCC----CCceEeccCCCCCceEEEEEE-e-CCCCCCCCcE-----------EEEEEEeCCCCCC
Q 030112           27 QCARELRLHKDITELNLP----EACKISFPNGQDDLMNFEVSI-K-PDEGYYQNGT-----------FVFSFEVPPIYPH   89 (183)
Q Consensus        27 ~~~~~~RL~~E~~~l~~~----~~~~~~~~~~~~n~~~w~~~i-g-p~~tpyegg~-----------f~~~i~fp~~YP~   89 (183)
                      +.+|.+||++||+++++.    .++. .++..++|+++|++.| | |++|||+||.           |+++|.||++||+
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~-~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIY-SVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSE-EEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeE-EeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            678999999999999322    2332 2333367999999999 7 8999999986           9999999999999


Q ss_pred             CCCceeEeccccccCc-cCCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCC--CCCccHHHHHHHHhCHHHHHHHH
Q 030112           90 DAPKVKCKTKVYHPNI-DLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNH--EDPLNHDAAELLRDSPACFETNV  165 (183)
Q Consensus        90 ~pP~v~f~t~i~HpnV-~~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~--~~p~n~eaa~~~~~~~~~f~~~~  165 (183)
                      +||+|+|.|++||||+ +.+|.||+++|. ++|+|++||++||.+|+++|.+|++  +.+.|.+++.+. +++++|++.|
T Consensus        81 ~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~-~~~~~y~~~~  159 (162)
T d1zuoa1          81 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQSYNSIV  159 (162)
T ss_dssp             SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHH-HHHHHHHHHH
T ss_pred             hcceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHH-HhHHHHHHHH
Confidence            9999999999999985 669999999995 5699999999999999999988765  556677766654 5678899998


Q ss_pred             HH
Q 030112          166 RM  167 (183)
Q Consensus       166 r~  167 (183)
                      |.
T Consensus       160 ~~  161 (162)
T d1zuoa1         160 QI  161 (162)
T ss_dssp             HH
T ss_pred             hh
Confidence            84

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-20  Score=138.41  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=77.1

Q ss_pred             CCCceEEEEEE-eCCCCCCCCcEEEE--EEEeCCCCCCCCCceeEecc-----ccccCccCCCceecccccCcccCCccH
Q 030112           55 QDDLMNFEVSI-KPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTK-----VYHPNIDLEGNVCLNVLREDWKPVLNI  126 (183)
Q Consensus        55 ~~n~~~w~~~i-gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~vcl~~l~~~W~p~~~i  126 (183)
                      +++...|.+.| |+.+++|+||.|.+  .|.||++||.+||.|.|.+.     ++||||+.+|+||++.|.++|.+.+++
T Consensus        43 ~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L  122 (141)
T d1s1qa_          43 NDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL  122 (141)
T ss_dssp             TTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCH
T ss_pred             CCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCCCcchhhcCCCcccccH
Confidence            57788999999 99999999999998  56689999999999988753     789999999999999998777788899


Q ss_pred             HhHHHHHHHhhcC
Q 030112          127 NTIIYGLYHLFTE  139 (183)
Q Consensus       127 ~~iL~~i~~ll~~  139 (183)
                      .+++..|+++|.+
T Consensus       123 ~~ll~~L~~~f~~  135 (141)
T d1s1qa_         123 LGLIQVMIVVFGD  135 (141)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999986

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=4.1e-18  Score=126.86  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=72.5

Q ss_pred             CCCceEEEEEE-eCCCCCCCCcE---EEEEEEeCCCCCCCCCceeEecc-----------ccccCccCCCceecccccCc
Q 030112           55 QDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKTK-----------VYHPNIDLEGNVCLNVLRED  119 (183)
Q Consensus        55 ~~n~~~w~~~i-gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t~-----------i~HpnV~~~G~vcl~~l~~~  119 (183)
                      ++....+.+.+ |.-..+|+|+.   |.+.|.||++||+.||.++|.++           ++|||||.+|+||++.|.++
T Consensus        48 ~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W  127 (152)
T d1uzxa_          48 SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCW  127 (152)
T ss_dssp             TTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCBCCHHHHSC
T ss_pred             CCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcEehHHhcCC
Confidence            34456677777 88889999996   78889999999999999999865           67999999999999999988


Q ss_pred             ccCCccHHhHHHHHHHhhcCCC
Q 030112          120 WKPVLNINTIIYGLYHLFTEPN  141 (183)
Q Consensus       120 W~p~~~i~~iL~~i~~ll~~p~  141 (183)
                      |.|+.++.++|..|+.+|.+|.
T Consensus       128 ~~~~s~L~~ll~~l~~~f~~~P  149 (152)
T d1uzxa_         128 DPAAMNLIMVVQELMSLLHEPP  149 (152)
T ss_dssp             CTTTCCHHHHHHHHHTGGGSCC
T ss_pred             CCccCcHHHHHHHHHHHhcCCC
Confidence            8999999999999999999863

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.1e-06  Score=60.94  Aligned_cols=105  Identities=17%  Similarity=0.286  Sum_probs=73.1

Q ss_pred             CCCCcchHHHHHHHHHHhhc------CC-CCCceEeccCCCCCceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112           22 TPVKKQCARELRLHKDITEL------NL-PEACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (183)
Q Consensus        22 ~~~~~~~~~~~RL~~E~~~l------~~-~~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP   92 (183)
                      .+++....-..||..||..|      ++ ...-.+.+.. ..+-+.|.+.+  ....--||   |.+++.+|..||..||
T Consensus        18 AGPrD~e~W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWyihnl~kYe---Fd~eFdIP~tYP~t~p   93 (162)
T d2in1a1          18 AGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYE---FDIEFDIPITYPTTAP   93 (162)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEEEETTEEEE---EEEEEECCTTTTTSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeEEEeeeEEE---EEEEeccCCCCCCCCc
Confidence            34455567889999999999      11 2333455555 55668898888  44444555   7788888999999999


Q ss_pred             ceeEecc-ccccCccCCCceeccccc-Ccc---cCCccHHhHH
Q 030112           93 KVKCKTK-VYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII  130 (183)
Q Consensus        93 ~v~f~t~-i~HpnV~~~G~vcl~~l~-~~W---~p~~~i~~iL  130 (183)
                      .|....- --..-.|.+|+||++.-. .-|   .|.++|...|
T Consensus        94 Ei~lPeLdGKTaKMYRGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1          94 EIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             CCBCGGGSSSCSSSCGGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             ceeccccCCchhhhhcCceeeccccchhhhhhcCCchhHHHHH
Confidence            9976522 334556778999998653 446   5677877654

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.043  Score=37.48  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             CcEEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHH
Q 030112           74 NGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAEL  153 (183)
Q Consensus        74 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~  153 (183)
                      .....+.+.+|.+||..+|.|...+.                    |-+......++..+...+.+-...+++=.+.+..
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~lve~  124 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV--------------------LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEW  124 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT--------------------TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHH
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45688999999999999999976432                    3333334555566655555433445544455555


Q ss_pred             HHhC
Q 030112          154 LRDS  157 (183)
Q Consensus       154 ~~~~  157 (183)
                      .+++
T Consensus       125 lqe~  128 (140)
T d2daxa1         125 VREH  128 (140)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.066  Score=36.66  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=41.9

Q ss_pred             CCCcchHHHHHHHHHHhhcCCCCCceEec-cCCCC----CceEEEEEEeCC--CCCCCCcEEEEEEEeCCCCCCCCCcee
Q 030112           23 PVKKQCARELRLHKDITELNLPEACKISF-PNGQD----DLMNFEVSIKPD--EGYYQNGTFVFSFEVPPIYPHDAPKVK   95 (183)
Q Consensus        23 ~~~~~~~~~~RL~~E~~~l~~~~~~~~~~-~~~~~----n~~~w~~~igp~--~tpyegg~f~~~i~fp~~YP~~pP~v~   95 (183)
                      ++..+..-..+-..|+..|..--+-.+.. .....    ......+.+.+.  +.......+.+.+.||.+||..+|.+.
T Consensus         4 ~~~~~~~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~   83 (137)
T d1ukxa_           4 GSSGMESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEID   83 (137)
T ss_dssp             CSCCCCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCE
T ss_pred             CCCCcccHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEE
Confidence            33445555566677887772111111211 11011    111344445222  223334568899999999999999998


Q ss_pred             Eecc
Q 030112           96 CKTK   99 (183)
Q Consensus        96 f~t~   99 (183)
                      +...
T Consensus        84 ~~~~   87 (137)
T d1ukxa_          84 LKNA   87 (137)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            7643

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.033  Score=37.08  Aligned_cols=25  Identities=28%  Similarity=0.727  Sum_probs=21.2

Q ss_pred             cEEEEEEEeCCCCCCCCCceeEecc
Q 030112           75 GTFVFSFEVPPIYPHDAPKVKCKTK   99 (183)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~   99 (183)
                      ....+.+.||++||..+|.+.+.+.
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            4688889999999999999987653

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.056  Score=37.06  Aligned_cols=67  Identities=15%  Similarity=0.094  Sum_probs=46.5

Q ss_pred             cEEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHH
Q 030112           75 GTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL  154 (183)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~  154 (183)
                      -.+.+.+.+|++||..+|.|...+                    .|-+......+...|...+.+-....+.=.+...+.
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~--------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~l  127 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS--------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWL  127 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC--------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec--------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            357888999999999999987543                    244455567777777777765445566656666666


Q ss_pred             HhCHHHH
Q 030112          155 RDSPACF  161 (183)
Q Consensus       155 ~~~~~~f  161 (183)
                      +++-..|
T Consensus       128 qe~~~~~  134 (141)
T d2dawa1         128 QDNSASY  134 (141)
T ss_dssp             HHTTHHH
T ss_pred             HHHHHHH
Confidence            6665544